Nucleic acid sequence Maximum Likelihood method, version 3.6b Data set # 1: Empirical Base Frequencies: A 0.25518 C 0.25914 G 0.24741 T(U) 0.23827 Transition/transversion ratio = 1.000000 +-----C +--1 | | +----D +--3 +----2 | | +---E | | | +-------------------------------------F | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6028.83868 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.17445 ( 0.14082, 0.20807) ** 4 3 0.08258 ( 0.05412, 0.11100) ** 3 1 0.00007 ( zero, 0.02531) 1 C 0.20043 ( 0.16388, 0.23698) ** 1 2 0.17078 ( 0.13452, 0.20701) ** 2 D 0.15546 ( 0.12410, 0.18671) ** 2 E 0.12956 ( 0.10051, 0.15858) ** 3 F 1.25943 ( 1.08211, 1.43671) ** 4 B 0.18570 ( 0.15099, 0.22044) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 2: Empirical Base Frequencies: A 0.24051 C 0.26605 G 0.25604 T(U) 0.23741 Transition/transversion ratio = 1.000000 +-----C +--2 | | +----E +--3 +---1 | | +-----D | | | +------------------------------------F | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6126.10408 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.16905 ( 0.13566, 0.20247) ** 4 3 0.07321 ( 0.04390, 0.10237) ** 3 2 0.02272 ( zero, 0.05089) 2 C 0.19933 ( 0.16276, 0.23585) ** 2 1 0.13286 ( 0.09971, 0.16595) ** 1 E 0.16080 ( 0.12831, 0.19334) ** 1 D 0.18299 ( 0.14842, 0.21745) ** 3 F 1.20241 ( 1.03639, 1.36831) ** 4 B 0.20242 ( 0.16593, 0.23895) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 3: Empirical Base Frequencies: A 0.26087 C 0.25828 G 0.23102 T(U) 0.24983 Transition/transversion ratio = 1.000000 +-----B | | +-----C 1--3 | | +--------------------------------F | +--2 | | +---E | +----4 | +-----D | +---A remember: this is an unrooted tree! Ln Likelihood = -5953.13078 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.11809 ( 0.09091, 0.14531) ** 1 B 0.17606 ( 0.14345, 0.20870) ** 1 3 0.07569 ( 0.04872, 0.10265) ** 3 C 0.21132 ( 0.17381, 0.24881) ** 3 2 0.02995 ( zero, 0.06446) 2 F 1.09098 ( 0.94375, 1.23817) ** 2 4 0.16787 ( 0.12914, 0.20649) ** 4 E 0.11945 ( 0.09103, 0.14785) ** 4 D 0.17471 ( 0.14142, 0.20801) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 4: Empirical Base Frequencies: A 0.25259 C 0.24224 G 0.24793 T(U) 0.25725 Transition/transversion ratio = 1.000000 +-----B | | +---D | +--1 | +--2 +---E | | | 4--3 +-----------------------------------------F | | | +------C | +---A remember: this is an unrooted tree! Ln Likelihood = -5999.06370 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13409 ( 0.10458, 0.16344) ** 4 B 0.20643 ( 0.17047, 0.24249) ** 4 3 0.07156 ( 0.04399, 0.09897) ** 3 2 0.09156 ( 0.05601, 0.12913) ** 2 1 0.09572 ( 0.05918, 0.13228) ** 1 D 0.12391 ( 0.09568, 0.15223) ** 1 E 0.13676 ( 0.10727, 0.16620) ** 2 F 1.39320 ( 1.17881, 1.60770) ** 3 C 0.22218 ( 0.18339, 0.26090) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 5: Empirical Base Frequencies: A 0.26587 C 0.24776 G 0.25035 T(U) 0.23602 Transition/transversion ratio = 1.000000 +-----B | | +-----D | +---4 | | +---E 1--3 | | +------------------------------------F | +--2 | +-----C | +----A remember: this is an unrooted tree! Ln Likelihood = -5958.96857 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.14585 ( 0.11513, 0.17652) ** 1 B 0.18677 ( 0.15223, 0.22122) ** 1 3 0.09444 ( 0.06622, 0.12265) ** 3 4 0.13996 ( 0.10716, 0.17279) ** 4 D 0.18085 ( 0.14747, 0.21426) ** 4 E 0.11410 ( 0.08674, 0.14145) ** 3 2 0.00007 ( zero, 0.02268) 2 F 1.23118 ( 1.06312, 1.39927) ** 2 C 0.18800 ( 0.15282, 0.22318) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 6: Empirical Base Frequencies: A 0.25621 C 0.24258 G 0.27174 T(U) 0.22947 Transition/transversion ratio = 1.000000 +-----B | | +--------------------------------------F | +--4 | | | +---E 3--2 +-----1 | | +---D | | | +-------C | +---A remember: this is an unrooted tree! Ln Likelihood = -6060.32846 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.12763 ( 0.09893, 0.15639) ** 3 B 0.18044 ( 0.14682, 0.21396) ** 3 2 0.09006 ( 0.05977, 0.12026) ** 2 4 0.01614 ( zero, 0.05170) 4 F 1.29737 ( 1.10631, 1.48832) ** 4 1 0.16908 ( 0.13061, 0.20754) ** 1 E 0.14721 ( 0.11595, 0.17842) ** 1 D 0.14346 ( 0.11262, 0.17440) ** 2 C 0.25440 ( 0.21200, 0.29667) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 7: Empirical Base Frequencies: A 0.26691 C 0.25017 G 0.23188 T(U) 0.25104 Transition/transversion ratio = 1.000000 +-----B | | +-----C | +--1 | | | +---E 3--4 +---2 | | +-----D | | | +--------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -5945.70802 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13443 ( 0.10549, 0.16340) ** 3 B 0.19446 ( 0.15973, 0.22917) ** 3 4 0.05091 ( 0.02401, 0.07750) ** 4 1 0.03354 ( 0.00615, 0.06093) ** 1 C 0.20208 ( 0.16565, 0.23841) ** 1 2 0.14027 ( 0.10716, 0.17328) ** 2 E 0.12514 ( 0.09680, 0.15353) ** 2 D 0.16806 ( 0.13575, 0.20026) ** 4 F 1.29350 ( 1.10942, 1.47772) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 8: Empirical Base Frequencies: A 0.25345 C 0.26898 G 0.24275 T(U) 0.23482 Transition/transversion ratio = 1.000000 +------C +--4 | | +----D | +-----2 | | +------------------------------------F | +--3 | +--E | 1-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6023.53686 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13467 ( 0.10543, 0.16398) ** 1 4 0.07344 ( 0.04683, 0.10017) ** 4 C 0.21514 ( 0.17706, 0.25318) ** 4 2 0.18252 ( 0.14456, 0.22048) ** 2 D 0.15718 ( 0.12531, 0.18912) ** 2 3 0.04101 ( 0.01156, 0.07047) ** 3 F 1.22582 ( 1.05652, 1.39500) ** 3 E 0.10907 ( 0.07855, 0.13971) ** 1 B 0.18007 ( 0.14657, 0.21363) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 9: Empirical Base Frequencies: A 0.27070 C 0.23948 G 0.26501 T(U) 0.22481 Transition/transversion ratio = 1.000000 +------B | | +--------------------------------F 1--3 | | +------C | +--4 | | +----E | +---2 | +----D | +---A remember: this is an unrooted tree! Ln Likelihood = -5995.24602 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13277 ( 0.10326, 0.16229) ** 1 B 0.20962 ( 0.17310, 0.24621) ** 1 3 0.08972 ( 0.06081, 0.11862) ** 3 F 1.10121 ( 0.95650, 1.24588) ** 3 4 0.00404 ( zero, 0.03098) 4 C 0.23112 ( 0.19173, 0.27049) ** 4 2 0.12544 ( 0.09358, 0.15743) ** 2 E 0.15484 ( 0.12366, 0.18606) ** 2 D 0.15078 ( 0.11984, 0.18159) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 10: Empirical Base Frequencies: A 0.28295 C 0.24034 G 0.23551 T(U) 0.24120 Transition/transversion ratio = 1.000000 +-----B | | +------------------------------------F | +--2 | | | +----E 3--4 +---1 | | +-----D | | | +------C | +-----A remember: this is an unrooted tree! Ln Likelihood = -6157.02302 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.18084 ( 0.14633, 0.21537) ** 3 B 0.19201 ( 0.15632, 0.22770) ** 3 4 0.09028 ( 0.06059, 0.11996) ** 4 2 0.02964 ( zero, 0.06367) 2 F 1.21093 ( 1.04133, 1.38046) ** 2 1 0.12929 ( 0.09338, 0.16521) ** 1 E 0.14600 ( 0.11456, 0.17736) ** 1 D 0.18592 ( 0.15109, 0.22081) ** 4 C 0.22058 ( 0.18154, 0.25961) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 11: Empirical Base Frequencies: A 0.23930 C 0.26760 G 0.25552 T(U) 0.23758 Transition/transversion ratio = 1.000000 +-----B | | +---------------------------------F | +--2 | | +----C 4--3 | | +----D | +----1 | +----E | +--A remember: this is an unrooted tree! Ln Likelihood = -5939.96666 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.10145 ( 0.07633, 0.12649) ** 4 B 0.19128 ( 0.15758, 0.22487) ** 4 3 0.08342 ( 0.05611, 0.11082) ** 3 2 0.06516 ( 0.03070, 0.09951) ** 2 F 1.11468 ( 0.96008, 1.26931) ** 2 C 0.16154 ( 0.12414, 0.19894) ** 3 1 0.15041 ( 0.11612, 0.18466) ** 1 D 0.15815 ( 0.12650, 0.18983) ** 1 E 0.14888 ( 0.11804, 0.17963) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 12: Empirical Base Frequencies: A 0.24189 C 0.25759 G 0.26294 T(U) 0.23758 Transition/transversion ratio = 1.000000 +------C +--3 | | +-----------------------------------F | +--2 | | +----E | +---4 | +-----D | 1-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6135.90828 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13140 ( 0.10197, 0.16090) ** 1 3 0.10096 ( 0.07006, 0.13198) ** 3 C 0.22530 ( 0.18553, 0.26512) ** 3 2 0.04814 ( 0.01272, 0.08319) ** 2 F 1.19784 ( 1.02765, 1.36810) ** 2 4 0.12033 ( 0.08333, 0.15733) ** 4 E 0.15390 ( 0.12120, 0.18666) ** 4 D 0.19803 ( 0.16151, 0.23450) ** 1 B 0.18713 ( 0.15260, 0.22164) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 13: Empirical Base Frequencies: A 0.27243 C 0.25017 G 0.25052 T(U) 0.22688 Transition/transversion ratio = 1.000000 +------B | | +----D | +----3 | | +----E 2--1 | | +----C | +--4 | +-------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6038.08595 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.14661 ( 0.11569, 0.17762) ** 2 B 0.21731 ( 0.17989, 0.25486) ** 2 1 0.10387 ( 0.07262, 0.13500) ** 1 3 0.16783 ( 0.13153, 0.20412) ** 3 D 0.13695 ( 0.10668, 0.16722) ** 3 E 0.15919 ( 0.12699, 0.19132) ** 1 4 0.03910 ( 0.00729, 0.07092) ** 4 C 0.14965 ( 0.11458, 0.18462) ** 4 F 1.07310 ( 0.92905, 1.21710) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 14: Empirical Base Frequencies: A 0.26932 C 0.25518 G 0.23810 T(U) 0.23741 Transition/transversion ratio = 1.000000 +-----B | | +----D | +--3 | +--2 +----E | | | 4--1 +------------------------------------F | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6130.90032 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.16446 ( 0.13165, 0.19735) ** 4 B 0.19179 ( 0.15633, 0.22725) ** 4 1 0.10495 ( 0.07325, 0.13663) ** 1 2 0.07086 ( 0.03486, 0.10694) ** 2 3 0.10549 ( 0.06872, 0.14221) ** 3 D 0.15148 ( 0.11941, 0.18355) ** 3 E 0.16529 ( 0.13201, 0.19850) ** 2 F 1.22392 ( 1.05103, 1.39676) ** 1 C 0.20477 ( 0.16699, 0.24255) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 15: Empirical Base Frequencies: A 0.23671 C 0.26104 G 0.25828 T(U) 0.24396 Transition/transversion ratio = 1.000000 +------B | | +-----C 1--4 | | +----------------------------------F | +--3 | | +---E | +---2 | +----D | +----A remember: this is an unrooted tree! Ln Likelihood = -6150.12685 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.14709 ( 0.11553, 0.17857) ** 1 B 0.22421 ( 0.18582, 0.26263) ** 1 4 0.10418 ( 0.07216, 0.13618) ** 4 C 0.20151 ( 0.16372, 0.23924) ** 4 3 0.05791 ( 0.02290, 0.09291) ** 3 F 1.17249 ( 1.00673, 1.33813) ** 3 2 0.11895 ( 0.08176, 0.15603) ** 2 E 0.13909 ( 0.10820, 0.16994) ** 2 D 0.17538 ( 0.14133, 0.20953) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 16: Empirical Base Frequencies: A 0.23827 C 0.25983 G 0.25569 T(U) 0.24620 Transition/transversion ratio = 1.000000 +---D +----2 | +----E +--1 | | +-----C | +--4 | +----------------------------------F | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6048.48728 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13731 ( 0.10738, 0.16725) ** 3 1 0.09526 ( 0.06558, 0.12481) ** 1 2 0.16503 ( 0.12847, 0.20158) ** 2 D 0.13553 ( 0.10561, 0.16533) ** 2 E 0.16912 ( 0.13634, 0.20192) ** 1 4 0.02064 ( zero, 0.05456) 4 C 0.20215 ( 0.16326, 0.24104) ** 4 F 1.15414 ( 0.99699, 1.31116) ** 3 B 0.18888 ( 0.15416, 0.22354) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 17: Empirical Base Frequencies: A 0.23671 C 0.26398 G 0.26363 T(U) 0.23568 Transition/transversion ratio = 1.000000 +-----C +--1 | | +-----D +--2 +-----4 | | +---E | | | +-------------------------------------F | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6053.48317 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15631 ( 0.12504, 0.18765) ** 3 2 0.03068 ( 0.00528, 0.05574) ** 2 1 0.03285 ( 0.00705, 0.05866) ** 1 C 0.21079 ( 0.17306, 0.24854) ** 1 4 0.18002 ( 0.14230, 0.21767) ** 4 D 0.18846 ( 0.15322, 0.22381) ** 4 E 0.13730 ( 0.10627, 0.16826) ** 2 F 1.27759 ( 1.09616, 1.45916) ** 3 B 0.18031 ( 0.14679, 0.21396) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 18: Empirical Base Frequencies: A 0.26018 C 0.25069 G 0.25673 T(U) 0.23240 Transition/transversion ratio = 1.000000 +------B | | +------C | | 3--2 +----E | | +--4 | +--1 +----D | | | +------------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -6093.21076 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.11095 ( 0.08405, 0.13780) ** 3 B 0.22403 ( 0.18667, 0.26148) ** 3 2 0.08476 ( 0.05623, 0.11324) ** 2 C 0.21466 ( 0.17664, 0.25254) ** 2 1 0.07097 ( 0.03543, 0.10796) ** 1 4 0.10238 ( 0.06647, 0.13831) ** 4 E 0.15659 ( 0.12464, 0.18848) ** 4 D 0.15638 ( 0.12438, 0.18830) ** 1 F 1.43221 ( 1.20939, 1.65503) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 19: Empirical Base Frequencies: A 0.26363 C 0.25966 G 0.23430 T(U) 0.24241 Transition/transversion ratio = 1.000000 +-----B | | +---------------------------------F | +--3 | | +-----C 2--1 | | +----E | +---4 | +----D | +----A remember: this is an unrooted tree! Ln Likelihood = -6075.60496 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.16520 ( 0.13220, 0.19825) ** 2 B 0.18992 ( 0.15456, 0.22527) ** 2 1 0.09450 ( 0.06453, 0.12448) ** 1 3 0.03300 ( zero, 0.06672) * 3 F 1.12536 ( 0.97098, 1.27984) ** 3 C 0.19064 ( 0.15166, 0.22962) ** 1 4 0.13617 ( 0.10252, 0.16991) ** 4 E 0.15306 ( 0.12121, 0.18480) ** 4 D 0.16878 ( 0.13563, 0.20201) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 20: Empirical Base Frequencies: A 0.25880 C 0.26398 G 0.25086 T(U) 0.22636 Transition/transversion ratio = 1.000000 +------C +--3 | | +-----------------------------------F | +--2 | | +---E | +--4 | +-----D | 1------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6042.75212 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13941 ( 0.10889, 0.16992) ** 1 3 0.09704 ( 0.06799, 0.12624) ** 3 C 0.21990 ( 0.18158, 0.25838) ** 3 2 0.05266 ( 0.02070, 0.08399) ** 2 F 1.20269 ( 1.03653, 1.36866) ** 2 4 0.07158 ( 0.04072, 0.10244) ** 4 E 0.12999 ( 0.10111, 0.15881) ** 4 D 0.18284 ( 0.14912, 0.21667) ** 1 B 0.21022 ( 0.17327, 0.24720) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 21: Empirical Base Frequencies: A 0.25328 C 0.25656 G 0.24603 T(U) 0.24413 Transition/transversion ratio = 1.000000 +-----------------------------F | +--1 +----D | | +----2 | +--4 +----E | | | +-----C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -5955.97497 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15753 ( 0.12597, 0.18920) ** 3 1 0.07226 ( 0.04466, 0.09973) ** 1 F 0.98019 ( 0.85479, 1.10559) ** 1 4 0.01293 ( zero, 0.03864) 4 2 0.14581 ( 0.11187, 0.17984) ** 2 D 0.15340 ( 0.12213, 0.18460) ** 2 E 0.15195 ( 0.12086, 0.18311) ** 4 C 0.19084 ( 0.15567, 0.22601) ** 3 B 0.19746 ( 0.16216, 0.23283) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 22: Empirical Base Frequencies: A 0.25794 C 0.25397 G 0.23689 T(U) 0.25121 Transition/transversion ratio = 1.000000 +----B | | +---E | +----4 | | +---D 1--3 | | +-------------------------------------F | +--2 | +-----C | +-----A remember: this is an unrooted tree! Ln Likelihood = -6045.47720 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.17901 ( 0.14501, 0.21289) ** 1 B 0.17291 ( 0.13934, 0.20650) ** 1 3 0.09556 ( 0.06522, 0.12590) ** 3 4 0.15507 ( 0.12027, 0.18993) ** 4 E 0.13720 ( 0.10777, 0.16663) ** 4 D 0.13865 ( 0.10914, 0.16820) ** 3 2 0.03826 ( 0.00304, 0.07332) * 2 F 1.24752 ( 1.06821, 1.42682) ** 2 C 0.18421 ( 0.14548, 0.22293) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 23: Empirical Base Frequencies: A 0.24500 C 0.25242 G 0.25190 T(U) 0.25069 Transition/transversion ratio = 1.000000 +-----C | +--2 +----D | | +-----3 | +--1 +---E | | | +--------------------------------F | 4----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6109.59758 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.17273 ( 0.13938, 0.20598) ** 4 2 0.09813 ( 0.06710, 0.12922) ** 2 C 0.19957 ( 0.16224, 0.23697) ** 2 1 0.04707 ( 0.00939, 0.08474) ** 1 3 0.17999 ( 0.13784, 0.22226) ** 3 D 0.16007 ( 0.12745, 0.19264) ** 3 E 0.13866 ( 0.10788, 0.16955) ** 1 F 1.08580 ( 0.93760, 1.23400) ** 4 B 0.16778 ( 0.13493, 0.20065) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 24: Empirical Base Frequencies: A 0.26484 C 0.25604 G 0.25155 T(U) 0.22757 Transition/transversion ratio = 1.000000 +----B +--3 | +----------------------------------------F | | +----E | +---2 4---1 +----D | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6056.27435 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15802 ( 0.12664, 0.18952) ** 4 3 0.01039 ( zero, 0.03963) 3 B 0.15339 ( 0.12159, 0.18519) ** 3 F 1.36407 ( 1.16810, 1.56003) ** 4 1 0.11240 ( 0.08112, 0.14376) ** 1 2 0.13261 ( 0.09930, 0.16584) ** 2 E 0.16226 ( 0.13005, 0.19446) ** 2 D 0.15107 ( 0.11981, 0.18231) ** 1 C 0.21892 ( 0.18033, 0.25753) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 25: Empirical Base Frequencies: A 0.25638 C 0.25086 G 0.25983 T(U) 0.23292 Transition/transversion ratio = 1.000000 +-------------------------------------F +--2 | | +----D +---1 +----4 | | +----E | | | +-----C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6045.86724 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15202 ( 0.12057, 0.18335) ** 3 1 0.10963 ( 0.07847, 0.14076) ** 1 2 0.00769 ( zero, 0.03921) 2 F 1.26755 ( 1.08857, 1.44653) ** 2 4 0.14746 ( 0.11227, 0.18264) ** 4 D 0.14751 ( 0.11682, 0.17821) ** 4 E 0.14925 ( 0.11846, 0.18000) ** 1 C 0.19429 ( 0.15802, 0.23044) ** 3 B 0.19437 ( 0.15919, 0.22956) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 26: Empirical Base Frequencies: A 0.24827 C 0.24862 G 0.26622 T(U) 0.23689 Transition/transversion ratio = 1.000000 +----B | | +---------------------------------------F | | 4--3 +----E | | +----2 | +--1 +------D | | | +------C | +---A remember: this is an unrooted tree! Ln Likelihood = -6108.45636 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13942 ( 0.10937, 0.16938) ** 4 B 0.16762 ( 0.13515, 0.20000) ** 4 3 0.02347 ( zero, 0.05254) 3 F 1.30479 ( 1.11740, 1.49217) ** 3 1 0.08168 ( 0.04996, 0.11340) ** 1 2 0.16352 ( 0.12626, 0.20090) ** 2 E 0.15764 ( 0.12393, 0.19128) ** 2 D 0.20753 ( 0.16971, 0.24544) ** 1 C 0.20696 ( 0.16889, 0.24514) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 27: Empirical Base Frequencies: A 0.25414 C 0.25052 G 0.26691 T(U) 0.22843 Transition/transversion ratio = 1.000000 +---E +--4 +--2 +----D | | +--1 +-------------------------------F | | | +-----C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -5922.42136 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.14390 ( 0.11337, 0.17433) ** 3 1 0.08238 ( 0.05525, 0.10940) ** 1 2 0.05286 ( 0.02119, 0.08464) ** 2 4 0.10483 ( 0.07163, 0.13803) ** 4 E 0.11710 ( 0.08954, 0.14456) ** 4 D 0.16024 ( 0.12884, 0.19173) ** 2 F 1.06765 ( 0.92587, 1.20937) ** 1 C 0.18707 ( 0.15198, 0.22204) ** 3 B 0.19945 ( 0.16396, 0.23505) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 28: Empirical Base Frequencies: A 0.24448 C 0.26691 G 0.25673 T(U) 0.23188 Transition/transversion ratio = 1.000000 +-----B | | +----------------------------------F | | 1--4 +---E | | +--3 | +--2 +-----D | | | +------C | +---A remember: this is an unrooted tree! Ln Likelihood = -5955.41403 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.12256 ( 0.09457, 0.15054) ** 1 B 0.20054 ( 0.16537, 0.23569) ** 1 4 0.07652 ( 0.05073, 0.10230) ** 4 F 1.16120 ( 1.00613, 1.31629) ** 4 2 0.00007 ( zero, 0.02113) 2 3 0.10835 ( 0.07889, 0.13780) ** 3 E 0.13583 ( 0.10618, 0.16539) ** 3 D 0.18428 ( 0.15034, 0.21826) ** 2 C 0.23582 ( 0.19666, 0.27495) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 29: Empirical Base Frequencies: A 0.26484 C 0.24241 G 0.26363 T(U) 0.22912 Transition/transversion ratio = 1.000000 +------C +--2 | | +-----------------------------------F | +--3 | | +-----D | +---4 | +----E | 1-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6063.10618 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13111 ( 0.10239, 0.15974) ** 1 2 0.08493 ( 0.05630, 0.11366) ** 2 C 0.22233 ( 0.18352, 0.26115) ** 2 3 0.03564 ( 0.00195, 0.06922) * 3 F 1.17834 ( 1.01490, 1.34184) ** 3 4 0.13551 ( 0.09889, 0.17213) ** 4 D 0.17941 ( 0.14491, 0.21379) ** 4 E 0.15503 ( 0.12293, 0.18723) ** 1 B 0.17869 ( 0.14552, 0.21190) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 30: Empirical Base Frequencies: A 0.24500 C 0.25880 G 0.25069 T(U) 0.24551 Transition/transversion ratio = 1.000000 +-----C +---2 | | +------------------------------------------F | +--1 | | +----D | +---4 | +----E | 3------B | +----A remember: this is an unrooted tree! Ln Likelihood = -6045.93855 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.14940 ( 0.11792, 0.18101) ** 3 2 0.10860 ( 0.07726, 0.14009) ** 2 C 0.18541 ( 0.14995, 0.22089) ** 2 1 0.03060 ( zero, 0.06213) 1 F 1.42804 ( 1.20438, 1.65148) ** 1 4 0.11569 ( 0.08183, 0.14958) ** 4 D 0.15228 ( 0.12117, 0.18343) ** 4 E 0.14519 ( 0.11478, 0.17560) ** 3 B 0.21188 ( 0.17470, 0.24896) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 31: Empirical Base Frequencies: A 0.24707 C 0.26656 G 0.24776 T(U) 0.23861 Transition/transversion ratio = 1.000000 +----------------------------------F +--4 | +----C +--2 | | +----D | +-----1 | +----E | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6076.20171 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.14266 ( 0.11232, 0.17299) ** 3 2 0.08552 ( 0.05668, 0.11447) ** 2 4 0.05901 ( 0.02294, 0.09495) ** 4 F 1.16457 ( 1.00141, 1.32781) ** 4 C 0.16167 ( 0.12353, 0.19980) ** 2 1 0.18285 ( 0.14413, 0.22163) ** 1 D 0.15319 ( 0.12115, 0.18520) ** 1 E 0.16753 ( 0.13418, 0.20089) ** 3 B 0.18316 ( 0.14909, 0.21727) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 32: Empirical Base Frequencies: A 0.26208 C 0.25104 G 0.25311 T(U) 0.23378 Transition/transversion ratio = 1.000000 +-----B | | +-------------------------------------F | +--3 | | | +-----D 2--1 +----4 | | +----E | | | +----C | +---A remember: this is an unrooted tree! Ln Likelihood = -6029.84528 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.13771 ( 0.10850, 0.16690) ** 2 B 0.19267 ( 0.15838, 0.22702) ** 2 1 0.07503 ( 0.04861, 0.10157) ** 1 3 0.03239 ( zero, 0.06656) 3 F 1.23709 ( 1.06164, 1.41248) ** 3 4 0.15032 ( 0.11297, 0.18767) ** 4 D 0.18301 ( 0.14821, 0.21779) ** 4 E 0.14221 ( 0.11110, 0.17338) ** 1 C 0.18229 ( 0.14774, 0.21692) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 33: Empirical Base Frequencies: A 0.27329 C 0.25224 G 0.25086 T(U) 0.22360 Transition/transversion ratio = 1.000000 +----E +----2 +--1 +----D | | +--4 +------C | | | +------B | 3-------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -6146.09194 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13607 ( 0.10507, 0.16876) ** 3 4 0.02271 ( zero, 0.05189) 4 1 0.07329 ( 0.04412, 0.10243) ** 1 2 0.17093 ( 0.13366, 0.20812) ** 2 E 0.15908 ( 0.12632, 0.19183) ** 2 D 0.15945 ( 0.12680, 0.19218) ** 1 C 0.23506 ( 0.19476, 0.27539) ** 4 B 0.21701 ( 0.17961, 0.25441) ** 3 F 1.25332 ( 1.07939, 1.42726) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 34: Empirical Base Frequencies: A 0.25983 C 0.26139 G 0.22774 T(U) 0.25104 Transition/transversion ratio = 1.000000 +-----B | | +-----------------------------------F | +--2 | | | +-----E 4---1 +--3 | | +---D | | | +-----C | +----A remember: this is an unrooted tree! Ln Likelihood = -6040.46991 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14542 ( 0.11449, 0.17640) ** 4 B 0.19356 ( 0.15815, 0.22888) ** 4 1 0.11246 ( 0.08127, 0.14352) ** 1 2 0.04678 ( 0.01512, 0.07868) ** 2 F 1.21101 ( 1.04018, 1.38179) ** 2 3 0.08942 ( 0.05719, 0.12165) ** 3 E 0.18138 ( 0.14756, 0.21518) ** 3 D 0.13052 ( 0.10134, 0.15984) ** 1 C 0.19746 ( 0.16091, 0.23398) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 35: Empirical Base Frequencies: A 0.26449 C 0.24931 G 0.23948 T(U) 0.24672 Transition/transversion ratio = 1.000000 +----B | | +------------------------------------F | +--3 | | | +----E 1--4 +--2 | | +----D | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6032.05376 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.15431 ( 0.12329, 0.18527) ** 1 B 0.16828 ( 0.13601, 0.20055) ** 1 4 0.07379 ( 0.04700, 0.10074) ** 4 3 0.06386 ( 0.03105, 0.09612) ** 3 F 1.22389 ( 1.05226, 1.39540) ** 3 2 0.08305 ( 0.05007, 0.11603) ** 2 E 0.16315 ( 0.13075, 0.19552) ** 2 D 0.15864 ( 0.12678, 0.19063) ** 4 C 0.22364 ( 0.18521, 0.26211) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 36: Empirical Base Frequencies: A 0.25069 C 0.26950 G 0.25224 T(U) 0.22757 Transition/transversion ratio = 1.000000 +-----B | | +----------------------------------------F | +--3 | | | +---E 2---1 +--4 | | +---D | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6038.41775 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.15594 ( 0.12354, 0.18847) ** 2 B 0.20570 ( 0.16886, 0.24267) ** 2 1 0.11340 ( 0.08110, 0.14564) ** 1 3 0.05879 ( 0.02647, 0.09192) ** 3 F 1.36351 ( 1.15991, 1.56718) ** 3 4 0.07654 ( 0.04431, 0.10877) ** 4 E 0.13178 ( 0.10327, 0.16025) ** 4 D 0.13353 ( 0.10497, 0.16220) ** 1 C 0.22395 ( 0.18459, 0.26324) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 37: Empirical Base Frequencies: A 0.24655 C 0.27381 G 0.25276 T(U) 0.22688 Transition/transversion ratio = 1.000000 +----C +--2 | +-----------------------------------F +--1 | | +-------D | +----4 | +----E | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6160.13966 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.12727 ( 0.09849, 0.15611) ** 3 1 0.10471 ( 0.07349, 0.13586) ** 1 2 0.05725 ( 0.02197, 0.09253) ** 2 C 0.15856 ( 0.12073, 0.19626) ** 2 F 1.20193 ( 1.03169, 1.37208) ** 1 4 0.14928 ( 0.11267, 0.18577) ** 4 D 0.24368 ( 0.20268, 0.28464) ** 4 E 0.15341 ( 0.12005, 0.18678) ** 3 B 0.19154 ( 0.15680, 0.22620) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 38: Empirical Base Frequencies: A 0.25362 C 0.25207 G 0.24845 T(U) 0.24586 Transition/transversion ratio = 1.000000 +----------------------------------------F +--3 | | +----E +--1 +--2 | | +----D | | | +-----C | 4------B | +----A remember: this is an unrooted tree! Ln Likelihood = -6063.45418 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15233 ( 0.12091, 0.18373) ** 4 1 0.09655 ( 0.06620, 0.12698) ** 1 3 0.08240 ( 0.05059, 0.11308) ** 3 F 1.36996 ( 1.16696, 1.57241) ** 3 2 0.04416 ( 0.01353, 0.07479) ** 2 E 0.16684 ( 0.13419, 0.19951) ** 2 D 0.15912 ( 0.12716, 0.19109) ** 1 C 0.19408 ( 0.15835, 0.22983) ** 4 B 0.21125 ( 0.17449, 0.24806) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 39: Empirical Base Frequencies: A 0.26173 C 0.23551 G 0.27743 T(U) 0.22533 Transition/transversion ratio = 1.000000 +-----B | | +----D | +-----1 | | +----E 3--4 | | +-------------------------------F | +--2 | +----C | +----A remember: this is an unrooted tree! Ln Likelihood = -6085.50724 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15428 ( 0.12192, 0.18674) ** 3 B 0.19519 ( 0.15918, 0.23112) ** 3 4 0.09999 ( 0.06968, 0.13040) ** 4 1 0.17914 ( 0.14023, 0.21813) ** 1 D 0.17414 ( 0.14011, 0.20808) ** 1 E 0.15204 ( 0.11996, 0.18419) ** 4 2 0.02643 ( zero, 0.05901) 2 F 1.07784 ( 0.93337, 1.22229) ** 2 C 0.17449 ( 0.13720, 0.21178) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 40: Empirical Base Frequencies: A 0.25293 C 0.25518 G 0.26121 T(U) 0.23068 Transition/transversion ratio = 1.000000 +-----B | | +---------------------------------F | +--3 | | | +----E 4--2 +-----1 | | +----D | | | +------C | +---A remember: this is an unrooted tree! Ln Likelihood = -6004.75871 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.11972 ( 0.09205, 0.14740) ** 4 B 0.18794 ( 0.15408, 0.22185) ** 4 2 0.08126 ( 0.05249, 0.10992) ** 2 3 0.03869 ( 0.00218, 0.07534) * 3 F 1.12905 ( 0.97356, 1.28454) ** 3 1 0.17803 ( 0.13739, 0.21868) ** 1 E 0.14914 ( 0.11724, 0.18099) ** 1 D 0.14627 ( 0.11462, 0.17794) ** 2 C 0.21444 ( 0.17622, 0.25270) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 41: Empirical Base Frequencies: A 0.25345 C 0.24569 G 0.26656 T(U) 0.23430 Transition/transversion ratio = 1.000000 +------C | +--3 +----D | | +----2 | +--1 +---E | | | +----------------------------------F | 4-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -5921.00896 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13342 ( 0.10481, 0.16205) ** 4 3 0.08711 ( 0.05924, 0.11499) ** 3 C 0.21661 ( 0.17916, 0.25408) ** 3 1 0.02001 ( zero, 0.05130) 1 2 0.13713 ( 0.10301, 0.17124) ** 2 D 0.15330 ( 0.12252, 0.18411) ** 2 E 0.12038 ( 0.09265, 0.14812) ** 1 F 1.16435 ( 1.00752, 1.32124) ** 4 B 0.17635 ( 0.14368, 0.20894) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 42: Empirical Base Frequencies: A 0.24810 C 0.27329 G 0.25328 T(U) 0.22533 Transition/transversion ratio = 1.000000 +------B | | +-----C | +--2 | | +--------------------------------F 4--1 | | +----D | +----3 | +----E | +---A remember: this is an unrooted tree! Ln Likelihood = -6016.46984 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.11933 ( 0.09172, 0.14685) ** 4 B 0.21097 ( 0.17490, 0.24705) ** 4 1 0.08529 ( 0.05713, 0.11334) ** 1 2 0.03921 ( 0.00666, 0.07188) ** 2 C 0.16937 ( 0.13296, 0.20579) ** 2 F 1.09483 ( 0.94912, 1.24054) ** 1 3 0.16905 ( 0.13259, 0.20545) ** 3 D 0.15231 ( 0.12095, 0.18367) ** 3 E 0.15801 ( 0.12603, 0.18990) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 43: Empirical Base Frequencies: A 0.26398 C 0.25449 G 0.25569 T(U) 0.22585 Transition/transversion ratio = 1.000000 +-----D +--1 +--2 +----E | | +--3 +------------------------------------F | | | +-----C | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6038.36263 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14787 ( 0.11726, 0.17851) ** 4 3 0.06922 ( 0.04293, 0.09564) ** 3 2 0.05022 ( 0.01816, 0.08229) ** 2 1 0.09724 ( 0.06348, 0.13113) ** 1 D 0.18788 ( 0.15282, 0.22292) ** 1 E 0.15340 ( 0.12127, 0.18554) ** 2 F 1.21063 ( 1.04089, 1.38049) ** 3 C 0.19985 ( 0.16353, 0.23620) ** 4 B 0.19500 ( 0.15990, 0.22997) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 44: Empirical Base Frequencies: A 0.25000 C 0.25017 G 0.26035 T(U) 0.23948 Transition/transversion ratio = 1.000000 +----B | | +------C 1--3 | | +--------------------------------F | +--4 | | +---E | +--2 | +-----D | +---A remember: this is an unrooted tree! Ln Likelihood = -6015.03406 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13828 ( 0.10868, 0.16793) ** 1 B 0.16812 ( 0.13568, 0.20056) ** 1 3 0.08962 ( 0.06083, 0.11834) ** 3 C 0.22294 ( 0.18396, 0.26190) ** 3 4 0.06927 ( 0.03526, 0.10340) ** 4 F 1.10533 ( 0.95416, 1.25653) ** 4 2 0.09445 ( 0.05919, 0.12971) ** 2 E 0.13457 ( 0.10481, 0.16425) ** 2 D 0.17759 ( 0.14400, 0.21124) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 45: Empirical Base Frequencies: A 0.25759 C 0.25880 G 0.25224 T(U) 0.23137 Transition/transversion ratio = 1.000000 +-----D +----4 +--1 +---E | | +--3 +-------C | | | +-----------------------------------F | 2----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6012.66850 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.13210 ( 0.10317, 0.16109) ** 2 3 0.05490 ( 0.02759, 0.08209) ** 3 1 0.02876 ( 0.00090, 0.05663) * 1 4 0.17072 ( 0.13385, 0.20749) ** 4 D 0.17212 ( 0.13903, 0.20522) ** 4 E 0.12506 ( 0.09631, 0.15385) ** 1 C 0.24794 ( 0.20668, 0.28924) ** 3 F 1.19237 ( 1.02876, 1.35602) ** 2 B 0.16801 ( 0.13583, 0.20029) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 46: Empirical Base Frequencies: A 0.25000 C 0.25362 G 0.25604 T(U) 0.24034 Transition/transversion ratio = 1.000000 +-----C +--1 | | +------------------------------------F | +--4 | | +---E | +---3 | +----D | 2----B | +----A remember: this is an unrooted tree! Ln Likelihood = -5989.13022 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.17361 ( 0.14075, 0.20645) ** 2 1 0.08545 ( 0.05749, 0.11342) ** 1 C 0.19818 ( 0.16212, 0.23426) ** 1 4 0.02635 ( zero, 0.05721) 4 F 1.21645 ( 1.04656, 1.38636) ** 4 3 0.12224 ( 0.08892, 0.15556) ** 3 E 0.14015 ( 0.10983, 0.17051) ** 3 D 0.16506 ( 0.13258, 0.19746) ** 2 B 0.16093 ( 0.12911, 0.19267) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 47: Empirical Base Frequencies: A 0.26087 C 0.25466 G 0.24655 T(U) 0.23792 Transition/transversion ratio = 1.000000 +------C +--3 | | +-----------------------------F | +--1 | | +----E | +---2 | +-----D | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6003.45551 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14392 ( 0.11348, 0.17432) ** 4 3 0.08476 ( 0.05672, 0.11272) ** 3 C 0.22054 ( 0.18227, 0.25875) ** 3 1 0.01749 ( zero, 0.04826) 1 F 0.98110 ( 0.85399, 1.10814) ** 1 2 0.13483 ( 0.10042, 0.16924) ** 2 E 0.14519 ( 0.11395, 0.17639) ** 2 D 0.17470 ( 0.14101, 0.20851) ** 4 B 0.19054 ( 0.15587, 0.22521) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 48: Empirical Base Frequencies: A 0.25035 C 0.26587 G 0.24741 T(U) 0.23637 Transition/transversion ratio = 1.000000 +------C | +--3 +------D | | +----1 | +--2 +---E | | | +---------------------------------F | 4----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6083.80013 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.12999 ( 0.10102, 0.15903) ** 4 3 0.09990 ( 0.06970, 0.13008) ** 3 C 0.22016 ( 0.18100, 0.25930) ** 3 2 0.01948 ( zero, 0.05321) 2 1 0.16243 ( 0.12384, 0.20102) ** 1 D 0.21520 ( 0.17696, 0.25348) ** 1 E 0.13240 ( 0.10105, 0.16368) ** 2 F 1.12507 ( 0.97133, 1.27872) ** 4 B 0.16956 ( 0.13700, 0.20214) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 49: Empirical Base Frequencies: A 0.26484 C 0.24741 G 0.25397 T(U) 0.23378 Transition/transversion ratio = 1.000000 +----D +--1 +--4 +----E | | +--2 +-----------------------------------F | | | +------C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6029.90065 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15680 ( 0.12487, 0.18887) ** 3 2 0.08133 ( 0.05365, 0.10916) ** 2 4 0.03324 ( 0.00249, 0.06362) * 4 1 0.10709 ( 0.07434, 0.13984) ** 1 D 0.15660 ( 0.12507, 0.18805) ** 1 E 0.14326 ( 0.11291, 0.17347) ** 4 F 1.19458 ( 1.02978, 1.35937) ** 2 C 0.21411 ( 0.17629, 0.25198) ** 3 B 0.20193 ( 0.16588, 0.23799) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 50: Empirical Base Frequencies: A 0.26121 C 0.24551 G 0.24948 T(U) 0.24379 Transition/transversion ratio = 1.000000 +----B | | +------C 3--4 | | +----------------------------------F | +--1 | | +----D | +----2 | +---E | +---A remember: this is an unrooted tree! Ln Likelihood = -6021.07958 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13914 ( 0.10936, 0.16878) ** 3 B 0.16982 ( 0.13727, 0.20235) ** 3 4 0.08155 ( 0.05388, 0.10924) ** 4 C 0.21722 ( 0.17909, 0.25546) ** 4 1 0.03269 ( zero, 0.06770) * 1 F 1.16099 ( 1.00188, 1.32007) ** 1 2 0.14971 ( 0.11164, 0.18778) ** 2 D 0.16884 ( 0.13596, 0.20163) ** 2 E 0.14236 ( 0.11190, 0.17286) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 51: Empirical Base Frequencies: A 0.25017 C 0.25880 G 0.25035 T(U) 0.24068 Transition/transversion ratio = 1.000000 +------C +--1 | | +-------------------------------------F | +--2 | | +----D | +----4 | +----E | 3----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6106.55974 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.16063 ( 0.12827, 0.19286) ** 3 1 0.09208 ( 0.06161, 0.12259) ** 1 C 0.23727 ( 0.19692, 0.27765) ** 1 2 0.02335 ( zero, 0.05768) 2 F 1.24868 ( 1.07005, 1.42728) ** 2 4 0.14335 ( 0.10610, 0.18060) ** 4 D 0.17398 ( 0.13997, 0.20788) ** 4 E 0.15065 ( 0.11870, 0.18263) ** 3 B 0.17237 ( 0.13912, 0.20567) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 52: Empirical Base Frequencies: A 0.22774 C 0.27398 G 0.26018 T(U) 0.23810 Transition/transversion ratio = 1.000000 +------B | | +-----C | | 3--2 +---E | | +--1 | +--4 +----D | | | +-----------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -6035.14017 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13693 ( 0.10717, 0.16659) ** 3 B 0.20864 ( 0.17228, 0.24503) ** 3 2 0.07847 ( 0.05087, 0.10601) ** 2 C 0.21240 ( 0.17474, 0.24996) ** 2 4 0.07718 ( 0.04357, 0.11104) ** 4 1 0.07610 ( 0.04258, 0.10962) ** 1 E 0.14191 ( 0.11149, 0.17241) ** 1 D 0.16288 ( 0.13065, 0.19515) ** 4 F 1.37010 ( 1.16144, 1.57885) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 53: Empirical Base Frequencies: A 0.25656 C 0.26915 G 0.25466 T(U) 0.21963 Transition/transversion ratio = 1.000000 +-----C +--4 | | +----------------------------------F | +--3 | | +---E | +---2 | +-----D | 1-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6068.63357 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.15468 ( 0.12332, 0.18596) ** 1 4 0.08687 ( 0.05763, 0.11601) ** 4 C 0.17695 ( 0.14226, 0.21162) ** 4 3 0.06007 ( 0.02359, 0.09668) ** 3 F 1.14964 ( 0.99001, 1.30925) ** 3 2 0.13800 ( 0.09936, 0.17664) ** 2 E 0.13769 ( 0.10639, 0.16895) ** 2 D 0.19788 ( 0.16153, 0.23426) ** 1 B 0.18338 ( 0.14936, 0.21742) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 54: Empirical Base Frequencies: A 0.25138 C 0.22930 G 0.25966 T(U) 0.25966 Transition/transversion ratio = 1.000000 +----E +---1 +--4 +----D | | +--2 +-----------------------------------F | | | +-------C | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6010.88903 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.12756 ( 0.09967, 0.15551) ** 3 2 0.05563 ( 0.03098, 0.08042) ** 2 4 0.04115 ( 0.00838, 0.07366) ** 4 1 0.11951 ( 0.08449, 0.15453) ** 1 E 0.15284 ( 0.12163, 0.18409) ** 1 D 0.15096 ( 0.11991, 0.18193) ** 4 F 1.18874 ( 1.02555, 1.35204) ** 2 C 0.24975 ( 0.20936, 0.29021) ** 3 B 0.19685 ( 0.16226, 0.23130) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 55: Empirical Base Frequencies: A 0.24224 C 0.24189 G 0.27640 T(U) 0.23948 Transition/transversion ratio = 1.000000 +------C +--1 | | +-----D | +---2 | | +--------------------------------------F | +--3 | +---E | 4------B | +----A remember: this is an unrooted tree! Ln Likelihood = -6136.75216 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14548 ( 0.11446, 0.17647) ** 4 1 0.07467 ( 0.04726, 0.10198) ** 1 C 0.22760 ( 0.18860, 0.26666) ** 1 2 0.13254 ( 0.09861, 0.16650) ** 2 D 0.18053 ( 0.14638, 0.21475) ** 2 3 0.04838 ( 0.01657, 0.08003) ** 3 F 1.28957 ( 1.10483, 1.47430) ** 3 E 0.12330 ( 0.09051, 0.15609) ** 4 B 0.22520 ( 0.18693, 0.26346) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 56: Empirical Base Frequencies: A 0.26018 C 0.25035 G 0.26881 T(U) 0.22067 Transition/transversion ratio = 1.000000 +-----B | | +---E | +----3 | +--1 +-----D | | | 4--2 +-----C | | | +-------------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6015.68470 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15248 ( 0.12116, 0.18389) ** 4 B 0.17659 ( 0.14307, 0.21018) ** 4 2 0.07944 ( 0.04998, 0.10890) ** 2 1 0.01976 ( zero, 0.04782) 1 3 0.16087 ( 0.12515, 0.19667) ** 3 E 0.13151 ( 0.10156, 0.16150) ** 3 D 0.19017 ( 0.15499, 0.22524) ** 1 C 0.17866 ( 0.14373, 0.21367) ** 2 F 1.26903 ( 1.08922, 1.44876) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 57: Empirical Base Frequencies: A 0.25345 C 0.25914 G 0.25276 T(U) 0.23464 Transition/transversion ratio = 1.000000 +-----B | | +------C 1--2 | | +-----------------------------------F | +--3 | | +----E | +--4 | +----D | +----A remember: this is an unrooted tree! Ln Likelihood = -6100.05780 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.15425 ( 0.12288, 0.18574) ** 1 B 0.18849 ( 0.15392, 0.22304) ** 1 2 0.08095 ( 0.05266, 0.10913) ** 2 C 0.21231 ( 0.17470, 0.24990) ** 2 3 0.09020 ( 0.05496, 0.12555) ** 3 F 1.17127 ( 1.00903, 1.33351) ** 3 4 0.07492 ( 0.04009, 0.10975) ** 4 E 0.16225 ( 0.12947, 0.19504) ** 4 D 0.17334 ( 0.13957, 0.20712) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 58: Empirical Base Frequencies: A 0.26104 C 0.24017 G 0.25449 T(U) 0.24431 Transition/transversion ratio = 1.000000 +------------------------------------F +--3 | +---B | | +-----C 4--1 | | +----E | +----2 | +---D | +-----A remember: this is an unrooted tree! Ln Likelihood = -5990.44831 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.17779 ( 0.14433, 0.21133) ** 4 3 0.02841 ( zero, 0.05826) * 3 F 1.23231 ( 1.06184, 1.40288) ** 3 B 0.13614 ( 0.10419, 0.16808) ** 4 1 0.08088 ( 0.05284, 0.10898) ** 1 C 0.18136 ( 0.14659, 0.21607) ** 1 2 0.14488 ( 0.11106, 0.17871) ** 2 E 0.17803 ( 0.14427, 0.21180) ** 2 D 0.14588 ( 0.11496, 0.17670) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 59: Empirical Base Frequencies: A 0.25380 C 0.25845 G 0.25725 T(U) 0.23050 Transition/transversion ratio = 1.000000 +-----B | | +----C | +--1 | | | +----E 3--2 +----4 | | +-----D | | | +----------------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -5979.69256 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.14849 ( 0.11832, 0.17875) ** 3 B 0.18259 ( 0.14923, 0.21604) ** 3 2 0.02959 ( 0.00563, 0.05317) ** 2 1 0.03400 ( 0.01006, 0.05795) ** 1 C 0.16867 ( 0.13586, 0.20155) ** 1 4 0.15397 ( 0.11925, 0.18869) ** 4 E 0.14237 ( 0.11181, 0.17296) ** 4 D 0.19741 ( 0.16182, 0.23287) ** 2 F 1.35412 ( 1.15449, 1.55375) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 60: Empirical Base Frequencies: A 0.25656 C 0.27191 G 0.25638 T(U) 0.21515 Transition/transversion ratio = 1.000000 +----D +--1 +--2 +-----E | | +--3 +-------------------------------F | | | +-----C | 4-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6048.66981 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.12887 ( 0.10043, 0.15734) ** 4 3 0.08447 ( 0.05644, 0.11240) ** 3 2 0.05957 ( 0.02618, 0.09297) ** 2 1 0.10096 ( 0.06642, 0.13537) ** 1 D 0.16257 ( 0.12967, 0.19553) ** 1 E 0.18136 ( 0.14665, 0.21594) ** 2 F 1.06144 ( 0.91994, 1.20287) ** 3 C 0.19840 ( 0.16226, 0.23450) ** 4 B 0.20646 ( 0.17088, 0.24213) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 61: Empirical Base Frequencies: A 0.25380 C 0.28157 G 0.22723 T(U) 0.23741 Transition/transversion ratio = 1.000000 +-----B | | +----C | | 4--3 +-----D | | +--1 | +--2 +----E | | | +--------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6050.92490 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15572 ( 0.12393, 0.18748) ** 4 B 0.19928 ( 0.16365, 0.23505) ** 4 3 0.09500 ( 0.06632, 0.12368) ** 3 C 0.17023 ( 0.13651, 0.20382) ** 3 2 0.06702 ( 0.03514, 0.09903) ** 2 1 0.06956 ( 0.03748, 0.10164) ** 1 D 0.18811 ( 0.15337, 0.22292) ** 1 E 0.16904 ( 0.13585, 0.20209) ** 2 F 1.09143 ( 0.94536, 1.23755) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 62: Empirical Base Frequencies: A 0.24672 C 0.27122 G 0.25397 T(U) 0.22809 Transition/transversion ratio = 1.000000 +-----------------------------------F +--2 | | +----E +--3 +--1 | | +----D | | | +------C | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6092.49580 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.16234 ( 0.12998, 0.19469) ** 4 3 0.09484 ( 0.06502, 0.12454) ** 3 2 0.05350 ( 0.02274, 0.08437) ** 2 F 1.17706 ( 1.01414, 1.33989) ** 2 1 0.07983 ( 0.04810, 0.11156) ** 1 E 0.16303 ( 0.13070, 0.19533) ** 1 D 0.17069 ( 0.13762, 0.20377) ** 3 C 0.22407 ( 0.18524, 0.26277) ** 4 B 0.17907 ( 0.14525, 0.21300) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 63: Empirical Base Frequencies: A 0.25138 C 0.24275 G 0.26173 T(U) 0.24413 Transition/transversion ratio = 1.000000 +-----B | | +-----C | | 4---2 +----D | | +--3 | +--1 +----E | | | +-------------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6133.78227 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15516 ( 0.12279, 0.18742) ** 4 B 0.19154 ( 0.15602, 0.22708) ** 4 2 0.11031 ( 0.07746, 0.14313) ** 2 C 0.19987 ( 0.16182, 0.23789) ** 2 1 0.08781 ( 0.05097, 0.12550) ** 1 3 0.10391 ( 0.06597, 0.14185) ** 3 D 0.16405 ( 0.13101, 0.19702) ** 3 E 0.14197 ( 0.11082, 0.17308) ** 1 F 1.25721 ( 1.07117, 1.44325) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 64: Empirical Base Frequencies: A 0.26001 C 0.27778 G 0.24206 T(U) 0.22015 Transition/transversion ratio = 1.000000 +-----B | | +----D | +----4 | | +-----E 1--3 | | +----------------------------------F | +--2 | +-----C | +----A remember: this is an unrooted tree! Ln Likelihood = -6055.83739 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.15290 ( 0.12218, 0.18359) ** 1 B 0.17809 ( 0.14500, 0.21109) ** 1 3 0.06542 ( 0.03886, 0.09201) ** 3 4 0.16610 ( 0.12991, 0.20236) ** 4 D 0.15542 ( 0.12275, 0.18819) ** 4 E 0.19050 ( 0.15469, 0.22625) ** 3 2 0.01541 ( zero, 0.04755) 2 F 1.15497 ( 0.99851, 1.31151) ** 2 C 0.19926 ( 0.16174, 0.23677) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 65: Empirical Base Frequencies: A 0.26501 C 0.24827 G 0.27208 T(U) 0.21463 Transition/transversion ratio = 1.000000 +-----B | | +---------------------------------F | +--3 | | | +---E 4--1 +--2 | | +-----D | | | +-------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6045.05212 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14769 ( 0.11702, 0.17840) ** 4 B 0.20422 ( 0.16843, 0.24000) ** 4 1 0.05619 ( 0.03118, 0.08112) ** 1 3 0.04464 ( 0.01403, 0.07535) ** 3 F 1.13218 ( 0.97686, 1.28743) ** 3 2 0.09729 ( 0.06431, 0.13028) ** 2 E 0.14260 ( 0.11196, 0.17323) ** 2 D 0.19251 ( 0.15747, 0.22767) ** 1 C 0.23819 ( 0.19854, 0.27771) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 66: Empirical Base Frequencies: A 0.25397 C 0.25776 G 0.25328 T(U) 0.23499 Transition/transversion ratio = 1.000000 +------C +--4 | | +-----------------------------------F | +--2 | | +-----D | +--3 | +---E | 1------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6144.42940 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.13509 ( 0.10523, 0.16485) ** 1 4 0.08501 ( 0.05527, 0.11470) ** 4 C 0.23617 ( 0.19579, 0.27654) ** 4 2 0.07069 ( 0.03544, 0.10608) ** 2 F 1.19914 ( 1.02943, 1.36895) ** 2 3 0.09692 ( 0.06089, 0.13294) ** 3 D 0.19038 ( 0.15531, 0.22549) ** 3 E 0.13510 ( 0.10496, 0.16522) ** 1 B 0.22231 ( 0.18453, 0.26022) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 67: Empirical Base Frequencies: A 0.25983 C 0.23999 G 0.26363 T(U) 0.23654 Transition/transversion ratio = 1.000000 +-----B | | +-------C | | 4--2 +---E | | +----1 | +--3 +----D | | | +-----------------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6133.33699 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14987 ( 0.11834, 0.18128) ** 4 B 0.19139 ( 0.15608, 0.22665) ** 4 2 0.08733 ( 0.05805, 0.11668) ** 2 C 0.24643 ( 0.20501, 0.28789) ** 2 3 0.03113 ( zero, 0.06651) 3 1 0.14241 ( 0.10475, 0.18007) ** 1 E 0.13491 ( 0.10489, 0.16501) ** 1 D 0.17881 ( 0.14484, 0.21278) ** 3 F 1.37549 ( 1.16894, 1.58205) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 68: Empirical Base Frequencies: A 0.27553 C 0.25190 G 0.24293 T(U) 0.22964 Transition/transversion ratio = 1.000000 +-----D +--1 +--2 +----E | | +--3 +-------------------------------------F | | | +------C | 4------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6046.62989 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13882 ( 0.10926, 0.16850) ** 4 3 0.05805 ( 0.03312, 0.08285) ** 3 2 0.05001 ( 0.01851, 0.08279) ** 2 1 0.10006 ( 0.06639, 0.13375) ** 1 D 0.19345 ( 0.15812, 0.22881) ** 1 E 0.13440 ( 0.10408, 0.16466) ** 2 F 1.25935 ( 1.08009, 1.43860) ** 3 C 0.22047 ( 0.18247, 0.25842) ** 4 B 0.22179 ( 0.18441, 0.25924) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 69: Empirical Base Frequencies: A 0.25293 C 0.25897 G 0.26398 T(U) 0.22412 Transition/transversion ratio = 1.000000 +-----C | +---2 +---E | | +---1 | +--3 +----D | | | +----------------------------------F | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6038.21753 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14553 ( 0.11472, 0.17628) ** 4 2 0.11209 ( 0.08060, 0.14355) ** 2 C 0.19540 ( 0.15923, 0.23154) ** 2 3 0.02786 ( zero, 0.05919) 3 1 0.12301 ( 0.08869, 0.15733) ** 1 E 0.14083 ( 0.11033, 0.17127) ** 1 D 0.16484 ( 0.13237, 0.19728) ** 3 F 1.15025 ( 0.99489, 1.30561) ** 4 B 0.19953 ( 0.16383, 0.23523) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 70: Empirical Base Frequencies: A 0.25500 C 0.24724 G 0.24603 T(U) 0.25173 Transition/transversion ratio = 1.000000 +----D +---1 +--3 +---E | | +---4 +----------------------------------F | | | +-----C | 2-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -5972.74142 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.14239 ( 0.11235, 0.17254) ** 2 4 0.10897 ( 0.07790, 0.14002) ** 4 3 0.04618 ( 0.01363, 0.07884) ** 3 1 0.11749 ( 0.08289, 0.15210) ** 1 D 0.16008 ( 0.12873, 0.19153) ** 1 E 0.11714 ( 0.08958, 0.14465) ** 3 F 1.13916 ( 0.98284, 1.29543) ** 4 C 0.19370 ( 0.15777, 0.22959) ** 2 B 0.18168 ( 0.14799, 0.21537) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 71: Empirical Base Frequencies: A 0.26449 C 0.27588 G 0.23982 T(U) 0.21981 Transition/transversion ratio = 1.000000 +-----B | | +--------------------------------------F | +--3 | | | +----E 1--2 +--4 | | +----D | | | +-----C | +----A remember: this is an unrooted tree! Ln Likelihood = -6033.50357 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.16013 ( 0.12865, 0.19155) ** 1 B 0.17846 ( 0.14527, 0.21168) ** 1 2 0.06438 ( 0.03884, 0.09004) ** 2 3 0.05475 ( 0.02131, 0.08702) ** 3 F 1.28427 ( 1.09783, 1.47073) ** 3 4 0.10047 ( 0.06606, 0.13490) ** 4 E 0.16995 ( 0.13636, 0.20352) ** 4 D 0.17179 ( 0.13805, 0.20547) ** 2 C 0.19889 ( 0.16305, 0.23483) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 72: Empirical Base Frequencies: A 0.26553 C 0.25121 G 0.23982 T(U) 0.24344 Transition/transversion ratio = 1.000000 +----D +---2 +--1 +----E | | +--4 +---------------------------------------F | | | +------C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -5993.89178 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15065 ( 0.11970, 0.18157) ** 3 4 0.06302 ( 0.03719, 0.08889) ** 4 1 0.02447 ( zero, 0.05714) 1 2 0.13721 ( 0.10213, 0.17229) ** 2 D 0.15071 ( 0.11987, 0.18150) ** 2 E 0.13676 ( 0.10736, 0.16624) ** 1 F 1.31653 ( 1.12804, 1.50501) ** 4 C 0.22507 ( 0.18655, 0.26362) ** 3 B 0.19105 ( 0.15653, 0.22566) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 73: Empirical Base Frequencies: A 0.24396 C 0.26104 G 0.26121 T(U) 0.23378 Transition/transversion ratio = 1.000000 +----E +---4 +--2 +-----D | | +--1 +---------------------------------F | | | +------C | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6062.93215 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.15570 ( 0.12428, 0.18715) ** 3 1 0.05865 ( 0.03360, 0.08373) ** 1 2 0.03922 ( 0.00599, 0.07224) ** 2 4 0.11738 ( 0.08291, 0.15184) ** 4 E 0.14917 ( 0.11769, 0.18079) ** 4 D 0.17811 ( 0.14410, 0.21200) ** 2 F 1.13794 ( 0.98471, 1.29118) ** 1 C 0.23159 ( 0.19256, 0.27071) ** 3 B 0.19863 ( 0.16327, 0.23398) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 74: Empirical Base Frequencies: A 0.25621 C 0.24776 G 0.25742 T(U) 0.23861 Transition/transversion ratio = 1.000000 +-----D +-----4 +--3 +----E | | +--1 +-----C | | | +------B | 2--------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -6127.99044 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.13105 ( 0.09965, 0.16327) ** 2 1 0.02539 ( zero, 0.05464) 1 3 0.08166 ( 0.05148, 0.11169) ** 3 4 0.17812 ( 0.14031, 0.21584) ** 4 D 0.17808 ( 0.14338, 0.21269) ** 4 E 0.14870 ( 0.11651, 0.18090) ** 3 C 0.19795 ( 0.16088, 0.23503) ** 1 B 0.21880 ( 0.18095, 0.25667) ** 2 F 1.30815 ( 1.11969, 1.49661) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 75: Empirical Base Frequencies: A 0.25380 C 0.25086 G 0.26794 T(U) 0.22740 Transition/transversion ratio = 1.000000 +----B | | +----------------------------------F | | 3--4 +-----D | | +-----2 | +--1 +---E | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6127.66935 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.16599 ( 0.13327, 0.19874) ** 3 B 0.15093 ( 0.11948, 0.18240) ** 3 4 0.07673 ( 0.04341, 0.10976) ** 4 F 1.16945 ( 1.00763, 1.33131) ** 4 1 0.04645 ( 0.01337, 0.07953) ** 1 2 0.18175 ( 0.14240, 0.22118) ** 2 D 0.19035 ( 0.15463, 0.22598) ** 2 E 0.13074 ( 0.10025, 0.16124) ** 1 C 0.22942 ( 0.18841, 0.27037) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 76: Empirical Base Frequencies: A 0.26518 C 0.25776 G 0.24776 T(U) 0.22930 Transition/transversion ratio = 1.000000 +----------------------------------F +--2 | | +----E +--1 +----3 | | +----D | | | +------C | 4-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6113.04282 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15799 ( 0.12554, 0.19033) ** 4 1 0.10136 ( 0.07038, 0.13233) ** 1 2 0.02360 ( zero, 0.05653) 2 F 1.15198 ( 0.99395, 1.30996) ** 2 3 0.13725 ( 0.10118, 0.17332) ** 3 E 0.16988 ( 0.13651, 0.20327) ** 3 D 0.15079 ( 0.11897, 0.18256) ** 1 C 0.20870 ( 0.17086, 0.24651) ** 4 B 0.20716 ( 0.17040, 0.24405) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 77: Empirical Base Frequencies: A 0.24241 C 0.25828 G 0.26156 T(U) 0.23775 Transition/transversion ratio = 1.000000 +----B | | +---------------------------------------F | +--3 | | | +----D 2--1 +--4 | | +-----E | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6010.30228 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.14801 ( 0.11797, 0.17807) ** 2 B 0.16911 ( 0.13704, 0.20113) ** 2 1 0.06691 ( 0.04075, 0.09324) ** 1 3 0.06983 ( 0.03821, 0.10066) ** 3 F 1.30656 ( 1.11597, 1.49685) ** 3 4 0.05884 ( 0.02826, 0.08941) ** 4 D 0.14675 ( 0.11563, 0.17785) ** 4 E 0.19486 ( 0.15944, 0.23039) ** 1 C 0.22304 ( 0.18485, 0.26131) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 78: Empirical Base Frequencies: A 0.25345 C 0.27899 G 0.24638 T(U) 0.22119 Transition/transversion ratio = 1.000000 +---E +---1 +--3 +-----D | | +--4 +-----------------------------------F | | | +-------C | 2------B | +----A remember: this is an unrooted tree! Ln Likelihood = -6169.74300 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.16029 ( 0.12747, 0.19324) ** 2 4 0.08417 ( 0.05466, 0.11367) ** 4 3 0.02896 ( zero, 0.06295) 3 1 0.13267 ( 0.09662, 0.16875) ** 1 E 0.13360 ( 0.10314, 0.16403) ** 1 D 0.19342 ( 0.15773, 0.22912) ** 3 F 1.19117 ( 1.02302, 1.35933) ** 4 C 0.24492 ( 0.20332, 0.28652) ** 2 B 0.21183 ( 0.17428, 0.24936) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 79: Empirical Base Frequencies: A 0.24879 C 0.25138 G 0.25863 T(U) 0.24120 Transition/transversion ratio = 1.000000 +----C +--1 | +--------------------------------F +---2 | | +----E | +---3 | +----D | 4------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6068.78998 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13933 ( 0.10863, 0.17015) ** 4 2 0.10857 ( 0.07686, 0.14020) ** 2 1 0.03876 ( 0.00520, 0.07243) ** 1 C 0.17694 ( 0.13925, 0.21463) ** 1 F 1.09082 ( 0.94377, 1.23788) ** 2 3 0.14743 ( 0.11301, 0.18185) ** 3 E 0.13940 ( 0.10925, 0.16957) ** 3 D 0.16512 ( 0.13251, 0.19768) ** 4 B 0.22022 ( 0.18230, 0.25800) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 80: Empirical Base Frequencies: A 0.26881 C 0.25690 G 0.23361 T(U) 0.24068 Transition/transversion ratio = 1.000000 +----B | | +---------------------------------------F | +--3 | | | +----E 2--4 +--1 | | +----D | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6076.81122 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.15245 ( 0.12134, 0.18344) ** 2 B 0.15550 ( 0.12404, 0.18702) ** 2 4 0.07899 ( 0.05190, 0.10618) ** 4 3 0.10016 ( 0.06464, 0.13488) ** 3 F 1.33786 ( 1.13882, 1.53660) ** 3 1 0.05492 ( 0.02103, 0.08881) ** 1 E 0.17254 ( 0.13878, 0.20641) ** 1 D 0.17159 ( 0.13788, 0.20525) ** 4 C 0.23000 ( 0.19031, 0.26972) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 81: Empirical Base Frequencies: A 0.25259 C 0.25397 G 0.25414 T(U) 0.23930 Transition/transversion ratio = 1.000000 +----B | | +----E | +----1 | | +----D 3--2 | | +------C | +--4 | +--------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6143.97391 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.16519 ( 0.13217, 0.19810) ** 3 B 0.17339 ( 0.13978, 0.20705) ** 3 2 0.09790 ( 0.06683, 0.12890) ** 2 1 0.17109 ( 0.13291, 0.20917) ** 1 E 0.16231 ( 0.12980, 0.19494) ** 1 D 0.15043 ( 0.11888, 0.18197) ** 2 4 0.04150 ( 0.00372, 0.07929) * 4 C 0.22204 ( 0.17925, 0.26471) ** 4 F 1.07564 ( 0.92952, 1.22176) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 82: Empirical Base Frequencies: A 0.24017 C 0.26380 G 0.26984 T(U) 0.22619 Transition/transversion ratio = 1.000000 +---------------------------------------F +--1 | | +---D +--3 +---4 | | +----E | | | +------C | 2-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6100.82779 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.15382 ( 0.12217, 0.18554) ** 2 3 0.07996 ( 0.05051, 0.10955) ** 3 1 0.07667 ( 0.03740, 0.11401) ** 1 F 1.32335 ( 1.12414, 1.52219) ** 1 4 0.12408 ( 0.08503, 0.16315) ** 4 D 0.14397 ( 0.11285, 0.17508) ** 4 E 0.15097 ( 0.11927, 0.18277) ** 3 C 0.22022 ( 0.18115, 0.25935) ** 2 B 0.19728 ( 0.16163, 0.23280) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 83: Empirical Base Frequencies: A 0.25104 C 0.25673 G 0.26001 T(U) 0.23223 Transition/transversion ratio = 1.000000 +-----B | | +-----C | +--2 | | +------------------------------------F 4--1 | | +----D | +-----3 | +----E | +----A remember: this is an unrooted tree! Ln Likelihood = -6091.23341 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.14332 ( 0.11293, 0.17367) ** 4 B 0.17847 ( 0.14490, 0.21206) ** 4 1 0.10270 ( 0.07128, 0.13400) ** 1 2 0.00767 ( zero, 0.04140) 2 C 0.21153 ( 0.17250, 0.25056) ** 2 F 1.21561 ( 1.04521, 1.38591) ** 1 3 0.18045 ( 0.14236, 0.21844) ** 3 D 0.16655 ( 0.13298, 0.20009) ** 3 E 0.14517 ( 0.11349, 0.17691) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 84: Empirical Base Frequencies: A 0.25276 C 0.24914 G 0.24827 T(U) 0.24983 Transition/transversion ratio = 1.000000 +---------------------------------F +--2 | | +-----D +---4 +---1 | | +---E | | | +-----C | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6017.94576 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.12840 ( 0.09916, 0.15770) ** 3 4 0.11603 ( 0.08481, 0.14713) ** 4 2 0.02066 ( zero, 0.05074) 2 F 1.12626 ( 0.97437, 1.27810) ** 2 1 0.11512 ( 0.08209, 0.14803) ** 1 D 0.18503 ( 0.15100, 0.21916) ** 1 E 0.12615 ( 0.09726, 0.15496) ** 4 C 0.20300 ( 0.16602, 0.23994) ** 3 B 0.20008 ( 0.16423, 0.23580) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 85: Empirical Base Frequencies: A 0.26052 C 0.22792 G 0.28037 T(U) 0.23119 Transition/transversion ratio = 1.000000 +----B | | +-----D | +-----1 | +--4 +---E | | | 3--2 +------C | | | +------------------------------------F | +----A remember: this is an unrooted tree! Ln Likelihood = -6072.43499 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.14836 ( 0.11772, 0.17910) ** 3 B 0.17213 ( 0.13918, 0.20512) ** 3 2 0.07265 ( 0.04422, 0.10094) ** 2 4 0.01331 ( zero, 0.04100) 4 1 0.18147 ( 0.14290, 0.22005) ** 1 D 0.20077 ( 0.16434, 0.23710) ** 1 E 0.13518 ( 0.10441, 0.16595) ** 4 C 0.20989 ( 0.17209, 0.24760) ** 2 F 1.21998 ( 1.04967, 1.39017) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 86: Empirical Base Frequencies: A 0.26898 C 0.24431 G 0.26070 T(U) 0.22602 Transition/transversion ratio = 1.000000 +-----B | | +-----C 3--2 | | +--------------------------------------F | +--1 | | +----D | +--4 | +----E | +---A remember: this is an unrooted tree! Ln Likelihood = -5906.35462 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13141 ( 0.10229, 0.16047) ** 3 B 0.20153 ( 0.16633, 0.23681) ** 3 2 0.08184 ( 0.05481, 0.10892) ** 2 C 0.18143 ( 0.14727, 0.21563) ** 2 1 0.04810 ( 0.01675, 0.07868) ** 1 F 1.28613 ( 1.10319, 1.46907) ** 1 4 0.09418 ( 0.06240, 0.12596) ** 4 D 0.14605 ( 0.11608, 0.17591) ** 4 E 0.13705 ( 0.10795, 0.16619) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 87: Empirical Base Frequencies: A 0.24896 C 0.24827 G 0.26725 T(U) 0.23551 Transition/transversion ratio = 1.000000 +-----B | | +-----------------------------------F | +--3 | | | +----D 4--2 +---1 | | +----E | | | +------C | +----A remember: this is an unrooted tree! Ln Likelihood = -6018.88265 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.15469 ( 0.12350, 0.18595) ** 4 B 0.18058 ( 0.14692, 0.21420) ** 4 2 0.08544 ( 0.05723, 0.11356) ** 2 3 0.02285 ( zero, 0.05326) 3 F 1.17288 ( 1.01398, 1.33178) ** 3 1 0.11040 ( 0.07764, 0.14316) ** 1 D 0.15434 ( 0.12271, 0.18601) ** 1 E 0.17275 ( 0.13940, 0.20609) ** 2 C 0.21570 ( 0.17810, 0.25323) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 88: Empirical Base Frequencies: A 0.27260 C 0.24914 G 0.23913 T(U) 0.23913 Transition/transversion ratio = 1.000000 +-----B | | +---D | +----4 | | +---E 1--3 | | +-------------------------------F | +--2 | +----C | +----A remember: this is an unrooted tree! Ln Likelihood = -5888.41622 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.14452 ( 0.11460, 0.17446) ** 1 B 0.18683 ( 0.15287, 0.22069) ** 1 3 0.07492 ( 0.04780, 0.10209) ** 3 4 0.16177 ( 0.12725, 0.19634) ** 4 D 0.12879 ( 0.10063, 0.15694) ** 4 E 0.12776 ( 0.09970, 0.15582) ** 3 2 0.03886 ( 0.00614, 0.07146) ** 2 F 1.06509 ( 0.92409, 1.20616) ** 2 C 0.17769 ( 0.14077, 0.21461) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 89: Empirical Base Frequencies: A 0.24310 C 0.24241 G 0.27174 T(U) 0.24275 Transition/transversion ratio = 1.000000 +------B | | +---------------------------------------F | +---2 | | +--C 3--1 | | +----D | +---4 | +----E | +----A remember: this is an unrooted tree! Ln Likelihood = -6110.47774 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.16189 ( 0.12881, 0.19490) ** 3 B 0.21129 ( 0.17387, 0.24879) ** 3 1 0.10609 ( 0.07486, 0.13729) ** 1 2 0.11058 ( 0.07390, 0.14737) ** 2 F 1.31812 ( 1.12072, 1.51552) ** 2 C 0.10379 ( 0.06706, 0.14052) ** 1 4 0.13093 ( 0.09825, 0.16360) ** 4 D 0.15337 ( 0.12204, 0.18473) ** 4 E 0.15383 ( 0.12240, 0.18523) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 90: Empirical Base Frequencies: A 0.27053 C 0.25414 G 0.24914 T(U) 0.22619 Transition/transversion ratio = 1.000000 +----------------------------------------F +--3 | | +----D +--1 +--4 | | +----E | | | +-----C | 2-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6097.98704 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.15677 ( 0.12483, 0.18882) ** 2 1 0.09845 ( 0.06822, 0.12863) ** 1 3 0.07009 ( 0.03686, 0.10426) ** 3 F 1.34245 ( 1.14415, 1.54100) ** 3 4 0.07759 ( 0.04343, 0.11177) ** 4 D 0.17518 ( 0.14140, 0.20905) ** 4 E 0.16061 ( 0.12806, 0.19314) ** 1 C 0.19402 ( 0.15766, 0.23039) ** 2 B 0.19103 ( 0.15588, 0.22612) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 91: Empirical Base Frequencies: A 0.26001 C 0.23499 G 0.27157 T(U) 0.23344 Transition/transversion ratio = 1.000000 +------C | +--2 +---E | | +--1 | +--4 +----D | | | +------------------------------------F | 3------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6021.09320 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.12468 ( 0.09588, 0.15337) ** 3 2 0.09117 ( 0.06172, 0.12046) ** 2 C 0.22112 ( 0.18233, 0.25982) ** 2 4 0.05598 ( 0.02357, 0.08933) ** 4 1 0.10055 ( 0.06612, 0.13498) ** 1 E 0.12233 ( 0.09391, 0.15070) ** 1 D 0.17461 ( 0.14147, 0.20778) ** 4 F 1.24189 ( 1.06686, 1.41684) ** 3 B 0.21009 ( 0.17372, 0.24647) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 92: Empirical Base Frequencies: A 0.23723 C 0.26346 G 0.27916 T(U) 0.22015 Transition/transversion ratio = 1.000000 +------C +--2 | | +----D +--1 +----3 | | +-----E | | | +----------------------------------F | 4------B | +---A remember: this is an unrooted tree! Ln Likelihood = -6026.11918 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.13251 ( 0.10374, 0.16140) ** 4 1 0.05728 ( 0.03184, 0.08272) ** 1 2 0.00623 ( zero, 0.03004) 2 C 0.21889 ( 0.18113, 0.25674) ** 2 3 0.15341 ( 0.11920, 0.18763) ** 3 D 0.14143 ( 0.11091, 0.17187) ** 3 E 0.18051 ( 0.14642, 0.21455) ** 1 F 1.16415 ( 1.00854, 1.31967) ** 4 B 0.21044 ( 0.17439, 0.24650) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 93: Empirical Base Frequencies: A 0.25949 C 0.24655 G 0.24707 T(U) 0.24689 Transition/transversion ratio = 1.000000 +----E +-----3 | +-----D +--1 | | +----C | +--4 | +-------------------------------------F | 2-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6116.26546 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.16131 ( 0.12917, 0.19333) ** 2 1 0.08825 ( 0.05936, 0.11720) ** 1 3 0.17422 ( 0.13642, 0.21211) ** 3 E 0.14749 ( 0.11606, 0.17895) ** 3 D 0.19036 ( 0.15509, 0.22556) ** 1 4 0.04481 ( 0.01179, 0.07784) ** 4 C 0.14796 ( 0.11263, 0.18342) ** 4 F 1.25765 ( 1.07768, 1.43771) ** 2 B 0.18591 ( 0.15153, 0.22028) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 94: Empirical Base Frequencies: A 0.25397 C 0.24638 G 0.25380 T(U) 0.24586 Transition/transversion ratio = 1.000000 +------C +--4 | | +---------------------------------------F | +--2 | | +-----D | +---3 | +---E | 1----B | +-----A remember: this is an unrooted tree! Ln Likelihood = -6120.41787 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.18188 ( 0.14778, 0.21587) ** 1 4 0.07009 ( 0.04359, 0.09665) ** 4 C 0.21323 ( 0.17547, 0.25101) ** 4 2 0.04674 ( 0.01290, 0.08046) ** 2 F 1.30926 ( 1.11761, 1.50089) ** 2 3 0.10854 ( 0.07354, 0.14354) ** 3 D 0.20148 ( 0.16511, 0.23774) ** 3 E 0.14882 ( 0.11712, 0.18059) ** 1 B 0.16958 ( 0.13654, 0.20264) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 95: Empirical Base Frequencies: A 0.24034 C 0.25311 G 0.26553 T(U) 0.24103 Transition/transversion ratio = 1.000000 +-----B | | +------C 1--4 | | +------------------------------------F | +--2 | | +---D | +---3 | +----E | +----A remember: this is an unrooted tree! Ln Likelihood = -6010.77512 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.16658 ( 0.13408, 0.19896) ** 1 B 0.18256 ( 0.14855, 0.21659) ** 1 4 0.07340 ( 0.04738, 0.09954) ** 4 C 0.21207 ( 0.17477, 0.24943) ** 4 2 0.02834 ( zero, 0.05982) 2 F 1.20749 ( 1.04171, 1.37325) ** 2 3 0.11809 ( 0.08459, 0.15158) ** 3 D 0.13242 ( 0.10337, 0.16135) ** 3 E 0.17054 ( 0.13806, 0.20310) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 96: Empirical Base Frequencies: A 0.23309 C 0.24793 G 0.27243 T(U) 0.24655 Transition/transversion ratio = 1.000000 +------C | +--1 +----D | | +---4 | +--2 +----E | | | +---------------------------------F | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -6001.09124 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13774 ( 0.10868, 0.16679) ** 3 1 0.04363 ( 0.02039, 0.06677) ** 1 C 0.21796 ( 0.18059, 0.25533) ** 1 2 0.09011 ( 0.05314, 0.12742) ** 2 4 0.11295 ( 0.07557, 0.15033) ** 4 D 0.15478 ( 0.12301, 0.18662) ** 4 E 0.14735 ( 0.11618, 0.17841) ** 2 F 1.11170 ( 0.95851, 1.26475) ** 3 B 0.19442 ( 0.16015, 0.22869) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 97: Empirical Base Frequencies: A 0.26225 C 0.24862 G 0.25914 T(U) 0.22999 Transition/transversion ratio = 1.000000 +------C +--1 | | +-----------------------------------F | +--4 | | +----D | +--2 | +----E | 3-----B | +---A remember: this is an unrooted tree! Ln Likelihood = -5948.98575 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13182 ( 0.10312, 0.16052) ** 3 1 0.07758 ( 0.04998, 0.10524) ** 1 C 0.24040 ( 0.20056, 0.28024) ** 1 4 0.04551 ( 0.01421, 0.07669) ** 4 F 1.18561 ( 1.02250, 1.34881) ** 4 2 0.09922 ( 0.06673, 0.13171) ** 2 D 0.14120 ( 0.11159, 0.17079) ** 2 E 0.13967 ( 0.11010, 0.16918) ** 3 B 0.19509 ( 0.16038, 0.22974) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 98: Empirical Base Frequencies: A 0.25138 C 0.24448 G 0.26536 T(U) 0.23879 Transition/transversion ratio = 1.000000 +-----D +----1 +--4 +----E | | +--2 +-----C | | | +-----------------------------------F | 3-----B | +----A remember: this is an unrooted tree! Ln Likelihood = -6150.04751 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.16016 ( 0.12782, 0.19253) ** 3 2 0.03425 ( 0.00681, 0.06142) ** 2 4 0.05701 ( 0.02840, 0.08561) ** 4 1 0.15355 ( 0.11770, 0.18933) ** 1 D 0.18815 ( 0.15290, 0.22346) ** 1 E 0.16883 ( 0.13525, 0.20239) ** 4 C 0.19776 ( 0.16140, 0.23410) ** 2 F 1.18184 ( 1.02009, 1.34371) ** 3 B 0.20359 ( 0.16737, 0.23993) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 99: Empirical Base Frequencies: A 0.25518 C 0.24086 G 0.25742 T(U) 0.24655 Transition/transversion ratio = 1.000000 +-----B | | +------C | | 3--2 +----D | | +--4 | +--1 +----E | | | +------------------------------------F | +---A remember: this is an unrooted tree! Ln Likelihood = -6022.16672 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.11167 ( 0.08500, 0.13829) ** 3 B 0.20749 ( 0.17185, 0.24316) ** 3 2 0.07636 ( 0.04949, 0.10318) ** 2 C 0.22411 ( 0.18568, 0.26250) ** 2 1 0.05737 ( 0.02358, 0.09155) ** 1 4 0.10476 ( 0.06977, 0.13976) ** 4 D 0.15436 ( 0.12304, 0.18574) ** 4 E 0.15910 ( 0.12733, 0.19080) ** 1 F 1.23848 ( 1.06048, 1.41644) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 100: Empirical Base Frequencies: A 0.25121 C 0.27001 G 0.24362 T(U) 0.23516 Transition/transversion ratio = 1.000000 +-----B | | +-------------------------------------F | +--2 | | | +----D 3---1 +---4 | | +----E | | | +------C | +---A remember: this is an unrooted tree! Ln Likelihood = -6099.72420 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.13414 ( 0.10434, 0.16400) ** 3 B 0.20136 ( 0.16551, 0.23733) ** 3 1 0.11184 ( 0.08014, 0.14345) ** 1 2 0.02728 ( zero, 0.06153) 2 F 1.24760 ( 1.06954, 1.42557) ** 2 4 0.13195 ( 0.09576, 0.16813) ** 4 D 0.15576 ( 0.12361, 0.18791) ** 4 E 0.16357 ( 0.13073, 0.19627) ** 1 C 0.22059 ( 0.18151, 0.25958) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01