######################################## # Program: needle # Rundate: Thu 13 Mar 2008 00:44:02 # Commandline: needle # [-asequence] ort_gen.fasta # [-bsequence] pyrg_gen.fasta # [-outfile] b2.txt # -gapopen 20 # -gapextend 1 # Align_format: srspair # Report_file: b2.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: # 2: # Matrix: EDNAFULL # Gap_penalty: 20.0 # Extend_penalty: 1.0 # # Length: 1638 # Identity: 807/1638 (49.3%) # Similarity: 807/1638 (49.3%) # Gaps: 507/1638 (31.0%) # Score: 2739.0 # # #======================================= 0 -------------------------------------------------- 0 1 atgacaacgaactatatttttgtgaccggcggggtcgtatcctctctggg 50 0 -------------------------------------------------- 0 51 taaaggcattgccgcagcctccctcgcagccattcttgaagcccgtggcc 100 0 -------------------------------------------------- 0 101 tcaatgtgaccatcatgaaactggatccgtacatcaacgtcgatccaggt 150 0 -------------------------------------------------- 0 151 actatgagcccaatccaacacggggaagtgttcgttactgaagacggcgc 200 0 -------------------------------------------------- 0 201 tgaaaccgacctggacctggggcactacgagcgtttcattcgtaccaaaa 250 0 -------------------------------------------------- 0 251 tgagccgccgcaacaacttcaccacgggtcgtatctactctgacgttctg 300 0 -------------------------------------------------- 0 301 cgtaaagaacgccgcggtgactacctcggcgcaaccgtgcaggttattcc 350 0 -------------------------------------------------- 0 351 gcacatcactaacgcaatcaaagagcgcgtgctggaaggtggcgaaggtc 400 0 -------------------------------------------------- 0 401 atgacgtagtactggtagaaatcggcggtacagtaggtgatatcgaatcc 450 0 -------------------------------------------------- 0 451 ttgccgttcctcgaagcgattcgccagatggctgttgaaattggccgtga 500 1 -------atgttcatgcatctgacgctggttccttacctagcggcagcgg 43 .||||.|||||.|||||||||||.||.|||.|.||.||..|.| 501 gcacactctgtttatgcacctgacgctggtgccgtacatggcagcgtctg 550 44 gcgaagtgaaaacaaagccaactcaacattcggtaaaagagctgctttct 93 |.|||||.|||||.||.||.|||||.||.||.||||||||||||||.||. 551 gtgaagtcaaaaccaaaccgactcagcactctgtaaaagagctgctctcc 600 94 atcggtattcagccagacattctggtttgccgtagcgatcgtatgatccc 143 ||||||||.|||||.|||||.|||.||||.|||...|||||.....|.|| 601 atcggtatccagcctgacatcctgatttgtcgttcagatcgcgctgttcc 650 144 agccaacgagcgtaagaaaattgctctgttctgtaacgtgcctgaaaaag 193 .||.|||||.|||..|||.|||||..||||||||||.||.||.||||||| 651 ggcgaacgaacgtgcgaagattgcattgttctgtaatgttccggaaaaag 700 194 ccgttatctcaatgaaagacgtggattctatctacaagatcccacaactg 243 |.|||||.||..||||||||||.|||||.|||||.||.||.||....||| 701 cggttatttctctgaaagacgtcgattccatctataaaattccgggcctg 750 244 atccgctctcaagggttggatgatttggtgtgtgcacgttttggcattaa 293 .|....|||||.|||.||||.||||...|.|||..|||.||..||.|.|| 751 ttgaaatctcaggggctggacgattatatttgtaaacgattcagcttaaa 800 294 cgcgccagaagcggatctctctgaatgggaacaggtgatttacgaagaag 343 |...||.||||||.||||.||.||||||||||||||.||.|.|||||||| 801 ctgcccggaagcgaatctgtccgaatgggaacaggttatcttcgaagaag 850 344 cgaacccaaccggtgaagtgactatcggtatggttggtaagtacaccgaa 393 |||||||.....|||||||.||.|||||||||||.||.|||||||..||| 851 cgaacccggtaagtgaagtcaccatcggtatggtcggcaagtacattgaa 900 394 ctgccagatgcttacaaatcggtcaacgaagccctgaaacacgccggtct 443 |||||.||||||||.|||||.||.|.||||||.||||||||||..||.|| 901 ctgccggatgcttataaatcagtgatcgaagcactgaaacacggtgggct 950 444 gaagaaccgtctgagcgtgaccatcaaatacgtagattcacaagacgttg 493 ||||||.|||.|.|||||.|.|||||||....|.|||||||||||.|||| 951 gaagaatcgtgtcagcgtcaacatcaaactgatcgattcacaagatgttg 1000 494 aaaccaaaggcaccgatgtgctcaatggtctggatgcgattttggtaccg 543 ||||....||....||..|.||.||.||||||||.||.||..|.|||||. 1001 aaacgcgcgggcttgaaatccttaaaggtctggacgcaatcctcgtacct 1050 544 ggtggttttggcgatcgtggtatcgaaggcaaaatccgtgcagcgcaata 593 ||.|||||.|||.|||||||..|.|||||||..||.....|.||||..|. 1051 ggcggtttcggctatcgtggcgtagaaggcatgattacgaccgcgcgttt 1100 594 tgcacgtgaaaacaaaattccttaccttggcatctgcttgggtatgcaag 643 |||.|||||.|||||.||||||||.||.|||||.|||.||||||||||.| 1101 tgcgcgtgagaacaatattccttatctgggcatttgcctgggtatgcagg 1150 644 tggcactcattgaatacgcgcgcaatgtagcgggtatggaaggtgcacac 693 ||||..|.|||||.|||||.|||.||||.||....|||||....||..|| 1151 tggcgttaattgattacgctcgccatgttgccaacatggagaacgccaac 1200 694 tcaaccgaattcaataaaaacaccaaataccctgtggttggtttgatcac 743 ||.||.|||||......|.||...||.|||||.||.||.|...||||.|| 1201 tctacggaatttgtgccagactgtaagtacccggttgtggcgctgattac 1250 744 ggaatgggtagatggcgaaggcaatgtcgaagagcgtagcgagaaatcag 793 .||.|||...||||...|.|||||.||.||||..|||||||||||....| 1251 cgagtggcgcgatgaaaacggcaacgttgaagttcgtagcgagaagagcg 1300 794 atctgggcggtaccatgcgtctaggttcacagctatgccaccttgagaaa 843 ||||.|||||||||||||||||.||..||||||..|||||..|.|...|. 1301 atctcggcggtaccatgcgtctcggcgcacagcagtgccagttggttgac 1350 844 ggcactaaagcgtacgagttgtacggtagcgcaaccattcatgagcgtca 893 |..|.....|....|.||.|||||..|....|.||.|||..||||||||| 1351 gatagcctggttcgccagctgtacaatgcgccgacaattgttgagcgtca 1400 894 ccgccaccgttacgaagtcaacaacctgctgcgtcctcagattgaaaaag 943 .||.|||||||||||||||||||||...|||......|||||||||.|.| 1401 tcgtcaccgttacgaagtcaacaacagtctgttgaaacagattgaagatg 1450 944 caggtttgaaggtttctggtctgtcagcagataagaagctggttgaagtg 993 |||||.||...|||.|.||.|..||.|..|||.|..||.||||.||..|. 1451 caggtctgcgcgttgcgggccgttccggggatgatcagttggtcgagatc 1500 994 attgagaaccctgctcacccatggtttgtggcagcgcagttccacccaga 1043 ||.||....||...||||||.|||||.|||||....||||||||.||.|| 1501 atcgaagttccgaatcacccgtggttcgtggcttgccagttccatccgga 1550 1044 gttcacctcaaccccacgcgatggtcaccctctgtttgctggctttgtaa 1093 |||.||.||.||.|||||.|||||||||||.||||||||.||||||||.| 1551 gtttacttctactccacgtgatggtcacccgctgtttgcaggctttgtga 1600 1094 aagcagcgggtcagttccaacgcggtgaattgaagtaa 1131 ||||.||..|..|||||||.....||.|...||||||| 1601 aagccgccagcgagttccagaaacgtcaggcgaagtaa 1638 #--------------------------------------- #---------------------------------------