BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: bacteria.fasta 43,929 sequences; 13,963,866 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding sub... 860 0.0 sp|Q9KQS7|CLPX_VIBCH ATP-dependent Clp protease ATP-binding sub... 725 0.0 sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding sub... 654 0.0 sp|Q1BH84|CLPX_BURCA ATP-dependent Clp protease ATP-binding sub... 621 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding sub... 612 0.0 sp|Q2K9U6|CLPX_RHIEC ATP-dependent Clp protease ATP-binding sub... 598 0.0 sp|Q89KG2|CLPX_BRADU ATP-dependent Clp protease ATP-binding sub... 598 0.0 tr|B9JD32|B9JD32_AGRRK ATP-dependent Clp protease ATP-binding s... 595 0.0 sp|Q9KNQ7|HSLU_VIBCH ATP-dependent protease ATPase subunit HslU... 99.0 2e-22 sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU... 95.9 2e-21 sp|Q2KE54|HSLU_RHIEC ATP-dependent protease ATPase subunit HslU... 93.6 1e-20 sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU... 93.6 1e-20 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU... 93.2 2e-20 sp|Q89WN2|HSLU_BRADU ATP-dependent protease ATPase subunit HslU... 91.7 5e-20 sp|B9JG71|HSLU_AGRRK ATP-dependent protease ATPase subunit HslU... 91.7 5e-20 sp|Q1BSM8|HSLU_BURCA ATP-dependent protease ATPase subunit HslU... 82.4 7e-17 tr|Q9KU86|Q9KU86_VIBCH ATP-dependent zinc metalloprotease FtsH ... 47.0 2e-05 sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS... 46.2 3e-05 sp|Q89U80|RUVB_BRADU Holliday junction ATP-dependent DNA helica... 45.4 4e-05 tr|Q2K4M2|Q2K4M2_RHIEC ATP-dependent zinc metalloprotease FtsH ... 45.4 5e-05 tr|B9J9H1|B9J9H1_AGRRK ATP-dependent zinc metalloprotease FtsH ... 45.1 7e-05 tr|Q8KKT3|Q8KKT3_RHIEC Probable ATPase (ATP-binding) protein OS... 44.3 1e-04 tr|A0A0H2XMS5|A0A0H2XMS5_BURCA ATP-dependent zinc metalloprotea... 43.9 2e-04 tr|H7C810|H7C810_BRADU ATP-dependent zinc metalloprotease FtsH ... 43.5 2e-04 tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH ... 43.5 2e-04 tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH ... 43.1 3e-04 > sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 > sp|Q9KQS7|CLPX_VIBCH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=clpX PE=3 SV=1 Length=426 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/426 (84%), Positives = 383/426 (90%), Gaps = 2/426 (0%) Query 1 MTDKRKDG-SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTDK K+G S KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIK+V P + Sbjct 1 MTDKSKEGGSSKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKK 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-SNGVELGKSNILLI 118 E +ALPTP +IR HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDT S GVELGKSNILLI Sbjct 61 ESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV KA+R Sbjct 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKS+NPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQV Sbjct 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DTSKILFICGGAFAGLDKVI RV TG+GIGFGA V++K + + EL QVEPEDL+K+ Sbjct 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEFIGRLPV ATL EL E ALIQIL EPKNALTKQY ALF LE VDLEFR++AL AI Sbjct 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEA 418 A KAM RKTGARGLRSI+EA LL+TMY+LPSME+V KVVIDESVI+G+S PLLIY E+ Sbjct 361 AAKAMKRKTGARGLRSILEAVLLETMYELPSMEEVSKVVIDESVINGESAPLLIYSANES 420 Query 419 QQASGE 424 Q A E Sbjct 421 QAAGAE 426 > sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=clpX PE=3 SV=1 Length=426 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/418 (77%), Positives = 358/418 (86%), Gaps = 2/418 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EIR LD YVIGQE+AKKVLAVAVYNHYKRL D + +ELGKSNIL+IG Sbjct 61 SGHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL++VI +R G GIGF A V+++ GE +VEPEDL+KFG Sbjct 241 TRNILFICGGAFAGLERVIQNRSARG-GIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL+EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL A+A Sbjct 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 +KA+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG S+PL+IY E Sbjct 360 RKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMIYENSE 417 > sp|Q1BH84|CLPX_BURCA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia cenocepacia (strain AU 1054) OX=331271 GN=clpX PE=3 SV=1 Length=423 Score = 621 bits (1601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/415 (74%), Positives = 355/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 RS LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSRSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L + EPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLRETEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQY LF +E V+LE R AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+M+ V KV+IDE+VIDG KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIY 413 > sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 > sp|Q2K9U6|CLPX_RHIEC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=clpX PE=3 SV=1 Length=425 Score = 598 bits (1543), Expect = 0.0, Method: Compositional matrix adjust. Identities = 294/415 (71%), Positives = 349/415 (84%), Gaps = 3/415 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSRDGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 71 DIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATVKA+ D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVKAQDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA+KA+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM++LP++E V +VVI E V+ G ++PL IY + ++A+ Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYIYADRQEEKANA 423 > sp|Q89KG2|CLPX_BRADU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=clpX PE=3 SV=1 Length=423 Score = 598 bits (1541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/406 (73%), Positives = 341/406 (84%), Gaps = 3/406 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SLVKSRDGIPTPK 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ AKKVL+VAV+NHYKRL + N VEL KSNILLIGPTGSGKTLL Sbjct 68 EICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLL 127 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDEIDK Sbjct 128 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEIDK 187 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 188 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 247 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGL+K+IS R + S IGFGA V A D+ + GE+ VEPEDL+K+GLIPEF+GRL Sbjct 248 GAFAGLEKIISARGRSTS-IGFGAQVLAPEDRRT-GEIFRHVEPEDLLKYGLIPEFVGRL 305 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PVVATL +L E +L +IL EPKNAL KQYQ LF +E ++L F DEAL A+A+KA+ RKTG Sbjct 306 PVVATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTG 365 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414 ARGLRSI+EA LL+TM+DLP +E VE+VVI V++G ++PL IY Sbjct 366 ARGLRSILEAILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYA 411 > tr|B9JD32|B9JD32_AGRRK ATP-dependent Clp protease ATP-binding subunit ClpX OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) OX=311403 GN=clpX PE=3 SV=1 Length=470 Score = 595 bits (1534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/415 (70%), Positives = 346/415 (83%), Gaps = 3/415 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 57 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSRDGVPTPQ 115 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 116 DIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYL 175 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 176 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 235 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 236 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 295 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGA VK D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 296 GAFAGLDKIISARGEKTS-IGFGAAVKGPDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 353 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 354 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTG 413 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP++E V +VVI E V+ G ++PL IY + ++A+ Sbjct 414 ARGLRSIMEKILLDTMFDLPALEGVREVVISEEVVRGSARPLYIYADRQDEKANA 468 > sp|Q9KNQ7|HSLU_VIBCH ATP-dependent protease ATPase subunit HslU OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=hslU PE=3 SV=1 Length=443 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ++AK+ +A+A+ N ++R++ + S VE+ NIL+IGPTG GK Sbjct 5 TPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQ-LEESLRVEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L +VPF +AT TE GYVG++VE+II+ L Sbjct 64 TEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDL 103 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/229 (33%), Positives = 103/229 (45%), Gaps = 61/229 (27%) Query 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222 ++L ++ Y+V+ GIV+IDEIDKI ++ + DVS EGVQ+ LL LIEG+ + Sbjct 237 EELKEQAIYNVEN--NGIVFIDEIDKICKRGEVSG--PDVSREGVQRDLLPLIEGSTVST 292 Query 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 282 KH V T ILFI GAF V SD Sbjct 293 ------KHGM-----VRTDHILFIASGAF---------------------QVAKPSD--- 317 Query 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342 LIPE GRLP+ L LS +IL EPK +LT+QY AL Sbjct 318 -----------------LIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360 Query 343 LEGVDLEFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 E VD++F ++ + IA A GAR L +++E + + +D Sbjct 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFD 409 > sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=hslU PE=3 SV=1 Length=447 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/169 (37%), Positives = 92/169 (54%), Gaps = 21/169 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRA-EVTPKNILMIGPTGVGK 62 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T +A LARL + PF +AT TE GYVG DVE+II+ D+ A ++ E Sbjct 63 TEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIR--------DLADAAVKMLREQE 114 Query 186 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 I K+ +++ D + E + ALL AA P G P +E Sbjct 115 IQKVKYRAE------DAAEERILDALLP------AARPAMGFGDEPARE 151 Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/238 (31%), Positives = 104/238 (44%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI+++++ DVS EGVQ+ LL LIEG + Sbjct 249 QHGIVFIDEIDKIAKRANAGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 295 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DL+ Sbjct 296 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLV 319 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS +IL EP +LT+QY+ L EG+ +EF ++ + Sbjct 320 -----PELQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL S + ++ID ++ Sbjct 375 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSH 432 > sp|Q2KE54|HSLU_RHIEC ATP-dependent protease ATPase subunit HslU OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=hslU PE=3 SV=1 Length=435 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + D S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRYIIGQHDAKRAVAIALRNRWRR-QQLDPSLRDEVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 64 TEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 101/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 243 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF V SD Sbjct 290 KTDHILFIASGAFH---------------------VSKPSD------------------- 309 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 L+PE GRLP+ L L++E +IL E + +L +QY+AL E ++L+F D+A+DA+ Sbjct 310 -LLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETENLNLDFTDDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A A+ GAR L++++E L D Y+ P Sbjct 369 ADVAVHLNSSVENIGARRLQTVMERVLDDISYNAP 403 > sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU OS=Escherichia coli (strain K12) OX=83333 GN=hslU PE=1 SV=1 Length=443 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ+ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF + SD Sbjct 297 -VKTDHILFIASGAF---------------------QIAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + YD Sbjct 375 RIAEAAWQVNESTENIGARRLHTVLERLMEEISYD 409 > sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 > sp|Q89WN2|HSLU_BRADU ATP-dependent protease ATPase subunit HslU OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=hslU PE=3 SV=1 Length=434 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/113 (41%), Positives = 73/113 (65%), Gaps = 1/113 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD +++GQ AK+ +++A+ N ++R + + S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRFIVGQTDAKRAVSIALRNRWRR-QQLEGSLREEVLPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 T +A LA+L + PF +AT TE GYVG DVE I++ L++ V++ +R Sbjct 64 TEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIAQVRERKR 116 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/215 (34%), Positives = 100/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI + + + DVS EGVQ+ LL LIEGT + KH V Sbjct 242 GIVFLDEIDKICAR--DGRVGGDVSREGVQRDLLPLIEGTTVST------KHGA-----V 288 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF +P DL+ Sbjct 289 KTDHILFIASGAFH------------------------------------VAKPSDLL-- 310 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L+ + + +IL EP+ +L KQY AL EGV L+ D A+DA+ Sbjct 311 ---PELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMQTEGVTLDITDNAIDAL 367 Query 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLP 388 A A+A + GAR L++++E L + + P Sbjct 368 ADVAVAVNSTVENIGARRLQTVMERVLDEISFTAP 402 > sp|B9JG71|HSLU_AGRRK ATP-dependent protease ATPase subunit HslU OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) OX=311403 GN=hslU PE=3 SV=1 Length=436 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/108 (44%), Positives = 68/108 (63%), Gaps = 13/108 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 +P EI + LD Y++GQ +AK+ +A+A+ N ++R LR+ E+ NIL+IG Sbjct 5 SPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLEPDLRD-------EVMPKNILMIG 57 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 PTG GKT ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 58 PTGVGKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/213 (32%), Positives = 100/213 (47%), Gaps = 59/213 (28%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 244 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 290 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF V SD Sbjct 291 KTDHILFIASGAFH---------------------VSKPSD------------------- 310 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 L+PE GRLP+ L L++E +IL EP+ +L +QY+AL E + L+F D+A+DA+ Sbjct 311 -LLPELQGRLPIRVELRPLTKEDFRRILTEPEASLIRQYKALMETEDLKLDFTDDAIDAL 369 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 A A+ GAR L++++E L + Y+ Sbjct 370 ADVAVHLNSTVENIGARRLQTVMERVLDEISYN 402 > sp|Q1BSM8|HSLU_BURCA ATP-dependent protease ATPase subunit HslU OS=Burkholderia cenocepacia (strain AU 1054) OX=331271 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/233 (32%), Positives = 102/233 (44%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ +++ S +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNNEGS-GGEVSRQGVQRDLLPLVEGTTV-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS E IL +L KQYQAL E V LEF + + Sbjct 324 -----PELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQALLATEDVQLEFAADGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E L + + + E+V ID +D Sbjct 379 RLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAG-ERVTIDAKYVD 430 > tr|Q9KU86|Q9KU86_VIBCH ATP-dependent zinc metalloprotease FtsH OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=ftsH PE=3 SV=1 Length=651 Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 6/80 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 + +L++GP G+GKTLLA+ +A VPF + E +VG + Q Sbjct 190 TGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ----- 243 Query 173 VQKAQRGIVYIDEIDKISRK 192 +KA I++IDEID + R+ Sbjct 244 AKKASPCIIFIDEIDAVGRQ 263 > sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain K12) OX=83333 GN=ftsH PE=1 SV=1 Length=644 Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > sp|Q89U80|RUVB_BRADU Holliday junction ATP-dependent DNA helicase RuvB OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ruvB PE=3 SV=1 Length=351 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (49%), Gaps = 25/117 (21%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L D+V GQ+QA+K L++ + KR D ++L +GP G GKT LA+ +A Sbjct 29 LSDFV-GQQQARKNLSIFIEAARKRGEALD----------HVLFVGPPGLGKTTLAQIVA 77 Query 134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 + L V F + +AG + + N+ +R +++IDEI ++S Sbjct 78 KELGVGFRATSGPVIAKAGDLAALLTNL--------------EERDVLFIDEIHRLS 120 > tr|Q2K4M2|Q2K4M2_RHIEC ATP-dependent zinc metalloprotease FtsH OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=ftsH PE=3 SV=1 Length=643 Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 > tr|B9J9H1|B9J9H1_AGRRK ATP-dependent zinc metalloprotease FtsH OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) OX=311403 GN=ftsH PE=3 SV=1 Length=647 Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 > tr|Q8KKT3|Q8KKT3_RHIEC Probable ATPase (ATP-binding) protein OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=RHE_PD00006 PE=4 SV=2 Length=334 Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 11/96 (11%) Query 105 SNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP-FTMADATTLTEAGYVGEDVENIIQ 163 S+G++ + ILL+GP G+GKT+ A LA L +P FT+ +T+ ++GE + Sbjct 116 SHGLQ-PRRKILLVGPPGAGKTMTASALAGELHLPLFTILLDGLITK--FMGETASKL-- 170 Query 164 KLLQKCDYDVQKAQRGIVYIDEIDKI-SRKSDNPSI 198 + +D A RG+ DE D I +R+ D + Sbjct 171 ----RLVFDAMTATRGVYLFDEFDAIGARRGDRQDV 202 > tr|A0A0H2XMS5|A0A0H2XMS5_BURCA ATP-dependent zinc metalloprotease FtsH OS=Burkholderia cenocepacia (strain AU 1054) OX=331271 GN=ftsH PE=3 SV=1 Length=627 Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 186 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 239 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 240 KHAPCIVFIDEIDAVGR 256 > tr|H7C810|H7C810_BRADU ATP-dependent zinc metalloprotease FtsH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ftsH PE=3 SV=1 Length=640 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTL+A +A +VPF + E +VG + Q + Sbjct 192 VLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 245 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 246 KNAPCIIFIDEIDAVGR 262 > tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=ftsH PE=3 SV=1 Length=639 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 190 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFDQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 244 KHAPCIIFIDEIDAVGR 260 > tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH OS=Pasteurella multocida (strain Pm70) OX=272843 GN=ftsH PE=3 SV=1 Length=639 Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 186 ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 239 Query 175 KAQRGIVYIDEIDKISRK 192 K +++IDEID + R+ Sbjct 240 KNAPCLIFIDEIDAVGRQ 257 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3053560776 Database: bacteria.fasta Posted date: Mar 10, 2018 6:21 PM Number of letters in database: 13,963,866 Number of sequences in database: 43,929 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40