RID: 6CNYP56T016 Job Title:Helicase P19811 Helicase from Replicase Program: BLASTP Query: Helicase P19811 Helicase from Replicase polyprotein 1ab of Equine arteritis virus (strain Bucyrus) (EAV) ID: lcl|Query_83249(amino acid) Length: 467 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Equine arter... NA 299386 907 907 100% 0.0 100.00 3175 P19811.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300016 166 166 85% 8e-43 35.98 3616 Q83017.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV VR2332 NA 300559 164 164 85% 3e-42 35.48 3960 Q9WJB2.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV 16244B NA 300561 161 161 85% 2e-41 35.24 3961 Q9YN02.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lelystad virus NA 11049 158 158 87% 3e-40 34.88 3855 Q04561.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV SD 01-08 NA 857306 156 156 87% 1e-39 34.88 3838 A0MD28.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300015 155 155 86% 4e-39 33.25 3637 Q06502.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV HB-1(s... NA 300563 150 150 85% 1e-37 34.00 3961 Q8B912.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Simian hemor... NA 38143 130 130 84% 6e-31 32.28 3595 Q68772.4 Alignments: >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1 papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Equine arteritis virus Bucyrus] Sequence ID: P19811.3 Length: 3175 Range 1: 2371 to 2837 Score:907 bits(2343), Expect:0.0, Method:Compositional matrix adjust., Identities:467/467(100%), Positives:467/467(100%), Gaps:0/467(0%) Query 1 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 60 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP Sbjct 2371 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 2430 Query 61 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNI 120 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYKVGHKVVAVVADVGGNI Sbjct 2431 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYKVGHKVVAVVADVGGNI 2490 Query 121 VFGCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSAT 180 VFGCGPGSHIAVPLQDTLKGVVVNKALKNAAASEYVEGPPGSGKTFHLVKDVLAVVGSAT Sbjct 2491 VFGCGPGSHIAVPLQDTLKGVVVNKALKNAAASEYVEGPPGSGKTFHLVKDVLAVVGSAT 2550 Query 181 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGETFVD 240 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGETFVD Sbjct 2551 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGETFVD 2610 Query 241 EVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAA 300 EVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAA Sbjct 2611 EVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAA 2670 Query 301 VCDLIKGIYPYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVV 360 VCDLIKGIYPYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVV Sbjct 2671 VCDLIKGIYPYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVV 2730 Query 361 TLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLIHGPPTACHL 420 TLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLIHGPPTACHL Sbjct 2731 TLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLIHGPPTACHL 2790 Query 421 GQEIDLWSNEGLEYYKEVNLLYTHVPIKDGVIHSYPNCGPACGWEKQ 467 GQEIDLWSNEGLEYYKEVNLLYTHVPIKDGVIHSYPNCGPACGWEKQ Sbjct 2791 GQEIDLWSNEGLEYYKEVNLLYTHVPIKDGVIHSYPNCGPACGWEKQ 2837 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus Plagemann] Sequence ID: Q83017.2 Length: 3616 Range 1: 2850 to 3225 Score:166 bits(419), Expect:8e-43, Method:Compositional matrix adjust., Identities:145/403(36%), Positives:199/403(49%), Gaps:33/403(8%) Query 4 CTVCGAAPVAKSACGGWFCGNCVPYHA-GHCHTTSLFANCGHDIMYRSTYCTMCEGSPKQ 62 C CGA S+CG C YH GH H + CGH + S C C S Sbjct 2850 CAHCGAPATLVSSCGLNLCD----YHGHGHPHCPVVLP-CGHAV--GSGVCEQCSSSAMN 2902 Query 63 MVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNIVF 122 + + LD LL + Y + L V D ++ PPG Y+ VV+V D+ GN+V Sbjct 2903 LNTE-----LDILLMCVPYHPPKVELLSVNDKVSSLPPGAYQARGGVVSVRRDILGNVV- 2956 Query 123 GCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSATLV 182 G + + + T + + N S++V G PG+GKT +L+ V + Sbjct 2957 DLPDGDYQVMKVAQTCADISMVSVNSNILRSQFVTGAPGTGKTTYLLS---VVRDDDVIY 3013 Query 183 VPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFVDE 241 PTH +MLD + LK DP PK T L+FP PG TVRL G G +++DE Sbjct 3014 TPTHRTMLDVVKALKVCRFDP----PKDTPLEFPVPGRTGPTVRLIGAGFVPGRVSYLDE 3069 Query 242 VAYFSPVDLARILTQGRVKGYGDLNQL---GCVGPASVPRNLWLRHFVSLEPLRVCHRFG 298 AY +P+D+ ++L++ + GDLNQL G GP + R + + RFG Sbjct 3070 AAYCNPLDVLKVLSKTPLVCVGDLNQLPPVGFNGPCFAFSLMPGRQLIEV------FRFG 3123 Query 299 AAVCDLIKGIYPY-YEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTF 357 AV + IK Y P T V F+ G V+T YH+DR G TIDS QGCT+ Sbjct 3124 PAVVNSIKKFYKEELVPRGPDTGVKFLKQYQ-PYGQVLTPYHRDRVDGAITIDSSQGCTY 3182 Query 358 PVVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLK 400 VVT+ LPTP+SL RA+VA+TRA ++IYDP+DQL L+ Sbjct 3183 DVVTVYLPTPKSLNSARALVALTRARHYVFIYDPYDQLQQYLQ 3225 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV VR2332] Sequence ID: Q9WJB2.2 Length: 3960 Range 1: 3147 to 3526 Score:164 bits(414), Expect:3e-42, Method:Compositional matrix adjust., Identities:143/403(35%), Positives:194/403(48%), Gaps:25/403(6%) Query 1 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 60 S VC CGA +ACG C +H HC T CGH S C+ C Sbjct 3147 SRVCGYCGAPAPYATACGLDVCIYHTHFHQ-HCPVTIW---CGHPA--GSGSCSEC---- 3196 Query 61 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNI 120 K V K P LD +L + Y + + V G T PGRY+ +V+V + GN Sbjct 3197 KSPVGKGTSP-LDEVLEQVPYKPPRTVIMHVEQGLTPLDPGRYQTRRGLVSVRRGIRGNE 3255 Query 121 VFGCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSAT 180 V G G + + L T K + + N S ++ GPPG+GKT+ L++ V Sbjct 3256 V-GLPDGDYASTALLPTCKEINMVAVASNVLRSRFIIGPPGAGKTYWLLQQVQ---DGDV 3311 Query 181 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFV 239 + PTH +MLD I L F VP T L FP P VR+ G G+ +F+ Sbjct 3312 IYTPTHQTMLDMIRALGTC----RFNVPAGTTLQFPVPSRTGPWVRILAGGWCPGKNSFL 3367 Query 240 DEVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGA 299 DE AY + +D+ R+L++ + GD QL VG S + ++ + L+ RFG Sbjct 3368 DEAAYCNHLDVLRLLSKTTLTCLGDFKQLHPVGFDS---HCYVFDIMPQTQLKTIWRFGQ 3424 Query 300 AVCDLIKGIY-PYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFP 358 +CD I+ Y +TT+V +V P G V+T YH+DR TIDS QG TF Sbjct 3425 NICDAIQPDYRDKLMSMVNTTRVTYVEKP-VRYGQVLTPYHRDREDDAITIDSSQGATFD 3483 Query 359 VVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKF 401 VVTL LPT SL R RA+VA+TRA +++YDP QL GL Sbjct 3484 VVTLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQLQGLFDL 3526 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV 16244B] Sequence ID: Q9YN02.3 Length: 3961 Range 1: 3148 to 3527 Score:161 bits(408), Expect:2e-41, Method:Compositional matrix adjust., Identities:142/403(35%), Positives:193/403(47%), Gaps:25/403(6%) Query 1 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 60 S VC CGA +ACG C +H HC T CGH S C+ C Sbjct 3148 SRVCGYCGAPAPYATACGLDVCIYHTHFHQ-HCPVTIW---CGHPA--GSGSCSEC---- 3197 Query 61 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNI 120 K V K P LD +L + Y + + V G T PGRY+ +V+V + GN Sbjct 3198 KSPVGKGTSP-LDEVLEQVPYKPPRTVIMHVEQGLTPLDPGRYQTRRGLVSVRRGIRGNE 3256 Query 121 VFGCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSAT 180 V G + + L T K + + N S ++ GPPG+GKT+ L++ V Sbjct 3257 V-ELPDGDYASTALLPTCKEINMVAVASNVLRSRFIIGPPGAGKTYWLLQQVQ---DGDV 3312 Query 181 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFV 239 + PTH +MLD I L F VP T L FP P VR+ G G+ +F+ Sbjct 3313 IYTPTHQTMLDMIRALGTC----RFNVPAGTTLQFPVPSRTGPWVRILAGGWCPGKNSFL 3368 Query 240 DEVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGA 299 DE AY + +D+ R+L++ + GD QL VG S + ++ + L+ RFG Sbjct 3369 DEAAYCNHLDVLRLLSKTTLTCLGDFKQLHPVGFDS---HCYVFDIMPQTQLKTIWRFGQ 3425 Query 300 AVCDLIKGIY-PYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFP 358 +CD I+ Y +TT+V +V P G V+T YH+DR TIDS QG TF Sbjct 3426 NICDAIQPDYRDKLMSMVNTTRVTYVEKP-VRYGQVLTPYHRDREDDAITIDSSQGATFD 3484 Query 359 VVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKF 401 VVTL LPT SL R RA+VA+TRA +++YDP QL GL Sbjct 3485 VVTLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQLQGLFDL 3527 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lelystad virus] Sequence ID: Q04561.3 Length: 3855 Range 1: 3044 to 3430 Score:158 bits(399), Expect:3e-40, Method:Compositional matrix adjust., Identities:143/410(35%), Positives:198/410(48%), Gaps:25/410(6%) Query 4 CTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSPKQM 63 C +C A SACG C +H HC T +CGH S C+ C+ SP Sbjct 3044 CGICDAKADYASACGLDLCLFHSHFHQ-HCPVT---LSCGHHA--GSKECSQCQ-SP--- 3093 Query 64 VPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNIVFG 123 V P LD +L I Y + + V + T PGRY+ +VAV + GN V Sbjct 3094 VGAGRSP-LDAVLKQIPYKPPRTVIMKVGNKTTALDPGRYQSRRGLVAVKRGIAGNEV-D 3151 Query 124 CGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSATLVV 183 G + VPL T K + + K N S+++ GPPGSGKT L+ V + Sbjct 3152 LSDGDYQVVPLLPTCKDINMVKVACNVLLSKFIVGPPGSGKTTWLLSQVQ---DDDVIYT 3208 Query 184 PTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFVDEV 242 PTH +M D ++ LK + +P + L FP P VRL G G +++DE Sbjct 3209 PTHQTMFDIVSALKVC----RYSIPGASGLPFPPPARSGPWVRLIASGHVPGRVSYLDEA 3264 Query 243 AYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAAVC 302 Y + +D+ R+L++ + GDL QL VG S ++ + + L +RFG +C Sbjct 3265 GYCNHLDILRLLSKTPLVCLGDLQQLHPVGFDSY---CYVFDQMPQKQLTTIYRFGPNIC 3321 Query 303 DLIKGIY-PYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVVT 361 I+ Y E T+VVF P G V+T YHKDR TIDS QG TF +VT Sbjct 3322 AAIQPCYREKLESKARNTRVVFTTRP-VAFGQVLTPYHKDRIGSAITIDSSQGATFDIVT 3380 Query 362 LRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLI 411 L LP+P+SL + RA+VA+TRA L+IYDP +QL T E +L+ Sbjct 3381 LHLPSPKSLNKSRALVAITRARHGLFIYDPHNQLQEFFNLTPERTDCNLV 3430 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV SD 01-08] Sequence ID: A0MD28.2 Length: 3838 Range 1: 3027 to 3413 Score:156 bits(394), Expect:1e-39, Method:Compositional matrix adjust., Identities:143/410(35%), Positives:197/410(48%), Gaps:25/410(6%) Query 4 CTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSPKQM 63 C +C A SACG C +H HC T +CGH R C+ C+ SP Sbjct 3027 CGICDAKADHASACGLDLCLFHSHFHQ-HCPVT---LSCGHHAGSRE--CSQCQ-SP--- 3076 Query 64 VPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNIVFG 123 V P LD +L I Y + + V + T PGRY+ +VAV + GN V Sbjct 3077 VGAGRSP-LDAVLKQIPYKPPRTVIMKVGNKTTALDPGRYQSRRGLVAVKRGIAGNEV-D 3134 Query 124 CGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSATLVV 183 G + VPL T K + + K N S+++ GPPGSGKT L+ V + Sbjct 3135 LPDGDYQVVPLLPTCKDINMVKVACNVLLSKFIVGPPGSGKTTWLLSQVQ---DDDVIYT 3191 Query 184 PTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGET-FVDEV 242 PTH +M D ++ LK + +P + L FP P VRL G G T ++DE Sbjct 3192 PTHQTMFDIVSALKVC----RYSIPGASGLPFPPPARSGPWVRLVASGHVPGRTSYLDEA 3247 Query 243 AYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAAVC 302 Y + +D+ R+L++ + GDL QL VG S ++ + + L +RFG +C Sbjct 3248 GYCNHLDILRLLSKTPLVCLGDLQQLHPVGFDSY---CYVFDQMPQKQLTTIYRFGPNIC 3304 Query 303 DLIKGIY-PYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVVT 361 I+ Y E T+VVF P G V+T YHKDR TIDS QG TF +VT Sbjct 3305 AAIQPCYREKLESKARNTRVVFTTWP-VAFGQVLTPYHKDRIGSAITIDSSQGATFDIVT 3363 Query 362 LRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLI 411 L LP+P+SL + RA+VA+TRA L+IYDP +QL E +L+ Sbjct 3364 LHLPSPKSLNKSRALVAITRARHGLFIYDPHNQLQEFFNLIPERTDCNLV 3413 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus C] Sequence ID: Q06502.2 Length: 3637 Range 1: 2871 to 3253 Score:155 bits(391), Expect:4e-39, Method:Compositional matrix adjust., Identities:137/412(33%), Positives:199/412(48%), Gaps:37/412(8%) Query 4 CTVCGAAPVAKSACGGWFCGNCVPYHA-GHCHTTSLFANCGHDIMYRSTYCTMCEGSPKQ 62 C CGA S+CG C YH GH H + CGH + S C C Sbjct 2871 CAHCGAPSTLVSSCGLNLCD----YHGHGHPHCPVVLP-CGHAV--GSGVCDGCSSPVMS 2923 Query 63 MVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNIVF 122 + + LD LL + Y + L V DG ++ PPGRY+ VV+V D+ GN+V Sbjct 2924 LNTE-----LDKLLACVPYHPPKVELLSVNDGVSSLPPGRYQARGGVVSVRRDILGNVV- 2977 Query 123 GCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSATLV 182 G + + + T + + + S+++ G PG+GKT +L+ V + Sbjct 2978 DLPDGDYQVMKVAQTCADICMVSINSHILRSQFITGAPGTGKTTYLLS---VVRDDDVIY 3034 Query 183 VPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFVDE 241 PTH +MLD + L DP PK T L+FP P VRL + G G +++DE Sbjct 3035 TPTHRTMLDVVKALGTCRFDP----PKDTPLEFPVPSRTGPCVRLIRAGFIPGRVSYLDE 3090 Query 242 VAYFSPVDLARILTQGRVKGYGDLNQL---GCVGPASVPRNLWLRHFVSLEPLRVCHRFG 298 AY +P+D+ +IL++ + GDLNQL +GP + R + + RFG Sbjct 3091 AAYCNPLDVLKILSKTPLVCVGDLNQLPPVDFIGPCYAFALMLGRQLIEV------FRFG 3144 Query 299 AAVCDLIKGIY--PYYEPAPHT-TKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGC 355 ++ + IK Y P T K + P G V+T YH+DR G TIDS QGC Sbjct 3145 PSIVNPIKKFYREELVSRGPDTGVKFLKSYQP---YGQVLTPYHRDRVDGAITIDSSQGC 3201 Query 356 TFPVVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEA 407 T+ V+T+ LPTP+SL RA+VA+TRA +++YDP +QL L ++ A Sbjct 3202 TYDVITVYLPTPKSLNSARALVAITRARFYVFVYDPHNQLEQYLNMSEHEPA 3253 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV HB-1(sh)/2002] Sequence ID: Q8B912.3 Length: 3961 Range 1: 3148 to 3527 Score:150 bits(380), Expect:1e-37, Method:Compositional matrix adjust., Identities:137/403(34%), Positives:190/403(47%), Gaps:25/403(6%) Query 1 SAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 60 S +C C A +ACG C +H HC + CGH S C CE Sbjct 3148 SRMCGYCMAPAPYATACGLDVCVYHTHFHQ-HC---PVIIWCGHPA--GSGSCGECEPP- 3200 Query 61 KQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggNI 120 + K P LD +L + Y + + V G T PGRY+ +V+V + GN Sbjct 3201 ---LGKGTSP-LDEVLEQVPYKPPRTVIMHVEQGLTPLDPGRYQTRRGLVSVRRGIRGNE 3256 Query 121 VFGCGPGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAVVGSAT 180 V G + + L T K + + N S ++ GPPG+GKT L++ V Sbjct 3257 V-DLPDGDYASTALLPTCKEINMVAVAPNVLRSRFIIGPPGAGKTHWLLQQVQ---DGDV 3312 Query 181 LVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGE-TFV 239 + PTH +MLD I L F VP T L FP P VR+ G G+ +F+ Sbjct 3313 IYTPTHQTMLDMIRALGTC----RFNVPAGTTLQFPAPSRTGPWVRILAGGWCPGKNSFL 3368 Query 240 DEVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGA 299 DE AY + +D+ R+L++ + GD QL VG S + ++ + L+ RFG Sbjct 3369 DEAAYCNHLDVLRLLSKTTLTCLGDFKQLHPVGFDS---HCYVFDIMPQTQLKTIWRFGQ 3425 Query 300 AVCDLIKGIY-PYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFP 358 +CD I+ Y +TT+V +V P G V+T YH+DR G TIDS QG TF Sbjct 3426 NICDAIQPDYRDKLVSMVNTTRVTYVEKP-VRYGQVLTPYHRDREDGAITIDSSQGATFD 3484 Query 359 VVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKF 401 VVTL LPT SL R RA+VA+TRA +++YDP QL + Sbjct 3485 VVTLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQLQSMFDL 3527 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Simian hemorrhagic fever virus] Sequence ID: Q68772.4 Length: 3595 Range 1: 2751 to 3128 Score:130 bits(327), Expect:6e-31, Method:Compositional matrix adjust., Identities:133/412(32%), Positives:188/412(45%), Gaps:52/412(12%) Query 3 VCTVCGAAPVAKSACGGWFCGNCVP--YHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSP 60 VC++C + S CG C C YH G CH S F C H I S C MC Sbjct 2751 VCSICCSTARTTSLCGMALCDFCAHRHYHPG-CHVLSSF--CKHVI--GSNTCKMCS--- 2802 Query 61 KQMVPKVPHPI-LDHLLCHIDYGSKEELTLVVADGRTTSPPGRYkvghkvvavvadvggN 119 +P + LL Y S + + V DG T + PGRY K + + Sbjct 2803 ---IPILKDRTKFAELLASDQYRSVCTVEVTVVDGYTDAAPGRYSYQKKQYMLRKERR-- 2857 Query 120 IVFGCG----PGSHIAVPLQDTlkgvvvnkalknaaaSEYVEGPPGSGKTFHLVKDVLAV 175 GC G + L ++ G+ V KA +NA S +V GPPGSGKT + ++L Sbjct 2858 ---GCPLDLPDGKYSMKLLPNSCSGICVPKAQENATLSNFVVGPPGSGKT-TFISNLLD- 2912 Query 176 VGSATLVVPTHASMLDCINKLKQAGADPYFVVPK-YTVLDFPRPGSGNITVRLPQVGTSE 234 A + PTH S++ L A F VP+ ++ P T++L G Sbjct 2913 -DDAVVYCPTHVSLIAYSKSLPAA----RFSVPRGQDPAEYGTPALSGPTLQLLSAGYVP 2967 Query 235 G-ETFVDEVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRV 293 G + ++DE Y +P D+ ++L++ + GD QL VG L++ + L Sbjct 2968 GAKHYLDEACYANPFDVFKLLSKTPITAIGDPAQLTPVG---FDTPLYVFELMKKNALHA 3024 Query 294 CHRFGAAVCDLIKGIYPYYEPAPHTTKVVFVPNPDFE---------KGVVITAYHKDRGL 344 +RFG +C+ I+ Y +TK+V D E +G V+T YH+DR Sbjct 3025 IYRFGQNICNAIQPCY--------STKLVSQRQGDTEVIFQTKFAPRGKVLTPYHRDRVG 3076 Query 345 GHRTIDSIQGCTFPVVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLS 396 TIDS QG T+ VVTL LPT SLT R +V +TRA + LY+YDP QL+ Sbjct 3077 AAVTIDSSQGSTYDVVTLYLPTKGSLTLARGLVGITRARERLYVYDPHHQLA 3128