########################################
# Program: needle
# Rundate: Thu 13 Mar 2008 00:04:40
# Commandline: needle
#    [-asequence] ort.fasta
#    [-bsequence] pyrg.fasta
#    [-outfile] a1.txt
#    -auto
# Align_format: srspair
# Report_file: a1.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 
# 2: 
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 545
# Identity:     286/545 (52.5%)
# Similarity:   322/545 (59.1%)
# Gaps:         169/545 (31.0%)
# Score: 1508.0
# 
#
#=======================================

                   0 --------------------------------------------------      0
                                                                       
                   1 MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPG     50

                   0 --------------------------------------------------      0
                                                                       
                  51 TMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVL    100

                   0 --------------------------------------------------      0
                                                                       
                 101 RKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIES    150

                   1 -------------------mfmhltlvpylaaagevktkptqhsvkells     31
                                        :|||||||||:||:|||||||||||||||||
                 151 LPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLS    200

                  32 igiqpdilvcrsdrmipanerkkialfcnvpekavismkdvdsiykipql     81
                     ||||||||:|||||.:|||||.|||||||||||||||:||||||||||.|
                 201 IGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGL    250

                  82 irsqglddlvcarfginapeadlseweqviyeeanptgevtigmvgkyte    131
                     ::||||||.:|.||.:|.|||:||||||||:|||||..||||||||||.|
                 251 LKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIE    300

                 132 lpdayksvnealkhaglknrlsvtikyvdsqdvetkgtdvlngldailvp    181
                     ||||||||.|||||.|||||:||.||.:|||||||:|.::|.||||||||
                 301 LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVP    350

                 182 ggfgdrgiegkiraaqyarenkipylgiclgmqvalieyarnvagmegah    231
                     ||||.||:||.|..|::||||.|||||||||||||||:|||:||.||.|:
                 351 GGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENAN    400

                 232 stefnkntkypvvglitewvdgegnveerseksdlggtmrlgsqlchlek    281
                     ||||..:.|||||.|||||.|..||||.||||||||||||||:|.|.|..
                 401 STEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD    450

                 282 gtkayelygsatiherhrhryevnnllrpqiekaglkvsglsadkklvev    331
                     .:...:||.:.||.|||||||||||:|..|||.|||:|:|.|.|.:|||:
                 451 DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEI    500

                 332 ienpahpwfvaaqfhpeftstprdghplfagfvkaagqfqrgelk    376
                     ||.|.||||||.||||||||||||||||||||||||.:||:.:.|
                 501 IEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK    545


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