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Phylogenetic Tree Reconstruction

Results

Parameters

Name Value
  User e-mail address     sherlock1991@rambler.ru  
  Use homological fragments only     Yes  
  Scale     Random  
  Algorithm     Both Cluster and Topological  
  Start position     1  
  End position     10000  
  Gap penalty (in SD units)     1  
  Throw off columns with N      
  Output Tree Type     PHYLIP  
  Picture width     640  
  Picture height     480  
  Max/min factor (cluster)     8  
  Max/min factor (topological)     8  
  Bootstrap Enable     No  


Alignment

BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA
BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS
RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG
VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA
VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA
ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA
PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA

BRAJA KKSGRVAAEGLIGALT--KGTKGVVVEVNSETDFVARNGQFQGLVKMIAQ
BURCA KAASRVTAEGVVASFV--GGNAGALVELNCETDFVAKNDDFLAFSKTVAE
RALPJ KASSRVTAEGVVAAFV--EGTTGALVEVNCETDFVSKNDDFLAFTNEVAK
VIBCH KKAGNIAAEGTIMIKE--GEGIAALVEVNCQTDFVAKDSNFVAFANQVTD
VIBFM KKAGNVAAEGAIIIKE--ENGVAALLEVNCQTDFVAKDANFTAFAAEVAA
ECOLI KKAGNVAADGVIKTKI--DGNYGIILEVNCQTDFVAKDAGFQAFADKVLD
PROMH KKAGRVAAEGIILAEVAADGKFGALVELNCETDFVAKDAGFIAFGKDVMA

BRAJA VAFDVG-ADVEKIKAAKVGDVTIETAINDAIATIGENMTLRRAASLEVSQ
BURCA LVATQNPADVAALSALPLEGSTVDAVRLALIGKIGENVSIRRFVRFETAN
RALPJ LIAQKNPADVAALSALSIGDETVEAVRTRLIGKIGENMTIRRFQRFE-GT
VIBCH AALASK-ASVEELQA------QFEEARVALVAKIGENINIRRVQYVE-GE
VIBFM AAVASQ-ATVEELQA------QFEETRVALVAKIGENINIRRVQYVA-GS
ECOLI AAVAGKITDVEVLKA------QFEEERVALVAKIGENINIRRVAALE-GD
PROMH AVLADKTDDIEALKA------KFEDARTALVAKIGENINIRRVAILE-GE

BRAJA GVVSHYVHGAVIDGAGKMGVIVALESPGKADELAALGRQIAMHVAAANPL
BURCA KIAT-YLHGA------RIGVIVEYTGAEEQ-----VGKDVAMHIAAMKPV
RALPJ QLTS-YLHGT------RIGVMVAFEG-NEV-----AAKDAAMQAAAMKPV
VIBCH ALAT-YRHGD------RIGVVVAGSA-DVE-----TLKHVAMHVAASRPE
VIBFM ALAS-YRHGE------KIGVVVAGEG-DAE-----TLKHIAMHVAASKPE
ECOLI VLGS-YQHGA------RIGVLVAAKGADEE-----LVKHIAMHVAASKPE
PROMH ELGT-YLHGA------RIGVLVAAKGANEE-----LIKHIAMHVAASKPE

BRAJA ALDPSGLDPAVVKREKDVLADKYRQQGKPENVIEKIVESGLKTYYKEVCL
BURCA ALSSADVPAELIDTERRVAEQKAAESGKPAEIVAKMVDGSVQKYLKEVSL
RALPJ SLSADDVPAELVAKERSVAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSL
VIBCH FLTPDDVPAEVVAKEREVQVGIAMNEGKSKEIAEKMVEGRMKKFTGEVSL
VIBFM YVNPSDVPADVVEKEKAVQVEIAMNEGKPQEIAEKMVIGRMKKFTGEVSL
ECOLI FIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSL
PROMH YVRPEDVPADVVEHEHQIQMDIAMQSGKPREIAEKMVTGRMNKFTGEISL

BRAJA LEQAFIHDTGKSVAQAVKEAEGKVGGAVKIAGFVRYALGEGIEKQES-DF
BURCA LNQTFVKNDKQTIEQMLKAANATV------QKFALFVVGEGIEKRQD-DF
RALPJ LNQPFVKNDKQTVEQMLKAANTTV------KAFTLYVVGEGIEKKQD-DF
VIBCH TGQPFVMEPKKTVGEILAEKGATV------SAFIRLEVGEGIEKQEGLSF
VIBFM TGQAFIMEPKKTVAEILKEKGASV------SNFVRLEVGEGIEKAAEMSF
ECOLI TGQPFVMEPSKTVGQLLKEHNAEV------TGFIRFEVGEGIEKVET-DF
PROMH TGQHFVMDPSKTVGDLLKENNAEI------INFVRFEVGEGIEKVEA-DF

BRAJA AAEVA---AASGKK-
BURCA AAEVAAQVAAAKQQ-
RALPJ AAEVAAQVAAAKQQA
VIBCH AEEVA---LAQKG--
VIBFM ADEVA---AVQKG--
ECOLI AAEVA---AMSKQS-
PROMH AAEVA---AMSK---






PHYLOGENETIC TREE

CLUSTER ALGORITHM

0.585935 _____________________________________________________________________ BRAJA |____________________________________________________________________ BURCA | |____________________________ RALPJ |______________________________________________________________ VIBCH | |________________________ VIBFM |_____________________________________ ECOLI |___________________________ PROMH * The phylogenetic tree in Phylip format (BRAJA:0.585935,((BURCA:0.234467,RALPJ:0.234467):0.292441,((VIBCH:0.203144,VIBFM:0.203144):0.108404,(ECOLI:0.230516,PROMH:0.230516):0.081031):0.215361):0.059026);

TOPOLOGICAL ALGORITHM

____________________________________ BURCA | | |________________________________ RALPJ | |_____________________ VIBCH | | |___________________________ VIBFM | |____ PROMH | |________________________ ECOLI |___________________ BRAJA * The phylogenetic tree in Phylip format (((BURCA:0.001000,RALPJ:0.269122):0.140957,((VIBCH:0.001000,VIBFM:0.231037):0.070957,(PROMH:0.012720,ECOLI:0.209821):0.023761):0.112944):0.163872,BRAJA:0.163872);

Distance Matrix

           1     2     3     4     5     6     7     
 1 BRAJA  0.000 0.588 0.573 0.615 0.605 0.560 0.585
 2 BURCA  0.588 0.000 0.234 0.543 0.548 0.504 0.504
 3 RALPJ  0.573 0.234 0.000 0.535 0.544 0.514 0.522
 4 VIBCH  0.615 0.543 0.535 0.000 0.203 0.299 0.329
 5 VIBFM  0.605 0.548 0.544 0.203 0.000 0.301 0.317
 6 ECOLI  0.560 0.504 0.514 0.299 0.301 0.000 0.231
 7 PROMH  0.585 0.504 0.522 0.329 0.317 0.231 0.000


Graphical Phylogenetic Tree


Put mouse over
a tree type below.


Cluster Algorithm:
Slanted
Phylogram

Topological Algorithm:
Slanted
Phylogram
  Parameters    Alignment    Textual Phylogenetic Tree    Distance Matrix    Graphical Phylogenetic Tree  


Redesigned by Valeri Kazatchenko. Last updated: May 24, 2001.
Comments and bug-reports send to Vladimir Nikolaev