######################################## # Program: needle # Rundate: Thu 13 Mar 2008 00:44:19 # Commandline: needle # [-asequence] ort_gen.fasta # [-bsequence] pyrg_gen.fasta # [-outfile] a2.txt # -auto # Align_format: srspair # Report_file: a2.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: # 2: # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1692 # Identity: 838/1692 (49.5%) # Similarity: 838/1692 (49.5%) # Gaps: 615/1692 (36.3%) # Score: 2857.0 # # #======================================= 0 -------------------------------------------------- 0 1 atgacaacgaactatatttttgtgaccggcggggtcgtatcctctctggg 50 0 -------------------------------------------------- 0 51 taaaggcattgccgcagcctccctcgcagccattcttgaagcccgtggcc 100 0 -------------------------------------------------- 0 101 tcaatgtgaccatcatgaaactggatccgtacatcaacgtcgatccaggt 150 0 -------------------------------------------------- 0 151 actatgagcccaatccaacacggggaagtgttcgttactgaagacggcgc 200 0 -------------------------------------------------- 0 201 tgaaaccgacctggacctggggcactacgagcgtttcattcgtaccaaaa 250 0 -------------------------------------------------- 0 251 tgagccgccgcaacaacttcaccacgggtcgtatctactctgacgttctg 300 0 -------------------------------------------------- 0 301 cgtaaagaacgccgcggtgactacctcggcgcaaccgtgcaggttattcc 350 0 -------------------------------------------------- 0 351 gcacatcactaacgcaatcaaagagcgcgtgctggaaggtggcgaaggtc 400 0 -------------------------------------------------- 0 401 atgacgtagtactggtagaaatcggcggtacagtaggtgatatcgaatcc 450 0 -------------------------------------------------- 0 451 ttgccgttcctcgaagcgattcgccagatggctgttgaaattggccgtga 500 1 -------atgttcatgcatctgacgctggttccttacctagcggcagcg- 42 .||||.|||||.|||||||||||.||.|||.| ||||||| 501 gcacactctgtttatgcacctgacgctggtgccgtacat---ggcagcgt 547 43 --ggcgaagtgaaaacaaagccaactcaacattcggtaaaagagctgctt 90 ||.|||||.|||||.||.||.|||||.||.||.||||||||||||||. 548 ctggtgaagtcaaaaccaaaccgactcagcactctgtaaaagagctgctc 597 91 tctatcggtattcagccagacattctggtttgccgtagcgatcg-tatga 139 ||.||||||||.|||||.|||||.|||.||||.|||...||||| ..|| 598 tccatcggtatccagcctgacatcctgatttgtcgttcagatcgcgctg- 646 140 tcccagccaacgagcgtaagaaaattgctctgttctgtaacgtgcctgaa 189 |.||.||.|||||.|||..|||.|||||..||||||||||.||.||.||| 647 ttccggcgaacgaacgtgcgaagattgcattgttctgtaatgttccggaa 696 190 aaagccgttatctcaatgaaagacgtggattctatctacaagatcccaca 239 |||||.|||||.||..||||||||||.|||||.|||||.||.||.||... 697 aaagcggttatttctctgaaagacgtcgattccatctataaaattccggg 746 240 actgatccgctctcaagggttggatgatttggtgtgtgcacgttttggca 289 .|||.|....|||||.|||.||||.||||...|.|||..|||.||..||. 747 cctgttgaaatctcaggggctggacgattatatttgtaaacgattcagct 796 290 ttaac-gcgccagaagcggatctctctgaatgggaacaggtgatttacga 338 |.||| || ||.||||||.||||.||.||||||||||||||.||.|.||| 797 taaactgc-ccggaagcgaatctgtccgaatgggaacaggttatcttcga 845 339 agaagcgaaccc---aaccggtgaagtgactatcggtatggttggtaagt 385 |||||||||||| || |||||||.||.|||||||||||.||.|||| 846 agaagcgaacccggtaa---gtgaagtcaccatcggtatggtcggcaagt 892 386 acaccgaactgccagatgcttacaaatcggtcaacgaagccctgaaacac 435 |||..||||||||.||||||||.|||||.||.|.||||||.||||||||| 893 acattgaactgccggatgcttataaatcagtgatcgaagcactgaaacac 942 436 gccggtctgaagaaccgtctgagcgtgaccatcaaatacgtagattcaca 485 |..||.||||||||.|||.|.|||||.|.|||||||....|.|||||||| 943 ggtgggctgaagaatcgtgtcagcgtcaacatcaaactgatcgattcaca 992 486 agacgttgaaaccaaaggcac-----cgatgtgctcaatggtctggatgc 530 |||.|||||||| ||.| .||..|.||.||.||||||||.|| 993 agatgttgaaac-----gcgcgggcttgaaatccttaaaggtctggacgc 1037 531 gattttggtaccgggtggttttggcgatcgtggtatcgaaggcaaaat-- 578 .||..|.|||||.||.|||||.|||.|||||||..|.|||||||..|| 1038 aatcctcgtacctggcggtttcggctatcgtggcgtagaaggcatgatta 1087 579 ---ccgtgcagcgcaatatgcacgtgaaaacaaaattccttaccttggca 625 || ||||..|.|||.|||||.|||||.||||||||.||.|||| 1088 cgacc-----gcgcgttttgcgcgtgagaacaatattccttatctgggca 1132 626 tctgcttgggtatgcaagtggcactcattgaatacgcgcgcaatgtagcg 675 |.|||.||||||||||.|||||..|.|||||.|||||.|||.||||.||. 1133 tttgcctgggtatgcaggtggcgttaattgattacgctcgccatgttgcc 1182 676 ggtatggaaggtgcac----actcaaccgaatt-----caataaaaacac 716 ...||||| |.|| ||||.||.||||| | |.||.. 1183 aacatgga----gaacgccaactctacggaatttgtgcc-----agactg 1223 717 caaataccctgtggttggtttgatcacggaatgggtagatggcgaaggca 766 .||.|||||.||.||.|...||||.||.||.|||...||||...|.|||| 1224 taagtacccggttgtggcgctgattaccgagtggcgcgatgaaaacggca 1273 767 atgtcgaagagcgtagcgagaa-atcagatctgggcggtaccatgcgtct 815 |.||.||||..||||||||||| |.| |||||.||||||||||||||||| 1274 acgttgaagttcgtagcgagaagagc-gatctcggcggtaccatgcgtct 1322 816 aggttcacagctatgcca---ccttgagaaaggcactaaagc---gtacg 859 .||..||||||..||||| ..||| ||.|.||| ||.|| 1323 cggcgcacagcagtgccagttggttg--------acgatagcctggttcg 1364 860 --agttgtacggtagcg-caaccattcatgagcgtcaccgccaccgttac 906 ||.|||||..| ||| |.||.|||..|||||||||.||.||||||||| 1365 ccagctgtacaat-gcgccgacaattgttgagcgtcatcgtcaccgttac 1413 907 gaagtcaacaac---ctgctgcgtcctcagattgaaaaagcaggtttgaa 953 |||||||||||| |||.|| ...|||||||||.|.||||||.||.. 1414 gaagtcaacaacagtctgttg---aaacagattgaagatgcaggtctgcg 1460 954 ggtttctggtctgtcagcagataagaagctggttgaagtgattga----- 998 .|||.|.||.|..||.|..|||.|..||.||||.||..|.||.|| 1461 cgttgcgggccgttccggggatgatcagttggtcgagatcatcgaagttc 1510 999 -gaaccctgctcacccatggtttgtggc-agcgcagttccacccagagtt 1046 ||| ||||||.|||||.||||| .|| ||||||||.||.||||| 1511 cgaa------tcacccgtggttcgtggcttgc-cagttccatccggagtt 1553 1047 cacctcaaccccacgcgatggtcaccctctgtttgctggctttgtaaaag 1096 .||.||.||.|||||.|||||||||||.||||||||.||||||||.|||| 1554 tacttctactccacgtgatggtcacccgctgtttgcaggctttgtgaaag 1603 1097 ----cagcgggtcagttcc---aacgcggtgaattgaagtaa 1131 ||||| |||||| ||| ||.|...||||||| 1604 ccgccagcg----agttccagaaac---gtcaggcgaagtaa 1638 #--------------------------------------- #---------------------------------------