CLUSTAL W multiple sequence alignment TRXB_ECOLI atgggcacgaccaaacacagtaaactgcttatcctgggttcaggcccggcgggatacacc TRXB_VIBCH atgagtaacgtgaaacacagcaaacttcttatccttggctccggccctgcgggttacaca TRXB_ECOLI gctgctgtctacgcggcgcgcgccaacctgcaacctgtgctgattaccggcatggaaaaa TRXB_VIBCH gccgcggtttacgctgcgcgcgccaacctaaaacccgtgctggtcactggtatgcagcaa TRXB_ECOLI ggcggccaactgaccaccaccacggaagtggaaaactggcctggcgatccaaacgatctg TRXB_VIBCH ggtggtcagctcaccacgacgacagaagtcgagaactggccaggcgatgccgaaggctta TRXB_ECOLI accggtccgttattaatggagcgcatgcacgaacatgccaccaagtttgaaactgagatc TRXB_VIBCH actggcccagcactgatggagcgcatgaaagagcacgctgagcgtttcgatactgaaatt TRXB_ECOLI atttttgatcatatcaacaaggtggatctgcaaaaccgtccgttccgtctgaatggcgat TRXB_VIBCH gtttttgatcacattaactcagttgatctctcttctcgcccatttcgtttgacaggcgac TRXB_ECOLI aacggcgaatacacttgcgacgcgctgattattgccaccggagcttctgcacgctatctc TRXB_VIBCH agccaagagtacacctgtgatgccctcatcatctctactggtgcctctgctaaatacctc TRXB_ECOLI ggcctgccctctgaagaagcctttaaaggccgtggggtttctgcttgtgcaacctgcgac TRXB_VIBCH ggtttagaatcagaagaagcgttcaaaggtcgcggtgtatccgcttgtgcgacctgtgat TRXB_ECOLI ggtttcttctatcgcaaccagaaagttgcggtcatcggcggcggcaataccgcggttgaa TRXB_VIBCH ggtttcttctatcgcaaccagaaagtggcagtagtcggtggtggtaatactgcggttgaa TRXB_ECOLI gaggcgttgtatctgtctaacatcgcttcggaagtgcatctgattcaccgccgtgacggt TRXB_VIBCH gaggctctttacctatcgaatatcgcctcagaagtgcatctggtccaccgccgtgacagc TRXB_ECOLI ttccgcgcggaaaaaatcctcattaagcgcctgatggataaagtggagaacggcaacatc TRXB_VIBCH ttccgcagtgaaaaaattctgatcgatcgtctgatggataaagtggcgaatggcaatatc TRXB_ECOLI attctgcacaccaaccgtacgctggaagaagtgaccggcgatcaaatgggtgtcactggc TRXB_VIBCH gttctgcacacgcaccgcactttggatgaagtactgggcgatgagatgggcgtgacaggc TRXB_ECOLI gttcgtctgcgcgatacgcaaagcgataacatcgagtcactcgacgttgccggtctgttt TRXB_VIBCH gtgcgtttgaaagatacccagtcagatatgacggaaaacttggatgtgatgggggtattc TRXB_ECOLI gttgctatcggtcacagcccgaatactgcgattttcgaagggcagctggaactggaaaac TRXB_VIBCH attgccattggtcatcagccaaactcgcaaattttcgaaggtcagcttgaaatgaaaaac TRXB_ECOLI ggctacatcaaagtacagtcgggtattcatggtaatgccacccagaccagcattcctggc TRXB_VIBCH ggctacatagtcgtcaaatctggccttgaaggtaatgcaacccagaccagcattgagggt TRXB_ECOLI gtctttgccgcaggcgacgtgatggatcacatttatcgccaggccattacttcggccggt TRXB_VIBCH gtgtttgccgcgggtgatgtgatggatcataactaccgtcaagcgattacctctgccgga TRXB_ECOLI acaggctgcatggcagcacttgatgcggaacgctacctcgatggtttagctgac TRXB_VIBCH accgggtgtatggcagcactcgatgctgaacgttacctagatagccagggtaaa
| Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package: | |
| KS = 50.1378 | |
| KA = 0.1299 | |
| KA/KS = 0.0026 | |
| You can see the parameters used in codeml to calculate these values. | |
| If you use these values, please cite the following peper: | |
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