******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= housekeeping_pr9_sem4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ scpB 1.0000 100 rplT 1.0000 100 rpmI 1.0000 100 cds-QOL34389.1 1.0000 100 cds-QOL35303.1 1.0000 100 cds-QOL34402.1 1.0000 100 cds-QOL34409.1 1.0000 100 cds-QOL34410.1 1.0000 100 nrdR 1.0000 100 lexA 1.0000 100 dnaE 1.0000 100 cds-QOL34470.1 1.0000 100 cds-QOL34504.1 1.0000 100 cds-QOL34514.1 1.0000 100 cds-QOL34518.1 1.0000 100 cds-QOL34520.1 1.0000 100 cds-QOL34525.1 1.0000 100 cds-QOL34528.1 1.0000 100 cds-QOL34530.1 1.0000 100 cds-QOL34545.1 1.0000 100 cds-QOL34546.1 1.0000 100 cds-QOL34549.1 1.0000 100 cds-QOL34565.1 1.0000 100 cds-QOL34572.1 1.0000 100 cds-QOL34583.1 1.0000 100 rpmE 1.0000 100 cds-QOL34610.1 1.0000 100 cds-QOL34611.1 1.0000 100 cds-QOL35326.1 1.0000 100 cds-QOL34629.1 1.0000 100 cds-QOL34641.1 1.0000 100 cds-QOL34667.1 1.0000 100 cds-QOL35332.1 1.0000 100 cds-QOL34674.1 1.0000 100 cds-QOL34676.1 1.0000 100 cds-QOL34689.1 1.0000 100 cds-QOL34700.1 1.0000 100 cds-QOL34735.1 1.0000 100 cds-QOL34746.1 1.0000 100 cds-QOL35345.1 1.0000 100 rplS 1.0000 100 rpmF 1.0000 100 cds-BL8807_02335 1.0000 100 cds-QOL34771.1 1.0000 100 rpsP 1.0000 100 cds-QOL35352.1 1.0000 100 rpsO 1.0000 100 rplA 1.0000 100 rplK 1.0000 100 cds-QOL34818.1 1.0000 100 nusG 1.0000 100 cds-QOL34826.1 1.0000 100 rpmA 1.0000 100 rplU 1.0000 100 cds-QOL34846.1 1.0000 100 cds-QOL35361.1 1.0000 100 cds-QOL34872.1 1.0000 100 cds-QOL34884.1 1.0000 100 cds-QOL35364.1 1.0000 100 cds-QOL34895.1 1.0000 100 cds-QOL34896.1 1.0000 100 cds-QOL34910.1 1.0000 100 cds-QOL35366.1 1.0000 100 cds-QOL34922.1 1.0000 100 cds-QOL34944.1 1.0000 100 cds-QOL34949.1 1.0000 100 cds-QOL35373.1 1.0000 100 cds-QOL34958.1 1.0000 100 cds-QOL34962.1 1.0000 100 cds-QOL35377.1 1.0000 100 cds-QOL34974.1 1.0000 100 cds-QOL34980.1 1.0000 100 cds-QOL34989.1 1.0000 100 cds-QOL34994.1 1.0000 100 cds-QOL35016.1 1.0000 100 cds-QOL35022.1 1.0000 100 cds-QOL35029.1 1.0000 100 cds-QOL35380.1 1.0000 100 cds-QOL35047.1 1.0000 100 dnaN 1.0000 100 cds-QOL35083.1 1.0000 100 cds-QOL35105.1 1.0000 100 cds-QOL35106.1 1.0000 100 cds-QOL35119.1 1.0000 100 cds-QOL35123.1 1.0000 100 cds-QOL35126.1 1.0000 100 cds-QOL35150.1 1.0000 100 cds-QOL35152.1 1.0000 100 cds-QOL35165.1 1.0000 100 cds-QOL35166.1 1.0000 100 cds-QOL35171.1 1.0000 100 cds-QOL35176.1 1.0000 100 cds-QOL35239.1 1.0000 100 cds-QOL35244.1 1.0000 100 cds-QOL35253.1 1.0000 100 cds-QOL35263.1 1.0000 100 cds-QOL35267.1 1.0000 100 cds-QOL35292.1 1.0000 100 rpsF 1.0000 100 cds-QOL33295.1 1.0000 100 rplI 1.0000 100 cds-QOL33298.1 1.0000 100 cds-QOL33310.1 1.0000 100 rho 1.0000 100 cds-QOL33314.1 1.0000 100 cds-QOL33318.1 1.0000 100 cds-QOL33328.1 1.0000 100 cds-QOL33331.1 1.0000 100 atpB 1.0000 100 atpE 1.0000 100 cds-QOL33339.1 1.0000 100 cds-QOL33340.1 1.0000 100 cds-QOL33341.1 1.0000 100 cds-QOL33342.1 1.0000 100 cds-QOL33343.1 1.0000 100 cds-QOL35417.1 1.0000 100 cds-QOL33350.1 1.0000 100 cds-QOL33359.1 1.0000 100 cds-QOL33362.1 1.0000 100 cds-QOL35426.1 1.0000 100 cds-QOL35427.1 1.0000 100 rplJ 1.0000 100 rplL 1.0000 100 cds-QOL35428.1 1.0000 100 rpmG 1.0000 100 dinB 1.0000 100 rplM 1.0000 100 rpsI 1.0000 100 cds-QOL33418.1 1.0000 100 rpsJ 1.0000 100 rplC 1.0000 100 rplD 1.0000 100 rplW 1.0000 100 rplB 1.0000 100 rpsS 1.0000 100 rplV 1.0000 100 rpsC 1.0000 100 rplP 1.0000 100 rpmC 1.0000 100 rpsQ 1.0000 100 rplN 1.0000 100 rplX 1.0000 100 rplE 1.0000 100 cds-QOL33434.1 1.0000 100 rpsH 1.0000 100 rplF 1.0000 100 rplR 1.0000 100 rpsE 1.0000 100 rpmD 1.0000 100 rplO 1.0000 100 infA 1.0000 100 rpmJ 1.0000 100 rpsM 1.0000 100 rpsK 1.0000 100 cds-QOL33447.1 1.0000 100 rplQ 1.0000 100 nusA 1.0000 100 infB 1.0000 100 cds-QOL33467.1 1.0000 100 cds-QOL33476.1 1.0000 100 cds-BL8807_06610 1.0000 100 cds-QOL33490.1 1.0000 100 cds-QOL33509.1 1.0000 100 cds-QOL33524.1 1.0000 100 cds-QOL35438.1 1.0000 100 cds-QOL33538.1 1.0000 100 cds-QOL33544.1 1.0000 100 cds-QOL33552.1 1.0000 100 cds-QOL35441.1 1.0000 100 cds-QOL33560.1 1.0000 100 cds-QOL33564.1 1.0000 100 cds-QOL33570.1 1.0000 100 cds-QOL33577.1 1.0000 100 cds-QOL33587.1 1.0000 100 cds-QOL35447.1 1.0000 100 cds-QOL33619.1 1.0000 100 cds-QOL33623.1 1.0000 100 rpsG 1.0000 100 fusA 1.0000 100 tuf 1.0000 100 cds-QOL33627.1 1.0000 100 efp 1.0000 100 nusB 1.0000 100 cds-QOL33638.1 1.0000 100 cds-QOL35455.1 1.0000 100 cds-QOL33737.1 1.0000 100 tenA 1.0000 100 mfd 1.0000 100 cds-QOL33752.1 1.0000 100 cds-BL8807_08200 1.0000 100 cds-QOL33764.1 1.0000 100 cds-QOL33772.1 1.0000 100 cds-QOL33778.1 1.0000 100 cds-QOL33782.1 1.0000 100 cds-QOL35464.1 1.0000 100 cds-QOL35465.1 1.0000 100 cds-QOL33793.1 1.0000 100 rpsA 1.0000 100 cds-QOL33808.1 1.0000 100 polA 1.0000 100 cds-QOL33865.1 1.0000 100 cds-QOL33881.1 1.0000 100 cds-QOL35477.1 1.0000 100 rpsB 1.0000 100 cds-QOL33947.1 1.0000 100 cds-QOL33948.1 1.0000 100 cds-QOL33950.1 1.0000 100 cds-QOL33984.1 1.0000 100 hrcA 1.0000 100 cds-QOL35496.1 1.0000 100 cds-QOL34048.1 1.0000 100 cds-QOL34051.1 1.0000 100 cds-QOL34056.1 1.0000 100 cds-QOL34058.1 1.0000 100 rpsT 1.0000 100 cds-QOL34084.1 1.0000 100 cds-QOL34091.1 1.0000 100 cds-QOL34096.1 1.0000 100 rpsD 1.0000 100 cds-QOL34136.1 1.0000 100 cds-QOL35507.1 1.0000 100 cds-QOL34153.1 1.0000 100 cds-QOL34156.1 1.0000 100 cds-QOL35513.1 1.0000 100 cds-QOL34168.1 1.0000 100 cds-QOL34175.1 1.0000 100 ychF 1.0000 100 cds-QOL35525.1 1.0000 100 cds-QOL34236.1 1.0000 100 cds-QOL35527.1 1.0000 100 cds-QOL34245.1 1.0000 100 cds-QOL34251.1 1.0000 100 cds-QOL34252.1 1.0000 100 cds-QOL34258.1 1.0000 100 cds-QOL34260.1 1.0000 100 cds-QOL34277.1 1.0000 100 cds-QOL34287.1 1.0000 100 cds-QOL34292.1 1.0000 100 cds-QOL34296.1 1.0000 100 cds-QOL34307.1 1.0000 100 cds-QOL34308.1 1.0000 100 cds-QOL34311.1 1.0000 100 cds-QOL34319.1 1.0000 100 cds-QOL34329.1 1.0000 100 cds-QOL34339.1 1.0000 100 scpB_2 1.0000 100 rplT_2 1.0000 100 rpmI_2 1.0000 100 cds-QOL34374.1 1.0000 100 cds-BL8807_11880 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme housekeeping_pr9_sem4.fasta -dna -nmotifs 3 -minw 6 -maxw 50 -maxsites 50 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 25000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 25000 norand= no csites= 1000 Letter frequencies in dataset: A 0.233 C 0.28 G 0.274 T 0.213 Background letter frequencies (from file dataset with add-one prior applied): A 0.233 C 0.28 G 0.274 T 0.213 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 width = 50 sites = 7 llr = 273 E-value = 2.0e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::6::::::::6::1::1:::::4373:1:4:3:134:7::::1::3::: pos.-specific C 9::37::7343:67:47::4:a::6:1:6:3337:161:1:3:313:67a probability G 1::73aa:4644433336a31::3:36a:::7:3:::3:9::a:33:::: matrix T :a4::::33:3:::63:3:39:a31:::3a3:4:96:63:a7:664743: bits 2.2 * * * * 2.0 * * * * 1.8 * ** * ** * * * * * 1.6 * ** * *** * * * * * * Relative 1.3 ** ** * *** * * * ***** * * Entropy 1.1 *** *** * * *** * * * * ***** **** (56.3 bits) 0.9 ******** * *** * * *** * * * * ** * ***** **** 0.7 ******** * **** *** *** ** *** * ************ **** 0.4 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel CTAGCGGCGGGACCTCCGGCTCTACAGGCTAGTCTTCTAGTTGTTTTCCC consensus TCG TCCCGGGGGGT G GAGA T CCAG AAGT C CGCATT sequence T T T T T T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- scpB_2 39 3.77e-20 TGGACTCTAC CTACGGGCCGCACCTGCTGCTCTACAGGCTACACTTATAGTCGCTTTCCC TAAAACGTAT scpB 39 3.77e-20 TGGACTCTAC CTACGGGCCGCACCTGCTGCTCTACAGGCTACACTTATAGTCGCTTTCCC TAAAACGTAT rpmI_2 42 6.91e-20 ACCGGCTCCG CTTGCGGTTCTAGCGTGGGGTCTGAAGGCTTGTCTTCTTGTTGTGGTTCC TCCCGTCGT rpmI 42 6.91e-20 ACCGGCTCCG CTTGCGGTTCTAGCGTGGGGTCTGAAGGCTTGTCTTCTTGTTGTGGTTCC TCCCGTCGT rplT_2 7 1.36e-18 GTGGCA CTAGCGGCGGGGCGTCCGGTTCTTCGAGTTCGCGTACGAGTTGTTCACTC GGGGTGGCCT rplT 7 1.36e-18 GTGGCA CTAGCGGCGGGGCGTCCGGTTCTTCGAGTTCGCGTACGAGTTGTTCACTC GGGGTGGCCT cds-QOL34236.1 18 3.05e-15 CGCCTAAGCC GTTGCGGCGCGGGCACCAGCGCTATACGATAGTCACACACTTGACTTTCC AAGTATGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- scpB_2 3.8e-20 38_[+1]_12 scpB 3.8e-20 38_[+1]_12 rpmI_2 6.9e-20 41_[+1]_9 rpmI 6.9e-20 41_[+1]_9 rplT_2 1.4e-18 6_[+1]_44 rplT 1.4e-18 6_[+1]_44 cds-QOL34236.1 3e-15 17_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC width=50 seqs=7 scpB_2 ( 39) CTACGGGCCGCACCTGCTGCTCTACAGGCTACACTTATAGTCGCTTTCCC 1 scpB ( 39) CTACGGGCCGCACCTGCTGCTCTACAGGCTACACTTATAGTCGCTTTCCC 1 rpmI_2 ( 42) CTTGCGGTTCTAGCGTGGGGTCTGAAGGCTTGTCTTCTTGTTGTGGTTCC 1 rpmI ( 42) CTTGCGGTTCTAGCGTGGGGTCTGAAGGCTTGTCTTCTTGTTGTGGTTCC 1 rplT_2 ( 7) CTAGCGGCGGGGCGTCCGGTTCTTCGAGTTCGCGTACGAGTTGTTCACTC 1 rplT ( 7) CTAGCGGCGGGGCGTCCGGTTCTTCGAGTTCGCGTACGAGTTGTTCACTC 1 cds-QOL34236.1 ( 18) GTTGCGGCGCGGGCACCAGCGCTATACGATAGTCACACACTTGACTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 12750 bayes= 10.6739 E= 2.0e-019 -945 161 -94 -945 -945 -945 -945 223 129 -945 -945 101 -945 3 138 -945 -945 135 6 -945 -945 -945 187 -945 -945 -945 187 -945 -945 135 -945 43 -945 3 65 43 -945 61 106 -945 -945 3 65 43 129 -945 65 -945 -945 103 65 -945 -945 135 6 -945 -71 -945 6 142 -945 61 6 43 -945 135 6 -945 -71 -945 106 43 -945 -945 187 -945 -945 61 6 43 -945 -945 -94 201 -945 183 -945 -945 -945 -945 -945 223 88 -945 6 43 29 103 -945 -57 161 -945 6 -945 29 -97 106 -945 -945 -945 187 -945 -71 103 -945 43 -945 -945 -945 223 88 3 -945 43 -945 3 138 -945 29 3 -945 101 -945 135 6 -945 -71 -945 -945 201 29 -97 -945 142 88 103 -945 -945 -945 -97 6 142 161 -945 -945 43 -945 -97 165 -945 -945 -945 -945 223 -945 3 -945 175 -945 -945 187 -945 -71 3 -945 142 -945 -97 6 142 -945 3 6 101 29 -945 -945 175 -945 103 -945 101 -945 135 -945 43 -945 183 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 7 E= 2.0e-019 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.571429 0.000000 0.000000 0.428571 0.000000 0.285714 0.714286 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.285714 0.428571 0.285714 0.000000 0.428571 0.571429 0.000000 0.000000 0.285714 0.428571 0.285714 0.571429 0.000000 0.428571 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.714286 0.285714 0.000000 0.142857 0.000000 0.285714 0.571429 0.000000 0.428571 0.285714 0.285714 0.000000 0.714286 0.285714 0.000000 0.142857 0.000000 0.571429 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.285714 0.285714 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.428571 0.000000 0.285714 0.285714 0.285714 0.571429 0.000000 0.142857 0.714286 0.000000 0.285714 0.000000 0.285714 0.142857 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.571429 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.428571 0.285714 0.000000 0.285714 0.000000 0.285714 0.714286 0.000000 0.285714 0.285714 0.000000 0.428571 0.000000 0.714286 0.285714 0.000000 0.142857 0.000000 0.000000 0.857143 0.285714 0.142857 0.000000 0.571429 0.428571 0.571429 0.000000 0.000000 0.000000 0.142857 0.285714 0.571429 0.714286 0.000000 0.000000 0.285714 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.142857 0.285714 0.000000 0.571429 0.000000 0.142857 0.285714 0.571429 0.000000 0.285714 0.285714 0.428571 0.285714 0.000000 0.000000 0.714286 0.000000 0.571429 0.000000 0.428571 0.000000 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGCGGCBSBRSCKBCKGBTCTDMARGYTHGHCTWMKAGTTGYKBTYCC MEME-1 regular expression -------------------------------------------------------------------------------- CT[AT][GC][CG]GG[CT][GCT][GC][GCT][AG][CG][CG][TG][CGT][CG][GT]G[CGT]TCT[AGT][CA][AG][GA]G[CT]T[ACT][GC][TAC][CG]T[TA][CA][TG][AT]GT[TC]G[TC][TG][TCG][TA][CT][CT]C -------------------------------------------------------------------------------- Time 23.04 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGARV MEME-2 width = 7 sites = 50 llr = 395 E-value = 3.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa::a43 pos.-specific C ::::::4 probability G ::aa:63 matrix T ::::::: bits 2.2 2.0 ** * 1.8 ***** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.4 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******* 0.0 ------- Multilevel AAGGAGC consensus AA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------- cds-QOL34096.1 90 1.33e-04 CACGCCATCC AAGGAGC GCGC cds-QOL34056.1 90 1.33e-04 CGTCGAAACA AAGGAGC CGGC cds-QOL33865.1 66 1.33e-04 AAGGCAGCAG AAGGAGC ACGACAAGTA cds-QOL33793.1 35 1.33e-04 CCCGGATATA AAGGAGA GGTCCATACC nusB 85 1.33e-04 ACGACTACAC AAGGAGA AAGCCATTC cds-QOL33552.1 90 1.33e-04 GTAACCGTCG AAGGAGC GAGT cds-QOL33467.1 62 1.33e-04 ACGGTACCAA AAGGAGC GGAATGCGGC rplQ 88 1.33e-04 GCCGGACAAT AAGGAGA AAACCC rplF 86 1.33e-04 TGTGGTGAGA AAGGAGA GCTAGATC rplN 90 1.33e-04 CAGCTCGGCT AAGGAGA ATCA rpsQ 87 1.33e-04 AACGGAAACT AAGGAGA AGTGATC rplV 85 1.33e-04 CCCGCCGCTA AAGGAGA GAATGACAC cds-QOL33350.1 89 1.33e-04 GCGGAAGATT AAGGAGC GATCA cds-QOL33298.1 90 1.33e-04 GCTGCACGGA AAGGAGC CGCG cds-QOL33295.1 89 1.33e-04 CATAGTTTGT AAGGAGA ACATC cds-QOL35171.1 91 1.33e-04 ATGTTTGCGA AAGGAGC GGT cds-QOL35029.1 91 1.33e-04 TCAAGCCGCG AAGGAGC GCC cds-QOL34989.1 35 1.33e-04 AACCTATTGG AAGGAGA CAGACACGTG cds-QOL34910.1 85 1.33e-04 ATCCGCAGCA AAGGAGC CTGGTCGAT cds-QOL34896.1 90 1.33e-04 CGACCAACGC AAGGAGA CGCC rpsP 88 1.33e-04 CCAACACTAT AAGGAGA GCCATT cds-QOL34771.1 89 1.33e-04 TGCAATATCC AAGGAGC GCAGC cds-QOL34545.1 90 1.33e-04 GCACTCCAGA AAGGAGC GCCG lexA 73 1.33e-04 AGCCGCCCGA AAGGAGC CCCGACGTGA cds-QOL34287.1 90 3.18e-04 GGCACCACGA AAGGAAC GACA cds-QOL35513.1 88 3.18e-04 ACGCCAGCCA AAGGAGG CATATG cds-QOL34051.1 75 3.18e-04 TAGCCCAACT AAGGAGG TGCTTTTTCC cds-QOL33782.1 87 3.18e-04 ATCCAAGCTT AAGGAGG TTCCCAT cds-QOL33752.1 66 3.18e-04 TCTGCCTGCC AAGGAAC CCATCTTAAG tenA 89 3.18e-04 GGAGAAGGGA AAGGAAA AAGCT fusA 90 3.18e-04 CCACAAGTTT AAGGAAA AACA cds-QOL33619.1 90 3.18e-04 GGCAAGCGAC AAGGAAC GGAC cds-QOL33476.1 91 3.18e-04 TGGCCGACGA AAGGAAC TCC rpmJ 91 3.18e-04 GGTACAAGTA AAGGAAA ACC rplJ 91 3.18e-04 CCGACTTAGG AAGGAAC GCC cds-QOL35417.1 84 3.18e-04 TGACATGCAG AAGGAAC TGGGTGCGTG cds-QOL33328.1 90 3.18e-04 TTCACCGCGA AAGGAGG ACGT rho 84 3.18e-04 CGATTGGGCC AAGGAAA GGCACTACCA cds-QOL34994.1 71 3.18e-04 TTTTATACAG AAGGAAA CAAAAAGTCA cds-QOL35364.1 19 3.18e-04 GCTCATCGGA AAGGAAC ATAACGATGG cds-BL8807_02335 90 3.18e-04 AGACGCACCC AAGGAGG AGTC cds-QOL34641.1 90 3.18e-04 CCAGCTAGAG AAGGAAC ATCC cds-QOL34528.1 89 3.18e-04 GGGCAAGGTC AAGGAGG TGCGC cds-QOL34410.1 88 3.18e-04 GCGATGGAGC AAGGAGG TTCACG cds-QOL34175.1 44 3.79e-04 ATACTTCTGC AAGGAAG CGCTTACGCC cds-QOL34084.1 43 3.79e-04 GAACTCACAC AAGGAAG CCGCGCAGCT rplB 85 3.79e-04 GAGAAAGTCA AAGGAAG AACTACATT rplL 89 3.79e-04 CCAAGATGGA AAGGAAG CCATT cds-QOL33343.1 81 3.79e-04 GCTGAACACA AAGGAAG AGTAGGAACG cds-QOL35326.1 9 3.79e-04 GCCATCTC AAGGAAG TTAGCTTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-QOL34096.1 0.00013 89_[+2]_4 cds-QOL34056.1 0.00013 89_[+2]_4 cds-QOL33865.1 0.00013 65_[+2]_28 cds-QOL33793.1 0.00013 34_[+2]_59 nusB 0.00013 84_[+2]_9 cds-QOL33552.1 0.00013 89_[+2]_4 cds-QOL33467.1 0.00013 61_[+2]_32 rplQ 0.00013 87_[+2]_6 rplF 0.00013 85_[+2]_8 rplN 0.00013 89_[+2]_4 rpsQ 0.00013 86_[+2]_7 rplV 0.00013 84_[+2]_9 cds-QOL33350.1 0.00013 88_[+2]_5 cds-QOL33298.1 0.00013 89_[+2]_4 cds-QOL33295.1 0.00013 88_[+2]_5 cds-QOL35171.1 0.00013 90_[+2]_3 cds-QOL35029.1 0.00013 90_[+2]_3 cds-QOL34989.1 0.00013 34_[+2]_59 cds-QOL34910.1 0.00013 84_[+2]_9 cds-QOL34896.1 0.00013 89_[+2]_4 rpsP 0.00013 87_[+2]_6 cds-QOL34771.1 0.00013 88_[+2]_5 cds-QOL34545.1 0.00013 89_[+2]_4 lexA 0.00013 72_[+2]_21 cds-QOL34287.1 0.00032 89_[+2]_4 cds-QOL35513.1 0.00032 87_[+2]_6 cds-QOL34051.1 0.00032 74_[+2]_19 cds-QOL33782.1 0.00032 86_[+2]_7 cds-QOL33752.1 0.00032 65_[+2]_28 tenA 0.00032 88_[+2]_5 fusA 0.00032 89_[+2]_4 cds-QOL33619.1 0.00032 89_[+2]_4 cds-QOL33476.1 0.00032 90_[+2]_3 rpmJ 0.00032 90_[+2]_3 rplJ 0.00032 90_[+2]_3 cds-QOL35417.1 0.00032 83_[+2]_10 cds-QOL33328.1 0.00032 89_[+2]_4 rho 0.00032 83_[+2]_10 cds-QOL34994.1 0.00032 70_[+2]_23 cds-QOL35364.1 0.00032 18_[+2]_75 cds-BL8807_02335 0.00032 89_[+2]_4 cds-QOL34641.1 0.00032 89_[+2]_4 cds-QOL34528.1 0.00032 88_[+2]_5 cds-QOL34410.1 0.00032 87_[+2]_6 cds-QOL34175.1 0.00038 43_[+2]_50 cds-QOL34084.1 0.00038 42_[+2]_51 rplB 0.00038 84_[+2]_9 rplL 0.00038 88_[+2]_5 cds-QOL33343.1 0.00038 80_[+2]_13 cds-QOL35326.1 0.00038 8_[+2]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGARV width=7 seqs=50 cds-QOL34096.1 ( 90) AAGGAGC 1 cds-QOL34056.1 ( 90) AAGGAGC 1 cds-QOL33865.1 ( 66) AAGGAGC 1 cds-QOL33793.1 ( 35) AAGGAGA 1 nusB ( 85) AAGGAGA 1 cds-QOL33552.1 ( 90) AAGGAGC 1 cds-QOL33467.1 ( 62) AAGGAGC 1 rplQ ( 88) AAGGAGA 1 rplF ( 86) AAGGAGA 1 rplN ( 90) AAGGAGA 1 rpsQ ( 87) AAGGAGA 1 rplV ( 85) AAGGAGA 1 cds-QOL33350.1 ( 89) AAGGAGC 1 cds-QOL33298.1 ( 90) AAGGAGC 1 cds-QOL33295.1 ( 89) AAGGAGA 1 cds-QOL35171.1 ( 91) AAGGAGC 1 cds-QOL35029.1 ( 91) AAGGAGC 1 cds-QOL34989.1 ( 35) AAGGAGA 1 cds-QOL34910.1 ( 85) AAGGAGC 1 cds-QOL34896.1 ( 90) AAGGAGA 1 rpsP ( 88) AAGGAGA 1 cds-QOL34771.1 ( 89) AAGGAGC 1 cds-QOL34545.1 ( 90) AAGGAGC 1 lexA ( 73) AAGGAGC 1 cds-QOL34287.1 ( 90) AAGGAAC 1 cds-QOL35513.1 ( 88) AAGGAGG 1 cds-QOL34051.1 ( 75) AAGGAGG 1 cds-QOL33782.1 ( 87) AAGGAGG 1 cds-QOL33752.1 ( 66) AAGGAAC 1 tenA ( 89) AAGGAAA 1 fusA ( 90) AAGGAAA 1 cds-QOL33619.1 ( 90) AAGGAAC 1 cds-QOL33476.1 ( 91) AAGGAAC 1 rpmJ ( 91) AAGGAAA 1 rplJ ( 91) AAGGAAC 1 cds-QOL35417.1 ( 84) AAGGAAC 1 cds-QOL33328.1 ( 90) AAGGAGG 1 rho ( 84) AAGGAAA 1 cds-QOL34994.1 ( 71) AAGGAAA 1 cds-QOL35364.1 ( 19) AAGGAAC 1 cds-BL8807_02335 ( 90) AAGGAGG 1 cds-QOL34641.1 ( 90) AAGGAAC 1 cds-QOL34528.1 ( 89) AAGGAGG 1 cds-QOL34410.1 ( 88) AAGGAGG 1 cds-QOL34175.1 ( 44) AAGGAAG 1 cds-QOL34084.1 ( 43) AAGGAAG 1 rplB ( 85) AAGGAAG 1 rplL ( 89) AAGGAAG 1 cds-QOL33343.1 ( 81) AAGGAAG 1 cds-QOL35326.1 ( 9) AAGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 23500 bayes= 9.36438 E= 3.9e-006 210 -1229 -1229 -1229 210 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 -1229 187 -1229 210 -1229 -1229 -1229 70 -1229 118 -1229 46 58 -7 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 3.9e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.380000 0.000000 0.620000 0.000000 0.320000 0.420000 0.260000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGARV MEME-2 regular expression -------------------------------------------------------------------------------- AAGGA[GA][CAG] -------------------------------------------------------------------------------- Time 45.31 secs. ******************************************************************************** ******************************************************************************** MOTIF DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 width = 50 sites = 48 llr = 564 E-value = 3.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::3:43:34122:33:13113122133132156:13:122451351121 pos.-specific C 263455252335445353323:6145238145114238346324134245 probability G 23723123515326125415423613322624415632642315415633 matrix T 31111:42:21:2:13:23125:12123::3::1122:1:::3:21:112 bits 2.2 2.0 1.8 1.6 Relative 1.3 Entropy 1.1 (17.0 bits) 0.9 * * 0.7 ** * * * ** * * 0.4 ** * * * * * *** ** **** ***** * * 0.2 ***** ***** ** **** ***** ** ***** ************* 0.0 -------------------------------------------------- Multilevel ACGCCCTCGAGCCGCAGGCGGTCGCCGTCGCCAAGGGCGCCAAGGAGGCC consensus TGCAGAAGACCGACATCCTCCAGAAGAA ATGG C A CGGCTCACCCGG sequence G G C G C A T T CC C G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- rpsI 23 3.60e-11 CATCCGCACG TCGCCCAGAAGCCGCAGGCTTTCGAGATCGCCCAGGTCTCGCAGCAGGCC AAGTGAACCG mfd 5 1.14e-09 CCCG ACCAGCGCAAGCAGCTGCCGGAATTCATCGCCGACGGCGCGGACGCCGCC GAAGACATCA cds-QOL33434.1 5 1.52e-09 CAGC GCGGTATGGACATCACCGTGGTGACCTCCACCAAGGACGACAAGGAAGCT TACTCGCTGC rplP 3 1.52e-09 CA ACCGTCCCGCCGCCCAGCAGCAGGCCGGCGCCGAGGCCCCCAAGGCCGAG GCCGCCGCCG rplV 27 3.52e-09 CTCGGTGAGT TCGCCCCCACGAAGACCTTCAAGGGTCACGTGAAGGACGACAAGAAGTCC CGCCGCTAAA rpmC 19 4.04e-09 TCCGAGGAAG TCGCTCGCGAGGCCCTGCGCCGCGCCATCGACAAGCTCCCCATGAAGTGC CGTGTTATTG cds-QOL35239.1 22 4.04e-09 GGCCGGCACC TGGGGATCATGGCCCTGGCGTTCGCCCTCCGCAAGCACGGGCCGGGGGCG TTGGCCCCGC rplW 10 5.28e-09 ATACGTACG ACGTGGTCACCGCGCAGTACGTGGTCTTCACGAAGGAAGCCCTCGAGGCT TTCGTCGCCG cds-QOL34292.1 6 4.50e-08 CGACA ACGACTAGCAGCGGAAGTAGTACGACTACGACCAGTACGCGAGCGACGAG CGCGTCCGCT cds-QOL33881.1 39 6.40e-08 AACGCGCGTC CGGACAGCGAACTCATCGAACTGGACGCCACGCACGCCGGCCGGTACGCC TTCGACGAGG rplE 49 7.18e-08 CGTGACGGCA AGGTCAAGACCGTGCGCGTGCGCGTCGCCAAGAAGTCCGGAAAGGAGCTG GC cds-QOL33476.1 9 8.06e-08 GAAATTCG CCGCCGTCGTGCCGCGCGTGGGCATCGACGTGCGGGCCGGCGACCCGGTG ATCGACGTGC cds-QOL33342.1 9 8.06e-08 CGTCTCCA CCGCCGGCAAGCCGCTGGTGGACAAGAAGCCCGAGGTCAGGCAGGACACT CCGGTCGACC polA 29 1.13e-07 TCCATGGACC AGCGCATCCCGAAGAAGCGTCTCGCCCAGGCCATCATCGCCAAGTACGGC GATCCCAAGC rplR 17 1.27e-07 CGCAAGCTGC GCGCTCCCGAACCCTACAAGGGCAAGGGCGTCAAGTACGCCGACGAGCGT ATCCTGCGCA rplI 3 1.27e-07 GC AGGAGCAGCGTAAGATCTCGAAGGCGATCAAGAACGCCCGCGAGATGGCC CTGCTGCCGT cds-QOL35377.1 47 2.71e-07 CAGCATGGAA CGGCCCTGTCGCCGTTCCTTCTCGCGCACAGCATCGGCGCCGAGAGGAGG GATG rplC 37 3.72e-07 GATTCCCTGA TGCACATTGATCTGCCCGCGGACGTCAACATCGAGATCAAGCTGTAAGGG GAGGAGGAAC dnaE 34 4.12e-07 GACCTCGCGT ACGCGCTTGCGGTGGAGCTTGTGACTGCCAAGGCCTGCGCAGCGGAGCCC GTCCATAGCA cds-QOL35417.1 7 5.06e-07 GCGTGT ACGACTCCGTTCCGGAGCAGGCCTTCTCCGGCATCGGCGGCATCGAGGAT CTCGAGCGCA cds-QOL35352.1 18 5.06e-07 AGCGCGCTGA CGGACCTCAGGGAGCAGGAGTTCTCCGCCGTGCAAGGGCACGACACAGCC CCTCCACTAT cds-QOL34689.1 5 5.60e-07 ATCC GGCCGATGACGCTGCCCACGCTCGCCATGGCCGCGCTGGCGCTCTCCGAC GCGCGCTACC rpmD 34 6.19e-07 GGCATCGCCG AGGCCCGCAAGGCTCGCGAAGAGGCTCAGGCCAAGGCCGCCCAGGCTGAA AAGGATGGTG cds-QOL33341.1 12 1.35e-06 AACACCGTGG TCGCGCAGCTGCAGCACCTGCACAGGGTCGTGGCGGCCTGACCGGAACCA AAGACTTACT rpsG 13 1.79e-06 CGCTACCACA TCGTGCGTGGCGCGCTCGATACCCAGGGCGTCAAGGACCGCAAGCAGGGT CGTTCCCTGT rplB 1 2.16e-06 . TTTCCCAGAAGCGCGCGATCGTGACCGTCGCCGAGGGCCAGACCATCGAC ATCTTTGGTA rplO 10 3.39e-06 GCAAGATCG GCCAGACCGTGGTCCGCCCGGACACCCCGGCCAACCGTGGCCTGGTGAAC GTGGTTCGCC cds-QOL35464.1 10 4.81e-06 CTGGCATAC ACGGCAATGACGCGTCCTTATTGGCTCGCGTCGGCTGCGCCACCGCGCTG GCACATTTTC fusA 15 4.81e-06 AAGCGTCGCG AGGACACCCACAAGATGGCCGAAGCCAACAAGGCCTTCGCCCATTACCGC TGGTAATCAC cds-BL8807_06610 22 5.70e-06 TACGGCAACA TCCTCAAGCTGCGCCCGCCGCTGGTGTTCAGCGAATCCGACGTGGACTGG TTCATGGACG cds-QOL35366.1 30 5.70e-06 CACCCACGCA GCGCACATAACCGCAAGCTGCAGCCTAACGTAAAGTAGGCGATGAGCGAC AAGCAGCTGC rplS 2 7.34e-06 A GCCCGCCTGGGCACCCCTACTACGTCCGCATAGCGTGCCGAAGCGCGGCC CGCTGCGGGG cds-QOL34974.1 31 7.97e-06 TGCTGGAGCA ATCCGCTCGCTGCGCTGCGTCTCGGTGCCGCGAACGGGCCAGCCGTCCGC ACAGAACACA cds-QOL35292.1 34 8.66e-06 TGGCGCCCGC ACGCGCCTGCGCTGAGGGCGTGCGACATCGTACTTCCGTGCGTCGTGCCC AACTTTCCTC cds-QOL34058.1 7 9.39e-06 CCACCG CCGAGCAGGCCCGCGCCGACCTCGCCGCGCTGGGCGTCGCACTATAGGGT ATAAGTGGTC cds-QOL35016.1 2 9.39e-06 G GCGAGATGCAGCCGCCCTACTTGGCATTCGGAAGGCGCGCGGAATTCCCC TCCCGTCAAG cds-QOL33340.1 4 1.02e-05 ACG ATGCCGTGCAGAGCTCGATGATCGACTCGATGATCGACGGCATGAGCAAG AAGTGACAGT cds-QOL34565.1 44 1.02e-05 CCGCAACCCA TGCAACACGCGCACCAAGCGTTCCGCAAAGCCGAGGCGGGCGAGTAGCCT TGCATCT cds-QOL33782.1 27 1.10e-05 GCCGGCATCG GCGGCGGCGATACGCTGGTGTTCGTCATCGACATCATCTCCACCCGCTGA ATCCAAGCTT cds-QOL33298.1 32 1.10e-05 GCAAGGCGAT GCGGTCTTGCGCGCAGGTACGGAAGCGACGCGGCCCACCGCATGCCGGGC TGCACGGAAA nusG 4 1.10e-05 AGC AGTGCCCGTACCTGAAGCCAGACCCGTTCGAGCACGACACCCACAAGCCG ACTAGCTTAT rplD 6 1.20e-05 GGATG TTGAGAACGGTGTTATCGCCGTCAAGGGCGCCGTTCCCGGCCCCAAGGGC GGTATCGTTC cds-QOL34520.1 48 1.77e-05 CTTTCCTCCT ACCCCATCGTGGACCGGAGGATGTCGTCAACGAAGGACGGCGAAGGGAGA GCC rpsH 30 1.91e-05 CGACGCTGAA GGTCCGTGGCCCGGCTCTCATACGAGGGCGGGGCGGCGGAAACCACGGCG AGAAAGGGCG cds-QOL34287.1 28 2.40e-05 CCAAAACAGC ACGGGACGCGGCACACCGCGCACAAACCACGGAACGGGCCCCACACCGCC ATGGCACCAC nusB 27 2.40e-05 ATCTGACCCA CGCGCATCGCACGCCGCGAAAGCGGACGCGCGAACGACCACCGCACGGAC GACTACACAA cds-QOL33350.1 34 3.99e-05 CTCGTTATCA TCGCCAGTAATCGGCGCGTTCGCGCGCGGGCAAACCGACGAATCGGCGGA AGATTAAGGA rpsE 1 4.93e-05 . CCGCCGGCATCACCGAGGTCGTCTTCGACCGCGGTGGCAACAAGTACACC GGTCGCGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rpsI 3.6e-11 22_[+3]_28 mfd 1.1e-09 4_[+3]_46 cds-QOL33434.1 1.5e-09 4_[+3]_46 rplP 1.5e-09 2_[+3]_48 rplV 3.5e-09 26_[+3]_24 rpmC 4e-09 18_[+3]_32 cds-QOL35239.1 4e-09 21_[+3]_29 rplW 5.3e-09 9_[+3]_41 cds-QOL34292.1 4.5e-08 5_[+3]_45 cds-QOL33881.1 6.4e-08 38_[+3]_12 rplE 7.2e-08 48_[+3]_2 cds-QOL33476.1 8.1e-08 8_[+3]_42 cds-QOL33342.1 8.1e-08 8_[+3]_42 polA 1.1e-07 28_[+3]_22 rplR 1.3e-07 16_[+3]_34 rplI 1.3e-07 2_[+3]_48 cds-QOL35377.1 2.7e-07 46_[+3]_4 rplC 3.7e-07 36_[+3]_14 dnaE 4.1e-07 33_[+3]_17 cds-QOL35417.1 5.1e-07 6_[+3]_44 cds-QOL35352.1 5.1e-07 17_[+3]_33 cds-QOL34689.1 5.6e-07 4_[+3]_46 rpmD 6.2e-07 33_[+3]_17 cds-QOL33341.1 1.4e-06 11_[+3]_39 rpsG 1.8e-06 12_[+3]_38 rplB 2.2e-06 [+3]_50 rplO 3.4e-06 9_[+3]_41 cds-QOL35464.1 4.8e-06 9_[+3]_41 fusA 4.8e-06 14_[+3]_36 cds-BL8807_06610 5.7e-06 21_[+3]_29 cds-QOL35366.1 5.7e-06 29_[+3]_21 rplS 7.3e-06 1_[+3]_49 cds-QOL34974.1 8e-06 30_[+3]_20 cds-QOL35292.1 8.7e-06 33_[+3]_17 cds-QOL34058.1 9.4e-06 6_[+3]_44 cds-QOL35016.1 9.4e-06 1_[+3]_49 cds-QOL33340.1 1e-05 3_[+3]_47 cds-QOL34565.1 1e-05 43_[+3]_7 cds-QOL33782.1 1.1e-05 26_[+3]_24 cds-QOL33298.1 1.1e-05 31_[+3]_19 nusG 1.1e-05 3_[+3]_47 rplD 1.2e-05 5_[+3]_45 cds-QOL34520.1 1.8e-05 47_[+3]_3 rpsH 1.9e-05 29_[+3]_21 cds-QOL34287.1 2.4e-05 27_[+3]_23 nusB 2.4e-05 26_[+3]_24 cds-QOL33350.1 4e-05 33_[+3]_17 rpsE 4.9e-05 [+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS width=50 seqs=48 rpsI ( 23) TCGCCCAGAAGCCGCAGGCTTTCGAGATCGCCCAGGTCTCGCAGCAGGCC 1 mfd ( 5) ACCAGCGCAAGCAGCTGCCGGAATTCATCGCCGACGGCGCGGACGCCGCC 1 cds-QOL33434.1 ( 5) GCGGTATGGACATCACCGTGGTGACCTCCACCAAGGACGACAAGGAAGCT 1 rplP ( 3) ACCGTCCCGCCGCCCAGCAGCAGGCCGGCGCCGAGGCCCCCAAGGCCGAG 1 rplV ( 27) TCGCCCCCACGAAGACCTTCAAGGGTCACGTGAAGGACGACAAGAAGTCC 1 rpmC ( 19) TCGCTCGCGAGGCCCTGCGCCGCGCCATCGACAAGCTCCCCATGAAGTGC 1 cds-QOL35239.1 ( 22) TGGGGATCATGGCCCTGGCGTTCGCCCTCCGCAAGCACGGGCCGGGGGCG 1 rplW ( 10) ACGTGGTCACCGCGCAGTACGTGGTCTTCACGAAGGAAGCCCTCGAGGCT 1 cds-QOL34292.1 ( 6) ACGACTAGCAGCGGAAGTAGTACGACTACGACCAGTACGCGAGCGACGAG 1 cds-QOL33881.1 ( 39) CGGACAGCGAACTCATCGAACTGGACGCCACGCACGCCGGCCGGTACGCC 1 rplE ( 49) AGGTCAAGACCGTGCGCGTGCGCGTCGCCAAGAAGTCCGGAAAGGAGCTG 1 cds-QOL33476.1 ( 9) CCGCCGTCGTGCCGCGCGTGGGCATCGACGTGCGGGCCGGCGACCCGGTG 1 cds-QOL33342.1 ( 9) CCGCCGGCAAGCCGCTGGTGGACAAGAAGCCCGAGGTCAGGCAGGACACT 1 polA ( 29) AGCGCATCCCGAAGAAGCGTCTCGCCCAGGCCATCATCGCCAAGTACGGC 1 rplR ( 17) GCGCTCCCGAACCCTACAAGGGCAAGGGCGTCAAGTACGCCGACGAGCGT 1 rplI ( 3) AGGAGCAGCGTAAGATCTCGAAGGCGATCAAGAACGCCCGCGAGATGGCC 1 cds-QOL35377.1 ( 47) CGGCCCTGTCGCCGTTCCTTCTCGCGCACAGCATCGGCGCCGAGAGGAGG 1 rplC ( 37) TGCACATTGATCTGCCCGCGGACGTCAACATCGAGATCAAGCTGTAAGGG 1 dnaE ( 34) ACGCGCTTGCGGTGGAGCTTGTGACTGCCAAGGCCTGCGCAGCGGAGCCC 1 cds-QOL35417.1 ( 7) ACGACTCCGTTCCGGAGCAGGCCTTCTCCGGCATCGGCGGCATCGAGGAT 1 cds-QOL35352.1 ( 18) CGGACCTCAGGGAGCAGGAGTTCTCCGCCGTGCAAGGGCACGACACAGCC 1 cds-QOL34689.1 ( 5) GGCCGATGACGCTGCCCACGCTCGCCATGGCCGCGCTGGCGCTCTCCGAC 1 rpmD ( 34) AGGCCCGCAAGGCTCGCGAAGAGGCTCAGGCCAAGGCCGCCCAGGCTGAA 1 cds-QOL33341.1 ( 12) TCGCGCAGCTGCAGCACCTGCACAGGGTCGTGGCGGCCTGACCGGAACCA 1 rpsG ( 13) TCGTGCGTGGCGCGCTCGATACCCAGGGCGTCAAGGACCGCAAGCAGGGT 1 rplB ( 1) TTTCCCAGAAGCGCGCGATCGTGACCGTCGCCGAGGGCCAGACCATCGAC 1 rplO ( 10) GCCAGACCGTGGTCCGCCCGGACACCCCGGCCAACCGTGGCCTGGTGAAC 1 cds-QOL35464.1 ( 10) ACGGCAATGACGCGTCCTTATTGGCTCGCGTCGGCTGCGCCACCGCGCTG 1 fusA ( 15) AGGACACCCACAAGATGGCCGAAGCCAACAAGGCCTTCGCCCATTACCGC 1 cds-BL8807_06610 ( 22) TCCTCAAGCTGCGCCCGCCGCTGGTGTTCAGCGAATCCGACGTGGACTGG 1 cds-QOL35366.1 ( 30) GCGCACATAACCGCAAGCTGCAGCCTAACGTAAAGTAGGCGATGAGCGAC 1 rplS ( 2) GCCCGCCTGGGCACCCCTACTACGTCCGCATAGCGTGCCGAAGCGCGGCC 1 cds-QOL34974.1 ( 31) ATCCGCTCGCTGCGCTGCGTCTCGGTGCCGCGAACGGGCCAGCCGTCCGC 1 cds-QOL35292.1 ( 34) ACGCGCCTGCGCTGAGGGCGTGCGACATCGTACTTCCGTGCGTCGTGCCC 1 cds-QOL34058.1 ( 7) CCGAGCAGGCCCGCGCCGACCTCGCCGCGCTGGGCGTCGCACTATAGGGT 1 cds-QOL35016.1 ( 2) GCGAGATGCAGCCGCCCTACTTGGCATTCGGAAGGCGCGCGGAATTCCCC 1 cds-QOL33340.1 ( 4) ATGCCGTGCAGAGCTCGATGATCGACTCGATGATCGACGGCATGAGCAAG 1 cds-QOL34565.1 ( 44) TGCAACACGCGCACCAAGCGTTCCGCAAAGCCGAGGCGGGCGAGTAGCCT 1 cds-QOL33782.1 ( 27) GCGGCGGCGATACGCTGGTGTTCGTCATCGACATCATCTCCACCCGCTGA 1 cds-QOL33298.1 ( 32) GCGGTCTTGCGCGCAGGTACGGAAGCGACGCGGCCCACCGCATGCCGGGC 1 nusG ( 4) AGTGCCCGTACCTGAAGCCAGACCCGTTCGAGCACGACACCCACAAGCCG 1 rplD ( 6) TTGAGAACGGTGTTATCGCCGTCAAGGGCGCCGTTCCCGGCCCCAAGGGC 1 cds-QOL34520.1 ( 48) ACCCCATCGTGGACCGGAGGATGTCGTCAACGAAGGACGGCGAAGGGAGA 1 rpsH ( 30) GGTCCGTGGCCCGGCTCTCATACGAGGGCGGGGCGGCGGAAACCACGGCG 1 cds-QOL34287.1 ( 28) ACGGGACGCGGCACACCGCGCACAAACCACGGAACGGGCCCCACACCGCC 1 nusB ( 27) CGCGCATCGCACGCCGCGAAAGCGGACGCGCGAACGACCACCGCACGGAC 1 cds-QOL33350.1 ( 34) TCGCCAGTAATCGGCGCGTTCGCGCGCGGGCAAACCGACGAATCGGCGGA 1 rpsE ( 1) CCGCCGGCATCACCGAGGTCGTCTTCGACCGCGGTGGCAACAAGTACACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 12750 bayes= 9.15025 E= 3.6e-008 68 -75 -39 23 -1223 111 19 -135 -1223 -17 133 -177 22 64 -39 -135 -248 89 28 -103 60 71 -91 -235 10 -43 -55 74 -1223 77 28 -18 32 -58 81 -235 76 16 -113 -35 -190 -17 99 -54 -48 95 9 -1223 -3 34 -39 -3 -1223 50 104 -235 22 95 -139 -135 32 -17 -55 35 -348 77 87 -1223 -116 -5 68 -18 32 16 -171 56 -90 -29 87 -54 -90 6 37 11 51 -275 -71 111 -190 120 9 -1223 -3 -175 109 -103 -3 64 -113 -3 -190 95 -1 -77 10 -29 28 -18 22 -17 -55 46 -190 146 -71 -1223 22 -143 119 -1223 -48 50 -71 35 -116 83 53 -1223 104 -94 45 -1223 137 -94 -139 -54 -248 50 87 -177 -190 -58 104 -18 22 -17 9 -18 -248 146 -71 -335 -148 -17 109 -135 -32 64 45 -1223 -48 116 -39 -1223 76 25 -1 -1223 97 -58 -171 35 -190 57 87 -335 22 -143 68 -18 104 -17 -91 -77 -148 42 93 -335 -90 -29 104 -135 -16 57 19 -177 -116 77 -13 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 48 E= 3.6e-008 0.375000 0.166667 0.208333 0.250000 0.000000 0.604167 0.312500 0.083333 0.000000 0.250000 0.687500 0.062500 0.270833 0.437500 0.208333 0.083333 0.041667 0.520833 0.333333 0.104167 0.354167 0.458333 0.145833 0.041667 0.250000 0.208333 0.187500 0.354167 0.000000 0.479167 0.333333 0.187500 0.291667 0.187500 0.479167 0.041667 0.395833 0.312500 0.125000 0.166667 0.062500 0.250000 0.541667 0.145833 0.166667 0.541667 0.291667 0.000000 0.229167 0.354167 0.208333 0.208333 0.000000 0.395833 0.562500 0.041667 0.270833 0.541667 0.104167 0.083333 0.291667 0.250000 0.187500 0.270833 0.020833 0.479167 0.500000 0.000000 0.104167 0.270833 0.437500 0.187500 0.291667 0.312500 0.083333 0.312500 0.125000 0.229167 0.500000 0.145833 0.125000 0.291667 0.354167 0.229167 0.333333 0.041667 0.166667 0.458333 0.062500 0.645833 0.291667 0.000000 0.229167 0.083333 0.583333 0.104167 0.229167 0.437500 0.125000 0.208333 0.062500 0.541667 0.270833 0.125000 0.250000 0.229167 0.333333 0.187500 0.270833 0.250000 0.187500 0.291667 0.062500 0.770833 0.166667 0.000000 0.270833 0.104167 0.625000 0.000000 0.166667 0.395833 0.166667 0.270833 0.104167 0.500000 0.395833 0.000000 0.479167 0.145833 0.375000 0.000000 0.604167 0.145833 0.104167 0.145833 0.041667 0.395833 0.500000 0.062500 0.062500 0.187500 0.562500 0.187500 0.270833 0.250000 0.291667 0.187500 0.041667 0.770833 0.166667 0.020833 0.083333 0.250000 0.583333 0.083333 0.187500 0.437500 0.375000 0.000000 0.166667 0.625000 0.208333 0.000000 0.395833 0.333333 0.270833 0.000000 0.458333 0.187500 0.083333 0.270833 0.062500 0.416667 0.500000 0.020833 0.270833 0.104167 0.437500 0.187500 0.479167 0.250000 0.145833 0.125000 0.083333 0.375000 0.520833 0.020833 0.125000 0.229167 0.562500 0.083333 0.208333 0.416667 0.312500 0.062500 0.104167 0.479167 0.250000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSGMSMNSRMGSNSMNSSHGBWCGMSNNCGYSRASGNCGSCVWSRMSGVS MEME-3 regular expression -------------------------------------------------------------------------------- [ATG][CG][GC][CAG][CG][CA][TAC][CG][GA][AC][GC][CG][CAGT][GC][CA][ATC][GC][GC][CTA][GC][GCT][TA][CG][GA][CAT][CG][GAC][TAC]C[GA][CT][CG][AG]A[GC]G[GAC]C[GC][CG][CG][ACG][AT][GC][GA][AC][GC][GC][CGA][CG] -------------------------------------------------------------------------------- Time 66.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- scpB 1.05e-15 38_[+1(3.77e-20)]_12 rplT 3.87e-14 6_[+1(1.36e-18)]_44 rpmI 2.31e-15 41_[+1(6.91e-20)]_9 cds-QOL34389.1 9.56e-01 100 cds-QOL35303.1 5.29e-01 100 cds-QOL34402.1 5.43e-01 100 cds-QOL34409.1 1.20e-01 100 cds-QOL34410.1 1.85e-01 100 nrdR 2.46e-01 100 lexA 1.79e-02 100 dnaE 1.90e-04 33_[+3(4.12e-07)]_17 cds-QOL34470.1 1.11e-01 100 cds-QOL34504.1 6.03e-01 100 cds-QOL34514.1 2.47e-01 100 cds-QOL34518.1 7.24e-01 100 cds-QOL34520.1 2.42e-03 47_[+3(1.77e-05)]_3 cds-QOL34525.1 2.89e-01 100 cds-QOL34528.1 2.41e-02 100 cds-QOL34530.1 8.87e-01 100 cds-QOL34545.1 1.42e-01 100 cds-QOL34546.1 8.86e-01 100 cds-QOL34549.1 3.52e-01 100 cds-QOL34565.1 1.58e-02 43_[+3(1.02e-05)]_7 cds-QOL34572.1 7.55e-01 100 cds-QOL34583.1 7.08e-01 100 rpmE 6.82e-01 100 cds-QOL34610.1 9.52e-01 100 cds-QOL34611.1 2.53e-01 100 cds-QOL35326.1 4.87e-02 100 cds-QOL34629.1 9.90e-01 100 cds-QOL34641.1 3.08e-01 100 cds-QOL34667.1 4.80e-01 100 cds-QOL35332.1 4.13e-01 100 cds-QOL34674.1 6.27e-01 100 cds-QOL34676.1 1.00e+00 100 cds-QOL34689.1 6.49e-04 4_[+3(5.60e-07)]_46 cds-QOL34700.1 2.92e-01 100 cds-QOL34735.1 7.71e-01 100 cds-QOL34746.1 5.20e-01 100 cds-QOL35345.1 9.47e-01 100 rplS 5.79e-03 1_[+3(7.34e-06)]_49 rpmF 8.76e-01 100 cds-BL8807_02335 1.25e-01 100 cds-QOL34771.1 6.11e-02 100 rpsP 4.23e-02 100 cds-QOL35352.1 4.29e-04 17_[+3(5.06e-07)]_33 rpsO 5.11e-01 100 rplA 4.22e-02 100 rplK 4.22e-01 100 cds-QOL34818.1 3.36e-01 100 nusG 3.60e-03 3_[+3(1.10e-05)]_47 cds-QOL34826.1 3.41e-01 100 rpmA 5.70e-01 100 rplU 8.15e-01 100 cds-QOL34846.1 3.96e-01 100 cds-QOL35361.1 4.21e-01 100 cds-QOL34872.1 3.71e-01 100 cds-QOL34884.1 5.44e-01 100 cds-QOL35364.1 2.02e-02 100 cds-QOL34895.1 7.27e-01 100 cds-QOL34896.1 1.59e-02 100 cds-QOL34910.1 1.29e-02 100 cds-QOL35366.1 1.52e-03 29_[+3(5.70e-06)]_21 cds-QOL34922.1 9.86e-01 100 cds-QOL34944.1 1.00e+00 100 cds-QOL34949.1 9.71e-01 100 cds-QOL35373.1 6.67e-01 100 cds-QOL34958.1 3.67e-01 100 cds-QOL34962.1 2.49e-01 100 cds-QOL35377.1 1.59e-04 46_[+3(2.71e-07)]_4 cds-QOL34974.1 5.05e-03 30_[+3(7.97e-06)]_20 cds-QOL34980.1 1.56e-01 100 cds-QOL34989.1 1.08e-01 100 cds-QOL34994.1 4.61e-02 100 cds-QOL35016.1 1.67e-04 1_[+3(9.39e-06)]_49 cds-QOL35022.1 6.29e-01 100 cds-QOL35029.1 2.07e-02 100 cds-QOL35380.1 6.28e-01 100 cds-QOL35047.1 5.20e-01 100 dnaN 6.79e-01 100 cds-QOL35083.1 2.44e-01 100 cds-QOL35105.1 4.37e-01 100 cds-QOL35106.1 3.68e-01 100 cds-QOL35119.1 1.47e-01 100 cds-QOL35123.1 9.84e-01 100 cds-QOL35126.1 8.17e-01 100 cds-QOL35150.1 3.11e-01 100 cds-QOL35152.1 8.63e-01 100 cds-QOL35165.1 5.04e-02 100 cds-QOL35166.1 9.70e-01 100 cds-QOL35171.1 1.85e-01 100 cds-QOL35176.1 5.93e-01 100 cds-QOL35239.1 1.51e-07 21_[+3(4.04e-09)]_29 cds-QOL35244.1 7.80e-01 100 cds-QOL35253.1 2.64e-01 100 cds-QOL35263.1 6.42e-02 100 cds-QOL35267.1 1.94e-01 100 cds-QOL35292.1 2.92e-03 33_[+3(8.66e-06)]_17 rpsF 7.26e-02 100 cds-QOL33295.1 7.97e-02 100 rplI 1.28e-04 2_[+3(1.27e-07)]_48 cds-QOL33298.1 2.98e-04 31_[+3(1.10e-05)]_19 cds-QOL33310.1 6.67e-01 100 rho 9.54e-02 100 cds-QOL33314.1 5.02e-01 100 cds-QOL33318.1 2.92e-01 100 cds-QOL33328.1 1.40e-01 100 cds-QOL33331.1 8.07e-01 100 atpB 8.57e-01 100 atpE 3.69e-01 100 cds-QOL33339.1 4.17e-02 100 cds-QOL33340.1 6.36e-03 3_[+3(1.02e-05)]_47 cds-QOL33341.1 2.49e-05 11_[+3(1.35e-06)]_39 cds-QOL33342.1 6.98e-06 8_[+3(8.06e-08)]_42 cds-QOL33343.1 3.06e-02 100 cds-QOL35417.1 3.43e-05 6_[+3(5.06e-07)]_44 cds-QOL33350.1 1.24e-03 33_[+3(3.99e-05)]_17 cds-QOL33359.1 9.19e-01 100 cds-QOL33362.1 8.68e-01 100 cds-QOL35426.1 9.55e-01 100 cds-QOL35427.1 7.32e-01 100 rplJ 6.61e-03 100 rplL 2.59e-01 100 cds-QOL35428.1 5.05e-01 100 rpmG 9.87e-01 100 dinB 3.38e-01 100 rplM 3.86e-01 100 rpsI 1.17e-08 22_[+3(3.60e-11)]_28 cds-QOL33418.1 4.91e-01 100 rpsJ 1.36e-01 100 rplC 2.28e-04 36_[+3(3.72e-07)]_14 rplD 2.90e-03 5_[+3(1.20e-05)]_45 rplW 2.56e-07 9_[+3(5.28e-09)]_41 rplB 2.50e-04 [+3(2.16e-06)]_50 rpsS 2.43e-01 100 rplV 4.34e-07 26_[+3(3.52e-09)]_24 rpsC 1.06e-02 100 rplP 5.04e-07 2_[+3(1.52e-09)]_48 rpmC 3.90e-07 18_[+3(4.04e-09)]_32 rpsQ 1.50e-02 100 rplN 2.37e-02 100 rplX 5.25e-01 100 rplE 5.14e-06 48_[+3(7.18e-08)]_2 cds-QOL33434.1 7.43e-08 4_[+3(1.52e-09)]_46 rpsH 2.30e-02 29_[+3(1.91e-05)]_21 rplF 9.21e-03 100 rplR 1.12e-04 16_[+3(1.27e-07)]_34 rpsE 8.02e-03 [+3(4.93e-05)]_50 rpmD 3.26e-04 33_[+3(6.19e-07)]_17 rplO 3.03e-03 9_[+3(3.39e-06)]_41 infA 6.95e-02 100 rpmJ 8.93e-03 100 rpsM 2.49e-02 100 rpsK 7.77e-01 100 cds-QOL33447.1 2.65e-01 100 rplQ 3.25e-02 100 nusA 6.25e-01 100 infB 3.96e-01 100 cds-QOL33467.1 4.87e-02 100 cds-QOL33476.1 3.08e-07 8_[+3(8.06e-08)]_42 cds-BL8807_06610 7.77e-05 21_[+3(5.70e-06)]_29 cds-QOL33490.1 6.39e-01 100 cds-QOL33509.1 4.67e-01 100 cds-QOL33524.1 4.38e-02 100 cds-QOL35438.1 6.77e-01 100 cds-QOL33538.1 4.16e-01 100 cds-QOL33544.1 4.26e-01 100 cds-QOL33552.1 1.75e-01 100 cds-QOL35441.1 2.05e-01 100 cds-QOL33560.1 8.16e-01 100 cds-QOL33564.1 9.43e-01 100 cds-QOL33570.1 5.58e-01 100 cds-QOL33577.1 8.22e-01 100 cds-QOL33587.1 8.68e-01 100 cds-QOL35447.1 2.66e-01 100 cds-QOL33619.1 9.79e-02 100 cds-QOL33623.1 3.16e-01 100 rpsG 1.57e-04 12_[+3(1.79e-06)]_38 fusA 4.30e-04 14_[+3(4.81e-06)]_36 tuf 3.04e-01 100 cds-QOL33627.1 8.69e-01 100 efp 1.53e-01 100 nusB 9.83e-04 26_[+3(2.40e-05)]_24 cds-QOL33638.1 4.67e-01 100 cds-QOL35455.1 7.23e-01 100 cds-QOL33737.1 4.29e-01 100 tenA 4.21e-02 100 mfd 7.88e-07 4_[+3(1.14e-09)]_46 cds-QOL33752.1 1.09e-01 100 cds-BL8807_08200 9.98e-01 100 cds-QOL33764.1 4.19e-01 100 cds-QOL33772.1 9.05e-01 100 cds-QOL33778.1 9.99e-01 100 cds-QOL33782.1 2.26e-04 26_[+3(1.10e-05)]_24 cds-QOL35464.1 1.20e-03 9_[+3(4.81e-06)]_41 cds-QOL35465.1 8.31e-01 100 cds-QOL33793.1 8.36e-02 100 rpsA 8.86e-01 100 cds-QOL33808.1 9.81e-01 100 polA 4.64e-05 28_[+3(1.13e-07)]_22 cds-QOL33865.1 1.92e-03 100 cds-QOL33881.1 6.43e-05 38_[+3(6.40e-08)]_12 cds-QOL35477.1 8.12e-01 100 rpsB 3.42e-01 100 cds-QOL33947.1 4.66e-01 100 cds-QOL33948.1 8.61e-01 100 cds-QOL33950.1 7.67e-01 100 cds-QOL33984.1 9.59e-01 100 hrcA 3.60e-01 100 cds-QOL35496.1 9.18e-01 100 cds-QOL34048.1 9.39e-01 100 cds-QOL34051.1 2.00e-01 100 cds-QOL34056.1 8.51e-02 100 cds-QOL34058.1 6.79e-04 6_[+3(9.39e-06)]_44 rpsT 2.96e-01 100 cds-QOL34084.1 1.30e-01 100 cds-QOL34091.1 1.79e-01 100 cds-QOL34096.1 1.87e-01 100 rpsD 2.70e-01 100 cds-QOL34136.1 8.81e-01 100 cds-QOL35507.1 9.63e-01 100 cds-QOL34153.1 6.07e-01 100 cds-QOL34156.1 1.49e-01 100 cds-QOL35513.1 2.15e-01 100 cds-QOL34168.1 1.00e+00 100 cds-QOL34175.1 2.61e-01 100 ychF 3.01e-01 100 cds-QOL35525.1 4.07e-01 100 cds-QOL34236.1 1.08e-11 17_[+1(3.05e-15)]_33 cds-QOL35527.1 3.97e-01 100 cds-QOL34245.1 1.44e-01 100 cds-QOL34251.1 9.54e-01 100 cds-QOL34252.1 8.11e-01 100 cds-QOL34258.1 7.18e-01 100 cds-QOL34260.1 5.98e-01 100 cds-QOL34277.1 3.49e-01 100 cds-QOL34287.1 1.63e-03 27_[+3(2.40e-05)]_23 cds-QOL34292.1 8.91e-06 5_[+3(4.50e-08)]_45 cds-QOL34296.1 9.98e-01 100 cds-QOL34307.1 8.07e-02 100 cds-QOL34308.1 1.70e-01 100 cds-QOL34311.1 6.40e-01 100 cds-QOL34319.1 9.16e-01 100 cds-QOL34329.1 8.74e-01 100 cds-QOL34339.1 6.08e-01 100 scpB_2 1.05e-15 38_[+1(3.77e-20)]_12 rplT_2 3.87e-14 6_[+1(1.36e-18)]_44 rpmI_2 2.31e-15 41_[+1(6.91e-20)]_9 cds-QOL34374.1 9.56e-01 100 cds-BL8807_11880 9.24e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************