RID: 7BW9TYR8016 Job Title:POL_FIVT2 P31822 Pol polyprotein (Protease) Program: BLASTP Query: POL_FIVT2 P31822 Pol polyprotein (Protease) (3.4.23.-) (Retropepsin) (Reverse transcriptase/ribonuclease H) (RT) (2.7.7.49) (3.1.26.13) (Exoribonuclease H) (3.1.13.2) (Deoxyuridine 5'-triphosphate nucleotidohydrolase) (dUTPase) (3.6.1.23) (Integrase) (IN) (2.7.7.- {ECO:0000250|UniProtKB:P04585}) (3.1.-.- {ECO:0000250|UniProtKB:P04585}) ID: lcl|Query_91298(amino acid) Length: 281 Database: nr All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 591 591 100% 0.0 100.00 1124 P31822.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 582 582 100% 0.0 98.22 1123 QRZ21064.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 580 580 100% 0.0 97.86 1123 QRZ21029.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 580 580 100% 0.0 97.86 1123 QWY12945.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 580 580 100% 0.0 98.22 1123 QRZ21035.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 579 579 100% 0.0 97.86 1123 QRZ21058.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 579 579 100% 0.0 97.86 1123 QWY12963.1 polymerase [Feline immunodeficiency virus] Feline immun... NA 11673 578 578 100% 0.0 97.51 1123 AAB09310.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 578 578 100% 0.0 97.51 1123 QWY12951.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 96.80 1123 QRZ21141.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 97.15 1123 QRZ21052.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 97.15 1123 QRZ21081.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 97.15 1123 QRZ21068.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 97.15 1123 QRZ21040.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 577 577 100% 0.0 96.80 1123 QRZ21105.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 576 576 100% 0.0 97.15 1123 QRZ21093.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 576 576 100% 0.0 96.80 1123 QRZ21046.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 96.80 1123 QRZ21099.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 96.80 1123 QRZ21075.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 97.15 1123 QRZ21005.1 pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 97.15 1123 ASU11158.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 96.80 1123 QRZ21153.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 575 575 100% 0.0 97.15 1123 QRZ20987.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 572 572 100% 0.0 96.44 1123 QRZ21111.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 572 572 100% 0.0 96.44 1123 QRZ21087.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 562 562 100% 0.0 94.31 1086 ABD16378.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 555 555 100% 0.0 92.17 1123 QRZ21129.1 pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 539 539 100% 0.0 89.68 1124 AAT12494.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 534 534 100% 2e-180 86.48 996 AWA45280.1 pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 533 533 100% 3e-180 87.19 996 NP_040973.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11675 533 533 100% 5e-179 87.19 1124 P19028.1 POL [Feline immunodeficiency virus] Feline immun... NA 11673 533 533 100% 9e-179 87.54 1124 CAA40318.1 pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 532 532 100% 2e-178 88.61 1130 AAM13444.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 532 532 100% 2e-178 87.19 1124 P16088.1 pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 532 532 100% 3e-178 87.19 1124 QKI31773.1 polymerase [Feline immunodeficiency virus] Feline immun... NA 11673 457 457 100% 1e-150 72.95 996 ACX54438.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 410 410 98% 2e-131 71.33 1148 ABX25835.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 409 409 98% 1e-130 71.68 1148 ABX25830.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 405 405 98% 2e-129 70.97 1150 AAU20798.1 Pol polyprotein [Feline immunodeficiency virus] Feline immun... NA 11673 405 405 98% 3e-129 70.97 1150 AAB49923.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 345 345 99% 1e-106 58.80 1145 AHZ63422.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 342 342 99% 1e-105 59.51 1153 ABO69483.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 2e-105 58.10 1145 QIG37902.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 2e-105 58.10 1145 QIG37897.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 3e-105 58.10 1145 QIG37981.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 3e-105 58.10 1145 QIG37907.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 3e-105 58.10 1145 QIG37822.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 3e-105 58.10 1145 QIG37912.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 3e-105 58.10 1135 QIG37777.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 3e-105 58.10 1145 QIG37971.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 342 342 99% 3e-105 58.10 1157 QIG37951.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 3e-105 58.10 1144 QIG37882.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 3e-105 58.10 1145 QIG37837.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 4e-105 58.45 1145 QIG37892.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 4e-105 58.10 1145 QIG37877.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 4e-105 58.45 1145 QIG37832.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 4e-105 58.45 1141 QIG37961.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 341 341 97% 4e-105 59.64 1135 ABC41651.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 5e-105 58.45 1143 QIG37926.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 5e-105 58.45 1142 QIG37817.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 5e-105 58.10 1145 QIG37767.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 341 341 97% 5e-105 59.64 1153 ABO69489.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 341 341 99% 5e-105 58.45 1148 QIG37867.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 5e-105 58.10 1135 QIG37772.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 340 340 97% 5e-105 59.64 1135 ABC41652.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 341 341 97% 6e-105 59.64 1153 ABO69477.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 6e-105 58.10 1145 QIG37807.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 7e-105 58.10 1148 QIG37872.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 7e-105 58.10 1145 QIG37936.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 8e-105 58.10 1146 QIG37976.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 9e-105 58.10 1145 QIG38001.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 9e-105 58.10 1146 QIG37931.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 9e-105 58.10 1133 QIG37753.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 9e-105 58.10 1145 QIG37946.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 9e-105 58.10 1145 QIG37996.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1137 QIG37862.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1145 QIG37792.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1150 QIG37802.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1145 QIG37941.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1145 QIG37827.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1146 QIG37787.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1145 QIG37857.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1154 QIG37842.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1147 QIG37852.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 340 340 99% 1e-104 58.10 1149 QIG37847.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 339 339 99% 2e-104 57.75 1127 QIG37762.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 339 339 99% 2e-104 57.75 1141 QIG37966.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 339 339 99% 3e-104 57.75 1145 QIG37921.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 339 339 99% 3e-104 57.75 1145 QIG37991.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 338 338 99% 3e-104 58.10 1145 QIG37744.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 338 338 99% 4e-104 57.75 1145 QIG37812.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 337 337 99% 1e-103 57.39 1146 QIG37887.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 337 337 99% 1e-103 58.10 1153 ABO69495.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 332 332 96% 6e-102 59.93 1145 AHZ63392.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 328 328 99% 1e-100 56.69 1131 QIG37739.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 327 327 99% 6e-100 57.75 1145 QIG37797.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 324 324 97% 6e-99 58.21 1145 QFR04893.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 1e-98 57.86 1145 QFR04905.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 1e-98 57.86 1135 ABC41653.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 1e-98 57.86 1145 ABO69501.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 1e-98 57.86 1135 ABC41654.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 2e-98 57.86 1145 QFR04888.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 2e-98 57.86 1145 QFR04879.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 2e-98 57.86 1145 AHZ63397.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 323 323 97% 2e-98 57.86 1145 ABO69507.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 319 319 97% 7e-97 57.14 1142 AHZ63347.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 319 319 97% 7e-97 57.14 1142 AHZ63362.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 99% 1e-96 57.39 1146 ABO69447.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 99% 1e-96 57.04 1146 ABO69453.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 99% 1e-96 57.39 1146 ABO69442.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 97% 1e-96 56.79 1142 AHZ63432.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 99% 2e-96 56.69 1146 QFR04897.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 318 318 97% 2e-96 57.50 1136 ABC41649.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 97% 3e-96 57.86 1136 ABC41647.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 97% 3e-96 57.86 1136 ABC41648.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 99% 5e-96 56.34 1146 QFR04916.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 99% 5e-96 55.99 1146 QFR04904.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 99% 5e-96 56.34 1146 AHZ63402.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 317 317 99% 6e-96 55.99 1146 QFR04917.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 316 316 99% 6e-96 56.34 1146 QZU26781.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 316 316 99% 7e-96 55.99 1146 QFR04915.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 316 316 99% 7e-96 55.99 1146 QFR04912.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 316 316 99% 1e-95 56.34 1142 AHZ63357.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 316 316 99% 1e-95 55.99 1146 QFR04883.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 1e-95 56.34 1142 AHZ63377.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 1e-95 56.34 1142 AHZ63382.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 1e-95 56.34 1142 AHZ63342.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 1e-95 55.63 1146 AHZ63412.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 1e-95 56.34 1142 AHZ63367.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 315 315 99% 2e-95 55.99 1146 QZU26779.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 315 315 99% 2e-95 55.99 1146 QZU26783.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 2e-95 55.99 1142 AHZ63372.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 2e-95 55.99 1146 QFR04891.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 315 315 99% 2e-95 55.99 1146 QZU26782.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 2e-95 57.04 1146 ABO69513.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 2e-95 55.63 1146 QFR04896.1 pol polyprotein [Puma lentivirus 14] Puma lentivi... NA 32615 314 314 99% 3e-95 56.23 1086 YP_009507791.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 315 315 99% 3e-95 55.63 1146 QZU26780.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.99 1142 AHZ63352.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04882.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 AHZ63387.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04894.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04881.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04895.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04907.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 315 315 99% 3e-95 55.63 1146 QZU26784.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04872.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 315 315 99% 3e-95 55.63 1146 QFR04906.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 QFR04898.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.99 1146 QFR04910.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 QFR04911.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 QFR04874.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 QFR04892.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 QFR04902.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 3e-95 55.63 1146 AHZ63427.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 4e-95 55.63 1146 QFR04876.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 4e-95 55.63 1146 AHZ63407.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 4e-95 55.63 1146 QFR04901.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 97% 4e-95 57.50 1136 ABC41655.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 4e-95 55.63 1146 QFR04900.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 5e-95 55.63 1146 AHZ63437.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 314 314 99% 5e-95 55.63 1146 QFR04887.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 313 313 99% 9e-95 55.28 1146 AHZ63417.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 313 313 99% 9e-95 55.28 1146 QFR04913.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 313 313 99% 1e-94 55.28 1146 QFR04880.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 313 313 99% 1e-94 55.28 1146 QFR04908.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 313 313 99% 1e-94 55.28 1146 QFR04877.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 312 312 99% 3e-94 56.69 1146 ABO69459.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 311 311 97% 4e-94 57.14 1136 ABC41650.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 311 311 99% 4e-94 54.93 1146 ABO69471.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 311 311 96% 4e-94 55.96 1145 ABB29307.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 311 311 96% 4e-94 55.96 1135 ABC41656.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 309 309 97% 2e-93 55.71 1143 QFR04875.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 309 309 99% 2e-93 55.28 1146 QFR04886.1 pol [Feline immunodeficiency virus] Feline immun... NA 11673 309 309 99% 4e-93 54.93 1146 ABO69465.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 308 308 96% 5e-93 55.23 1137 QIG37736.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 305 305 99% 7e-92 54.23 1146 QFR04878.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 301 301 92% 2e-90 54.96 1135 AHZ63292.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 301 301 92% 2e-90 55.34 1135 AHZ63284.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 301 301 92% 2e-90 54.96 1135 AHZ63296.1 Crystal Structure of Catalytic Core domain of FIV Integrase... Feline immun... NA 11674 275 275 53% 3e-90 84.56 151 4PA1_A pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 300 300 92% 4e-90 54.58 1135 AHZ63304.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 300 300 92% 5e-90 54.58 1135 AHZ63288.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 300 300 92% 7e-90 54.58 1135 AHZ63300.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 300 300 92% 9e-90 54.20 1135 AHZ63280.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 291 291 90% 2e-89 53.12 735 AHZ63314.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 296 296 90% 2e-88 55.08 1140 AHZ63321.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 295 295 90% 7e-88 54.69 1140 AHZ63264.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 295 295 90% 7e-88 54.69 1140 AHZ63252.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 293 293 99% 2e-87 53.52 1137 QIG37956.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 293 293 90% 2e-87 54.30 1140 AHZ63276.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 292 292 90% 5e-87 54.69 1139 AHZ63329.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 292 292 90% 6e-87 53.52 1140 AHZ63232.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 291 291 90% 1e-86 53.91 1140 AHZ63256.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 290 290 92% 2e-86 53.44 1140 AHZ63260.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 290 290 90% 2e-86 53.52 1140 AHZ63248.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 290 290 90% 2e-86 53.91 1140 AHZ63308.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 290 290 92% 3e-86 53.82 1139 AHZ63268.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 290 290 92% 3e-86 53.82 1139 AHZ63272.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 289 289 92% 6e-86 52.29 1140 AHZ63325.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 289 289 90% 7e-86 52.73 1140 AHZ63236.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 289 289 90% 1e-85 52.73 1140 AHZ63228.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 288 288 81% 3e-85 60.87 1143 QIG37731.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 287 287 90% 3e-85 52.73 1140 AHZ63240.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 287 287 92% 5e-85 52.67 1139 AHZ63332.1 pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 286 286 90% 5e-85 51.95 1140 AHZ63244.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 284 284 99% 4e-84 52.11 1127 QZU26778.1 pol protein [Puma lentivirus] Puma lentivirus NA 12804 266 266 99% 2e-78 48.94 940 QIG37758.1 The 1.1 Angstrom Structure of Catalytic Core Domain of FIV... Feline immun... NA 11674 238 238 45% 8e-76 85.16 132 4MQ3_A pol protein [Feline immunodeficiency virus] Feline immun... NA 11673 234 234 43% 5e-73 84.30 238 UVJ47966.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 229 229 94% 3e-64 43.66 1017 AAR02377.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 214 214 93% 3e-64 41.67 293 AHI42059.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 216 216 96% 6e-64 40.22 380 ACR04339.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 216 216 96% 6e-64 40.59 380 ACR04048.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 215 215 93% 9e-64 41.29 380 ACR06629.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 213 213 93% 9e-64 40.91 293 ADF42968.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 212 212 93% 1e-63 41.29 293 QGV16562.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 212 212 93% 1e-63 41.09 288 AAL98939.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 215 215 93% 1e-63 40.91 380 ACR22256.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 226 226 94% 2e-63 39.33 992 AHB61190.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 212 212 93% 2e-63 40.91 293 AHI42099.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 212 212 98% 2e-63 39.43 293 AHI42077.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 93% 3e-63 40.91 293 AHI42078.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 93% 3e-63 40.53 293 AHI42117.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 93% 3e-63 40.15 293 ADF42957.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 96% 3e-63 39.85 380 ACR21853.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 93% 4e-63 40.91 290 ASY08072.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-63 42.05 293 AZR68491.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 93% 4e-63 39.77 293 QOQ51513.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 211 211 96% 5e-63 39.11 293 AHI42097.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 210 210 93% 5e-63 41.45 288 AAL98943.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 213 213 96% 6e-63 39.85 380 ACR22212.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 210 210 93% 8e-63 42.05 288 AAL98948.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 210 210 93% 8e-63 41.04 293 AEI83208.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 210 210 93% 8e-63 40.91 293 AUY61925.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 213 213 96% 8e-63 39.85 380 ACR06734.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 213 213 96% 9e-63 40.22 380 ACR21134.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 213 213 96% 9e-63 40.22 380 ACR21141.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 96% 9e-63 39.48 271 AHK12763.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-62 41.67 293 AZR68502.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-62 41.67 293 AZR68482.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 210 210 93% 1e-62 40.53 293 ACO81759.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 39.39 271 AHK12761.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 210 210 93% 1e-62 40.15 293 AHI42071.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 40.53 293 ADF42966.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 40.53 292 ACO81760.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 40.22 380 ACR06682.1 integrase [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 209 209 93% 1e-62 41.67 293 AHW98943.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 39.85 380 ACR06634.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 40.15 293 AHI42085.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-62 41.29 293 AZR68497.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 39.77 293 ADF42985.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 39.85 380 ACR20842.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 40.15 293 AHI42073.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 40.22 380 ACR04394.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 210 210 92% 1e-62 43.18 303 ALF12169.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 210 210 93% 1e-62 40.53 299 AXR70237.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 209 209 99% 1e-62 39.29 279 QDG09152.1 integrase [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 209 209 93% 1e-62 41.67 293 AHW98949.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 93% 1e-62 40.91 380 ACR05563.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 1e-62 39.77 293 ADF42965.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 40.22 380 ACR04058.1 integrase [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 209 209 93% 1e-62 41.67 293 AHW98941.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 39.48 380 ACR21813.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 1e-62 39.85 380 ACR06648.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 210 210 92% 1e-62 42.69 303 ALF12167.1 integrase protein [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 209 209 93% 2e-62 41.67 293 AIU65596.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 40.22 380 ACR05323.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 39.39 293 AHI42112.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR21013.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR04115.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 39.77 293 AGP05167.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.91 293 ABU88871.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.15 293 ADF42954.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-62 41.67 293 AZR68532.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 93% 2e-62 40.91 380 ACR04013.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR06644.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.15 293 AHI42096.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-62 41.67 293 AZR68484.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.53 293 ABU88872.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 40.59 380 ACR04095.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR22171.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 39.77 293 ADF42980.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 209 209 93% 2e-62 40.36 288 AAS68571.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR04072.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 39.77 293 AHI42069.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.85 380 ACR20957.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 93% 2e-62 40.91 380 ACR04015.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 40.22 380 ACR21146.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 40.22 380 ACR03972.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 212 212 96% 2e-62 39.48 380 ACR04387.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.53 293 ADF42979.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.53 290 ASY08077.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 2e-62 40.15 293 QOQ51498.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR04392.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 40.15 293 AHI42079.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR06633.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 41.67 380 ACR22060.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.91 380 ACR06660.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR21159.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR06635.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 40.15 299 ACP28294.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 40.53 293 ACO81761.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 40.22 380 ACR05601.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.91 380 ACR05978.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR03401.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.48 379 ACR05011.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 40.91 293 AHI42058.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 40.15 293 QGV16554.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.91 380 ACR06625.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.53 380 ACR05269.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR22052.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.53 380 ACR05054.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.48 380 ACR22275.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 40.22 380 ACR20969.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 93% 3e-62 40.73 288 AAL98955.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.53 380 ACR04318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 93% 3e-62 41.09 288 AAL98930.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR07170.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 93% 3e-62 42.05 288 AAS68574.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 3e-62 39.77 293 ADF42973.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.91 380 ACR06631.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 3e-62 40.91 290 ASY08070.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.91 380 ACR05056.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 40.22 380 ACR03346.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR05100.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.48 380 ACR22153.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 3e-62 40.15 293 ADF42951.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 3e-62 40.53 380 ACR04398.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.48 380 ACR06743.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 40.22 380 ACR22089.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR05631.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 3e-62 40.15 293 QGV16549.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 3e-62 40.15 293 ABU88865.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 39.85 380 ACR03305.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 3e-62 40.22 380 ACR06671.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 209 209 93% 4e-62 39.77 297 AEI83210.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-62 41.29 293 AZR68495.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-62 40.53 380 ACR05670.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-62 40.53 380 ACR03367.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 40.22 380 ACR05090.1 integrase protein [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 208 208 92% 4e-62 42.15 290 AIU65655.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.48 380 ACR22082.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 4e-62 40.15 293 QOQ51514.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-62 40.91 380 ACR21157.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 95% 4e-62 40.00 380 ACR21126.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.48 380 ACR07075.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR20906.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.48 380 ACR04269.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 4e-62 40.53 293 AHI42100.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR04071.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR05643.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 99% 4e-62 39.29 288 AFS69035.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR07155.1 pol protein [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 4e-62 39.77 282 QGV16586.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR06643.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-62 40.91 380 ACR22114.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 4e-62 40.53 380 ACR04027.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 4e-62 39.85 380 ACR07081.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 5e-62 40.91 380 ACR20822.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 5e-62 40.15 293 AGP05175.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 5e-62 40.91 380 ACR04007.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR21802.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.48 380 ACR03397.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR22223.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.48 380 ACR07088.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR22262.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR06036.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.48 380 ACR21078.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.48 380 ACR05983.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 93% 5e-62 40.36 288 AAL98944.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 5e-62 40.91 380 ACR05617.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 40.22 380 ACR05022.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.48 380 ACR06641.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR04105.1 integrase [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 208 208 93% 5e-62 41.67 293 AHW98952.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 5e-62 39.85 380 ACR05005.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 5e-62 40.45 380 ACR03343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 208 208 92% 5e-62 41.70 300 ALF12170.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 98% 5e-62 39.43 380 ACR05944.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 40.53 380 ACR20820.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 6e-62 39.77 293 ADF42982.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 6e-62 39.77 293 ADF42947.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 99% 6e-62 39.29 288 QEJ77004.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR04065.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR04049.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR20932.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.48 379 ACR04996.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR07025.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 40.91 380 ACR05363.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR20945.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR20843.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR04085.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 40.53 380 ACR03332.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 40.22 380 ACR05033.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 40.91 380 ACR06676.1 pol protein [Simian immunodeficiency virus - agm.tan-1] Simian immun... NA 349975 222 222 96% 6e-62 41.70 1067 AAC57052.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR04050.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 40.91 380 ACR22200.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 6e-62 39.39 293 AEI83213.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 208 208 93% 6e-62 40.15 293 AHI42082.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 99% 6e-62 39.29 288 BAO16830.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 98% 6e-62 39.07 380 ACR03368.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 93% 6e-62 41.29 380 ACR05025.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.85 380 ACR22122.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 6e-62 39.48 380 ACR21770.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 93% 7e-62 41.29 288 AAL98947.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 211 211 96% 7e-62 39.85 380 ACR05390.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 39.77 293 ADF42962.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR06750.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR21085.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR05374.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR21143.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR21102.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR03981.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR05337.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR04064.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR06739.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR06670.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR21020.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 7e-62 40.91 380 ACR07157.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 7e-62 40.91 380 ACR05605.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 40.15 293 AHI42095.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 7e-62 40.53 380 ACR05059.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 7e-62 40.53 380 ACR04405.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR07136.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 39.77 293 QGV16561.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 40.15 293 AHI42128.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 40.53 293 QGV16552.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR05612.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 40.22 380 ACR05017.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 7e-62 40.91 380 ACR07102.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR22194.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 40.91 293 AHI42106.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR06720.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR22046.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR03379.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR21083.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR05607.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR07156.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR04051.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR22290.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR07090.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.85 380 ACR22210.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR05996.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 7e-62 39.48 380 ACR22327.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 7e-62 39.02 271 AHK12762.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR05264.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR22190.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR20861.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR04399.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR21182.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 8e-62 40.15 380 ACR03286.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR22238.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 40.22 380 ACR05036.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR04267.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 8e-62 40.53 380 ACR22184.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 8e-62 39.77 296 QGV16569.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR20829.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR06731.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR21087.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 8e-62 39.77 293 AHI42072.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 8e-62 39.39 293 ABU88864.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR05283.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR21819.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR07083.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 8e-62 40.45 380 ACR04323.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR03327.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR20915.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR21084.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR06749.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR05669.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR22236.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR21816.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR05255.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.85 380 ACR22182.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 8e-62 39.48 380 ACR04000.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR22320.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 9e-62 39.77 293 ADF42949.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR05085.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR21147.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR21162.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 9e-62 40.53 380 ACR05946.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR04062.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 40.22 380 ACR05032.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR06715.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR22225.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR20909.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR20971.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR22096.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR20853.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 9e-62 40.91 380 ACR07099.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 9e-62 40.53 380 ACR05953.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR07041.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR21124.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR21180.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR20888.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 40.22 380 ACR05023.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.48 380 ACR20880.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR07130.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 39.85 380 ACR05373.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 9e-62 40.22 380 ACR22091.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 9e-62 40.91 380 ACR21105.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21117.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05040.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR03971.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.91 380 ACR04337.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR05945.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22111.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR21154.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 293 ABU88868.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.91 380 ACR05640.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.53 293 ABU88870.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 99% 1e-61 39.64 288 BCA82584.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 99% 1e-61 39.29 288 ACS70918.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR20863.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR21039.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06032.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 96% 1e-61 39.48 288 ADJ00429.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 299 ACP28465.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.91 380 ACR21119.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR22134.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 379 ACR22049.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.39 293 AEI83214.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR03998.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06727.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.44 380 ACR21172.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22076.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR20901.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05985.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.78 380 ACR05357.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 299 ACP28417.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR05675.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06653.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR04408.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.53 293 QGV16571.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.39 293 QOQ51502.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22113.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR06752.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03334.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.53 293 AHI42094.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 296 QGV16572.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05298.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR05650.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.77 293 AHI42109.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20986.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04320.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21177.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20960.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03313.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR20955.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06657.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR20876.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR05949.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05662.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05614.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 41.29 380 ACR22088.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20826.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21131.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04288.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR07035.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20857.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 93% 1e-61 40.36 288 AAL98938.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04295.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR07084.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04396.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03371.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21158.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22063.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05652.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20973.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.91 380 ACR21015.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR03414.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 379 ACR03983.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 96% 1e-61 39.48 293 AHI42081.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 296 QGV16565.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR05594.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21012.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 41.29 380 ACR22098.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04385.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06015.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04011.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22321.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22071.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03289.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03279.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22269.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21030.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22218.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22068.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR21831.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04081.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21173.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22213.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20894.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 299 ACP28428.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22117.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05358.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 40.22 380 ACR22081.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR05998.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR05301.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21170.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR05990.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22281.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR05319.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20989.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04112.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20846.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR21111.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 293 ADF42945.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.77 293 ADF42970.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04086.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03391.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06687.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03404.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR22289.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR20848.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR06753.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20898.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21820.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR21784.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06008.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03351.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06055.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR04326.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR06729.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.85 380 ACR07028.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR03390.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR07024.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 93% 1e-61 40.53 380 ACR21185.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR04275.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 1e-61 39.48 380 ACR20868.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR21785.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR05340.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR07096.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR06737.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05106.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04389.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20835.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.53 290 ASY08076.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20851.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05088.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05367.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20985.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.11 380 ACR06002.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR22312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.78 380 ACR04116.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04091.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05379.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR22215.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR21165.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 379 ACR21765.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05004.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03382.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03396.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04070.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05044.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20874.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04299.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05311.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04314.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR21788.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR21840.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 379 ACR03976.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04280.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04287.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20891.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04335.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR06718.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05018.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03363.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05633.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04285.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 99% 1e-61 39.64 288 ADK35691.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 379 ACR05006.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.77 293 ADF42987.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05355.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.78 380 ACR21777.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05552.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20947.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR07044.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR05020.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR07164.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR06664.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR06038.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05086.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.78 380 ACR07056.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 379 ACR04979.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR22266.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03370.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20904.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR21873.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR07052.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03395.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR05964.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 379 ACR03996.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.91 380 ACR21188.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR22147.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04274.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR22233.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR22196.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20890.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20838.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05391.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR22139.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04272.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05063.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 95% 1e-61 40.37 380 ACR22085.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04386.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 96% 1e-61 38.75 290 ASY08068.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 39.77 293 ADF42975.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05114.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR05002.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR22061.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05050.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR20996.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05568.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR21014.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05560.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05595.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR21793.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 1e-61 40.15 293 AHI42065.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04993.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR04994.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR06717.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR03298.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR20948.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05103.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.91 380 ACR07030.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.48 380 ACR05937.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 1e-61 39.85 380 ACR03412.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR04357.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 1e-61 40.53 380 ACR05048.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 93% 1e-61 41.95 288 AAL98936.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 379 ACR03984.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR21809.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04330.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05979.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04333.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR22278.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04273.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06684.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 379 ACR04982.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 2e-61 39.02 290 ASY08073.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05072.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05656.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04356.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21823.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06711.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21049.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04090.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR20942.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04324.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05570.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22164.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07104.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03325.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05267.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06742.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20895.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22268.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04094.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22106.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04369.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21002.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07123.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06014.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05268.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07152.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06724.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21836.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06624.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05580.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05051.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05951.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05321.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20885.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 41.29 380 ACR22065.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07105.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05102.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03295.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05936.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05987.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04104.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21082.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05344.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03338.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05678.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05641.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07051.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20907.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05336.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.15 380 ACR20951.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR22086.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21774.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21794.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR21795.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05959.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06714.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05592.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05644.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 40.22 380 ACR06666.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06710.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR22145.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05345.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05368.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05043.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03285.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22318.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR22180.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05941.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07053.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05293.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 2e-61 39.29 288 AIS37196.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04379.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06654.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR20949.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05378.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07039.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21128.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05372.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20923.1 integrase protein [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 207 207 93% 2e-61 41.29 293 AIU65658.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03317.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21887.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04351.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03336.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07036.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05067.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03352.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05963.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21008.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21857.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07085.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20999.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR05555.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22264.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR06656.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 221 221 95% 2e-61 41.64 1010 ADB82817.2 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04375.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20860.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06738.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR20821.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 2e-61 39.77 293 QGV16550.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05627.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03280.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05263.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR22206.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03349.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR22282.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR06045.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06705.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 2e-61 40.15 293 AHI42110.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05676.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03987.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07111.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR22208.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05371.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21826.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05305.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03320.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04056.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07061.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22149.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05271.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05272.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05315.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR22209.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.15 380 ACR05626.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07139.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05575.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05280.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05619.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 AHI42083.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR03319.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06659.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05313.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21201.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21169.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05970.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 293 AHI42124.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06004.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05282.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR21089.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR03316.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05326.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06001.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 2e-61 39.29 288 AFS68879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 2e-61 38.93 289 QEJ76293.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05296.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20953.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 95% 2e-61 40.37 380 ACR22090.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03353.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 293 AHI42120.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05318.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07079.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21099.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06708.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03399.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04303.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 ADF42983.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22286.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06060.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 2e-61 40.15 299 ACP28445.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05270.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03315.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05284.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04035.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 94% 2e-61 40.82 288 QEJ76519.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05351.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR20925.1 pol protein [Rabbit endogenous lentivirus type K] Rabbit endog... NA 596477 221 221 96% 2e-61 40.96 1110 AZY88388.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 379 ACR05012.1 integrase [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-61 41.29 293 AZR68516.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06691.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR04009.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05559.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 QGV16560.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 QOQ51518.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06688.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.93 380 ACR04391.1 integrase protein [Simian-Human immunodeficiency virus] Simian-Human... NA 57667 206 206 93% 2e-61 41.29 293 AIU65597.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 293 ADF42964.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.42 380 ACR22041.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR07133.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR21883.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21195.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.91 380 ACR05629.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06702.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06678.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR05314.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.68 380 ACR05109.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21123.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR21045.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR22140.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04076.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 290 ASY08074.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 ABU88867.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 2e-61 39.29 288 AGE13701.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05094.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22316.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.91 380 ACR22231.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05087.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR21086.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22224.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 2e-61 37.86 288 AFM82896.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04370.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21152.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22197.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 95% 2e-61 40.00 380 ACR04317.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05999.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR06639.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 293 QOQ51497.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03979.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21775.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR05672.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04306.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.91 380 ACR05554.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05092.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR22059.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR03419.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03421.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR20911.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.02 293 AHI42068.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21787.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03310.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 293 AHI42091.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR22234.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21029.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05660.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR05055.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04395.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07144.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR07166.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22202.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21060.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05097.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21033.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04293.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04350.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04336.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04990.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03300.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 96% 2e-61 38.75 290 ASY08078.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.15 380 ACR04311.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04363.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05994.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 299 ACP28424.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 299 ACP28457.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04069.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04372.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03385.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07161.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04089.1 pol protein [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 40.15 301 QGV16504.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR03985.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03292.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21027.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04310.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.82 380 ACR22078.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR03986.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05325.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21054.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR03288.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05681.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.11 380 ACR07142.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 94% 2e-61 40.07 380 ACR03333.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21894.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04404.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05389.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR04354.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.85 380 ACR20941.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22244.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR05968.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.53 380 ACR04355.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR21778.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR22306.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 2e-61 39.48 380 ACR07107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 2e-61 40.07 380 ACR05940.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.39 293 AHI42113.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 2e-61 39.77 299 ACP28478.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07042.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03359.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR06039.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR04316.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22265.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR22157.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.85 380 ACR05014.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07172.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR04008.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.02 293 ADF42978.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 293 ADF42952.1 pol protein [Rabbit endogenous lentivirus type K] Rabbit endog... NA 596477 221 221 96% 3e-61 40.96 1110 AZY88398.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03995.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07125.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22276.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20833.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04025.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.05 380 ACR05573.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03290.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04402.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22317.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21808.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.93 380 ACR22205.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR20990.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR04002.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 294 ABU88862.1 pol protein [Rabbit endogenous lentivirus type K] Rabbit endog... NA 596477 221 221 96% 3e-61 40.96 1110 AZY88393.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04276.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04992.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR04053.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03978.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR06017.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04012.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05277.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.42 380 ACR21079.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 3e-61 39.29 282 BCA81302.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR03356.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR06712.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05680.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28280.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28274.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR06630.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR07049.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04045.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05262.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR03377.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 3e-61 38.93 288 BAX85416.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05957.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21798.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR22300.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR04286.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21807.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04082.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21176.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04097.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR22050.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04377.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR05074.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04325.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28412.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.91 380 ACR03281.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR21876.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22287.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR04292.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR07141.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 40.15 293 AHI42088.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28418.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20845.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR06043.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 41.29 380 ACR22084.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03324.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05366.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR04020.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR21144.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22241.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR22183.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04060.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22299.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04410.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20844.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05322.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07134.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05938.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 40.15 293 QGV16546.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05384.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20914.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05564.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04298.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21055.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.39 293 AHI42111.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 41.89 380 ACR03991.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR22057.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.42 380 ACR20875.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22304.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR07097.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05375.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR06700.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07076.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03380.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03303.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21773.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20964.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05939.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05286.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR21047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR06706.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22309.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03326.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21077.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21776.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05674.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 293 AHI42125.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.39 293 QGV16553.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR03296.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20935.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21829.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28414.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 40.44 379 ACR04995.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR06051.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR22291.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05955.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04283.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21052.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR21064.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR22314.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03988.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07167.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28467.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05566.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR05095.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28413.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28429.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 40.15 293 AHI42114.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.39 293 AHI42102.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 93% 3e-61 41.67 303 ALF12152.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28278.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28282.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR04029.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR22201.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05642.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22270.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07037.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR21038.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05324.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05657.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 3e-61 38.93 288 BAO18226.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR06048.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05658.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22322.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR21197.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.60 380 ACR03309.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR07033.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.42 380 ACR21040.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.53 380 ACR05057.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21848.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05654.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR04010.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR20827.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05620.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07146.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR06029.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22130.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21815.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21093.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR22294.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22108.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.91 380 ACR06744.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21783.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03293.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 93% 3e-61 40.91 288 AAL98949.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22261.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22152.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05624.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 220 220 96% 3e-61 41.33 1007 AAT68795.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05556.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 41.29 380 ACR07082.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05299.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05343.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR03409.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21021.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05667.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR21100.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 3e-61 38.93 288 BAX85241.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.77 299 ACP28448.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 98% 3e-61 39.78 278 AKN91466.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21824.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR03410.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 3e-61 40.15 380 ACR05935.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05341.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22087.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22214.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR05610.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 3e-61 39.39 293 QOQ51500.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22232.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR22297.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.11 380 ACR21196.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 3e-61 39.48 380 ACR07072.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.11 380 ACR21818.1 integrase [Simian immunodeficiency virus SIVsun] Simian immun... NA 330887 205 205 88% 4e-61 40.16 270 CAI99181.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.11 380 ACR04068.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.11 380 ACR04302.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 40.67 293 AHI42101.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 40.15 293 ADF42948.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 4e-61 39.29 288 ACB36814.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR21138.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 38.75 380 ACR21837.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR03340.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 4e-61 40.53 380 ACR20830.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.11 380 ACR21056.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR05016.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28283.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR06649.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 95% 4e-61 39.63 380 ACR20927.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR03994.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 93% 4e-61 40.53 380 ACR21896.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR03398.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR20870.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28485.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28432.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR06030.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 209 209 96% 4e-61 39.48 380 ACR04108.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28486.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR07101.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04103.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 4e-61 39.64 288 BAO16315.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28483.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.42 380 ACR21001.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.05 380 ACR04378.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.39 293 ADF42953.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR21059.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04034.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR21017.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR06650.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.91 380 ACR21851.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR04001.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR20836.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR03360.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR05070.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 4e-61 38.87 288 QDM36611.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04980.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.42 380 ACR22251.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR21125.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR22324.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.15 380 ACR05598.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.85 380 ACR07031.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR21861.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR05274.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04004.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.91 380 ACR05026.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR06628.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.15 380 ACR21164.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR22295.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR05276.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR05292.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR21003.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR06047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR04401.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04111.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.05 380 ACR22323.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR20910.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR04268.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR06035.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR03358.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR06674.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR03283.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.15 380 ACR06061.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR05078.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR21814.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04403.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04040.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR20968.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR04113.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR03389.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR03308.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR22189.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR05989.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR07057.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR04371.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR21053.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 206 206 99% 4e-61 39.29 288 BAX84492.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR20962.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR05317.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 299 ACP28340.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.42 380 ACR21832.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR21860.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR21183.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 4e-61 39.77 293 ADF42974.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 4e-61 39.29 288 BAO18216.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR21090.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR05973.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.48 380 ACR20871.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 4e-61 40.53 380 ACR22105.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 4e-61 39.11 380 ACR21187.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.53 380 ACR07117.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21797.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21006.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 96% 5e-61 38.38 277 QEJ76084.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 38.93 288 BAO17671.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR22104.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR05984.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR05338.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21075.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR22118.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 293 QGV16547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 38.57 288 ACU29182.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 93% 5e-61 40.36 288 AAL98937.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.53 380 ACR04322.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR06046.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21875.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR06681.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 293 AHI42074.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 293 QOQ51501.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR22245.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR05630.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21076.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21091.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28314.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21140.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR07147.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR06730.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21844.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 5e-61 39.39 290 ASY08067.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28464.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28482.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR06006.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21194.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.53 380 ACR04296.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR04308.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.15 380 ACR21850.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR04360.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR04365.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21120.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21136.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.53 380 ACR21103.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21880.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR20892.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.15 380 ACR06673.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.39 293 QOQ51499.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR20934.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21192.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21139.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR06041.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR06662.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR21811.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.53 380 ACR05639.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 40.36 380 ACR06741.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR20837.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR05075.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 39.64 288 BCA81812.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 39.29 288 BAX84966.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21762.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR05969.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21000.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28433.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR20981.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR05112.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR03982.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 39.29 288 ATN24729.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28420.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR05030.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.15 380 ACR06005.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21203.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR05101.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 5e-61 40.15 380 ACR03992.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 39.29 288 AXL09962.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 38.93 288 QGK89497.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21153.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 5e-61 39.77 293 ADF42988.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 5e-61 39.29 288 BAX84515.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR21072.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR20931.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 5e-61 39.77 299 ACP28477.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.48 380 ACR05038.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.11 380 ACR06658.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 5e-61 39.56 380 ACR20920.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR05648.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20991.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR05295.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 39.39 293 ADF42963.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20965.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR20879.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR22285.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20869.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR21767.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR04114.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR21155.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR03311.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR05077.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR21835.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR21893.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 39.77 293 AHI42090.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 38.57 288 UXX60969.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.56 380 ACR05942.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR22097.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR05019.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR05290.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20988.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR21095.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR21191.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 206 206 93% 6e-61 39.77 299 ACP28285.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR03278.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20834.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR22187.1 pol protein [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 39.77 293 QGV16536.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 39.29 288 BCA82316.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 39.29 288 BCA82072.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR03411.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR21769.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 379 ACR04985.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 40.15 293 ADF42984.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 39.77 299 ACP28431.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR06679.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR05307.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR04343.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR21048.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR06034.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR06746.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR05279.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.85 380 ACR22102.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR04383.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR22242.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR05369.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.85 380 ACR05013.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.56 380 ACR04021.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR20950.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 38.21 288 ACU29276.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.42 380 ACR04361.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR05110.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 38.93 286 ADA71899.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR05591.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR06000.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR03372.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR20976.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 6e-61 39.77 299 ACP28440.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 38.57 288 UYP42170.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR04374.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR21888.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR21206.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.07 380 ACR04304.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR20979.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR03347.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR20828.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR22137.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 6e-61 39.29 288 QGK89520.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.85 380 ACR06740.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.15 380 ACR05588.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR21109.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 6e-61 40.53 380 ACR06719.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR03369.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.11 380 ACR21127.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 6e-61 39.48 380 ACR06040.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.77 293 QOQ51516.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR20840.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR03417.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR20873.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.39 293 AHI42084.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.93 288 QEJ76658.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR05089.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.53 380 ACR06632.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.02 293 ADF42956.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.57 288 QEJ77649.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR04364.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.15 380 ACR06713.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR21796.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR04067.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR21009.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR06025.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 379 ACR03999.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.21 289 AFO67882.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.77 299 ACP28450.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 96% 7e-61 38.75 271 AHK12767.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR04989.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.15 380 ACR22185.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.53 380 ACR05312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR05392.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.57 288 ACU29180.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.15 380 ACR22220.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR20858.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR21881.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR22302.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.54 288 AEA11316.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR05634.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.53 380 ACR20917.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR21028.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR06692.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR22193.1 polymerase [Simian immunodeficiency virus] Simian immun... NA 11723 219 219 99% 7e-61 39.64 1031 AAD12147.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.77 293 AHI42103.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.39 293 QOQ51503.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.93 288 BAO17520.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR21166.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR04349.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR03990.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 93% 7e-61 40.36 288 AAS68575.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR05031.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.15 380 ACR22107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR20978.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 38.93 288 QDM36591.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 39.15 288 BAO18159.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR05046.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR21104.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR05071.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR04393.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR06672.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 96% 7e-61 39.48 288 UTH78964.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.15 380 ACR04347.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR06009.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR20997.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 7e-61 39.64 288 BAO17626.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.11 380 ACR06696.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 93% 7e-61 40.91 380 ACR05359.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 208 208 96% 7e-61 39.48 380 ACR05561.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.48 380 ACR05039.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR21081.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.48 380 ACR20926.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR05383.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR03302.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR21129.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR05098.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR04380.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 95% 7e-61 39.63 380 ACR22319.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR21046.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 7e-61 39.77 299 ACP28444.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 7e-61 40.15 380 ACR05653.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR22240.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 7e-61 40.15 380 ACR22101.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 7e-61 40.15 380 ACR22181.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 7e-61 40.15 380 ACR07046.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 7e-61 39.11 380 ACR20940.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR03362.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR05638.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR21804.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR21859.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR04101.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.42 380 ACR20823.1 Pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 219 219 99% 8e-61 38.93 1023 AAF07325.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 8e-61 39.77 299 ACP28480.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.53 380 ACR05377.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR04366.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR21181.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.85 380 ACR05034.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR21163.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 96% 8e-61 40.59 303 ALF12153.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.15 380 ACR06667.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.15 380 ACR21011.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.15 380 ACR07120.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 39.77 380 ACR04301.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.53 380 ACR05308.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 93% 8e-61 40.36 288 AAL98952.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 93% 8e-61 39.64 288 AAL98961.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 8e-61 39.77 293 AHI42062.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 8e-61 39.77 299 ACP28288.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.85 380 ACR06747.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR03341.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR22203.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.19 288 QDM36475.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 96% 8e-61 38.01 271 AHK12766.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR03361.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR03405.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR04014.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 38.75 380 ACR04003.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.52 288 ABO92679.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.15 380 ACR22279.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.93 288 BAO17128.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR22292.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.21 288 BAO17692.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 98% 8e-61 38.71 380 ACR04054.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 8e-61 40.15 380 ACR22173.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR04382.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR05254.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.57 288 BAO17334.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 8e-61 39.02 293 QOQ51496.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR07140.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.48 380 ACR22305.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 8e-61 38.93 288 BAX84480.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 98% 8e-61 39.07 293 ADF42955.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR05947.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 96% 8e-61 38.38 293 ABU88866.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR21858.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR04018.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.11 380 ACR06652.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 8e-61 39.56 380 ACR20954.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 9e-61 39.02 293 ADF42944.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.15 380 ACR22156.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR05287.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 99% 9e-61 38.57 288 BAO18168.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.48 380 ACR07045.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.15 380 ACR06018.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR20993.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 98% 9e-61 39.43 288 ACU29047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 219 219 94% 9e-61 41.57 1016 AAM90222.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR21810.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR21061.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.48 380 ACR21842.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.15 380 ACR22144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 94% 9e-61 40.74 288 AAL98945.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 9e-61 39.39 293 ABU88863.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR22267.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 9e-61 39.02 293 AEI83205.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR21051.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 9e-61 39.39 271 AHK12760.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 9e-61 39.39 293 AEI83207.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR04300.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 38.75 380 ACR04279.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR07063.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR22288.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR06003.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.15 380 ACR22172.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 38.75 380 ACR05081.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.85 380 ACR21168.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.30 380 ACR20983.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR07173.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.19 380 ACR21758.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.57 288 ACU29219.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR22038.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR04407.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.15 380 ACR07027.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 9e-61 40.53 380 ACR06693.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.21 288 QEJ76421.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 39.29 288 QEJ76297.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.93 288 AXL09939.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 9e-61 39.77 293 AHI42092.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR22058.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 9e-61 39.11 380 ACR06056.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 37.80 288 QEJ77183.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.93 288 BCA81753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.19 288 ACU29153.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 9e-61 38.71 275 ABL67000.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 1e-60 39.39 293 QGV16543.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04367.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR05260.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR21151.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 94% 1e-60 38.58 299 ACP28341.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 94% 1e-60 40.82 288 AAS68568.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 41.42 288 AAS68569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 287 AWF73458.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20929.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.68 380 ACR05310.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05015.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACU29375.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 1e-60 40.53 293 QGV16545.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR05346.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR05954.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR06062.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 QWY47156.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR04031.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR20966.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR21772.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04297.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACX35946.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 98% 1e-60 37.99 293 ADF42958.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03335.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05266.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05365.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03392.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 205 205 92% 1e-60 41.44 303 ALF12172.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20855.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03366.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 QEJ77107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.53 380 ACR05602.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21161.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 98% 1e-60 37.99 288 QWY47086.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.91 288 AAL98925.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05360.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR21885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 AFM82931.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 AHI42105.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR07100.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.53 380 ACR22095.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 40.81 380 ACR05024.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 41.20 288 AAL98960.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03339.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05354.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 QEJ77360.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 BAO16707.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 ADF42981.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR07066.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21895.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 BAX85433.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 AFS68888.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.02 290 ASY08079.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.56 380 ACR22204.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20933.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACU29120.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 96% 1e-60 39.11 288 UTH78963.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 40.15 295 QGV16570.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 287 ADQ26694.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.30 380 ACR05104.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.43 288 UYP42168.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20847.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR05683.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR04100.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20937.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03365.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05659.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 QMS46335.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 ARQ22111.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 1e-60 39.39 301 ADQ26692.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04281.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR21812.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 ACS70886.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 QEJ76846.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 QGV16551.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05069.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.30 380 ACR03386.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR22277.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 AXL09925.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR04106.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 ADF42977.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22110.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACY70315.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BAX84500.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 AFH67518.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21870.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22283.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR21827.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.02 293 QGV16548.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR21043.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR05288.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR06698.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 QLC45717.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.82 288 AAL98926.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 AEI83209.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR06661.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 205 205 93% 1e-60 39.39 299 ACP28312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.30 380 ACR05668.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR06663.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR04063.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR21825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 ACU29260.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.91 288 AAL98956.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 AXL09947.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.82 298 ALF12160.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21066.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 299 ACP28275.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BAX87918.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22325.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03307.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04390.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04368.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 QMS46867.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.68 380 ACR22178.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR03418.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22217.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 QEJ77696.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.21 288 QEJ77384.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 AEA11312.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BCA82544.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22311.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.53 380 ACR21071.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR22253.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04309.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 299 ACP28307.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 299 ACP28318.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 293 AGP05169.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.05 380 ACR20912.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 95% 1e-60 39.63 380 ACR05558.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21884.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22054.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20963.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR04332.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 BAX85479.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACU29200.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR05381.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04362.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21068.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 AXL09951.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 39.64 288 AAL98928.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.91 288 AAL98942.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21856.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR03989.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20850.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20967.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR04376.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05105.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BAO17965.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 QGK89518.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 299 ACP28416.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 BCA82780.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 40.15 293 AHI42067.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.77 293 AHI42075.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05606.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04290.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR05045.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21031.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 38.75 380 ACR20995.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR22179.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 ACL01263.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 37.86 288 BCA82821.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BCA81766.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 ATN24559.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR07124.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04409.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.15 380 ACR05952.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21854.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.02 293 ADF42986.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR06058.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21205.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05975.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21886.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.30 380 ACR03374.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR20884.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 39.39 299 ACP28326.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BAO16205.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 37.85 288 QEJ76443.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22273.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 1e-60 40.53 380 ACR06707.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR06686.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21863.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 QEJ76441.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 ACU29094.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 1e-60 40.60 303 AXR70235.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 39.29 288 AFS68856.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 ACU29344.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22074.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05275.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR22035.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 BAX84863.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR05961.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 92% 1e-60 40.84 380 ACR07095.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.48 380 ACR03993.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 BAO16391.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.93 288 AXL09940.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 38.57 288 UOP55580.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-60 37.86 288 UYP42292.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 1e-60 40.82 288 AAL98946.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR21792.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04059.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR04307.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 1e-60 39.11 380 ACR03282.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 96% 1e-60 38.38 293 AHI42066.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO16531.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR20825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 ALR96755.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 ACU28927.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ADN28132.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 2e-60 40.91 288 AAS68572.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 299 ACP28316.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAX87755.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 AYN62767.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR06042.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR07098.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAX84412.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAX87750.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.48 380 ACR03344.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 AEA11260.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAX84483.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 QWY46947.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR05291.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR20889.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR06010.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 293 ADF42960.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 QEJ76590.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BCA82217.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.48 380 ACR22051.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.53 380 ACR05991.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.07 380 ACR05647.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR06647.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.77 293 AHI42070.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 40.38 299 ACP28308.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ACU29353.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR05339.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR21833.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05600.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR22259.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 QEJ77273.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR07129.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR07070.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR03406.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAX84910.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21186.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO18281.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 2e-60 40.36 288 AAL98929.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR06651.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR03973.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR06059.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.77 293 ACO81762.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.54 288 AEA11291.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.05 380 ACR04381.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21130.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 AXL09948.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 ADN28202.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.48 380 ACR05058.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR04353.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 286 ADA71891.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 293 AEI83203.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 299 ACP28289.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.43 288 ACX35950.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05943.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 299 ACP28319.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 UXX60342.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR05349.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR06677.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR07029.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.02 293 ADQ26695.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.02 299 ACP28356.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 299 ACP28323.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 89% 2e-60 40.48 380 ACR22328.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAX87769.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 QMS46293.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR20970.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR20930.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 2e-60 41.44 299 ALF12168.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BCA81442.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 QDM36555.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ACU29222.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.85 288 AEO00313.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05980.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR22195.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.82 380 ACR22148.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR20882.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.15 380 ACR21114.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05586.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 AGE13675.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 AFM82943.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.53 380 ACR05356.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 QGK89453.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 QEJ76258.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21760.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR03980.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21761.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO18279.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 98% 2e-60 39.43 288 BAU25138.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR20872.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 40.30 293 AHI42127.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ABR68173.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 ABR68161.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.77 287 ADQ26691.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21868.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR22042.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 38.75 380 ACR21132.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.53 380 ACR05061.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 QEJ76727.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05582.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR05958.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 38.75 380 ACR05062.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 UYP42472.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 AAL01976.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.87 288 BAO17794.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 93% 2e-60 40.91 380 ACR22075.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR03975.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR04352.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BCA81500.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 92% 2e-60 41.83 301 ALF12158.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR03364.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 293 ADF42961.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 ATN24751.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 38.69 380 ACR04109.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 38.75 380 ACR21839.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 207 207 96% 2e-60 39.11 380 ACR21074.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAX84454.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 AXL09924.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 QEJ77224.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 39.29 288 BCA82264.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 95% 2e-60 39.26 380 ACR05557.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR21889.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 299 ACP28461.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 QEJ76883.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 96% 2e-60 39.34 288 UTH78966.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05665.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.02 293 AHI42130.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 94% 2e-60 39.70 276 ABO92717.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO16702.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 39.77 380 ACR21113.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.93 380 ACR22162.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 QEJ76355.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ADH16526.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.48 380 ACR05382.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR22127.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05677.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAX84545.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 2e-60 40.15 288 ACU28948.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 39.77 380 ACR20956.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR04005.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR21822.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BCA81971.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO17831.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BCA81690.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR07113.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ACU28833.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ACU29256.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 ACG71194.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAO16773.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR06754.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.53 380 ACR06623.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR22222.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 39.29 288 BCA82803.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 AFS68964.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 38.75 380 ACR05108.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR06745.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR22249.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.48 380 ACR21145.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.39 293 ADF42971.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR07092.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.02 293 AHI42119.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR20922.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR04400.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ADI86569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 AFS68870.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 39.29 288 BAX85012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BAO18243.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 AFM82881.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05331.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 38.75 380 ACR22307.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.53 380 ACR03348.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 BCA82048.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 39.29 288 BAX85495.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 ACM44585.2 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 38.75 380 ACR05066.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 39.70 380 ACR07087.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05960.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAO16634.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 AAC83516.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 94% 2e-60 40.45 288 AFH67581.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR05971.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR06716.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR05060.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 40.44 380 ACR05010.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR21007.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 QEJ77713.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR06655.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.48 380 ACR21202.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR22303.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05621.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.48 380 ACR21764.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 UXX59661.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 ABR68170.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR03345.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR05362.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 BAO16304.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.93 288 BAO16804.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 ACU29198.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ADN28259.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 39.29 288 BCA82268.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR20936.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR20916.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.57 288 ATN24599.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 38.21 288 QEJ76794.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 2e-60 37.86 288 AAC83505.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR04348.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR05661.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 2e-60 39.11 380 ACR06640.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 2e-60 39.02 299 ACP28345.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-60 38.57 288 ACU29139.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 2e-60 39.43 288 AFS68980.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-60 38.93 288 BAO16167.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 2e-60 40.15 380 ACR04997.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-60 38.93 288 BCA82586.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-60 38.21 288 AFS68960.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-60 38.93 288 BAO18314.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 92% 2e-60 42.05 302 ALF12142.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR07137.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR22310.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05664.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21779.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 3e-60 40.53 263 UHM21798.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QMS46899.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AGE13696.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.22 287 ACG71243.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.91 380 ACR22064.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 3e-60 37.99 278 AKN91519.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QJC70355.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QEJ77862.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA81591.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 3e-60 39.27 288 AAO61897.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05289.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR03299.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.53 380 ACR22072.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QEJ76754.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACY70313.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO18053.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 UXX60443.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA82781.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 38.75 380 ACR20913.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05332.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR03304.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.39 293 QGV16556.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.02 299 ACP28335.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR06721.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR04384.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.56 380 ACR04016.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 37.86 288 BAU25448.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.22 288 ACG71145.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAO17029.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AAL01979.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACU29043.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX84799.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05599.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05073.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR22293.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 98% 3e-60 39.07 380 ACR20883.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR04102.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21069.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21869.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR03375.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA82529.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR06680.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21112.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05080.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.39 290 ASY08075.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.39 293 ADF42969.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.39 299 ACP28443.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.29 288 BAO17608.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR03415.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 40.00 380 ACR05304.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.30 380 ACR04345.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.39 299 ACP28475.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 92% 3e-60 40.22 299 ALF12159.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.48 380 ACR07109.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR06697.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR03291.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 3e-60 39.07 278 AKN91391.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 ALR96548.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QEJ76304.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QEJ77654.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR20974.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.48 380 ACR05027.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21817.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR04096.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 38.64 293 QOQ51515.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 379 ACR04998.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAX84479.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR22228.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.85 380 ACR22163.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.77 293 QOQ51506.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 37.86 288 ACU29234.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO17633.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.19 288 AFM82923.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AAL01978.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR03394.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 289 ADR79241.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO16218.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 UOP56414.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAO17489.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QGK89504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO16480.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 AAL01927.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 96% 3e-60 38.38 293 AHI42087.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 93% 3e-60 40.82 303 ALF12171.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.29 288 BAX84684.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 3e-60 38.35 288 BAO17440.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR22284.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAO16404.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA81838.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACU28906.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.53 380 ACR06642.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 38.75 380 ACR05064.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR04042.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.29 288 BAO17722.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 AGE13708.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACS70819.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAO17488.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX84445.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05330.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR07062.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05000.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QGK89447.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX87879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 3e-60 38.57 288 QEJ76504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACU29400.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR21845.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21032.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR05353.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 3e-60 38.91 263 UHM21867.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO16502.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 3e-60 40.36 288 AAL98935.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACX35947.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR05597.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR06012.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR04026.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.56 380 ACR21882.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR07150.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21843.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 40.38 287 QGV16566.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.39 293 QGV16557.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QEJ77621.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QMS46493.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAX84518.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 ADN28213.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAU25133.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QLC45844.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 UYP42910.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 3e-60 39.64 288 AAS68578.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 AFH67584.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 ACU28852.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ACL01280.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR05294.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 39.02 299 ACP28339.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QEJ76427.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QGK89469.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BCA81773.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.43 288 UXX59850.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.79 288 BAO18200.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 UYP43275.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAU25439.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 37.85 288 QEJ76081.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 AFM82917.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AFM82930.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.48 380 ACR21010.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR22112.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.91 380 ACR22077.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX84532.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 3e-60 40.91 288 AAL98934.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BCA81546.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 37.86 288 AAC83537.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 BAX85476.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAX84677.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR22073.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 38.75 380 ACR04044.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QMS46405.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 AFH67475.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AAL01975.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 AFH67570.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 39.77 380 ACR06019.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR03355.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.77 293 AHI42086.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ADN28219.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA82074.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.16 288 QMS46627.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 QEJ77348.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 3e-60 39.43 288 BAO16743.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05646.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR06022.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR06757.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR04088.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR05590.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR20902.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.02 293 ADF42946.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 39.29 288 BAX85397.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 ADH16580.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAX84785.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX84344.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR04373.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21065.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 38.75 380 ACR20946.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.92 293 ADF42950.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.16 288 QEJ76622.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 AXL09932.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAX84457.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR20893.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.39 293 AHI42115.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 ACY70281.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAU25383.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.21 288 BCA82176.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.54 288 ACU29168.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.15 380 ACR05009.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 3e-60 40.00 380 ACR22158.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR05352.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR21879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 QEJ76783.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BCA82031.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAX85088.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BCA81691.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 3e-60 39.70 267 QFD66664.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 3e-60 39.11 380 ACR06031.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 204 204 93% 3e-60 40.15 304 AXR70238.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 3e-60 39.02 299 ACP28336.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.57 288 BAO18052.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 AGB52025.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 AGE13721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 3e-60 38.93 288 BAO16441.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 4e-60 40.96 523 QLK12819.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.02 299 ACP28392.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.39 299 ACP28284.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 4e-60 41.29 288 AAL98958.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 AAL01925.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 39.77 380 ACR22237.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BCA81735.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 QWY47142.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAX84669.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA81618.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR05628.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR07135.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAX84782.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA81363.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 QDM36533.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.02 299 ACP28353.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BCA81878.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BCA81811.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO16341.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.05 380 ACR07069.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 UYP42288.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA81905.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAX84398.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AFM82907.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR20896.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR07121.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 292 USW23893.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO16704.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AAL01965.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.46 288 ABO92736.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR05625.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR05632.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR06723.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX85242.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR21050.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 4e-60 39.77 271 AHK12765.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 379 ACR03970.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.02 299 ACP28327.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 39.15 288 BAO18274.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 BAO18289.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 ACG71203.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 UXX61382.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 ALR96660.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QEJ76134.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAX87878.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QEJ77389.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 4e-60 39.07 284 UXM24870.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.15 380 ACR20824.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR05329.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR22043.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR03420.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 4e-60 40.96 524 QLK12759.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 AFS68970.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA81827.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO16872.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR06733.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR21865.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR20952.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 287 QLC45587.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 92% 4e-60 40.59 301 ALF12165.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 4e-60 39.50 299 AHK05830.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX84980.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 UXX60099.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX84504.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR21107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR07110.1 pol polyprotein [Simian immunodeficiency virus] Simian immun... NA 11723 217 217 94% 4e-60 40.82 1047 AAA91906.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QGK89488.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 QMS46361.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX85517.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 ALR96595.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 ACU29012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AXL09944.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 4e-60 39.43 288 BAX87889.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QEJ77228.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR05671.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 4e-60 40.82 299 ALF12161.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 ARQ22119.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 QEJ76274.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 AAC83503.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QEJ77566.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 4e-60 39.02 271 AHK12769.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 4e-60 40.96 528 QLK12737.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.39 299 ACP28287.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 AAC83530.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 QEJ77872.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO17758.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 ADH16537.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAX85538.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR06011.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 282 BAX84257.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 4e-60 40.96 528 QLK12724.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 94% 4e-60 40.45 288 AAL98932.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 ATN24973.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AXX75632.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.43 288 UXX59880.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.87 288 ACG71144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA82054.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.50 288 AWW87335.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 ABO92728.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 AFK08950.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.53 380 ACR20831.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR22056.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR03322.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO17576.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AXL09966.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO16837.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QWY47150.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA81325.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 AFK08958.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 QEJ76692.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR04087.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 UXX61553.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 ACU28898.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX84340.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO16486.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BCA82733.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 BAX84919.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO17007.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 93% 4e-60 40.53 288 AAL98927.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 4e-60 39.07 286 ACM44553.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 94% 4e-60 39.21 300 ALF12154.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.39 293 AHI42122.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 QEJ77852.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 UXX61296.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.52 288 AFS68957.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 UXX60381.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAU25473.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR03378.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 41.89 380 ACR22070.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.02 293 AHI42093.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.39 299 ACP28437.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR21200.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 BAX84734.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 AOA49654.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 QEJ77396.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 UXX61504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO18277.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 4e-60 39.39 271 AHK12768.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR20938.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR20943.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR21062.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO17856.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 AOA49755.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 QDG09180.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR04294.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.53 380 ACR05335.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 39.11 380 ACR05052.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 96% 4e-60 37.94 288 UJO52255.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.21 288 BCA82095.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 ABR68199.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 4e-60 38.75 380 ACR05611.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAO17862.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 ATN24703.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 AAL01928.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 AFK08913.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 4e-60 39.07 278 AKN91559.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 4e-60 38.21 282 BCA81261.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 96% 4e-60 38.75 293 AHI42098.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 4e-60 39.02 299 ACP28322.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 4e-60 40.53 380 ACR20886.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BCA81662.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.93 288 BAO16570.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 BAX84761.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 37.86 288 AAC83501.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 4e-60 38.57 288 QMS46637.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 38.75 380 ACR04039.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.48 380 ACR20841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.21 288 AIS37154.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.21 288 BCA81670.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 98% 5e-60 39.07 288 UYP42308.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.21 288 BAO16569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.16 288 BCA82435.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 95% 5e-60 39.41 380 ACR04359.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.19 380 ACR03977.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAU25262.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAO18201.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 AAL01926.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 BCA82009.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 5e-60 39.77 380 ACR20998.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR21122.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 AXL09937.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 AXL09929.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 ACY70253.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.21 288 BCA82510.1 pol polyprotein - simian immunodeficiency virus SIVagm (isolat... Simian immun... NA 11726 217 217 94% 5e-60 40.96 1039 S46347 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 39.64 299 AHK05827.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR04321.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 BAO16200.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 38.75 380 ACR05966.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAO18352.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR04315.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAX84861.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAO17898.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 QWY47182.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAO16716.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 ACU28857.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAX84507.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAO16994.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 BAO16910.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.21 288 ADN28130.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.93 288 QEJ77546.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 282 BCA81274.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 5e-60 39.02 293 AHI42076.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 39.29 288 BAO16745.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BAU25159.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BCA81941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 BCA81813.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 5e-60 38.57 288 QMS46869.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 5e-60 39.77 380 ACR22250.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR21118.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR21067.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 BAO16747.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAX84918.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 QEJ76537.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 5e-60 39.78 288 WDY34865.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 217 217 94% 5e-60 41.57 1023 ALS54617.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR05967.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 QEJ76867.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 5e-60 38.71 278 AKN91452.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO16285.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 5e-60 39.11 288 AVI10507.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 BAX85380.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.16 288 AFH67507.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 BAO17968.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 QEJ76530.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 QMS46779.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 QWY47152.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 AFM82900.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 282 BAO16097.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 282 BAX84305.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 38.75 380 ACR04032.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 BAX85409.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 QEJ76617.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAX85031.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 5e-60 40.07 288 AFS69129.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 5e-60 39.39 293 AHI42121.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 5e-60 40.53 380 ACR21098.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 37.50 288 BCA81458.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 AFK08907.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 37.86 288 QEJ77136.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 5e-60 38.35 278 AKN91570.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR22272.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 5e-60 40.15 380 ACR04331.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR05993.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 5e-60 40.15 380 ACR21116.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 UXX59800.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 BAX84773.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 UXX60179.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO16551.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.54 288 BAO17812.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 AXL09941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO18264.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO17788.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 ACU29133.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.21 288 BAO16397.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.08 288 AFS69003.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 5e-60 40.07 267 ACI62689.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 5e-60 39.02 293 QOQ51504.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR04017.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 40.44 380 ACR04055.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 BAX84897.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BCA81327.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 5e-60 39.11 380 ACR22263.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO16787.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.93 288 BAO17657.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 BAO18246.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.57 288 QEJ77637.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 5e-60 38.38 288 ADK35713.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 5e-60 39.02 293 ADF42959.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 5e-60 39.02 299 ACP28404.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 ACG71195.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 QGK89444.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BCA82570.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 QLC45862.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 6e-60 39.77 380 ACR21156.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 ADN28221.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 AAC83527.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAO17359.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QEJ76158.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BAU25188.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 UXX61204.1 Pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 216 216 99% 6e-60 38.93 1023 AAF07317.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 6e-60 39.48 380 ACR21852.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 96% 6e-60 38.75 380 ACR05091.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 6e-60 39.39 380 ACR03329.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BCA82711.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.52 288 QGK89475.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 ACU29245.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17189.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 ACM44601.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAX84570.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 6e-60 40.15 380 ACR04110.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 89% 6e-60 40.48 380 ACR04107.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 206 206 93% 6e-60 39.77 380 ACR22165.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 6e-60 39.02 299 ACP28380.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BAO18136.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAU25550.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 6e-60 38.35 278 AKN91274.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAU25273.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 6e-60 40.07 288 UJO51967.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAX84814.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16451.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QEJ77401.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 6e-60 39.33 288 BAX87823.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.11 288 QEJ77888.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 UXX60477.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAX84784.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR04338.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR21799.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 ALR96607.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAX87886.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAX85337.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 ACX35925.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16937.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 ACU29333.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BCA82060.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR22094.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR20924.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16540.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BAX84914.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.46 288 BAX85235.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17727.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 6e-60 39.02 293 QGV16559.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 96% 6e-60 37.94 309 ACO71321.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR06709.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 6e-60 39.77 380 ACR22191.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 6e-60 39.02 299 ACP28401.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 QWY47076.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QEJ77269.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17967.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 UYP42215.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 6e-60 39.02 299 ACP28276.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 QEJ77653.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QEJ77386.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAU25114.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 6e-60 39.11 288 WDY34973.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16142.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17725.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 ADN28250.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAX84522.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 6e-60 39.43 278 AKN91368.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 38.75 380 ACR03323.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BCA82004.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 AFK08949.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 UYP42484.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 AFS69014.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16610.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.79 288 ACU29079.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAU25511.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16422.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO16487.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 6e-60 40.22 288 AUW31531.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAX87701.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 6e-60 39.07 278 AKN91395.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 6e-60 39.02 293 AHI42064.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 38.75 380 ACR22039.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 UXX61012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BCA81318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BCA82169.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 QEJ76401.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 6e-60 40.15 380 ACR06732.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BAO17686.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 BAO17659.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 QMS46569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 288 AAC83529.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BCA82789.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 BCA81719.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 39.11 380 ACR05385.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 6e-60 38.75 380 ACR07163.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 6e-60 39.02 299 ACP28365.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 6e-60 39.64 288 AAL98940.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17609.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.50 288 BAO18166.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO17408.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QEJ77659.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BCA81362.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 QEJ77458.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 282 BAX84308.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 37.86 282 BAX84264.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 95% 6e-60 39.41 380 ACR20900.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 BAO18155.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.21 288 QDM36622.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.93 288 UJO52054.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 38.57 288 UXX61633.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 6e-60 39.29 288 ACX35912.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 282 BAX84278.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 39.11 380 ACR07064.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 39.77 380 ACR05350.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 7e-60 38.64 299 ACP28372.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 7e-60 39.29 299 AHK05821.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO18056.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BAO16986.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO16516.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAO17753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 AIS37187.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 38.38 380 ACR04046.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 ASM56708.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BCA82812.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAX84414.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 ACS70865.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 ACY70359.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 UXX60863.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 AXL09946.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 39.77 379 ACR03997.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 38.75 379 ACR05001.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 39.39 380 ACR05637.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 39.11 380 ACR05565.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAX84847.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 7e-60 39.07 288 BAO16895.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAU25100.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 QMS46703.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 AYN62775.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 282 BAO16068.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 203 203 93% 7e-60 39.02 299 ACP28369.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 ARQ22151.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 ATN24557.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 AGE13694.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BAO18073.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 AFS68863.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAO16808.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 APX42743.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 QEJ76140.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BCA81887.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BCA81693.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO17227.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAX85363.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 AGE13697.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO16525.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 39.77 380 ACR07055.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 39.11 380 ACR05393.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28375.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28350.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.54 288 QEJ76319.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BCA82167.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO17490.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.46 288 BAO16120.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BCA81906.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 AFM82910.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.86 288 QEJ77700.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 QEJ77116.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 7e-60 39.70 283 AXY79082.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.39 293 AHI42123.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 38.75 380 ACR03354.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 217 217 94% 7e-60 40.82 1470 P27973.2 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28377.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28305.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAX87896.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAO16699.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 QEJ77363.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 7e-60 39.43 288 AEW47805.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BCA82502.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 38.75 380 ACR21148.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.39 299 ACP28293.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.39 299 ACP28484.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28351.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.86 288 AAL01977.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.43 288 BAX84513.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 39.29 288 AGE13718.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 7e-60 39.27 288 AAL98950.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAO16337.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 39.77 380 ACR05583.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 39.11 380 ACR22235.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 40.15 380 ACR03342.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 40.15 380 ACR20849.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 38.75 380 ACR04028.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BAX84733.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 ACG71178.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BAX84846.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 287 AFS68920.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 299 ACP28368.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 7e-60 40.00 288 AAL98931.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BAU25033.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BCA82013.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 7e-60 38.71 288 AFM82864.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 AIS37148.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 39.02 293 AHI42089.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 7e-60 40.53 380 ACR20839.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 7e-60 39.11 380 ACR05258.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 7e-60 41.13 264 QTF48839.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 BAO18267.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.50 288 BAX85005.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 QGK89507.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 ATN24547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.93 288 BCA81937.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.86 288 QEJ77850.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 ABO92752.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.21 288 UXX61088.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 39.29 288 BAO17664.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.86 288 QDG09140.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 7e-60 40.91 288 AAL98959.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 7e-60 38.64 297 AEI83211.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 38.57 288 BAX84613.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 7e-60 37.86 288 QEJ77097.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 7e-60 38.57 304 QDS01662.1 integrase protein [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 8e-60 39.39 293 QGV16564.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 40.91 380 ACR22069.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 40.15 380 ACR06052.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 AIS37170.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 ACM44625.2 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QMS46859.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.46 288 BAX84319.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAO16309.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO17702.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAX84405.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 38.75 380 ACR05021.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 AEA11294.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 BAX84646.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 ACM44573.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.08 288 QEJ77693.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 UXX60619.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.46 287 AWF73455.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 8e-60 38.93 310 UOP56194.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 40.53 380 ACR04342.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 39.11 380 ACR03318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ77716.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89459.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 UXX59981.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO16343.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QMS46657.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QWY46969.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 8e-60 39.39 293 AHI42118.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 8e-60 39.05 288 AEO00327.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ76137.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QEJ77351.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.79 288 QGK89443.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QEJ77070.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 AFS68973.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.50 288 ACY70318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QGK89493.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 40.15 380 ACR20975.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 BAO16856.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BCA81822.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 BAO16972.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89452.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAX85019.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89463.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAX85459.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 QEJ76292.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 AVI10557.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAX85280.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 8e-60 40.53 288 AAL98933.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ77819.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 39.77 380 ACR07032.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 39.11 380 ACR22227.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 ACU29387.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ77553.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.46 288 BCA82025.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 BAU25016.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 AIS37265.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BCA81523.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 ADB96057.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BCA81896.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.50 288 BAX85394.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BCA82223.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 287 QLC45548.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QDG09236.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 BAX84461.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO16589.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 ACU28983.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO18111.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 8e-60 38.57 337 AEX15408.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 8e-60 38.35 278 AKN91518.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 39.11 380 ACR05083.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 92% 8e-60 40.98 299 ALF12145.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.50 288 QDG09249.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89466.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ77101.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 AGE13714.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 37.86 288 ALR96685.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO16644.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89461.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QMS46443.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 40.07 288 QGK89460.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO17247.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 39.77 380 ACR20961.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 39.11 380 ACR05007.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 8e-60 39.02 299 ACP28403.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QMS46717.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 QEJ76238.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 UYP42566.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 8e-60 38.91 288 AAL98954.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 ACU29024.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 ACU29394.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 ABO92676.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 8e-60 40.15 275 BCA82624.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 216 216 99% 8e-60 38.93 1028 ALS54625.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 8e-60 38.57 323 AEX15411.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 39.29 288 QEJ77802.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 8e-60 39.33 288 ADN28246.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 8e-60 38.71 288 BAO17264.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 8e-60 37.63 288 UXX59891.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 BAO17681.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 AFU91884.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAU25080.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAX87784.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 8e-60 39.77 380 ACR05320.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 8e-60 38.75 380 ACR05986.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 QMS46301.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 UXX60427.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.79 288 BAO16606.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 QWY47160.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.93 288 BAX85426.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.43 288 QEJ77037.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.57 288 ASM56704.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 8e-60 38.21 288 UXX61508.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.14 289 QEJ76910.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BCA82835.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 QEJ77701.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BAO16951.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 AEW47800.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 ATN24663.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 40.07 288 QGK89462.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 39.92 379 ACR04988.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAX84710.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.86 288 BAO18032.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 ARQ22057.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAO16636.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 AMP41509.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 QEJ77847.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BAX85493.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.79 288 BAU25509.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 38.13 288 UXX60280.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BCA81928.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.86 288 BAX85482.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAX87721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 ACU29172.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BCA82202.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.16 288 QEJ77365.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BCA81349.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 QEJ76511.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO16660.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 QEJ77091.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAO16169.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.52 288 AYN62761.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BAO17928.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 QEJ77871.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO16125.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 39.70 288 UXX61432.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 40.15 380 ACR03402.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO18282.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BCA82776.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO16862.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 9e-60 38.64 299 ACP28342.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 QMS46425.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAO16722.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 199 199 68% 9e-60 48.96 210 ADB82809.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 286 ADA71936.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 40.15 380 ACR20881.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO16940.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAO16160.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.86 288 ALR96727.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 9e-60 38.71 288 BAX87702.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 40.15 380 ACR05571.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 9e-60 40.00 263 UXX59882.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAX84362.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 9e-60 41.29 288 AAL98951.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 40.07 288 QGK89456.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BAO16459.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 9e-60 38.71 288 QWY46897.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 40.07 288 QGK89494.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAX85516.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.86 288 ACY70320.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 ACU29163.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.79 304 QDS01617.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 9e-60 38.75 380 ACR05273.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 9e-60 39.11 380 ACR22080.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 QEJ77728.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BCA81780.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 ACX35897.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.93 288 BAX84800.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 ACM44547.2 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 QMS46433.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAO16602.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 9e-60 40.07 288 QGK89449.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 AGB52021.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.72 290 QEJ76108.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 39.77 380 ACR22260.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 39.39 380 ACR21871.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 40.15 380 ACR05684.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 9e-60 40.15 380 ACR21846.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 282 BCA81277.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 9e-60 38.71 278 AKN91483.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 9e-60 39.02 299 ACP28290.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAU25051.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.86 288 QEJ77483.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.57 288 BAX84843.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.19 288 AFS68922.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 37.50 288 BAO18163.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 QEJ76778.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BCA81544.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 QEJ77534.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.21 288 BAO17883.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.43 288 ALR96778.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 9e-60 38.19 288 UXX61591.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 9e-60 38.85 288 BAO18230.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 39.77 380 ACR06685.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 39.11 380 ACR21867.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 282 BAX84283.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.02 293 ADF42972.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.39 293 AGP05173.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89450.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ARQ22079.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BCA82768.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89483.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 37.59 288 UJO52215.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17793.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO16765.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX87816.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17631.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 APX42747.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ADN28232.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ76257.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 304 QDS01678.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 39.11 380 ACR05933.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 1e-59 40.68 300 ALF12144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 AAL01913.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 AAL01964.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16182.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16293.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UXX60441.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QJY77588.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25328.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAX84642.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89441.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QMS46735.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 1e-59 40.82 297 ALF12146.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 40.15 380 ACR04411.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 39.33 288 UJO52260.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BCA82325.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.85 288 BAU25372.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO18120.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 AFH67551.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 1e-59 39.27 288 AAS68577.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.11 288 QIQ18548.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.75 380 ACR03400.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.69 380 ACR06665.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ACY70284.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 AFM82916.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ABR68145.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.75 380 ACR21160.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 39.54 380 ACR05604.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 286 UWJ07200.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 94% 1e-59 38.58 299 ACP28301.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX85144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO16126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16677.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.43 288 QEJ76508.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ77211.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.69 380 ACR05259.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 39.77 380 ACR05297.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.02 299 ACP28395.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QEJ76535.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QDG09224.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACY70327.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 BCA81695.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16947.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81687.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 UYP42426.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 39.48 380 ACR05934.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 39.48 380 ACR20819.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAX84293.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 38.35 278 AKN91353.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX84912.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ATN24597.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX85532.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AEA11289.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16143.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 40.15 380 ACR06683.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.33 277 ACG71197.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.16 288 QEJ77595.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ77681.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA82603.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17886.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46455.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.43 282 BAX84269.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO18367.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACM44504.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QEJ76177.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 38.35 288 QEJ77043.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ76475.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84794.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 39.78 288 QBK58167.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 QEJ77661.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ADN28229.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACY70269.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX85109.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ALR96695.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 93% 1e-59 40.15 380 ACR22150.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 286 ADA71870.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BCA81265.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QWY47132.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.16 288 BAO17202.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16406.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81317.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ALR96533.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX84571.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 38.75 288 AVI10735.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81926.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16663.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACF37721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAO16104.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 37.94 288 ADF29012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ACU29140.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17294.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 ALR96567.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.79 288 ACX35899.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX84368.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81976.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UXX60011.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO18294.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 UXX59735.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO17504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA81784.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAO16102.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 1e-59 38.93 347 AHN54805.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84334.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25175.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QMS46371.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.75 380 ACR20887.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAX84266.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 37.59 288 AEO00306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO16561.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 39.48 288 AEO00314.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ABO92703.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA82185.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 UYP42568.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16278.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO18318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AEA11298.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 92% 1e-59 41.67 301 ALF12149.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.75 380 ACR05562.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 38.38 380 ACR21167.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 282 BAX84311.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA82533.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO17500.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX85316.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO17110.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 37.59 288 QEJ77069.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46731.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACM44555.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25068.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACM44576.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84819.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.33 266 ACI62720.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 205 205 96% 1e-59 39.11 380 ACR21790.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAX84296.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.70 277 QEJ76088.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX84618.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACU28845.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46813.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25542.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UXX59625.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX85255.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17696.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17797.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA82226.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16958.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16734.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 282 BAO16077.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16710.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.43 288 UXX59820.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17790.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QEJ77327.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QEJ76400.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UXX61217.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UXX59830.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 ADN28234.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 UXX59763.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.52 288 QGK89446.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACY70324.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16392.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 40.15 380 ACR06646.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 1e-59 38.57 338 AEX15407.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16495.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QMS46313.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX87771.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 39.43 288 BCA82012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16829.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AYN62754.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO18270.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16463.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA81892.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA82270.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA82362.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25404.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO18324.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QWY47084.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 40.15 298 AXR70244.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 38.38 380 ACR04358.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BCA82820.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACU29319.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO18327.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81563.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 AVI10721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16938.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ77139.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 287 ACG71234.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 39.11 380 ACR20919.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.77 380 ACR05950.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 39.42 288 AEO00349.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ADN28171.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46561.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ADN28169.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16471.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ATN24787.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ACX35910.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ATN24541.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO17514.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25125.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89442.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25352.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25097.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 40.15 380 ACR03306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ACM44520.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17934.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BCA82712.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.16 288 QEJ77614.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO18160.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 39.70 288 UXX61565.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ77695.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA81413.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84569.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 39.11 380 ACR20859.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.77 380 ACR06725.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 299 AHK05799.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACS70890.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16546.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 BAX84384.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 AIS37258.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84516.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO16139.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81404.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84737.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.43 288 UXX59808.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17195.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 UXX59971.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAX84752.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.02 293 AHI42104.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO18034.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 AFK09309.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ77797.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84835.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX87808.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ77333.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAU25363.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ALR96740.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QEJ76998.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX85535.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO16735.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA82706.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ77484.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 1e-59 37.59 288 AVI10493.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.08 288 BCA81514.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ77444.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 92% 1e-59 41.29 301 ALF12147.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.33 275 BCA82628.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 279 ATZ77556.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 38.18 296 ADQ26689.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QEJ77560.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84349.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UYL89884.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.11 288 BAO18255.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX87894.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACU29299.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16622.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ76403.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX87838.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAX85530.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 39.07 278 AKN91489.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AFK08956.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17439.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16791.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16335.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA82793.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 UXX60069.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QMS46589.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 39.29 288 QEJ76183.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 1e-59 40.67 288 AAS68570.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16688.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 1e-59 39.11 283 AXY79075.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 1e-59 38.75 275 UMX34319.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AEA11301.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25429.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.08 288 BCA81392.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 ACU29169.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 QEJ76350.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 ACU29285.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QEJ76171.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BCA82068.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX84521.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.19 288 BAO18354.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ76984.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17597.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.39 380 ACR06694.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16806.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QWY47060.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAX84438.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81341.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16541.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16214.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 ACY70306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO16379.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 BCA82056.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 39.15 288 BCA81509.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QWY46949.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 38.71 288 UXX61391.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ76448.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAX85460.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.50 288 USW23767.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ABO92720.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QWY47118.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA81875.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX85209.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 QEJ76195.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84336.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX85395.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QMS46643.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QEJ77417.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 295 ABD33642.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 201 201 88% 1e-59 39.76 258 AAY15966.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 38.75 380 ACR22040.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.39 299 ACP28281.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25466.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 AFH67466.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA82021.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89470.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QGK89476.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81972.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.11 288 ACX35941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 AFU91918.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25545.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16425.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 AVI10671.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BCA81765.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.85 288 QEJ77815.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA81320.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17648.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 94% 1e-59 40.07 288 QGK89451.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 39.11 380 ACR05065.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 38.75 380 ACR22093.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.77 380 ACR06699.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16303.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16398.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 38.35 288 BAX84635.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAX84430.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAU25024.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 QEJ77390.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BCA82360.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17887.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 98% 1e-59 37.63 288 UXX59887.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 38.75 380 ACR06044.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.54 380 ACR22083.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.85 279 ADD92865.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.02 293 AHI42107.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACU29401.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 UXX61008.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 QEJ76353.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACU29368.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ARQ22037.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BCA81979.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAO17767.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO17116.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 40.15 380 ACR21862.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 286 ADA71934.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 AOA49649.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAO16513.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 BAU25317.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.57 288 UYP42547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO17101.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.93 288 BAO18372.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 ACG71177.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.79 288 UXX60981.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAX84560.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 38.21 288 BAX85187.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 1e-59 38.91 288 AAL98941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 1e-59 37.86 288 BAO17811.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 39.15 286 ADA71918.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 QGK89468.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 ACL35642.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAX84894.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 ACU29231.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QEJ76800.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO18300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 AGE13688.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.50 288 QEJ76268.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO18016.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 AEO00290.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.35 288 AOA49645.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.93 288 BCA82425.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 39.11 380 ACR03969.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 38.75 380 ACR05334.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 UYL89869.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QLC45830.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 AVE02424.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.50 288 BCA82141.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.35 288 ATN24635.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.93 288 ACU29341.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.11 288 QMS46659.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 89% 1e-59 40.08 380 ACR06049.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BCA82552.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.50 288 AAC83528.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 ACU29103.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 QEJ77294.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.33 288 QEJ76549.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO17570.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QEJ76507.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAX85358.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.35 288 QDM36665.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BAO17802.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.77 380 ACR05992.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 282 BCA81252.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.77 296 AXR70241.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 40.07 269 QFD66613.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 92% 1e-59 41.54 299 ALF12150.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 38.64 299 ACP28376.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 38.64 299 ACP28405.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 AFH67573.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BCA82253.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 BAU25364.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.52 288 QEJ77502.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 39.29 288 AEO00302.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.85 288 BAO18157.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 ATN24901.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO16814.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 QEJ76805.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 UYP42463.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 1e-59 40.44 380 ACR22045.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 38.64 299 ACP28331.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BCA81964.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 39.70 288 QGK89484.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QEJ77066.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 40.07 288 AIS37151.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 BCA81792.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.71 288 ACU29192.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QMS46445.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BCA81930.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAU25382.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.93 288 BAO16748.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 QEJ77213.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.43 288 ACS70909.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BCA82556.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 UXX61118.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 QEJ77788.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 UXX60439.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 1e-59 40.15 263 UHM21755.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 1e-59 39.77 380 ACR21115.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 282 BCA81305.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 1e-59 39.02 299 ACP28361.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 1e-59 39.42 288 AVI10369.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BCA82091.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 AXL09959.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.35 288 ACU29306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.50 288 BAO17234.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BAX87733.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 1e-59 41.04 288 QBM14608.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO16238.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 AFH67557.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 1e-59 38.30 288 UJO52045.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAN19010.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QEJ77265.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 ACU29347.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.52 288 ABO92741.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BCA82374.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BAO16604.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.50 288 AAC83538.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 BAO17532.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.21 288 QEJ77132.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.52 288 BAO16756.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.11 288 BAX85182.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 37.86 288 UXX61426.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.57 288 BAO16885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 1e-59 38.93 288 BAU25467.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 1e-59 38.71 278 AKN91473.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82219.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60931.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AFS68882.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60067.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84505.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 38.30 288 QBK58164.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR07108.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 38.64 299 ACP28370.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.02 299 ACP28302.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16428.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.11 288 AFS68987.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 40.07 288 AFK08914.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16489.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25552.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.46 288 QEJ76181.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 ACU29240.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 2e-59 40.91 288 ARQ22134.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77746.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADF28968.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25558.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60348.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.35 278 AKN91340.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77038.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 QEJ77764.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX84774.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60531.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 AFK09301.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX61024.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR20897.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR05948.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 286 ADA71938.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 38.64 299 ACP28378.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.72 288 BAX85090.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76160.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA81835.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16240.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29194.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16643.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17665.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16916.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16898.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.64 288 QGK89477.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 ACU29269.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.85 288 UJO52070.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16282.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.54 288 BAO17349.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76440.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR20984.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.02 293 AHI42129.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.39 299 ACP28463.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 AFK08957.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU29398.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77527.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QWY47013.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX85204.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16499.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAX87855.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.52 288 BAO17885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 ALR96721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77346.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADM89530.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 AFH67572.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ARQ22128.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QMS46521.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16844.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AIS37163.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77061.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 QEJ77382.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AMP41510.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR06007.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 286 ADA71877.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AGB52015.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77575.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA81940.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 38.75 288 UOP56532.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 38.49 288 AVI10461.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17132.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA81839.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18250.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 38.75 288 UJO51956.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.42 288 AEO00289.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.18 288 UXX60223.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 39.11 380 ACR20977.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 96% 2e-59 39.85 295 ABD33646.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO17568.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ALR96564.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO18278.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX85167.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACY70342.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 QEJ76454.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR20939.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO18347.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.73 288 AQL58569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25580.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ76823.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16796.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AOA49701.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60935.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 AFS69006.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16506.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 2e-59 40.15 263 UHM21783.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.02 299 ACP28332.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25386.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.52 288 BCA82566.1 integrase protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ASV46099.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16969.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.63 288 QGK89454.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18202.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17957.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 UXX61516.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACM44524.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AEA11383.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60061.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76457.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60278.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR06645.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 39.39 380 ACR21849.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 282 BAX84307.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAO16081.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17557.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.48 288 BCA82102.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO18213.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QMS46507.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77432.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFM82869.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 UXX61597.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84859.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16658.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO16825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAO17977.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85287.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16945.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAX84272.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17494.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UYP42223.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76116.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84429.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84524.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60328.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.81 288 AEO00321.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BCA81291.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAO17123.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 UYP42510.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76556.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX85468.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.11 288 BAO17627.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AFH96850.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60147.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17952.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 QEJ76470.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82000.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 286 ADA71922.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 38.95 288 QWY47058.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84789.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25502.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.42 288 UXX61198.1 integrase protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ASV46126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.81 288 QEJ77658.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 AFS68998.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84931.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO18334.1 pol protein [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 39.77 282 QGV16574.1 pol [Simian immunodeficiency virus] Simian immun... NA 11723 215 215 94% 2e-59 41.73 1020 AIG51563.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76489.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 BAX85329.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16180.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16458.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.11 288 BAX87885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84453.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17728.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.16 288 QEJ77166.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QMS46679.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA81651.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 2e-59 38.52 307 ACO71327.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 99% 2e-59 38.57 312 AEX15416.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 282 BAX84299.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 38.64 299 ACP28343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA81888.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77405.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACS70859.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QMS46417.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 BCA82798.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16612.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACG71192.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR22239.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 37.63 278 AKN91477.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.81 288 ATZ77372.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX61472.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ALR96796.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 AFS68908.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77064.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA82760.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16178.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82783.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77555.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16564.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFS68992.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77842.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QDG09225.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACS70808.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.52 288 UXX60258.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AIS37230.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ABO92729.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 BAO16625.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16901.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 UXX59721.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17785.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16893.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84449.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 UOP56438.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17895.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29244.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 AAC83518.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76239.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 284 UXM24899.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR05256.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 282 BAX84288.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACB36799.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AOA49762.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.48 288 UTH78972.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX59561.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QGK89474.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 37.59 288 AEO00322.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACX35949.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QLC45750.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX85396.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 QEJ76240.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87716.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 QEJ76425.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82477.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA82384.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AOA49791.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR04099.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.02 299 ACP28297.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.39 299 ACP28279.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA82753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.33 288 UYL89925.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AFS68967.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 AAC83473.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ATN24879.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 2e-59 39.39 288 QMS46535.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17421.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82703.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFS68996.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFS68851.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 290 QPZ86442.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 37.86 278 AKN91449.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 UYP43124.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ACU29165.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77567.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85384.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77274.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 ACX35926.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA82761.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO16826.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO18247.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QWY46953.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29110.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 92% 2e-59 39.46 291 QOQ51517.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 38.64 299 ACP28364.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 39.02 299 ACP28292.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ACM44574.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17306.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16584.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17730.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ADN28245.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO16250.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ABR68175.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17743.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84409.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ALR96556.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84731.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 93% 2e-59 39.77 263 UHM21771.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 38.64 299 ACP28409.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85455.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.52 288 ACS70840.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACY70314.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QMS46499.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17599.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17449.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17452.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 BAO17182.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29128.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 QEJ77319.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 37.94 288 UTH78968.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 BCA81639.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU28922.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 39.77 380 ACR04327.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 203 203 99% 2e-59 38.57 339 UZY21305.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 202 202 93% 2e-59 40.15 301 ADQ26690.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16988.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 UXX59854.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 AIS37239.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84743.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX59935.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.35 288 BAO16724.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 ACM44559.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QDG09194.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AFM82862.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77046.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.46 288 QDM36576.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29309.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADN28126.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 39.39 293 AHI42126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAX84267.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 92% 2e-59 40.98 302 ALF12156.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAX85060.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 AIS37232.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 BCA81682.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87857.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84399.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AEA11375.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18239.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82040.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 38.75 288 UXX60231.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16488.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60781.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84791.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAX84494.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 BAX84599.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AGE13689.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17005.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR04047.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR22246.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 282 BAX84258.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU28978.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AFM82879.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85286.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 QEJ77636.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84924.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 AYN62766.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX84995.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85035.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 ACS70806.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 ACB36817.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 AFH67536.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 282 BAO16056.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16174.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAU25380.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17714.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 BAO18273.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17912.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACM44568.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AVI10543.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ALR96631.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17203.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77431.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU28994.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17345.1 Gag-pol polyprotein precursor [Simian immunodeficiency virus] Simian immun... NA 11723 216 216 95% 2e-59 40.15 1443 CBY88596.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 39.02 299 ACP28303.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ALR96654.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 AFH67553.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17932.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AFH67569.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QEJ76420.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16351.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX85155.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 QGK89448.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77525.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QDM36483.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60485.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25263.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77709.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 BCA81969.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16274.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.14 288 AFH67454.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18381.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16772.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ATN24625.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU28841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77377.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 39.11 380 ACR21133.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 93% 2e-59 40.15 263 UHM21758.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 286 UWJ07215.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QMS46765.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84413.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.33 288 UYL89908.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QWY46995.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UTH78979.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.72 288 ACS70873.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17979.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.34 288 UTH78951.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA82520.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87797.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QWY47130.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16917.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 38.49 288 QEJ76496.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25344.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ76472.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.38 380 ACR04023.1 pol protein [Human immunodeficiency virus 2] Human immuno... NA 11709 207 207 93% 2e-59 40.53 490 QLK12557.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 39.02 290 ASY08081.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76459.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18127.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18350.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QWY47078.1 pol protein [Human immunodeficiency virus] Human immuno... NA 12721 201 201 99% 2e-59 38.21 288 AEY77221.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADK35700.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACY70332.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.11 288 AEO00320.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84630.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ALR96799.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 39.11 380 ACR20908.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR06669.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.52 288 AIS37237.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60711.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BCA81519.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.79 288 BAO18366.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAU25376.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17777.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADN28239.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAU25161.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16168.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82214.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX60789.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77468.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR04278.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 280 ACG71126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 37.99 278 AKN91548.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 38.64 299 ACP28397.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFH67548.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA81744.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16731.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.16 288 BCA82765.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.70 288 UJO51953.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 39.33 288 QEJ76920.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAO16091.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16396.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 UYP42930.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 BAO16354.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16162.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16454.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 ACB36794.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17120.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.35 288 QWY47015.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85536.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.11 288 ATN24749.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82839.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAO18373.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QMS46781.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO17974.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84767.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACS70842.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 286 ADA71871.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAO16054.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 97% 2e-59 38.41 281 ADA71687.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QWY46905.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ77777.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16695.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16550.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76551.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.05 288 UXX61345.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 2e-59 40.07 288 UJO52053.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QEJ76777.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO16535.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.11 288 BCA82233.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17861.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 UXX59589.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17824.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX85011.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84381.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 UYP42312.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AKF02456.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76259.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17949.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25060.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX61028.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29037.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AIS37175.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ76126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA81786.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX87822.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84572.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84807.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 38.75 380 ACR07112.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 37.99 284 UXM24825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.35 278 AKN91313.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 292 UOP56426.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 200 200 88% 2e-59 39.76 264 AAY15967.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QWY47037.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AAL01963.1 pol protein [Human immunodeficiency virus] Human immuno... NA 12721 201 201 96% 2e-59 37.94 288 AEY77261.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX85064.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 97% 2e-59 38.41 288 BAO17272.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84510.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16358.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60567.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QDG09252.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AGB51985.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFS68844.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ALR96800.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87706.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 304 QDS01542.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 38.95 299 ACP28298.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR03284.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87758.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17199.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU28863.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AXL09961.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18130.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85350.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.11 288 WDY34856.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77594.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QGK89529.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77670.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17032.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76408.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAU25101.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16400.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QMS46719.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17826.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX61500.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAX84312.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 289 ACI62447.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 37.23 288 QIQ18633.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16820.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 BAO16585.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60929.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 AFS68918.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76299.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAU25571.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76349.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ77241.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16957.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16869.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO18162.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 QEJ76634.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO18158.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29363.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17373.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16930.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 286 ADA71885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 282 BAX84268.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAO16058.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 39.77 380 ACR06037.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA81559.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA81965.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.87 288 QGK89510.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84711.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 ARQ22102.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.11 288 ADI87258.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 UXX59901.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17114.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 37.99 288 ASM56753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 288 BAX87752.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA82508.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BCA81804.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BCA81431.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16708.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ADN28199.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.16 288 ADI87253.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO16680.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BAX84263.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17723.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO17210.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QEJ77028.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 BAX84792.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 UXX60623.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 BCA82112.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82411.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18268.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BCA82594.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 ACG71125.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 282 BCA81296.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 278 AKN91280.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX84455.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 ATZ77422.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 BCA82148.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82193.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 37.59 288 QBK58159.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84745.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.93 288 BAO16388.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.11 288 AEO00315.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16268.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX85072.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA82560.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA81810.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 BAU25492.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82291.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX87693.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA81314.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 39.02 299 ACP28295.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 89% 2e-59 40.08 380 ACR22055.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU29154.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18307.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84903.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AET08856.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ALR96734.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17536.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO18154.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX85322.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA82717.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.71 288 ACU28891.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 QEJ76806.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA81993.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.50 288 BCA81595.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.43 304 QDS01546.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 2e-59 39.11 380 ACR05333.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.07 380 ACR03373.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX87881.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ADM89525.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84732.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 QGK89445.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA82035.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.11 288 AFH96869.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO16548.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.11 288 UJO52178.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82299.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16655.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.87 288 AFS68860.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ACU29184.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 ADF28947.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 39.05 283 AXY79079.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QMS46787.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 AGE13666.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.08 288 QEJ77855.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17837.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 AFS68850.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16659.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.72 288 BCA82158.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17804.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAX84367.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAX84936.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16199.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BCA81903.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16687.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 38.64 299 ACP28330.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 2e-59 38.64 299 ACP28320.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 2e-59 40.15 380 ACR06701.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QEJ76172.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.86 288 BAO18126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO17818.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.19 288 BAX84566.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84499.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82162.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 37.85 288 ACU29078.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAX84875.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 ACY70336.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BAO16920.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 BCA82537.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 QGK89526.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.21 288 ACU29119.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 2e-59 37.23 288 UJO51941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 2e-59 38.57 288 BAO17803.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 2e-59 38.35 278 AKN91436.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16733.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60609.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81512.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 UXX60063.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 QMS46557.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UXX61400.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.72 288 UXX60217.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29039.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.16 288 AFM82933.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18330.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.79 287 AYN62746.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX85183.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 AFS69004.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17323.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82395.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84624.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA81343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX85444.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ARQ22153.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82076.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO17697.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 BAO16362.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFH67503.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 UYP42465.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QWY47208.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17542.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.70 288 BAO16971.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 UXX59545.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX85447.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82775.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82231.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84727.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO17077.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO17516.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18017.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU28899.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 286 ADA71888.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 40.53 380 ACR07148.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.75 380 ACR07118.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 36.79 288 BCA81688.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82203.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60967.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 39.29 288 UXX60250.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84926.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AVI10492.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX85393.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 ACM44567.2 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QWY46933.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81917.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX85053.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 3e-59 38.93 401 AEX15409.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 38.64 299 ACP28325.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 40.15 380 ACR07038.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29022.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ77414.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAU25127.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16870.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ76999.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AIS37181.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.19 288 BCA81656.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QMS46607.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82572.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ACU29267.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17976.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA81935.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UYL89894.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX85381.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ77781.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17023.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACX35929.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16755.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16213.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFS68933.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 QMS46873.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 39.70 268 ADA71557.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.33 283 AXY79048.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 39.18 274 ACG71196.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.95 288 AQL57538.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 AGB51959.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17004.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QMS46253.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QMS46919.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BAO16983.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ADH16547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82531.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81435.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81886.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UXX59553.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU28984.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 282 BAX84313.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ77292.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84394.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.48 288 AEO00328.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84377.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29060.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.16 288 AFK09299.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QLC45877.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 37.23 288 UXX60409.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18027.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84780.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16800.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 UTH78960.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QMS46553.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.52 288 AGE13710.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 286 ADA71944.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.75 380 ACR03337.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AVI10356.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QMS46343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17863.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACS70823.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29189.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX85439.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QJC70354.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 207 207 98% 3e-59 38.71 517 ACX34566.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 38.95 275 BCA82697.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU28839.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ABO92700.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX85288.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA81803.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX85142.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 ABR68198.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA82456.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.73 288 ATZ77279.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16365.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17406.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ77301.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82036.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84811.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76074.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 38.71 288 BAO17139.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 38.35 288 BAX85504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA82443.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 UXX61272.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA82194.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82493.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 287 QCO90373.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 39.70 275 BCA82672.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 93% 3e-59 38.91 275 UMX34312.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 39.11 380 ACR04344.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 BAX84969.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAO17868.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 UTH78980.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16827.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16599.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 AIS37204.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 BCA82518.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.71 288 AEO00333.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFS68873.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAO17588.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18102.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 37.99 278 AKN91479.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.75 288 QDG09227.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFS68968.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AOA49756.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACS70892.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ATN24909.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82117.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.65 288 UJO52029.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.48 288 AEO00275.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16280.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.30 288 UJO52117.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAU25440.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84374.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QEJ76248.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 36.77 288 BAU25054.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAU25276.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.19 288 UXX60157.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 AEW47814.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82001.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16258.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAU25078.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 QEJ77314.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 304 QDS01643.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 287 QLC45836.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.95 283 QGM78082.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 38.35 278 AKN91253.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 37.99 278 AKN91488.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 40.15 380 ACR20862.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 QEJ77329.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76703.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.69 288 AVI10535.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81439.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 BAO16786.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.59 288 QEJ77608.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ACU29228.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AYN62753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX87913.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAU25585.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ALR96760.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29218.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ76579.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AOA49718.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17810.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 37.99 278 AKN91261.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.38 380 ACR06703.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 39.11 380 ACR03330.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 BAO16682.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 ACM44518.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AOA49665.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX87844.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AAL01969.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU29138.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16960.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84520.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 37.94 288 QBK58166.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82077.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82804.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 39.39 293 AHI42060.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 3e-59 38.35 278 AKN91521.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.75 380 ACR21070.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.75 380 ACR22207.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17622.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.63 288 AVI10488.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81769.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAX84417.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU28951.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16151.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76221.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.05 288 UJO52272.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.38 288 AVI10450.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAO18128.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84654.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.01 283 AXY79069.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 282 BAX84260.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 3e-59 39.07 278 AKN91553.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.38 380 ACR05261.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 40.15 380 ACR05115.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UEC94312.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60871.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16878.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 ACM44543.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17362.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16639.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16492.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 QMS46893.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17905.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76370.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ADN28210.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ALR96682.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX87904.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AEA11369.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17778.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60859.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.33 288 UYL89926.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX61152.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BCA81821.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.14 288 BAO16812.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO17700.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ADH16566.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 ALR96623.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 38.64 293 ADF42967.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 95% 3e-59 39.55 274 AWT86328.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.70 299 AHK05813.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 39.77 380 ACR05076.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.14 288 QMS46357.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.48 288 UTH78941.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA81597.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16673.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 3e-59 40.67 288 AAS68573.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81801.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17221.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17827.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ABO92694.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX87725.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO17009.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.16 288 BAO16494.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16292.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 304 QDS01554.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 94% 3e-59 40.22 1013 ABO61054.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 39.77 380 ACR05981.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84629.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17103.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AFU91961.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76725.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82409.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.14 288 QEJ76478.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 BAO16759.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 UXX61058.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 ACS70841.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17423.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QEJ76156.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 UXX60338.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 3e-59 38.93 414 APO20992.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 286 ADA71948.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 282 BAO16067.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17537.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16399.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ALR96594.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QWY47033.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18370.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BCA81833.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81607.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QDM36698.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ76329.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 40.07 288 QEJ77189.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81566.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX85438.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 282 BAX84317.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.75 380 ACR21847.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82779.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.85 288 AEO00317.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17845.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60833.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QEJ77537.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16624.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17544.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAX84898.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BAO17237.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UDP23854.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.15 288 BAO18138.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82709.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BAO18312.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 ACU29213.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82811.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.75 288 UJO52174.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 38.64 299 ACP28383.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AFS69015.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA82787.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84348.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16859.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.48 288 AVI10662.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA81771.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BAO17143.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QMS46407.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BAU25506.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 UJO52156.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82782.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16338.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 40.07 288 UJO52048.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 3e-59 38.35 287 QEJ76229.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 96% 3e-59 38.38 380 ACR05386.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 204 204 93% 3e-59 40.53 380 ACR22067.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18096.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.42 288 ADF28995.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QMS46325.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU29102.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ76429.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81665.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.19 288 BCA82210.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.11 288 BAX84958.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BAO18099.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QEJ76288.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ARQ22077.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QDM36723.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81796.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ADK35709.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ALR96569.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QMS46847.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ76348.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 94% 3e-59 39.55 990 AAK01033.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.85 288 BCA82426.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 BCA82567.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAX84620.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA82369.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.08 288 BAO17071.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX85344.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82464.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.15 288 BCA82311.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82599.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 AFM82921.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17904.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA81336.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.70 288 ADH16514.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60723.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BAU25046.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ77462.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 AFK08813.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 38.13 266 QTF48861.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 38.64 299 ACP28333.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 3e-59 38.75 380 ACR21108.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ77158.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82018.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAU25301.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 ASM56715.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 39.11 288 UJO51930.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QMS46629.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFM82942.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16173.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX87930.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ76426.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.58 288 QHQ96638.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ77441.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BCA81989.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81415.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UXX59975.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACY70317.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 304 QDS01631.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 39.33 275 BCA82623.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 3e-59 38.38 380 ACR05636.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 97% 3e-59 38.77 281 ADA71694.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 36.43 288 QEJ76166.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAX84370.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BCA82027.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.70 288 AEO00332.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UXX60813.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BCA81649.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX84436.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO16965.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QMS46265.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.75 288 QMS46611.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.15 288 ACU28828.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ALR96806.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17942.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAU25423.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.11 288 BCA81487.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO18180.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX85351.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16188.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 3e-59 39.77 380 ACR21110.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAX84352.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16549.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ADI86620.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.79 288 QWY47154.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18074.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAO16166.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO18084.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17673.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 3e-59 38.57 282 BCA81270.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 3e-59 38.35 278 AKN91448.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 38.64 299 ACP28349.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 3e-59 38.75 380 ACR21121.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BAX84623.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 36.77 288 QRL06170.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 BCA81893.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 QEJ77845.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.49 288 BAO16423.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QGK89539.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QGK89491.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 UXX61246.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACU29258.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ABL66997.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ARQ22159.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ACM44600.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 QEJ76593.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 UXX60881.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 QEJ76356.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ADF28962.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 291 BAO17020.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 3e-59 40.15 380 ACR22247.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 39.70 292 ADI87238.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 3e-59 38.65 295 ABD33636.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ALR96705.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA82579.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 QEJ76193.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ACL35636.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AFS69024.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.72 288 BAO18054.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 AGE13683.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.13 288 ACF37519.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BCA81310.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO16737.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.91 288 ACU29081.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA81807.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 ALR96678.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 ATN24679.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 ACU28887.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.50 288 AEX91123.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 AGE13658.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 3e-59 39.18 275 BCA82631.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 3e-59 37.86 282 BAO16099.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 3e-59 38.21 282 BAO16090.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 3e-59 38.75 380 ACR21204.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17181.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAU25190.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.93 288 BAX87746.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 UXX60197.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.43 288 BCA81335.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BAU25196.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 288 BAO17854.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.57 288 BCA82778.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17325.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 38.21 288 BAO17293.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 3e-59 38.95 288 QEJ77120.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 210 210 96% 3e-59 40.22 657 ANT86121.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 3e-59 39.92 380 ACR22186.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 3e-59 38.38 380 ACR05111.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 3e-59 37.86 299 AHK05808.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 3e-59 39.39 299 ACP28455.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 93% 3e-59 40.53 348 AOW43031.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BCA82459.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 UXX61108.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BCA82109.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 UXX61456.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 QEJ76751.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BCA82063.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 UWJ07115.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.54 288 BCA82357.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ADH16512.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAO16128.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 AIS37215.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 39.11 380 ACR21080.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.75 380 ACR21135.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.75 380 ACR04284.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 AFS68880.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 BAO16720.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QEJ77610.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QWY47001.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 QEJ76499.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 BCA82119.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 4e-59 38.71 288 ACM44525.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QEJ76125.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ADN28183.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAO17712.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 38.75 288 UYL89897.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ACU28998.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BCA82380.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QEJ77813.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17012.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO18049.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 ALR96547.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO18342.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 274 ACG71179.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 4e-59 39.77 380 ACR04289.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.75 380 ACR21023.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 39.21 311 ABI29843.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX84628.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 39.70 288 BAO17913.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.11 288 AVE02414.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAU25169.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 39.70 288 BCA82312.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.37 288 QEJ77705.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.85 288 ABL66999.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAX87709.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAX85324.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 93% 4e-59 39.27 288 AAL98957.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.70 275 BCA82688.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.70 270 ADB92589.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.85 282 BCA81258.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 4e-59 39.77 380 ACR22252.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 39.11 288 UTH78954.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BCA81658.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX87861.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO16523.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.14 288 ACX35901.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 39.05 288 AFH67479.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 QEJ77752.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 AFU91909.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.93 288 QEJ76804.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16305.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 4e-59 37.99 288 QLC45480.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO17752.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.08 288 ADN28114.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ACS70893.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAX84320.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.70 275 BCA82635.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.15 288 UYP42582.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ADK35701.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BCA81825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 AFM82870.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16775.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAX84497.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 AFM82926.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 4e-59 39.07 288 BAU25165.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 QDG09159.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 QGK89519.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16847.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.93 288 QEJ76224.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BCA81685.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX84359.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.43 288 ACU29147.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 283 AXY79005.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.70 275 BCA82648.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 APX42738.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ACU28991.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.93 288 QEJ76839.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ALR96591.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QDG09275.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ACU28924.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 37.94 288 UJO52071.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BCA81899.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 AAC83506.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO16366.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16876.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO17495.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QGK89487.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAX85514.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ALR96781.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.72 288 AFS68911.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAX85490.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BCA82452.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 286 ADA71863.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 4e-59 39.39 293 AHI42080.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 37.63 278 AKN91430.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 38.35 278 AKN91297.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.38 380 ACR05327.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 38.49 288 UJO52207.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAX84598.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17691.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.46 288 QEJ76255.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17186.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16192.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16662.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX87924.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 38.49 288 UJO52078.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ATN24961.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 AFS68902.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 BAO16211.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QEJ77482.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 AFS69007.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX85403.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BCA81586.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.93 288 BAX84550.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO18024.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX84616.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17093.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 QEJ77859.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BCA82731.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.43 288 ADN28117.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 QEJ76188.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 AFS69027.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 4e-59 39.02 293 AEI83204.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.38 380 ACR21892.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BCA81864.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO16469.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 ALR96566.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.11 288 UJO51979.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAO16514.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 94% 4e-59 39.70 288 BAX84878.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 QWY46987.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 98% 4e-59 37.99 288 ALR96689.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17357.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 ACS70851.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 AFH67495.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16873.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 QMS46245.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.14 288 QEJ77758.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 283 AXY79055.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 QGA79714.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BCA82049.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 37.94 288 AEO00343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO18207.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX85407.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 39.11 288 UTH78940.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO17806.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.14 288 BAO16753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16307.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAO17529.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAU25226.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BCA82742.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 ACS70878.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 BAU25215.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 37.94 288 QEJ77521.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 283 AXY79031.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 38.58 275 BCA82611.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 277 AWT86395.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 BAO17213.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 BAO17069.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 96% 4e-59 38.75 288 AVI10460.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16181.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 QDM36441.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.57 288 BAO16407.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 AAL01967.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAX84929.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.79 288 QEJ76190.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 288 BAO16580.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 288 UXX59703.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.50 288 QMS46685.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 37.99 278 AKN91351.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AEW47829.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAU25191.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ACU29063.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.08 288 ADN28147.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.19 288 UXX61276.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAU25105.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAO16508.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 QEJ77493.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 93% 4e-59 39.39 263 UHM21870.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 4e-59 38.93 414 APO20936.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ATN24825.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.11 288 BAX85008.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.30 288 QEJ77615.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 UXX60645.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 39.07 288 BAO16527.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 QEJ77749.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 QMS46829.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 QEJ76379.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.11 288 BAX85056.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17386.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 279 AWT86392.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO16272.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17014.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 QEJ76072.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.46 288 ACU28838.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17133.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX84687.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX85540.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAO18190.1 pol protein [Human immunodeficiency virus] Human immuno... NA 12721 200 200 99% 4e-59 36.43 288 AEY77300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ77643.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAU25065.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.43 288 BAO16345.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO18046.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO18356.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AIS37218.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ALR96577.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.63 283 AXY79006.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 275 BCA82615.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 204 204 99% 4e-59 38.93 416 APO21000.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 4e-59 41.51 380 ACR03328.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 4e-59 39.02 299 ACP28311.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 37.86 299 AHK05797.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 92% 4e-59 40.38 269 ADA71822.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 99% 4e-59 38.21 295 AAG35641.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ACS70832.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BCA81788.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QWY46907.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 AEA11381.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 ABO92753.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAO17966.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 QEJ76644.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO18115.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAO17505.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ACU29323.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17284.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QWY46983.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 UWJ07095.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.70 283 AXY79000.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 94% 4e-59 40.07 266 QTF48851.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 4e-59 39.77 380 ACR21026.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 37.94 288 QMS46583.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BCA81659.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 QEJ77087.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO16393.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 ACU29227.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAU25522.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ACU29246.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.19 288 ACU29407.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAX84817.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO16210.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX84896.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 282 BAO16107.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO17393.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAX84603.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 AFM82911.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 39.11 288 QIQ18422.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX85449.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO18079.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ABL67001.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ77616.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ACU29275.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAX85061.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 UXX60300.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.37 288 BCA82797.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 37.50 278 AKN91294.1 integrase [Human immunodeficiency virus 2] Human immuno... NA 11709 201 201 93% 4e-59 38.78 299 ACP28400.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 273 AWT86394.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 39.42 288 WDY34982.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ABO92707.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.08 288 ACS70882.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAO16266.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAO18181.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ACG71214.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 AVI10345.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17527.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QWY47144.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 39.11 288 UXX60697.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 QEJ76616.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO18343.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ76423.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ77263.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 38.75 288 UYL89903.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.85 288 QEJ76417.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAU25148.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 93% 4e-59 39.77 263 UHM21719.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 286 ADA71869.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AFS68999.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.52 288 UJO52161.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO16668.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 4e-59 37.59 288 AVI10504.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 AGE13646.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.11 288 ACI62475.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 AOA49644.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ALR96528.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO18026.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO16904.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ACY70368.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 UXX60583.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ77596.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAX84380.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX85049.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 AFM82909.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 279 AWT86393.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.38 380 ACR22274.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX84674.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX85234.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAO17850.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BCA82283.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.43 288 BAX87772.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AFM82858.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 37.99 288 BAO16538.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 UXX59659.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 BAX87891.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BCA82137.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAO17455.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AFM82873.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX84820.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.08 288 QEJ77376.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QWY47045.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ADN28125.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ76367.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 38.85 288 UJO52137.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 93% 4e-59 39.39 263 UHM21898.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 282 BAX84259.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 282 BAX84309.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAU25064.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BCA82376.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX84751.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 UEC94280.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ACX35920.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AFM82885.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 36.79 288 AGE13672.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO18177.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 93% 4e-59 39.77 380 ACR04282.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 203 203 96% 4e-59 38.75 380 ACR06023.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 37.63 278 AKN91369.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ALR96629.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAO17208.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAU25557.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 ABO92740.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAX84496.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 AAL01915.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 QEJ77719.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 36.43 288 BAO16346.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 BAU25163.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 QEJ76222.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 QWY46895.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.79 288 BCA82071.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 QEJ77357.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 36.55 287 QPZ86434.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.14 287 ACG71238.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 92% 4e-59 41.06 297 ALF12163.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 98% 4e-59 38.35 278 AKN91392.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 94% 4e-59 41.70 1023 ALS54601.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 94% 4e-59 41.33 1023 ALS54609.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.72 288 BAO16496.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.93 288 BAO18097.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.63 288 ADP94083.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX85094.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 BAX87803.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.79 288 QEJ76374.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ACX35966.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ADH16538.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 QEJ77585.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.50 288 ALR96782.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ADN28182.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 282 BAX84302.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 UXX60597.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 AWW87338.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.14 288 BAX84673.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.43 288 QEJ77144.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 BAX84476.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.38 288 UXX60415.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 36.77 288 BAU25255.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 ARQ22073.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.21 288 ATN24689.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 4e-59 39.33 288 UJO52069.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 38.57 288 UXX60344.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 4e-59 37.86 288 UXX61126.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 94% 5e-59 38.95 275 BCA82626.1 pol protein [Simian immunodeficiency virus] Simian immun... NA 11723 214 214 96% 5e-59 41.09 1023 ALS54593.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.86 288 BCA82511.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.08 288 ACX35898.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.21 288 ACB36789.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.57 288 ARQ22088.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.86 288 AIS37238.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.50 288 ALR96801.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.21 288 ACU29318.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.57 288 BAX85401.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.85 288 QIQ18538.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 5e-59 38.30 288 UJO52141.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.81 288 BAX84827.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.86 288 BAX84462.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.21 288 BAO17751.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.21 288 ACM44541.2 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 38.21 282 BAO16086.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 96% 5e-59 39.48 288 ADF28970.1 integrase [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 99% 5e-59 37.86 288 BAO18256.1 Alignments: >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: AAA43071.1 Length: 1124 Range 1: 844 to 1124 Score:591 bits(1523), Expect:0.0, Method:Compositional matrix adjust., Identities:281/281(100%), Positives:281/281(100%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP Sbjct 844 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 904 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL Sbjct 964 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM Sbjct 1024 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 1124 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21064.1 Length: 1123 Range 1: 843 to 1123 Score:582 bits(1499), Expect:0.0, Method:Compositional matrix adjust., Identities:276/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21029.1 Length: 1123 Range 1: 843 to 1123 Score:580 bits(1496), Expect:0.0, Method:Compositional matrix adjust., Identities:275/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLP+IVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QWY12945.1 Length: 1123 Range 1: 843 to 1123 Score:580 bits(1495), Expect:0.0, Method:Compositional matrix adjust., Identities:275/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLP+IVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21035.1 Length: 1123 Range 1: 843 to 1123 Score:580 bits(1495), Expect:0.0, Method:Compositional matrix adjust., Identities:276/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSD QYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDSQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21058.1 Length: 1123 Range 1: 843 to 1123 Score:579 bits(1493), Expect:0.0, Method:Compositional matrix adjust., Identities:275/281(98%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGP Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPT 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QWY12963.1 Length: 1123 Range 1: 843 to 1123 Score:579 bits(1492), Expect:0.0, Method:Compositional matrix adjust., Identities:275/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >polymerase, partial [Feline immunodeficiency virus] Sequence ID: AAB09310.1 Length: 1123 Range 1: 843 to 1123 Score:578 bits(1491), Expect:0.0, Method:Compositional matrix adjust., Identities:274/281(98%), Positives:277/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETA+CTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETAECTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLG+MAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGKMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QWY12951.1 Length: 1123 Range 1: 843 to 1123 Score:578 bits(1489), Expect:0.0, Method:Compositional matrix adjust., Identities:274/281(98%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLG+MAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGKMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRR IRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRQIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21141.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21147.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1488), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVA+HVESG LWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAIHVESGLLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKTWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKL+MQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLLMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21052.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1487), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21081.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1487), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21068.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1487), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21040.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1487), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21105.1 Length: 1123 Range 1: 843 to 1123 Score:577 bits(1486), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCT+KALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTIKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21093.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21123.1 Length: 1123 Range 1: 843 to 1123 Score:576 bits(1485), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLP+IVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21046.1 Length: 1123 Range 1: 843 to 1123 Score:576 bits(1485), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKTWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK ++WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTRQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21099.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1482), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:275/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IP KLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPHKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21075.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1482), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21005.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21011.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1481), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: ASU11158.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ20977.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ20993.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ20999.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21017.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1481), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21153.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1481), Expect:0.0, Method:Compositional matrix adjust., Identities:272/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLL+YMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLDYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ20987.1 Length: 1123 Range 1: 843 to 1123 Score:575 bits(1481), Expect:0.0, Method:Compositional matrix adjust., Identities:273/281(97%), Positives:276/281(98%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21111.1 Length: 1123 Range 1: 843 to 1123 Score:572 bits(1475), Expect:0.0, Method:Compositional matrix adjust., Identities:271/281(96%), Positives:275/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 NFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 SNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21087.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21117.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QWY12957.1 Length: 1123 Range 1: 843 to 1123 Score:572 bits(1474), Expect:0.0, Method:Compositional matrix adjust., Identities:271/281(96%), Positives:275/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 NFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 963 SNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLGRMAPYELYIQQESLRIQDYFS IPQKLMMQW+YYKDQK K+WKGPM Sbjct 1023 ALYCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKTKQWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRH+RRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHVRRVPEPCTLPEGDE 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABD16378.1 Length: 1086 Range 1: 806 to 1086 Score:562 bits(1448), Expect:0.0, Method:Compositional matrix adjust., Identities:265/281(94%), Positives:275/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLP+IVAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 806 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKIVAEEIKRKCPLCRIRGEQVGGQLKIGP 865 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVAVHVESGFLWAQ+IPQETADCTVKAL+QLI AHN+TELQTDNG Sbjct 866 GIWQMDCTHFNGKIIIVAVHVESGFLWAQVIPQETADCTVKALMQLISAHNITELQTDNG 925 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQK+EGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL Sbjct 926 PNFKNQKIEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 985 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 AL+CLNFKQRGRLG MAPYELY+QQESLRIQDYFS IPQKL MQW+YYKDQKDKKWKGPM Sbjct 986 ALYCLNFKQRGRLGGMAPYELYMQQESLRIQDYFSQIPQKLQMQWVYYKDQKDKKWKGPM 1045 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLK+EE+G FLVPRRHIRRVPEPCTLPEGDE Sbjct 1046 RVEYWGQGSVLLKNEERGYFLVPRRHIRRVPEPCTLPEGDE 1086 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21129.1 Length: 1123 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QRZ21135.1 Length: 1123 Range 1: 843 to 1123 Score:555 bits(1431), Expect:0.0, Method:Compositional matrix adjust., Identities:259/281(92%), Positives:273/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFN+PRIVAEEIKRKCPLCRIRGEQV G+LKI P Sbjct 843 SSWVDRIEEAELNHEKFHSDPQYLRTEFNIPRIVAEEIKRKCPLCRIRGEQVEGKLKIGP 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHFNGKIIIVA+HVESG LWAQIIPQETADCT+KA++QL+ HNVTE+QTDNG Sbjct 903 GIWQMDCTHFNGKIIIVAIHVESGLLWAQIIPQETADCTLKAIMQLVSTHNVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQK+EGLL+YMGIKHKLGIPGNPQSQALVENAN+TLKVWIQKFLPETTSLDNALAL Sbjct 963 PNFKNQKIEGLLSYMGIKHKLGIPGNPQSQALVENANSTLKVWIQKFLPETTSLDNALAL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGRLG+MAPYELY QQESLRIQDYFS +PQKLMMQW+YYKDQKDKKWKGPM Sbjct 1023 ALHCLNFKQRGRLGKMAPYELYTQQESLRIQDYFSQLPQKLMMQWVYYKDQKDKKWKGPM 1082 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHIRRVPEPCTLPEGDE Sbjct 1083 RVEYWGQGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE 1123 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: AAT12494.1 Length: 1124 Range 1: 844 to 1124 Score:539 bits(1388), Expect:0.0, Method:Compositional matrix adjust., Identities:252/281(90%), Positives:265/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWV+RIEEAE+NHEKFHSD QYLRTEF LPR+VAEEIKRKCPLCRIRGEQVGGQLKI P Sbjct 844 SSWVERIEEAEINHEKFHSDSQYLRTEFKLPRMVAEEIKRKCPLCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTHFN KII+VA+HVESGFLWAQIIPQETADCTVKA++QL+ AHNVTELQTDNG Sbjct 904 GIWQVDCTHFNNKIILVAIHVESGFLWAQIIPQETADCTVKAIMQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF+NQKMEGLLNYMGIKHK GIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 964 PNFRNQKMEGLLNYMGIKHKFGIPGNPQSQALVENANNTLKCWIQKFLPETTSLDNALAL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGR+G MAPYEL QQESLRIQDYFS IP KL QW+YYKDQKDK WKGPM Sbjct 1024 ALHCLNFKQRGRIGGMAPYELLTQQESLRIQDYFSQIPSKLQSQWIYYKDQKDKNWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEE+G FLVPRRHIRRVPEPCTLPEGDE Sbjct 1084 RVEYWGQGSVLLKDEERGYFLVPRRHIRRVPEPCTLPEGDE 1124 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AWA45280.1 Length: 996 Range 1: 716 to 996 Score:534 bits(1375), Expect:2e-180, Method:Compositional matrix adjust., Identities:243/281(86%), Positives:268/281(95%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSW+D++EEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 716 SSWIDKVEEAEINHEKFHSDPQYLRTEFNLPKVVAEEIRRKCPVCRIRGEQVGGQLKIGP 775 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+VA+HVESG++WAQ+I QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 776 GIWQMDCTHFDGKIILVAIHVESGYIWAQVISQETADCTVKAVLQLLSAHNVTELQTDNG 835 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWI+KFLPETTSLDNALAL Sbjct 836 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIRKFLPETTSLDNALAL 895 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+HCLNFKQRGR+G MAPYEL QQESLRIQDYFS +PQKL QW+YYKDQKDKKWKGPM Sbjct 896 AVHCLNFKQRGRIGGMAPYELLAQQESLRIQDYFSKMPQKLQAQWIYYKDQKDKKWKGPM 955 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHI+RVPEPC LPEGDE Sbjct 956 RVEYWGQGSVLLKDEEKGYFLVPRRHIKRVPEPCALPEGDE 996 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: NP_040973.1 Length: 996 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: AAB59937.1 Length: 996 Range 1: 716 to 996 Score:533 bits(1373), Expect:3e-180, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:267/281(95%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 716 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 775 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 776 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 835 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWI+KFLPETTSLDNAL+L Sbjct 836 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIRKFLPETTSLDNALSL 895 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+H LNFK+RGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 896 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 955 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRHIRRVPEPC LPEGDE Sbjct 956 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 996 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19028.1 Length: 1124 >pol polyprotein (NH2-terminus uncertain), partial [Feline immunodeficiency virus] Sequence ID: AAA43076.1 Length: 1124 Range 1: 844 to 1124 Score:533 bits(1374), Expect:5e-179, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:265/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAE NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 844 SSWVDRIEEAETNHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+VA+HVESG++WAQII QETADCTVKA+LQL+ AH VTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVAIHVESGYIWAQIISQETADCTVKAVLQLLSAHIVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N TLKVW+ KFLPETTSLDNALAL Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPETTSLDNALAL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+HCLNFKQRGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 AVHCLNFKQRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRH++RVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHVKRVPEPCALPEGDE 1124 >POL [Feline immunodeficiency virus] Sequence ID: CAA40318.1 Length: 1124 Range 1: 844 to 1124 Score:533 bits(1373), Expect:9e-179, Method:Compositional matrix adjust., Identities:246/281(88%), Positives:267/281(95%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 844 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCT+F+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 904 GIWQMDCTYFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+H LNFK+RGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRHIRRVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 1124 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: AAM13444.1 Length: 1130 Range 1: 850 to 1130 Score:532 bits(1371), Expect:2e-178, Method:Compositional matrix adjust., Identities:249/281(89%), Positives:264/281(93%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWV+RIEEAE+NHEKFHSD QYLRTEF LPR+VAEEIKRKC LCRIRGEQVGGQLKI P Sbjct 850 SSWVERIEEAEINHEKFHSDSQYLRTEFKLPRMVAEEIKRKCALCRIRGEQVGGQLKIGP 909 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTHFN +II+VA+HVESGFLWAQIIPQETADCTVKA++QL+ A+NVTELQTDNG Sbjct 910 GIWQVDCTHFNNEIILVAIHVESGFLWAQIIPQETADCTVKAIMQLLSAYNVTELQTDNG 969 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF+NQKMEGLLNYMGIKHK GIPGNPQSQALVENANNTLK WIQKFLPETTSLDNALAL Sbjct 970 PNFRNQKMEGLLNYMGIKHKFGIPGNPQSQALVENANNTLKCWIQKFLPETTSLDNALAL 1029 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 ALHCLNFKQRGR+G MAPYEL QQESLRIQDYFS IP KL QW+YYKDQKDK WKGPM Sbjct 1030 ALHCLNFKQRGRIGGMAPYELLTQQESLRIQDYFSQIPSKLQSQWIYYKDQKDKNWKGPM 1089 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEE+G FLVPRRHIRRVPEPCTLPEGDE Sbjct 1090 RVEYWGQGSVLLKDEERGYFLVPRRHIRRVPEPCTLPEGDE 1130 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 844 to 1124 Score:532 bits(1371), Expect:2e-178, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:266/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRI GEQVGGQLKI P Sbjct 844 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+H LNFK+RGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRHIRRVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 1124 >pol polyprotein, partial [Feline immunodeficiency virus] Sequence ID: QKI31773.1 Length: 1124 Range 1: 844 to 1124 Score:532 bits(1370), Expect:3e-178, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:265/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSWVDRIEEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 844 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+VA+HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVAIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG LNYMG+KHK GIPGNPQSQALVEN N TLK WIQKFLPETTSL+NALAL Sbjct 964 PNFKNQKMEGALNYMGVKHKFGIPGNPQSQALVENVNQTLKAWIQKFLPETTSLENALAL 1023 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+HCLNFKQRGR+G MAPYEL QQESLRIQ++FS IPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 AVHCLNFKQRGRIGGMAPYELLAQQESLRIQEFFSKIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 RVEYWGQGSVLLKDEEKG FLVPRRHI+RVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLVPRRHIKRVPEPCALPEGDE 1124 >polymerase, partial [Feline immunodeficiency virus] Sequence ID: ACX54438.1 Length: 996 Range 1: 716 to 996 Score:457 bits(1175), Expect:1e-150, Method:Compositional matrix adjust., Identities:205/281(73%), Positives:247/281(87%), Gaps:0/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++R+EEAE++HEKFHSDPQ+LRTEF LP++VAEEIKRKCPLC +RGEQ+ G+LK+ P Sbjct 716 ASWMERLEEAEIHHEKFHSDPQFLRTEFGLPKLVAEEIKRKCPLCIVRGEQIPGKLKMGP 775 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTH + KII+VAVHVESG++WAQI+PQETADCT+KALLQLI HNVTE+Q+DNG Sbjct 776 GIWQMDCTHMDTKIILVAVHVESGYIWAQILPQETADCTIKALLQLISEHNVTEIQSDNG 835 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF NQKM+G L ++GIKHK GIPGNPQSQALVEN N TLKVW+QKFLPE +S NALAL Sbjct 836 PNFNNQKMDGCLAFLGIKHKFGIPGNPQSQALVENVNQTLKVWVQKFLPEVSSFQNALAL 895 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 A+ LNFKQRGR+G M+ YEL +QQESLRIQ+ FS +P K +W+YYKD++DK+WKGP+ Sbjct 896 AILSLNFKQRGRIGGMSAYELLVQQESLRIQEMFSTLPGKDTPKWIYYKDKRDKEWKGPV 955 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + YWGQG+VL+KD KG FLVPRR +RRVPEPCTLPEGDE Sbjct 956 QAAYWGQGAVLIKDPVKGYFLVPRRQVRRVPEPCTLPEGDE 996 >pol protein [Feline immunodeficiency virus] Sequence ID: ABX25835.1 Length: 1148 Range 1: 868 to 1146 Score:410 bits(1054), Expect:2e-131, Method:Compositional matrix adjust., Identities:199/279(71%), Positives:237/279(84%), Gaps:1/279(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D+IEEAELNHEKFHSDP+YLRTEF LP+ VAEEIK KCPLC I+GEQ G+LKI P Sbjct 868 ASWIDKIEEAELNHEKFHSDPEYLRTEFGLPKQVAEEIKXKCPLCIIQGEQPMGKLKIGP 927 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ DCTH GKII+VAV+ ESG++WA+I+PQE A+ TVKA LQLI H+VTE+QTDNG Sbjct 928 GIWQADCTHLEGKIILVAVNTESGYIWAKILPQENAETTVKAFLQLISEHHVTEIQTDNG 987 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N KMEG++ ++GIKHK GIPGNPQSQALVEN N TLK WI KF E T+L+ ALAL Sbjct 988 PNFNNSKMEGMVGFLGIKHKFGIPGNPQSQALVENTNKTLKRWIDKFKGEVTTLEAALAL 1047 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQK-LMMQWLYYKDQKDKKWKGP 239 A++ LNFKQRGR+G ++PYEL IQQES RI+DYFS IP K L W+YYKD++DK+WKGP Sbjct 1048 AVYALNFKQRGRIGGISPYELLIQQESERIKDYFSQIPTKNLKNSWIYYKDRRDKEWKGP 1107 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPE 278 ++VEYWGQG+VL+K E+G L+PRRHIRRVPEPCTLPE Sbjct 1108 IQVEYWGQGAVLVKHPEQGYILIPRRHIRRVPEPCTLPE 1146 >pol protein [Feline immunodeficiency virus] Sequence ID: ABX25830.1 Length: 1148 Range 1: 868 to 1146 Score:409 bits(1050), Expect:1e-130, Method:Compositional matrix adjust., Identities:200/279(72%), Positives:239/279(85%), Gaps:1/279(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D+IEEAE+NHEKFHSDP+YLRTEF LP+ VAEEIKRKCPLC ++GEQ G+L+I P Sbjct 868 ASWIDKIEEAEINHEKFHSDPEYLRTEFGLPKQVAEEIKRKCPLCIVQGEQPMGKLRIGP 927 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH +GKII+VAV+ ESG++WA+II QETA+ TVK LLQLI H+VTE+QTDNG Sbjct 928 GIWQIDCTHLDGKIILVAVNTESGYIWARIILQETAENTVKLLLQLISEHHVTEIQTDNG 987 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N KMEG++ ++GIKHK GIPGNPQSQALVEN N TLK WI KF E T+LD ALAL Sbjct 988 PNFNNSKMEGMVGFLGIKHKFGIPGNPQSQALVENTNKTLKRWIAKFRQEVTTLDAALAL 1047 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQK-LMMQWLYYKDQKDKKWKGP 239 A++ LNFKQRGR+G ++PYEL IQQES RI+DYFS IP K L W+YYKD+KDK+WKGP Sbjct 1048 AVYALNFKQRGRIGGISPYELLIQQESERIKDYFSQIPIKNLKNSWIYYKDRKDKEWKGP 1107 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPE 278 +VEYWGQG+VL+K E+G L+PRRHIRRVPEPCTLPE Sbjct 1108 TQVEYWGQGAVLVKHPEQGYILIPRRHIRRVPEPCTLPE 1146 >pol protein [Feline immunodeficiency virus] Sequence ID: AAU20798.1 Length: 1150 Range 1: 870 to 1148 Score:405 bits(1041), Expect:2e-129, Method:Compositional matrix adjust., Identities:198/279(71%), Positives:237/279(84%), Gaps:1/279(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IEEAE+NHEKFHSDP++LRTEF LP+ VAEEIKRKCPLC ++GEQV G+LK+ P Sbjct 870 ASWMNNIEEAEINHEKFHSDPEFLRTEFGLPKQVAEEIKRKCPLCIVQGEQVMGKLKVGP 929 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH GKII+VAV+ ESG++WA+IIPQETAD TVK LLQLI H+VTELQ+DNG Sbjct 930 GIWQIDCTHLEGKIILVAVNTESGYIWARIIPQETADMTVKYLLQLISEHHVTELQSDNG 989 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N K+EG+ ++GIKHK GIPGNPQSQALVEN N LK WI+KF E T+LD ALAL Sbjct 990 PNFNNAKVEGMTGFLGIKHKYGIPGNPQSQALVENTNRMLKEWIKKFRGEVTTLDAALAL 1049 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 AL+ LNFKQRGR+GR++PYEL IQQES RI+DYFS IP + W+YYKD++DK+WKGP Sbjct 1050 ALYALNFKQRGRIGRISPYELLIQQESDRIRDYFSKIPANNIKNSWIYYKDRRDKEWKGP 1109 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPE 278 +VEYWGQG+VL+K E G L+PRRHIRRVPEPCTLPE Sbjct 1110 TQVEYWGQGAVLIKHPEHGYMLIPRRHIRRVPEPCTLPE 1148 >Pol polyprotein [Feline immunodeficiency virus] Sequence ID: AAB49923.1 Length: 1150 Range 1: 870 to 1148 Score:405 bits(1041), Expect:3e-129, Method:Compositional matrix adjust., Identities:198/279(71%), Positives:237/279(84%), Gaps:1/279(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IEEAE+NHEKFHSDP++LRTEF LP+ VAEEIKRKCPLC ++GEQV G+LK+ P Sbjct 870 ASWMNNIEEAEINHEKFHSDPEFLRTEFGLPKQVAEEIKRKCPLCIVQGEQVMGKLKVGP 929 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH GKII+VAV+ ESG++WA+IIPQETAD TVK LLQLI H+VTELQ+DNG Sbjct 930 GIWQIDCTHLEGKIILVAVNTESGYIWARIIPQETADMTVKYLLQLISEHHVTELQSDNG 989 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N K+EG+ ++GIKHK GIPGNPQSQALVEN N LK WI+KF E T+LD ALAL Sbjct 990 PNFNNAKVEGMTGFLGIKHKYGIPGNPQSQALVENTNRMLKEWIKKFRGEVTTLDAALAL 1049 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 AL+ LNFKQRGR+GR++PYEL IQQES RI+DYFS IP + W+YYKD++DK+WKGP Sbjct 1050 ALYALNFKQRGRIGRISPYELLIQQESDRIRDYFSKIPANNIKNSWIYYKDRRDKEWKGP 1109 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPE 278 +VEYWGQG+VL+K E G L+PRRHIRRVPEPCTLPE Sbjct 1110 TQVEYWGQGAVLIKHPEHGYMLIPRRHIRRVPEPCTLPE 1148 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63422.1 Length: 1145 Range 1: 855 to 1138 Score:345 bits(885), Expect:1e-106, Method:Compositional matrix adjust., Identities:167/284(59%), Positives:209/284(73%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 855 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTNSGSKGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L LI HNVTE+QTD Sbjct 915 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLDLIQTHNVTEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N TLK W++KF E +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGINHKYGIPLNPQSQALVENINGTLKTWVKKFRSEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA + LN K++G +G M+PYELYI QE+ IQ Y++ I K QW+YYKD KDK W Sbjct 1035 ALATYALNKKRKGNIGSMSPYELYIWQENTLIQQYYANILFKKFGKEQWIYYKDMKDKAW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLVKDSEKGLFLVPNRRIRRVPPPQELEVSD 1138 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69483.1 Length: 1153 Range 1: 863 to 1146 Score:342 bits(878), Expect:1e-105, Method:Compositional matrix adjust., Identities:169/284(60%), Positives:209/284(73%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 863 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTTSGNKGGKLKM 922 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L LI HNVTE+QTD Sbjct 923 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLDLIQTHNVTEIQTD 982 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 983 NGPNFANSRMEGLTAFLGITHKYGIPLNPQSQALVENINNTLKNWIKKFRGEVETLQAAV 1042 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ ++S I K QW+YYKD KDK W Sbjct 1043 ALATFALNKKRKGNIGNMSPYELYIWQENAIIQQHYSNILFKKFGKEQWVYYKDMKDKVW 1102 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1103 KGPIEVLYWGEGSVLVKDSEKGLFLVPNRRIRRVPPPQELEVSD 1146 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37902.1 Length: 1145 Range 1: 855 to 1138 Score:342 bits(877), Expect:2e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIXFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37897.1 Length: 1145 Range 1: 855 to 1138 Score:342 bits(876), Expect:2e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIHHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37981.1 Length: 1145 Range 1: 855 to 1138 Score:342 bits(876), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37907.1 Length: 1145 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37986.1 Length: 1145 Range 1: 855 to 1138 Score:342 bits(876), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37822.1 Length: 1145 Range 1: 855 to 1138 Score:342 bits(876), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37912.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37777.1 Length: 1135 Range 1: 845 to 1128 Score:341 bits(875), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 845 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 904 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 905 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 964 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 965 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1024 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1025 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1084 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1085 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1128 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37971.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37951.1 Length: 1157 Range 1: 867 to 1150 Score:342 bits(876), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 867 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 926 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 927 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 986 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 987 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1046 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1047 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1106 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1107 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1150 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37882.1 Length: 1144 Range 1: 854 to 1137 Score:341 bits(875), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 854 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 914 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 974 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1034 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1094 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1137 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37837.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:3e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37892.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:4e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37877.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:4e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37832.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(875), Expect:4e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37961.1 Length: 1141 Range 1: 851 to 1134 Score:341 bits(874), Expect:4e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 851 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 910 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 911 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 970 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 971 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1030 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1031 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1090 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1091 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41651.1 Length: 1135 Range 1: 853 to 1132 Score:341 bits(874), Expect:4e-105, Method:Compositional matrix adjust., Identities:167/280(60%), Positives:208/280(74%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 853 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTTSGNKGGKLKM 912 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 913 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 973 NGPNFANSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1033 ALATFALNKKRKGNIGSMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1093 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1132 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37926.1 Length: 1143 Range 1: 853 to 1136 Score:341 bits(874), Expect:5e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 853 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 912 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 913 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 973 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1033 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1093 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1136 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37817.1 Length: 1142 Range 1: 852 to 1135 Score:341 bits(874), Expect:5e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 852 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 911 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 912 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 971 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 972 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1031 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1032 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1091 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1092 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1135 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37767.1 Length: 1145 Range 1: 855 to 1138 Score:341 bits(874), Expect:5e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAXETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKXW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69489.1 Length: 1153 Range 1: 863 to 1142 Score:341 bits(874), Expect:5e-105, Method:Compositional matrix adjust., Identities:167/280(60%), Positives:208/280(74%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 863 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTTSGNKGGKLKM 922 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 923 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 982 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 983 NGPNFANSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1042 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1043 ALATFALNKKRKGNIGSMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1102 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1103 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1142 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37867.1 Length: 1148 Range 1: 858 to 1141 Score:341 bits(874), Expect:5e-105, Method:Compositional matrix adjust., Identities:166/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 858 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 917 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 918 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 977 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 978 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1037 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1038 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1097 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1098 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1141 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37772.1 Length: 1135 Range 1: 845 to 1128 Score:340 bits(873), Expect:5e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:212/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 845 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 904 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ H V E+QTD Sbjct 905 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHXVVEIQTD 964 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 965 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1024 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKL--MMQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K M QW+YYKD KDK+W Sbjct 1025 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGMKQWIYYKDIKDKEW 1084 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1085 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1128 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41652.1 Length: 1135 Range 1: 853 to 1132 Score:340 bits(873), Expect:5e-105, Method:Compositional matrix adjust., Identities:167/280(60%), Positives:208/280(74%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 853 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTTSGNKGGKLKM 912 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 913 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 973 NGPNFANSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1033 ALATFALNKKRKGNIGSMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1093 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1132 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69477.1 Length: 1153 Range 1: 863 to 1142 Score:341 bits(874), Expect:6e-105, Method:Compositional matrix adjust., Identities:167/280(60%), Positives:208/280(74%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 863 SWMDNLEQAEIEHEKFHTDEKTLQDMFGLPRIVASEILQKCTICRMTGTTSGNKGGKLKM 922 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 923 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 982 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 983 NGPNFANSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1042 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1043 ALATFALNKKRKGNIGSMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1102 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1103 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1142 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37807.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(873), Expect:6e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37872.1 Length: 1148 Range 1: 858 to 1141 Score:340 bits(873), Expect:7e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 858 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 917 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 918 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 977 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 978 NGPNFANSRMEGLTTFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1037 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1038 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1097 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1098 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1141 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37936.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(873), Expect:7e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGTGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37976.1 Length: 1146 Range 1: 856 to 1139 Score:340 bits(872), Expect:8e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 856 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 916 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGIXHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1036 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1096 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QIG38001.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(872), Expect:9e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37931.1 Length: 1146 Range 1: 856 to 1139 Score:340 bits(872), Expect:9e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 856 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 916 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1036 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1096 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37753.1 Length: 1133 Range 1: 843 to 1126 Score:340 bits(871), Expect:9e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 843 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 902 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 903 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 962 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 963 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1022 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1023 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGAKQWIYYKDIKDKVW 1082 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1083 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1126 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37946.1 Length: 1145 >pol protein, partial [Puma lentivirus] Sequence ID: QIG38006.1 Length: 1145 >pol protein, partial [Puma lentivirus] Sequence ID: QIG38011.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(872), Expect:9e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37996.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(872), Expect:9e-105, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37862.1 Length: 1137 Range 1: 847 to 1130 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 847 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 906 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 907 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 966 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 967 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1026 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1027 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1086 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1087 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1130 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37792.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37802.1 Length: 1150 Range 1: 860 to 1143 Score:340 bits(872), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 860 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 919 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 920 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 979 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 980 NGPNFANSRMEGLTAFLGIHHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1039 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1040 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1099 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1100 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1143 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37941.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37827.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37787.1 Length: 1146 Range 1: 856 to 1139 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 856 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 916 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1036 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1096 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37857.1 Length: 1145 Range 1: 855 to 1138 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37842.1 Length: 1154 Range 1: 864 to 1147 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 864 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 923 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 924 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 983 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 984 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1043 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1044 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1103 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1104 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1147 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37852.1 Length: 1147 Range 1: 857 to 1140 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 857 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 916 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 917 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 976 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 977 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1036 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1037 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1096 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1097 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1140 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37847.1 Length: 1149 Range 1: 859 to 1142 Score:340 bits(871), Expect:1e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 859 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 918 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 919 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 978 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 979 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1038 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1039 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1098 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1099 KGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1142 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37762.1 Length: 1127 Range 1: 837 to 1120 Score:339 bits(869), Expect:2e-104, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 837 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 896 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 897 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 956 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 957 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1016 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1017 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1076 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1077 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1120 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37966.1 Length: 1141 Range 1: 851 to 1134 Score:339 bits(869), Expect:2e-104, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 851 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 910 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 911 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 970 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 971 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1030 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1031 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1090 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1091 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1134 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37921.1 Length: 1145 Range 1: 855 to 1138 Score:339 bits(869), Expect:3e-104, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37991.1 Length: 1145 Range 1: 855 to 1138 Score:339 bits(869), Expect:3e-104, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37744.1 Length: 1145 Range 1: 855 to 1138 Score:338 bits(868), Expect:3e-104, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:209/284(73%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 AL LN K +G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALXTFALNKKXKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37812.1 Length: 1145 Range 1: 855 to 1138 Score:338 bits(868), Expect:4e-104, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:211/284(74%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37887.1 Length: 1146 Range 1: 856 to 1139 Score:337 bits(864), Expect:1e-103, Method:Compositional matrix adjust., Identities:163/284(57%), Positives:210/284(73%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 856 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 916 GPGVWQVDCTHLEGQIILVAINVESGLLWTKVLKQETAKETVLAVLELVQTHNVVEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KD W Sbjct 1036 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDXVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL++D E+G+FLVP R IRRVP P L D Sbjct 1096 KGPVEVLYWGEGSVLIRDPERGLFLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69495.1 Length: 1153 Range 1: 863 to 1146 Score:337 bits(864), Expect:1e-103, Method:Compositional matrix adjust., Identities:165/284(58%), Positives:207/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D +E+AE+ H+KFH+D + L+ F LPRIVA +I +KC +CR+ G G G+LK+ Sbjct 863 SWMDNLEQAEIEHKKFHTDEKTLQDMFGLPRIVASKILQKCIICRMTGTNSGSKGGKLKM 922 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L LI HNVTE+QTD Sbjct 923 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLDLIQTHNVTEIQTD 982 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NG NF N +MEGL ++GI HK GIP NPQSQALVEN N TLK WI+KF E +L A+ Sbjct 983 NGSNFANSRMEGLTAFLGINHKYGIPLNPQSQALVENINGTLKTWIKKFRSEVETLQAAV 1042 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y++ I K QW+YYKD KDK W Sbjct 1043 ALATFALNKKRKGNIGGMSPYELYIWQENTLIQQYYANILFKKFGKEQWIYYKDMKDKAW 1102 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1103 KGPVEVLYWGEGSVLIKDSEKGLFLVPNRRIRRVPPPQELEVSD 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63392.1 Length: 1145 Range 1: 855 to 1131 Score:332 bits(852), Expect:6e-102, Method:Compositional matrix adjust., Identities:166/277(60%), Positives:208/277(75%), Gaps:5/277(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGG---QLKI 58 SW+D IE+AEL HEKFH+D + L+ F +PR+VA EI ++C +CR+ G G +LK+ Sbjct 855 SWMDNIEKAELEHEKFHTDEKSLQELFGIPRVVANEILQRCTICRMTGSGGGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+I++VA++VES +W +I+ QETA TV ALL+LI HNV E+QTD Sbjct 915 GPGIWQIDCTHLEGQILLVAINVESSLIWTKILKQETAKETVLALLELIQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++MGI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 975 NGPNFANSRMEGLTSFMGINHKFGIPLNPQSQALVENINNTLKQWIKKFRQEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKL-MMQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I QK QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNSIQQYYSNIIFQKFGKEQWIYYKDSKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P Sbjct 1095 KGPVPVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPP 1131 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37739.1 Length: 1131 Range 1: 841 to 1124 Score:328 bits(842), Expect:1e-100, Method:Compositional matrix adjust., Identities:161/284(57%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 841 SWMDYIEQAEIEHEKFHTDEKILQEKFGLPKVVANEILQKCTICRMTGLGSGNRGGKLKM 900 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW ++ TV A+L+L+ HNV E+QTD Sbjct 901 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLXXXXXXXXTVLAVLELVQTHNVVEIQTD 960 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 961 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1020 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1021 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1080 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL KD EKG+FL P R IRRVP P L D Sbjct 1081 KGPVEVLYWGEGSVLXKDPEKGLFLXPNRRIRRVPPPQELEVSD 1124 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37797.1 Length: 1145 Range 1: 855 to 1138 Score:327 bits(838), Expect:6e-100, Method:Compositional matrix adjust., Identities:164/284(58%), Positives:209/284(73%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 855 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 914 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VES L +++ QETA TV A+L+L+ HNV E+QTD Sbjct 915 GPGVWQVDCTHLEGQIILVAINVESXLLXTKLLKQETAKETVLAVLELVQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ Sbjct 975 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1095 KGPVEVLYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1138 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04893.1 Length: 1145 Range 1: 855 to 1134 Score:324 bits(831), Expect:6e-99, Method:Compositional matrix adjust., Identities:163/280(58%), Positives:206/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PGIWQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGIWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04905.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(829), Expect:1e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:206/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41653.1 Length: 1135 Range 1: 853 to 1132 Score:323 bits(829), Expect:1e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:205/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 853 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 912 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 913 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 973 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1033 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1093 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1132 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69501.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(829), Expect:1e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:205/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41654.1 Length: 1135 Range 1: 853 to 1132 Score:323 bits(828), Expect:1e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:205/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 853 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 912 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 913 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 973 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1033 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1093 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1132 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04888.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(829), Expect:2e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:206/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04879.1 Length: 1145 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04885.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(829), Expect:2e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:206/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63397.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(828), Expect:2e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:206/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVIEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69507.1 Length: 1145 Range 1: 855 to 1134 Score:323 bits(828), Expect:2e-98, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:205/280(73%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ H+KFH+D + L+ +F LPR+VA EI +KC +CR+ G G + Sbjct 855 SWMDYIEQAEIEHDKFHTDEKTLQEKFGLPRVVANEILQKCTVCRMTGTGGGNKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV ALL LI HNV E+QTD Sbjct 915 GPGVWQIDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVMALLDLIQTHNVVEIQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL N++GI+HK GIP NPQSQALVEN N+TLK WI+KF E +L A+ Sbjct 975 NGPNFVNSRMEGLTNFLGIQHKYGIPLNPQSQALVENINSTLKSWIKKFRTEVETLQAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M+PYEL+I QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1035 ALATFALNKKRKGNIGGMSPYELHIWQENTLIQQYYSNIIFKKFGKEQWIYYKDIKDKAW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP+ V YWG+GSVL+K EKG+FLVP R IRRVP P L Sbjct 1095 KGPVEVLYWGEGSVLIKTPEKGLFLVPNRRIRRVPPPQEL 1134 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63347.1 Length: 1142 Range 1: 856 to 1135 Score:319 bits(817), Expect:7e-97, Method:Compositional matrix adjust., Identities:160/280(57%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGYHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTHF G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHFEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTTFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQEL 1135 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63362.1 Length: 1142 Range 1: 856 to 1135 Score:319 bits(817), Expect:7e-97, Method:Compositional matrix adjust., Identities:160/280(57%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGYHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTHF G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHFEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTTFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQEL 1135 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69447.1 Length: 1146 Range 1: 856 to 1139 Score:318 bits(816), Expect:1e-96, Method:Compositional matrix adjust., Identities:163/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QETA TV A+L+L+ HNV E+QTD Sbjct 916 GPGTWQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELVQTHNVKEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPN N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNSSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QES IQ ++S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQESESIQQHYSNLLFKKFGQEQWVYYKDLKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1096 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69453.1 Length: 1146 Range 1: 856 to 1139 Score:318 bits(815), Expect:1e-96, Method:Compositional matrix adjust., Identities:162/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 856 SWMDNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++ A+++ES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 916 GPGTWQIDCTHIEGQILLAAINIESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENMNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1096 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69442.1 Length: 1146 Range 1: 856 to 1139 Score:318 bits(815), Expect:1e-96, Method:Compositional matrix adjust., Identities:163/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEK H+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 856 SWMDNIEKAEIEHEKLHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 916 GPGTWQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIRKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1096 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63432.1 Length: 1142 Range 1: 856 to 1135 Score:318 bits(815), Expect:1e-96, Method:Compositional matrix adjust., Identities:159/280(57%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGYHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTHF G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHFEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTTFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELY+ QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYVWQENESIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQEL 1135 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04897.1 Length: 1146 Range 1: 856 to 1139 Score:318 bits(814), Expect:2e-96, Method:Compositional matrix adjust., Identities:161/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+EN NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIENTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41649.1 Length: 1136 Range 1: 854 to 1133 Score:318 bits(814), Expect:2e-96, Method:Compositional matrix adjust., Identities:161/280(58%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 854 SWMDNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++ A+++ES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 914 GPGTWQIDCTHIEGQILLAAINIESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 974 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENMNNTLKNWIKKFRSEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1034 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L Sbjct 1094 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQEL 1133 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41647.1 Length: 1136 Range 1: 854 to 1133 Score:317 bits(813), Expect:3e-96, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEK H+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 854 SWMDNIEKAEIEHEKLHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 914 GPGTWQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 974 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIRKFRSEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1034 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L Sbjct 1094 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQEL 1133 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41648.1 Length: 1136 Range 1: 854 to 1133 Score:317 bits(812), Expect:3e-96, Method:Compositional matrix adjust., Identities:162/280(58%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 854 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQGGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QETA TV A+L+L+ HNV E+QTD Sbjct 914 GPGTWQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELVQTHNVKEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPN N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 974 NGPNSSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QES IQ ++S + K QW+YYKD KDK W Sbjct 1034 ALAVFALNKKRKGNIGGRTPYELYIWQESESIQQHYSNLLFKKFGQEQWVYYKDLKDKVW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L Sbjct 1094 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQEL 1133 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04916.1 Length: 1146 Range 1: 856 to 1139 Score:317 bits(811), Expect:5e-96, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPRQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04904.1 Length: 1146 Range 1: 856 to 1139 Score:317 bits(811), Expect:5e-96, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+EN NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIENTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63402.1 Length: 1146 Range 1: 856 to 1139 Score:317 bits(811), Expect:5e-96, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04917.1 Length: 1146 Range 1: 856 to 1139 Score:317 bits(811), Expect:6e-96, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26781.1 Length: 1146 Range 1: 856 to 1139 Score:316 bits(810), Expect:6e-96, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRIVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04915.1 Length: 1146 Range 1: 856 to 1139 Score:316 bits(810), Expect:7e-96, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04912.1 Length: 1146 Range 1: 856 to 1139 Score:316 bits(810), Expect:7e-96, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+EN NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIENTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63357.1 Length: 1142 Range 1: 856 to 1139 Score:316 bits(809), Expect:1e-95, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04883.1 Length: 1146 Range 1: 856 to 1139 Score:316 bits(809), Expect:1e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:206/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HKLGIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKLGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63377.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(808), Expect:1e-95, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63382.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(808), Expect:1e-95, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63342.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(808), Expect:1e-95, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGSEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63412.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04873.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(808), Expect:1e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G++++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKIRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKAW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63367.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(808), Expect:1e-95, Method:Compositional matrix adjust., Identities:160/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26779.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(807), Expect:2e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26783.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(807), Expect:2e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63372.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(806), Expect:2e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+L+ HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELLQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04891.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(807), Expect:2e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26782.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(807), Expect:2e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69513.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:2e-95, Method:Compositional matrix adjust., Identities:162/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW++ IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 856 SWMNNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQSGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA+++ES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 916 GPGTWQIDCTHIEGQILLVAINIESHLIWTKILKQETAKETVLAILELIQTHNVIEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL +GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFSNSRMEGLTALLGINHKFGIPLNPQSQALVENINNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1096 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04896.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:2e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVKTLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol polyprotein [Puma lentivirus 14] Sequence ID: YP_009507791.1 Length: 1086 >pol polyprotein [Puma lentivirus 14] Sequence ID: AAA67168.1 Length: 1086 Range 1: 794 to 1074 Score:314 bits(804), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/281(56%), Positives:201/281(71%), Gaps:1/281(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSW+D IE+AE +H+KFHSD YL+ F +PR VAEEI RKCPLC I+GE GQLKI Sbjct 794 SSWMDNIEKAEDDHDKFHSDVVYLKQRFGIPRQVAEEIIRKCPLCMIKGEVSYGQLKIGE 853 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF+ + +E A T A L L + VTE+QTDNG Sbjct 854 GIWQIDCTHLEKLILLVCIQTTSGFVVVYNLKREDAKETGLAFLNLFSQYYVTEIQTDNG 913 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLKVW+ KF T +L+ A+ L Sbjct 914 PNFANERITGICFHFGIKHKKGIPINPQSQALVENFNRTLKVWVDKFKEVTETLEAAVQL 973 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELY+QQES+RIQ+ +S+IP K + W+YYKD+KDK WKGP Sbjct 974 AVHALNHKRKGGLGGITPYELYVQQESIRIQELYSSIPHKFLKDSWIYYKDRKDKLWKGP 1033 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 +V YWG+G+VL+KDE L+PRR IRRVP P L + D Sbjct 1034 TQVYYWGEGAVLIKDENNKYLLIPRRRIRRVPAPKDLTQED 1074 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26780.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63352.1 Length: 1142 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+V EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVTNEILQKCTICRMTGTNSGYHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +WA+I+ QE A TV A+L+L+ HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWARILKQENAKETVLAILELMQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRSEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04882.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63387.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04884.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04909.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04894.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04881.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04895.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04899.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04907.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26784.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04872.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04906.1 Length: 1146 Range 1: 856 to 1139 Score:315 bits(806), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04898.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04910.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:159/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRILRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDIKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04911.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04874.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04914.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04892.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04903.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04902.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63427.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04918.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04876.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:4e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63407.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:4e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04901.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(805), Expect:4e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41655.1 Length: 1136 Range 1: 854 to 1133 Score:314 bits(804), Expect:4e-95, Method:Compositional matrix adjust., Identities:161/280(58%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW++ IE+AE+ HEKFH+D + L+ F LPRIVA EI +KC +CR+ G G G+LK+ Sbjct 854 SWMNNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQKCTICRMTGTNSGHQSGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA+++ES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 914 GPGTWQIDCTHIEGQILLVAINIESHLIWTKILKQETAKETVLAILELIQTHNVIEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL +GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 974 NGPNFSNSRMEGLTALLGINHKFGIPLNPQSQALVENINNTLKNWIKKFRSEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ ++S + K QW+YYKD KDK W Sbjct 1034 ALAVFALNKKRKGNIGGRTPYELYIWQENESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L Sbjct 1094 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQEL 1133 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04900.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(804), Expect:4e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63437.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(804), Expect:5e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:203/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIEGTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04887.1 Length: 1146 Range 1: 856 to 1139 Score:314 bits(804), Expect:5e-95, Method:Compositional matrix adjust., Identities:158/284(56%), Positives:203/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIEGTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63417.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04889.1 Length: 1146 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04890.1 Length: 1146 Range 1: 856 to 1139 Score:313 bits(802), Expect:9e-95, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L L+ HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLMQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04913.1 Length: 1146 Range 1: 856 to 1139 Score:313 bits(802), Expect:9e-95, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L L+ HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLMQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04880.1 Length: 1146 Range 1: 856 to 1139 Score:313 bits(801), Expect:1e-94, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP +PQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLDPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04908.1 Length: 1146 Range 1: 856 to 1139 Score:313 bits(801), Expect:1e-94, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENVKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM--QWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04877.1 Length: 1146 Range 1: 856 to 1139 Score:313 bits(801), Expect:1e-94, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLRQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAI--PQKLMMQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + + QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFTKFGNDQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69459.1 Length: 1146 Range 1: 856 to 1139 Score:312 bits(799), Expect:3e-94, Method:Compositional matrix adjust., Identities:161/284(57%), Positives:205/284(72%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI ++C +CR+ G G G+LK+ Sbjct 856 SWMDNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQRCTICRMTGTNSGHQGGKLKM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG Q+DCTH G+I++VA++VES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 916 GPGTRQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 976 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRLEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI Q++ IQ ++S + K QW+YYKD KDK W Sbjct 1036 ALAVFALNKKRKGNIGGRTPYELYIWQKNESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L D Sbjct 1096 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41650.1 Length: 1136 Range 1: 854 to 1133 Score:311 bits(798), Expect:4e-94, Method:Compositional matrix adjust., Identities:160/280(57%), Positives:204/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPRIVA EI ++C +CR+ G G G+LK+ Sbjct 854 SWMDNIEKAEIEHEKFHTDERTLQDMFGLPRIVANEILQRCTICRMTGTNSGHQGGKLKM 913 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG Q+DCTH G+I++VA++VES +W +I+ QETA TV A+L+LI HNV E+QTD Sbjct 914 GPGTRQIDCTHIEGQILLVAINVESNLIWTKILKQETAKETVLAILELIQTHNVKEIQTD 973 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN NNTLK WI+KF E +L A+ Sbjct 974 NGPNFSNSRMEGLTAFLGITHKFGIPLNPQSQALVENTNNTLKNWIKKFRLEVETLQAAV 1033 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI Q++ IQ ++S + K QW+YYKD KDK W Sbjct 1034 ALAVFALNKKRKGNIGGRTPYELYIWQKNESIQQHYSNLLFKKFGQEQWIYYKDLKDKVW 1093 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+FLVP R IRRVP P L Sbjct 1094 KGPRQVIYWGEGSVLIKDPEKGLFLVPNRRIRRVPPPQEL 1133 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69471.1 Length: 1146 Range 1: 856 to 1139 Score:311 bits(798), Expect:4e-94, Method:Compositional matrix adjust., Identities:156/284(55%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW++ IE+AE+ HEKFH+D + L+ F LP++VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMNNIEKAEIEHEKFHTDEKTLQDMFGLPKVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABB29307.1 Length: 1145 Range 1: 855 to 1131 Score:311 bits(798), Expect:4e-94, Method:Compositional matrix adjust., Identities:155/277(56%), Positives:200/277(72%), Gaps:5/277(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ HEKFH+D + L+ F +P++VA EI +KC +CR+ G G + Sbjct 855 SWMDNIEKAEMEHEKFHTDEKSLQELFGIPKVVANEILQKCTICRMSGSGGGHKGGKLKM 914 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV E+QTD Sbjct 915 GPGTWQIDCTHLEGQILLVAINVESNLIWTKILKQENAKETVLAILELIQTHNVLEVQTD 974 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL +++GI HK GIP NPQSQALVEN NN LK WI+KF E +L A+ Sbjct 975 NGPNFANSRMEGLTSFLGINHKFGIPMNPQSQALVENTNNVLKQWIKKFRQEVETLHAAV 1034 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M PYELYI QE+ IQ Y+S+I K QW+YYKD KDK+W Sbjct 1035 ALATFALNKKRKGNIGGMTPYELYIWQENNSIQQYYSSILFKKFGKEQWIYYKDIKDKEW 1094 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 KG + V YWG+GSVL+K+ EKG+FLVP R IRRVP P Sbjct 1095 KGSVPVIYWGEGSVLIKEPEKGLFLVPNRRIRRVPPP 1131 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: ABC41656.1 Length: 1135 Range 1: 853 to 1129 Score:311 bits(797), Expect:4e-94, Method:Compositional matrix adjust., Identities:155/277(56%), Positives:200/277(72%), Gaps:5/277(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIR-- 59 SW+D IE+AE+ HEKFH+D + L+ F +P++VA EI +KC +CR+ G G + Sbjct 853 SWMDNIEKAEMEHEKFHTDEKSLQELFGIPKVVANEILQKCTICRMSGSGGGHKGGKLKM 912 Query 60 -PGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +I+ QE A TV A+L+LI HNV E+QTD Sbjct 913 GPGTWQIDCTHLEGQILLVAINVESNLIWTKILKQENAKETVLAILELIQTHNVLEVQTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL +++GI HK GIP NPQSQALVEN NN LK WI+KF E +L A+ Sbjct 973 NGPNFANSRMEGLTSFLGINHKFGIPMNPQSQALVENTNNVLKQWIKKFRQEVETLHAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA LN K++G +G M PYELYI QE+ IQ Y+S+I K QW+YYKD KDK+W Sbjct 1033 ALATFALNKKRKGNIGGMTPYELYIWQENNSIQQYYSSILFKKFGKEQWIYYKDIKDKEW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 KG + V YWG+GSVL+K+ EKG+FLVP R IRRVP P Sbjct 1093 KGSVPVIYWGEGSVLIKEPEKGLFLVPNRRIRRVPPP 1129 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04875.1 Length: 1143 Range 1: 853 to 1132 Score:309 bits(792), Expect:2e-93, Method:Compositional matrix adjust., Identities:156/280(56%), Positives:202/280(72%), Gaps:5/280(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+ ++ Sbjct 853 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKSRM 912 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+D TH G+I++VA++VES +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 913 GPGTWQIDRTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILELIQTHNVSEIHTD 972 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+EN NNTLK WI+KF PE +L A+ Sbjct 973 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIENTNNTLKNWIKKFRPEVETLQAAV 1032 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1033 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1092 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTL 276 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L Sbjct 1093 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQEL 1132 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04886.1 Length: 1146 Range 1: 856 to 1139 Score:309 bits(792), Expect:2e-93, Method:Compositional matrix adjust., Identities:157/284(55%), Positives:203/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K Q +YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQLIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol, partial [Feline immunodeficiency virus] Sequence ID: ABO69465.1 Length: 1146 Range 1: 856 to 1139 Score:309 bits(791), Expect:4e-93, Method:Compositional matrix adjust., Identities:156/284(55%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGE---QVGGQLKI 58 S ++ IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G +GG+L++ Sbjct 856 SRMNNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHLGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TV A+L LI HNV+E+ TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENAKETVLAILDLIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37736.1 Length: 1137 Range 1: 854 to 1130 Score:308 bits(790), Expect:5e-93, Method:Compositional matrix adjust., Identities:153/277(55%), Positives:197/277(71%), Gaps:5/277(1%) Query 9 EAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKIRPGIWQM 65 +AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ PG+WQ+ Sbjct 854 QAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKMGPGVWQV 913 Query 66 DCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKN 125 DCTH G+II+VA++VESG LW + + QETA TV A+L+L+ HNV E+QTDNGPNF N Sbjct 914 DCTHLEGQIILVAINVESGLLWTKXLKQETAKETVLAVLELVQTHNVVEIQTDNGPNFAN 973 Query 126 QKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCL 185 +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE +L A+ALA Sbjct 974 SRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPEVETLQAAVALATFXX 1033 Query 186 NFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKWKGPMRVE 243 K++G +G + YELYI + I Y+S I K QW+YYKD KDK WKGP+ V Sbjct 1034 KKKKKGNIGXXSXYELYIXXXNNLIXQYYSNIIFKKFGTKQWIYYKDIKDKVWKGPVEVL 1093 Query 244 YWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1094 YWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1130 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: QFR04878.1 Length: 1146 Range 1: 856 to 1139 Score:305 bits(782), Expect:7e-92, Method:Compositional matrix adjust., Identities:154/284(54%), Positives:204/284(71%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGG---QLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G +G +L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNMGHHGEKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG ++DCTH G+I++VA++V+S +W +++ QE A TV A+L+LI HNV+E+ TD Sbjct 916 GPGTGKIDCTHLEGQILLVAINVQSHLIWTRVLKQENAKETVLAILELIQTHNVSEIHTD 975 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQAL+E+ NNTLK WI+KF PE +L A+ Sbjct 976 NGPNFANSRMEGLTAFLGITHKFGIPLNPQSQALIESTNNTLKNWIKKFRPEVETLQAAV 1035 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1036 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1095 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1096 KGPKQVVYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1139 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63292.1 Length: 1135 Range 1: 843 to 1104 Score:301 bits(772), Expect:2e-90, Method:Compositional matrix adjust., Identities:144/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +P+ +AEEI RKCPLC ++GE GQLK+ Sbjct 843 TSWMDNIEKAEEEHDKFHSDVPYLRQQFGIPKQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFRENTETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +SAIPQK++ W+YYKD++DK+WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSAIPQKILKDSWIYYKDRRDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD E L Sbjct 1083 TQVYYWGEGAVLIKDNEDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63284.1 Length: 1135 Range 1: 843 to 1104 Score:301 bits(771), Expect:2e-90, Method:Compositional matrix adjust., Identities:145/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSW+D IE+AE +H+KFHSD YL+ +F +PR +AEEI RKCPLC ++GE GQLKI Sbjct 843 SSWMDNIEKAEEDHDKFHSDVIYLKHQFGIPRQLAEEIIRKCPLCMVKGEVSYGQLKIGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF+ + +E A T A L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFVVVYNLKREDAKETGLAFLSLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENFNRTLKIWIDKFREVTETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELY+QQES+RIQ+ +S+IP K + W+YYKD+KDK+WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYVQQESIRIQELYSSIPHKFLKDSWIYYKDRKDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KDE L Sbjct 1083 TQVYYWGEGAVLIKDENDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63296.1 Length: 1135 Range 1: 843 to 1104 Score:301 bits(771), Expect:2e-90, Method:Compositional matrix adjust., Identities:144/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +P+ +AEEI RKCPLC ++GE GQLK+ Sbjct 843 ASWMDNIEKAEEEHDKFHSDVPYLRQQFGIPKQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFREATETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +SAIPQK++ W+YYKD++DK+WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSAIPQKILKDSWIYYKDRRDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD E L Sbjct 1083 TQVYYWGEGAVLIKDNEDKYLL 1104 >Crystal Structure of Catalytic Core domain of FIV Integrase [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: 4PA1_A Length: 151 Range 1: 3 to 151 Score:275 bits(702), Expect:3e-90, Method:Compositional matrix adjust., Identities:126/149(85%), Positives:140/149(93%), Gaps:0/149(0%) Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 3 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 62 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 63 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 122 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLR 209 A+H LNFK+RGR+G MAPYEL QQESLR Sbjct 123 AVHSLNFKRRGRIGGMAPYELLAQQESLR 151 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63304.1 Length: 1135 Range 1: 843 to 1104 Score:300 bits(769), Expect:4e-90, Method:Compositional matrix adjust., Identities:143/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +P+ +AEEI RKCPLC ++GE GQLK+ Sbjct 843 ASWMDNIEKAEEEHDKFHSDVPYLRQQFGIPKQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFREATETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELY+QQES+RIQ+ +SAIPQK++ W+YYKD++DK+WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYVQQESIRIQELYSAIPQKILKDSWIYYKDRRDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD E L Sbjct 1083 TQVYYWGEGAVLIKDNEDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63288.1 Length: 1135 Range 1: 843 to 1104 Score:300 bits(769), Expect:5e-90, Method:Compositional matrix adjust., Identities:143/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +P+ +AEEI RKCPLC ++GE GQLK+ Sbjct 843 ASWMDNIEKAEEEHDKFHSDVPYLRQQFGIPKQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFREATETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +SAIPQK++ W+YYKD++D++WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSAIPQKILKDSWIYYKDRRDRQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD E L Sbjct 1083 TQVYYWGEGAVLIKDNEDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63300.1 Length: 1135 Range 1: 843 to 1104 Score:300 bits(767), Expect:7e-90, Method:Compositional matrix adjust., Identities:143/262(55%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+K+HSD YLR +F +P+ +AEEI RKCPLC ++GE GQLK+ Sbjct 843 ASWMDNIEKAEEEHDKYHSDVPYLRQQFGIPKQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFREATETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +SAIPQK++ W+YYKD++DK+WKGP Sbjct 1023 AVHALNQKRKGGLGGVTPYELYIQQESIRIQELYSAIPQKILKDSWIYYKDRRDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD E L Sbjct 1083 TQVYYWGEGAVLIKDNEDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63280.1 Length: 1135 Range 1: 843 to 1104 Score:300 bits(767), Expect:9e-90, Method:Compositional matrix adjust., Identities:142/262(54%), Positives:190/262(72%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +PR +AEEI RKCPLC ++GE GQLK+ Sbjct 843 ASWMDNIEKAEEEHDKFHSDVPYLRQQFGIPRQIAEEIIRKCPLCMVKGEVPHGQLKLGE 902 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SGF + +E A T + L L + VTE+QTDNG Sbjct 903 GIWQIDCTHLEKLILLVCIQTTSGFAVVYNLKREDAKETGLSFLNLFSQYYVTEIQTDNG 962 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 963 PNFANERITGICFHFGIKHKKGIPLNPQSQALVENYNKTLKIWIDKFRETTETLEAAVQL 1022 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELY+QQES+RIQ+ +SAIPQ+++ W+YYKD++DK+WKGP Sbjct 1023 AVHALNQKRKGGLGGITPYELYVQQESIRIQELYSAIPQQILKDSWIYYKDRRDKQWKGP 1082 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 +V YWG+G+VL+KD + L Sbjct 1083 TQVYYWGEGAVLIKDNDDKYLL 1104 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63314.1 Length: 735 Range 1: 441 to 696 Score:291 bits(745), Expect:2e-89, Method:Compositional matrix adjust., Identities:136/256(53%), Positives:185/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 441 NSWIENIEKAEEEHDKYHSDSTYLRQHFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 500 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH + I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 501 GIWQIDCTHLDKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 560 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK+W+QKF T +L+ A+ L Sbjct 561 PNFANERVAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKMWVQKFRDVTETLEAAVQL 620 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W++YKD+KDK WKGP Sbjct 621 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKNFLKDSWIFYKDRKDKSWKGP 680 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 681 VQVHYWGDGAVLIKDD 696 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63321.1 Length: 1140 Range 1: 846 to 1101 Score:296 bits(758), Expect:2e-88, Method:Compositional matrix adjust., Identities:141/256(55%), Positives:185/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR F +P++VAEEI +KCPLC IRGE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSTYLRQNFGIPKMVAEEIIKKCPLCMIRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK WI+KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFGIKHKKGIPLNPQSQALVENYNKTLKSWIEKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKTFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KDE Sbjct 1086 VQVQYWGDGAVLIKDE 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63264.1 Length: 1140 Range 1: 846 to 1101 Score:295 bits(754), Expect:7e-88, Method:Compositional matrix adjust., Identities:140/256(55%), Positives:186/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC IRGE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK WI+KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFGIKHKKGIPLNPQSQALVENYNKTLKNWIEKFREVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKTFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KD+ Sbjct 1086 VQVQYWGDGAVLVKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63252.1 Length: 1140 Range 1: 846 to 1101 Score:295 bits(754), Expect:7e-88, Method:Compositional matrix adjust., Identities:140/256(55%), Positives:186/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC IRGE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK WI+KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFGIKHKKGIPLNPQSQALVENYNKTLKNWIEKFREVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKTFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KD+ Sbjct 1086 VQVQYWGDGAVLVKDD 1101 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37956.1 Length: 1137 Range 1: 847 to 1130 Score:293 bits(751), Expect:2e-87, Method:Compositional matrix adjust., Identities:152/284(54%), Positives:193/284(67%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRG---EQVGGQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI +KC +CR+ G GG+LK+ Sbjct 847 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQKCTICRMTGIGSGNRGGKLKM 906 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+L+ HNV E+QTD Sbjct 907 GPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELVQTHNVVEIQTD 966 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF P +L A+ Sbjct 967 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKSWIKKFRPXVETLQAAV 1026 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA K QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 1027 ALAXXXXKKKXXXXXXXXXXXXXXXXQENNLIQQYYSNIIFKKFGTKQWIYYKDIKDKVW 1086 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP+ V YWG+GSVL+ D E G+FLVP R IRRVP P L D Sbjct 1087 KGPVEVLYWGEGSVLIXDPEXGLFLVPNRRIRRVPPPQELEVSD 1130 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63276.1 Length: 1140 Range 1: 846 to 1101 Score:293 bits(751), Expect:2e-87, Method:Compositional matrix adjust., Identities:139/256(54%), Positives:185/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIDNIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPVGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGMAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + GIKHK GIP NPQSQALVEN N TLK W+ KF T +L+ A+ L Sbjct 966 PNFSNERIAGICFHFGIKHKKGIPLNPQSQALVENYNKTLKTWVIKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKIFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KD+ Sbjct 1086 VQVQYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63329.1 Length: 1139 Range 1: 846 to 1101 Score:292 bits(748), Expect:5e-87, Method:Compositional matrix adjust., Identities:140/256(55%), Positives:185/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW+D IE+AE H+K+HSD YLR F LP+ VA+EI +KCPLC I+GE G LK+ Sbjct 846 ASWIDNIEKAEEEHDKYHSDSTYLRQHFGLPKQVADEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH + I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLDKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK+W+QKF T +++ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKLWVQKFKDATETIEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP Q L W+YYKD+KDK+WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPIQFLKDSWIYYKDRKDKQWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 +V YWG+G+VL+KDE Sbjct 1086 TQVYYWGEGAVLVKDE 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63232.1 Length: 1140 Range 1: 846 to 1101 Score:292 bits(747), Expect:6e-87, Method:Compositional matrix adjust., Identities:137/256(54%), Positives:186/256(72%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH + I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLDKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK+W+QKF T +L+ A+ L Sbjct 966 PNFANERVAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKMWVQKFRDVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKNFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63256.1 Length: 1140 Range 1: 846 to 1101 Score:291 bits(746), Expect:1e-86, Method:Compositional matrix adjust., Identities:138/256(54%), Positives:184/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC IRGE G LK+ Sbjct 846 TSWIENIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK+W KF T +L+ A+ L Sbjct 966 PNFANERVAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKLWTDKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKTFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KD+ Sbjct 1086 VQVQYWGDGAVLVKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63260.1 Length: 1140 Range 1: 846 to 1107 Score:290 bits(743), Expect:2e-86, Method:Compositional matrix adjust., Identities:140/262(53%), Positives:185/262(70%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC IRGE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLRKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK W KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKNWTMKFTEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ L+ W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQEVYSQIPKTLLKDSWIYYKDRKDKFWKGP 1085 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 ++V+YWG G+VL+KD+ L Sbjct 1086 VQVQYWGDGAVLIKDDNDKYIL 1107 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63248.1 Length: 1140 Range 1: 846 to 1101 Score:290 bits(743), Expect:2e-86, Method:Compositional matrix adjust., Identities:137/256(54%), Positives:184/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++ + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHIEKLILLACIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK+WI KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKIWIMKFKEVTETLEAAIQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESMRIQELYSQIPKIFLKDSWIYYKDRKDKAWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V+YWG G+VL+KD+ Sbjct 1086 VQVQYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63308.1 Length: 1140 Range 1: 846 to 1101 Score:290 bits(743), Expect:2e-86, Method:Compositional matrix adjust., Identities:138/256(54%), Positives:183/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK WIQKF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKTWIQKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPINFLKDSWIYYKDRKDKTWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63268.1 Length: 1139 Range 1: 846 to 1107 Score:290 bits(742), Expect:3e-86, Method:Compositional matrix adjust., Identities:141/262(54%), Positives:185/262(70%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSVYLRHQFGIPKLVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHMEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK WIQKF T +++ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKTWIQKFKDVTETIEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP Q L W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPIQFLKDSWIYYKDRKDKIWKGP 1085 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 ++V YWG G+VL+KD+ L Sbjct 1086 VQVHYWGDGAVLIKDDTDKYLL 1107 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63272.1 Length: 1139 Range 1: 846 to 1107 Score:290 bits(742), Expect:3e-86, Method:Compositional matrix adjust., Identities:141/262(54%), Positives:185/262(70%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSVYLRHQFGIPKLVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHMEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK WIQKF T +++ A+ L Sbjct 966 PNFANERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKTWIQKFKDVTETIEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP Q L W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPIQFLKDSWIYYKDRKDKIWKGP 1085 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 ++V YWG G+VL+KD+ L Sbjct 1086 VQVHYWGDGAVLIKDDTDKYLL 1107 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63325.1 Length: 1140 Range 1: 846 to 1107 Score:289 bits(740), Expect:6e-86, Method:Compositional matrix adjust., Identities:137/262(52%), Positives:184/262(70%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR F +P++VAEEI +KCPLC +RGE G LK+ Sbjct 846 NSWIENIEKAEEEHDKYHSDSTYLRQHFGIPKMVAEEIIKKCPLCMLRGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGIAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + IKHK GIP NPQSQALVEN N TLK W+ KF T +L+ A+ L Sbjct 966 PNFTNERIAGICFHFNIKHKKGIPLNPQSQALVENYNKTLKNWVMKFTAVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP+ + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPKTFLKDSWIYYKDRKDKSWKGP 1085 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 ++V+YWG G+VL+KD+ L Sbjct 1086 VQVQYWGDGAVLIKDDNDKYIL 1107 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63236.1 Length: 1140 Range 1: 846 to 1101 Score:289 bits(740), Expect:7e-86, Method:Compositional matrix adjust., Identities:135/256(53%), Positives:184/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + I+HK GIP NPQSQALVEN N TLK+W+QKF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFNIRHKKGIPLNPQSQALVENYNKTLKIWVQKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELY+QQES+RIQ+ +S IP + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYVQQESIRIQELYSQIPINFLKDSWIYYKDRKDKTWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63228.1 Length: 1140 Range 1: 846 to 1101 Score:289 bits(739), Expect:1e-85, Method:Compositional matrix adjust., Identities:135/256(53%), Positives:184/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+++HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDRYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + I+HK GIP NPQSQALVEN N TLK+W+QKF T +L+ A+ L Sbjct 966 PNFANERIAGICFHFNIRHKKGIPLNPQSQALVENYNKTLKIWVQKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPINFLKDSWIYYKDRKDKTWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37731.1 Length: 1143 Range 1: 907 to 1136 Score:288 bits(736), Expect:3e-85, Method:Compositional matrix adjust., Identities:140/230(61%), Positives:173/230(75%), Gaps:2/230(0%) Query 53 GGQLKIRPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNV 112 GG+LK+ PG+WQ+DCTH G+II+VA++VESG LW +++ QETA TV A+L+LI HNV Sbjct 907 GGKLKMGPGVWQVDCTHLEGQIILVAINVESGLLWTKLLKQETAKETVLAVLELIQTHNV 966 Query 113 TELQTDNGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETT 172 E+QTDNGPNF N +MEGL ++GI HK GIP NPQSQALVEN N+TLK WI+KF PE Sbjct 967 VEIQTDNGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVNSTLKNWIKKFRPEVE 1026 Query 173 SLDNALALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKD 230 +L A+ALA LN K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD Sbjct 1027 TLQAAVALATFALNKKRKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKD 1086 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KDK WKGP+ V YWG+GSVL+KD E+G+FLVP R IRRVP P L D Sbjct 1087 IKDKAWKGPVEVLYWGEGSVLIKDPERGLFLVPNRRIRRVPPPQELEVSD 1136 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63240.1 Length: 1140 Range 1: 846 to 1101 Score:287 bits(735), Expect:3e-85, Method:Compositional matrix adjust., Identities:135/256(53%), Positives:183/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+K+HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + I+HK GIP NPQSQALVEN N TLK+W+ KF T +L+ A+ L Sbjct 966 PNFANERIAGICFHYNIRHKKGIPLNPQSQALVENYNKTLKIWVHKFKEVTETLEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP + W+YYKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPINFLKDSWIYYKDRKDKTWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63332.1 Length: 1139 Range 1: 846 to 1107 Score:287 bits(734), Expect:5e-85, Method:Compositional matrix adjust., Identities:138/262(53%), Positives:185/262(70%), Gaps:1/262(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+KFHSD YLR F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDKFHSDSVYLRHHFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHMEKLILLVCIQTTSGYAVVYNLRKEDAKETGLAFLNLFSLYFVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + +KHK GIP NPQSQALVEN N TLK+WIQKF T +++ A+ L Sbjct 966 PNFANERIAGICFHFNVKHKKGIPLNPQSQALVENYNKTLKIWIQKFRDVTETIEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIP-QKLMMQWLYYKDQKDKKWKGP 239 A+H LN K++G +G + PYELYIQQES+RIQ+ +S IP Q L W+YYKD+KDK W+GP Sbjct 1026 AVHALNQKRKGGIGGITPYELYIQQESIRIQESYSQIPIQFLKDSWIYYKDRKDKIWRGP 1085 Query 240 MRVEYWGQGSVLLKDEEKGIFL 261 ++V YWG G+VL+KD+ L Sbjct 1086 VQVHYWGDGAVLIKDDTDKYLL 1107 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: AHZ63244.1 Length: 1140 Range 1: 846 to 1101 Score:286 bits(733), Expect:5e-85, Method:Compositional matrix adjust., Identities:133/256(52%), Positives:184/256(71%), Gaps:1/256(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 +SW++ IE+AE H+++HSD YLR +F +P++VAEEI +KCPLC I+GE G LK+ Sbjct 846 NSWIENIEKAEEEHDRYHSDSTYLRQQFGIPKMVAEEIIKKCPLCMIKGEVPAGHLKLGE 905 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQ+DCTH I++V + SG+ + +E A T A L L + VTE+QTDNG Sbjct 906 GIWQIDCTHLEKLILLVCIQTTSGYAVVYNLKKEDAKETGLAFLNLFSLYYVTEIQTDNG 965 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNF N+++ G+ + I+HK GIP NPQSQALVEN N TLK+W+QKF T +++ A+ L Sbjct 966 PNFANERIAGICFHFNIRHKKGIPLNPQSQALVENYNKTLKIWVQKFKEVTETIEAAVQL 1025 Query 181 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMM-QWLYYKDQKDKKWKGP 239 A+H LN K++G LG + PYELYIQQES+RIQ+ +S IP + W++YKD+KDK WKGP Sbjct 1026 AVHALNQKRKGGLGGITPYELYIQQESIRIQELYSQIPINFLKDSWIFYKDRKDKTWKGP 1085 Query 240 MRVEYWGQGSVLLKDE 255 ++V YWG G+VL+KD+ Sbjct 1086 VQVHYWGDGAVLIKDD 1101 >pol protein, partial [Puma lentivirus] Sequence ID: QZU26778.1 Length: 1127 Range 1: 856 to 1120 Score:284 bits(726), Expect:4e-84, Method:Compositional matrix adjust., Identities:148/284(52%), Positives:190/284(66%), Gaps:24/284(8%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ F LPR+VA EI +KC +CR+ G G G+L++ Sbjct 856 SWMDNIEKAEIEHEKFHTDEKTLQDMFGLPRVVANEILQKCTICRMTGTNSGHHGGKLRM 915 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG WQ+DCTH G+I++VA++VES +W +++ QE A TD Sbjct 916 GPGTWQIDCTHLEGQILLVAINVESHLIWTRVLKQENA-------------------HTD 956 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI H GIP NPQSQAL+EN NNTLK WI+KF PE +L A+ Sbjct 957 NGPNFANSRMEGLTAFLGITHIFGIPLNPQSQALIENTNNTLKNWIKKFRPEVETLQAAV 1016 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA+ LN K++G +G PYELYI QE+ IQ Y+S + K QW+YYKD KDK W Sbjct 1017 ALAVLALNKKRKGNIGGRTPYELYIWQENELIQQYYSNLLFKKFGNEQWIYYKDMKDKVW 1076 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 KGP +V YWG+GSVL+KD EKG+ LVP R IRRVP P L D Sbjct 1077 KGPKQVIYWGEGSVLIKDPEKGLLLVPNRRIRRVPPPQELEVSD 1120 >pol protein, partial [Puma lentivirus] Sequence ID: QIG37758.1 Length: 940 Range 1: 650 to 933 Score:266 bits(680), Expect:2e-78, Method:Compositional matrix adjust., Identities:139/284(49%), Positives:179/284(63%), Gaps:5/284(1%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVG---GQLKI 58 SW+D IE+AE+ HEKFH+D + L+ +F LP++VA EI + C +CR+ G G G+LK+ Sbjct 650 SWMDYIEQAEIEHEKFHTDEKTLQEKFGLPKVVANEILQXCTICRMTGTGSGNRGGKLKM 709 Query 59 RPGIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTD 118 PG+WQ+DCTH G+II+VA+ TV A+L+L+ HNV E+QTD Sbjct 710 GPGVWQVDCTHLEGQIILVAIXXXXXXXXXXXXXXXXXXXTVLAVLELVQTHNVVEIQTD 769 Query 119 NGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNAL 178 NGPNF N +MEGL ++GI HK GIP NPQSQALVEN E +L A+ Sbjct 770 NGPNFANSRMEGLTAFLGIYHKYGIPLNPQSQALVENVXXXXXXXXXXXXXEVETLQAAV 829 Query 179 ALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLM--MQWLYYKDQKDKKW 236 ALA L K++G +G M+PYELYI QE+ IQ Y+S I K QW+YYKD KDK W Sbjct 830 ALATFALKKKKKGNIGGMSPYELYIWQENNLIQQYYSNIIFKKFGTKQWIYYKDSKDKVW 889 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 +GP+ V +WG+GSVL KD EKG+ LVP IR P P L D Sbjct 890 QGPVDVLHWGEGSVLXKDXEKGLXLVPNXXIRXXPPPQELEVSD 933 >The 1.1 Angstrom Structure of Catalytic Core Domain of FIV Integrase [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: 4MQ3_A Length: 132 Range 1: 5 to 132 Score:238 bits(606), Expect:8e-76, Method:Compositional matrix adjust., Identities:109/128(85%), Positives:121/128(94%), Gaps:0/128(0%) Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 5 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 64 Query 121 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 65 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 124 Query 181 ALHCLNFK 188 A+H LN K Sbjct 125 AVHSLNKK 132 >pol protein, partial [Feline immunodeficiency virus] Sequence ID: UVJ47966.1 Length: 238 Range 1: 118 to 238 Score:234 bits(597), Expect:5e-73, Method:Compositional matrix adjust., Identities:102/121(84%), Positives:118/121(97%), Gaps:0/121(0%) Query 1 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 60 SSW+D++EEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRIRGEQVGGQLKI P Sbjct 118 SSWIDKVEEAEINHEKFHSDPQYLRTEFNLPKVVAEEIRRKCPVCRIRGEQVGGQLKIGP 177 Query 61 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 120 GIWQMDCTHF+GKII+VA+HVESG++WAQ+I QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 178 GIWQMDCTHFDGKIILVAIHVESGYIWAQVISQETADCTVKAVLQLLSAHNVTELQTDNG 237 Query 121 P 121 P Sbjct 238 P 238 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAR02377.1 Length: 1017 Range 1: 723 to 989 Score:229 bits(583), Expect:3e-64, Method:Compositional matrix adjust., Identities:117/268(44%), Positives:167/268(62%), Gaps:3/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ +E A +HEK+HS+ +YLR +++P ++A+EI C C+ GE GQ+ G+ Sbjct 723 FMENLEPAREDHEKYHSNWKYLRDTYHIPTLLAKEIVNHCHKCQNHGEPKSGQVNAEVGV 782 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G II+VAVHV SG++WA+I+P+ET CT ALL+L VT++ TDNGPN Sbjct 783 WQMDCTHLEGSIILVAVHVASGYVWAKILPRETGKCTGIALLELAAMWPVTQIHTDNGPN 842 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ E + I H G+P NPQSQ +VEN N LK I+K E L ALA AL Sbjct 843 FTSQEFEAAAWWANIHHTTGVPYNPQSQGVVENMNRQLKETIKKIRDEVEYLPTALAQAL 902 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 LNFK++G +G MAP + +I L +Q + I K +Y++ D +WKGP Sbjct 903 FILNFKRKGGIGDMAPVDRFINMIHTELELQTSNNQI-TKFSKFRVYFRTGADPQWKGPA 961 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 R+ + G+G+V++K EE I VPRR + Sbjct 962 RLLWKGEGAVVIKTEEGDILTVPRRKAK 989 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42059.1 Length: 293 Range 1: 1 to 263 Score:214 bits(544), Expect:3e-64, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ Q L +F LP+IVA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKFHSNVQELAHKFGLPKIVARQIVNTCAQCQQKGEAIQGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A K +YY++ +D+ WKGP + Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04339.1 Length: 380 Range 1: 97 to 366 Score:216 bits(549), Expect:6e-64, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ PG Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAEPGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04048.1 Length: 380 Range 1: 97 to 366 Score:216 bits(549), Expect:6e-64, Method:Compositional matrix adjust., Identities:110/271(41%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK K I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTK-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06629.1 Length: 380 Range 1: 97 to 359 Score:215 bits(548), Expect:9e-64, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ PG Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAEPGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42968.1 Length: 293 Range 1: 1 to 263 Score:213 bits(541), Expect:9e-64, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKFHSNVKELAHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNTELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRXTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16562.1 Length: 293 Range 1: 1 to 263 Score:212 bits(540), Expect:1e-63, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCDQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDKIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEXEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGXD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98939.1 Length: 288 Range 1: 1 to 263 Score:212 bits(539), Expect:1e-63, Method:Compositional matrix adjust., Identities:113/275(41%), Positives:167/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAIHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +GR E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGRYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22256.1 Length: 380 Range 1: 97 to 359 Score:215 bits(547), Expect:1e-63, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ PG Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAEPGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AHB61190.1 Length: 992 Range 1: 696 to 962 Score:226 bits(576), Expect:2e-63, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:179/267(67%), Gaps:1/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 W+++IEEAEL+H+K+HS+ QY++ +F +P++VA+EI +CP C+ RG+ + G L G+ Sbjct 696 WMEKIEEAELDHQKYHSNVQYMQEQFGIPQLVAKEIWERCPQCQNRGQPMHGSLDYSYGV 755 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+I+VAVHV + F WA I+ +E+ + T +AL++L V ++ TDNGPN Sbjct 756 WQMDCTHEEGKVILVAVHVCTLFCWATILKRESGEETGRALIKLASQWEVKQVHTDNGPN 815 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q + ++GIKH GIP NPQSQ +VE N +K I+K + +L++ +A+A+ Sbjct 816 FTSQAFRAAVWWLGIKHTTGIPYNPQSQGIVEQRNKMIKEGIKKMEEQAETLESKVAMAV 875 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + LNFK++G LG +P+E +++ + ++ + I K + Y + +W+GP + Sbjct 876 YALNFKRKGGLGGKSPWERQVERAIIELETQNITQIQNKKFQNFKVYWKEHTGEWQGPGQ 935 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V++K++E +F+ PRR ++ Sbjct 936 LVWKGEGAVVIKNQEGSLFVKPRRKVK 962 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42099.1 Length: 293 Range 1: 1 to 263 Score:212 bits(539), Expect:2e-63, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F LP++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKFHSNVKELSHKFGLPKLVARQIVNSCTQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHPLKNQISRIRDQANTVKTIVLMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42077.1 Length: 293 Range 1: 1 to 278 Score:212 bits(539), Expect:2e-63, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:171/279(61%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNXCAQCQQKGEATHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G G+V++K I ++PRR + + + E D Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRRKAKIIKDYGGRQEXD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42078.1 Length: 293 Range 1: 1 to 263 Score:211 bits(538), Expect:3e-63, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNXCAQCQQKGEATHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42117.1 Length: 293 Range 1: 1 to 263 Score:211 bits(538), Expect:3e-63, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKFHSNXKELSHKFGIPKLVARQIVNTCPQCQQKGEAMHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQXFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQ-ESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I S + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITSEQEIQFLQAKNSKLQKFQVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42957.1 Length: 293 Range 1: 1 to 263 Score:211 bits(537), Expect:3e-63, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +YY++ +D++WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLXAKNSKFKNFQVYYREGRDQQWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGAD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21853.1 Length: 380 Range 1: 97 to 366 Score:214 bits(544), Expect:3e-63, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E ++ + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERFVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08072.1 Length: 290 Range 1: 1 to 263 Score:211 bits(537), Expect:4e-63, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP +VA++I CP C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNMKELAHKFGLPNLVAKQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68491.1 Length: 293 Range 1: 1 to 263 Score:211 bits(536), Expect:4e-63, Method:Compositional matrix adjust., Identities:111/264(42%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNXRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51513.1 Length: 293 Range 1: 1 to 263 Score:211 bits(536), Expect:4e-63, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELTHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKTFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVK-VGGDIKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42097.1 Length: 293 Range 1: 1 to 270 Score:211 bits(536), Expect:5e-63, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:170/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVAKQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP + Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + + + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98943.1 Length: 288 Range 1: 1 to 263 Score:210 bits(535), Expect:5e-63, Method:Compositional matrix adjust., Identities:114/275(41%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C IRGE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIRGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAHFLLKLAARWPVKVLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22212.1 Length: 380 Range 1: 97 to 366 Score:213 bits(542), Expect:6e-63, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L C +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLACRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98948.1 Length: 288 Range 1: 1 to 263 Score:210 bits(534), Expect:8e-63, Method:Compositional matrix adjust., Identities:111/264(42%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGRYTAGERLIDILASQIQTTELQKQISKIQNFRVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83208.1 Length: 293 Range 1: 1 to 263 Score:210 bits(535), Expect:8e-63, Method:Compositional matrix adjust., Identities:110/268(41%), Positives:168/268(62%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+PGNPQSQ +VE+ N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPGNPQSQGVVESMNRYLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 HC+NFK+RG +G M P E + +QE IQ + A KL +Y+++ +D+ WK Sbjct 181 HCMNFKRRGGIGDMTPAERLXNMITTEQE---IQ-FLQAKNSKLKNFRVYFREGRDQLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP + + G G+V++K I ++PRR Sbjct 237 GPGELLWKGDGAVIVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AUY61925.1 Length: 293 Range 1: 1 to 263 Score:210 bits(534), Expect:8e-63, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEKFHS+ + L +F LP++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLERIEPAQEEHEKFHSNVKELAHKFGLPKLVARQIVDTCAQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGNGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06734.1 Length: 380 Range 1: 97 to 366 Score:213 bits(542), Expect:8e-63, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVSKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21134.1 Length: 380 Range 1: 97 to 366 Score:213 bits(541), Expect:9e-63, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K W+YY++ +D+ WKGP Sbjct 277 HCINFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFWVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21141.1 Length: 380 Range 1: 97 to 366 Score:213 bits(541), Expect:9e-63, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12763.1 Length: 271 Range 1: 1 to 270 Score:209 bits(532), Expect:9e-63, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:170/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + V + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIVKD 270 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68502.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68525.1 Length: 293 Range 1: 1 to 263 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FXSQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68482.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68483.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68485.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68486.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68487.1 Length: 293 Range 1: 1 to 263 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACO81759.1 Length: 293 Range 1: 1 to 263 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNIKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQETQFLHTKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12761.1 Length: 271 Range 1: 1 to 263 Score:209 bits(532), Expect:1e-62, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P+++A +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKFHSNIKELSHKFGIPKLIARQIVNSCTQCQQKGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + + + + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMHHHLKNQISRIRDQANTXETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LXWKGEGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42071.1 Length: 293 Range 1: 1 to 263 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42966.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEKFHS+ + L +F P +VA++I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKFHSNIKELAHKFGJPNLVAKQIVNTCAQCQQKGEAIHGQVNAEJGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVVVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACO81760.1 Length: 292 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNIKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQETQFLHTKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06682.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D+IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLDKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98943.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 241 LLWKGEGAVILKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06634.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIESAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42085.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNXKELSHKFGLPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68497.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQZTGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42985.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCTQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F ++ + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSILKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20842.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDICHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42073.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNVKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQIXKIREQANTIETIVVMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERVINMITTEQEVQFLQAXNLKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04394.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12169.1 Length: 303 Range 1: 10 to 268 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:114/264(43%), Positives:162/264(61%), Gaps:10/264(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P +WQMD Sbjct 10 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAMHGQVNCSPEVWQMD 69 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 70 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 129 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + GI H+ GIP NPQSQ +VE N LK I + + L A+ +A+ N Sbjct 130 AMKAACWWTGIXHEFGIPYNPQSQGVVEAMNKELKSIIGQVRDQAEHLKTAVQMAVFVHN 189 Query 187 FKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +GR E I Q ++ +Q S I QK +YY+D +D WKGP + Sbjct 190 FKRKGGIGRXTAGERLIDILASQIQTTELQKQISKI-QKFR---VYYRDSRDPIWKGPAQ 245 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 246 LLWKGEGAVVIQDKGD-IKVVPRR 268 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AXR70237.1 Length: 299 Range 1: 1 to 263 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+H G+P NPQSQ +VE N+ LK I + + SL+ + +A Sbjct 121 FTSQDVKMVAWWVGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSLETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLXFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09152.1 Length: 279 Range 1: 1 to 279 Score:209 bits(532), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:173/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP+IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPQIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQSQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98949.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05563.1 Length: 380 Range 1: 97 to 359 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWRITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42965.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNXKELAHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE+ N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVESMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04058.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98941.1 Length: 293 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98942.1 Length: 293 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98944.1 Length: 293 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98945.1 Length: 293 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98946.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:1e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21813.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVSAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNTTTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06648.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:1e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNTELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12167.1 Length: 303 Range 1: 10 to 268 Score:210 bits(534), Expect:1e-62, Method:Compositional matrix adjust., Identities:111/260(43%), Positives:160/260(61%), Gaps:2/260(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P +WQMD Sbjct 10 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAIHGQVDCSPEVWQMD 69 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 70 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 129 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + GI+H+ GIP NPQSQ +VE N LK I + + L A+ +A+ N Sbjct 130 AMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIGQVRDQAEHLKTAVQMAVFVHN 189 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +GR E I + +IQ K+ +YY+D +D WKGP ++ + Sbjct 190 FKRKGGIGRYTAGERLIDILASQIQTTELQKQISKIQNFRVYYRDSRDPIWKGPAQLLWK 249 Query 246 GQGSVLLKDEEKGIFLVPRR 265 G+G+V+++D+ I +VPRR Sbjct 250 GEGAVVIQDKGD-IKVVPRR 268 >integrase protein, partial [Simian-Human immunodeficiency virus] Sequence ID: AIU65596.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:2e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05323.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:2e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKTIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42112.1 Length: 293 Range 1: 1 to 263 Score:209 bits(533), Expect:2e-62, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIVKVGTE-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21013.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04115.1 Length: 380 Range 1: 97 to 366 Score:212 bits(540), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNKITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AGP05167.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88871.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP +VA++I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGLPNLVAKQIVNTCAQCQQKGEAIHGQVDAAVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRHTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42954.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P+IVA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNIKELAHKFGIPKIVARQIVNTCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K + I +VPRR Sbjct 241 LLWKGDGAVIVKVGTE-IKVVPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68532.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FAXQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04013.1 Length: 380 Range 1: 97 to 359 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSRFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06644.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREDRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42096.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPQLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITXEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL K I ++PRR Sbjct 241 LLWKGEGAVLAKVGAD-IKIIPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68484.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQXNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88872.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITAEQEIQFLHAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04095.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:110/271(41%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22171.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42980.1 Length: 293 Range 1: 1 to 263 Score:209 bits(532), Expect:2e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELAHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE+ N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVESMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68571.1 Length: 288 Range 1: 1 to 263 Score:209 bits(531), Expect:2e-62, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:166/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ PG+ Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAXFLLKLAARWPVRVLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHLQTTELQKQILKIQNF-----------QVYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04072.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42069.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:2e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQTKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20957.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREARDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04015.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04030.1 Length: 380 Range 1: 97 to 359 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21146.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IQVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03972.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK K I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTK-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04387.1 Length: 380 Range 1: 97 to 366 Score:212 bits(539), Expect:2e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKVIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42979.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:2e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEKFHS+ + L +F P +VA++I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKFHSNIKELXHKFGJPNLVAKQIVNTCAQCQQKGEAIHGQVNAEJGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVVVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08077.1 Length: 290 Range 1: 1 to 263 Score:209 bits(531), Expect:2e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNMKELAHKFGLPQLVAKQIVNSCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51498.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:2e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPNLVARQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITAEQEIQFLQAKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGSD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04392.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42079.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNIKELTHKFGIPKLVARQIVNTCAQCQQKGEAMHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ GIP NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGIPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06633.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22060.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06660.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21159.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06635.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28294.1 Length: 299 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEGHEKYHGNVKELVHKFGIPRLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q +E + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVEMVAWWVGIEQTFGVPYNPQSQGVVEGTHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACO81761.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNIKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEGMHHHLKKQISKIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQETQFLHTKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05601.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YYK+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYKEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05978.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06622.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06626.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06637.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03401.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05011.1 Length: 379 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42058.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNXQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFXEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNRHLKNQIDRIRDQANTIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEXQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL K + I ++PRR Sbjct 241 LLWKGEGAVLAKVGTE-IKVIPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16554.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L F +P++VA +I CP C+ +GE V GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHTNVKELTHRFGIPQLVARQIVNTCPQCQQKGEAVHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLAXRWPITHLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDKIREQANTIETXVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQRKNSTFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGXD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06625.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05269.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22052.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HSD + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSDVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05054.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGMGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK E + I +VPRR Sbjct 337 LLWKGEGAVILKVETE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22275.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ + G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNVELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHQLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20969.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +QK++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQKVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98955.1 Length: 288 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:112/275(41%), Positives:166/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEATHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVESMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04318.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98930.1 Length: 288 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:113/275(41%), Positives:167/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEPMHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07170.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASKWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68574.1 Length: 288 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:111/264(42%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQXFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ + I +VPRR Sbjct 241 LLWKGEGAVVIQDKGE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42973.1 Length: 293 Range 1: 1 to 263 Score:209 bits(531), Expect:3e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEATHHRLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D++WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQQWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06631.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08070.1 Length: 290 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANXVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + Y A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQYLQAKNSKLKNFRVYFREGRDQLWKGPWG 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VP+R Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPKR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05056.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VAE+I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAEQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03346.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VAE I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAERIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05100.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22153.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L ++T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWSITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42951.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNMKELVHKFGIPQLVARQIVNTCPQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNXKKFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04398.1 Length: 380 Range 1: 97 to 359 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ + G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNVELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06743.1 Length: 380 Range 1: 97 to 366 Score:211 bits(538), Expect:3e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22089.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:3e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:170/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05631.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWAITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16549.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P+IVA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNMKELTHKFGIPQIVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTIETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88865.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNIKELSHKFGLPTLVARQIVNSCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03305.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:3e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06671.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:3e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITRLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83210.1 Length: 297 Range 1: 1 to 263 Score:209 bits(531), Expect:4e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPXNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVIPRR 263 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68495.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68496.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:4e-62, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05670.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRRPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03367.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRRPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05090.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPCNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Simian-Human immunodeficiency virus] Sequence ID: AIU65655.1 Length: 290 Range 1: 1 to 260 Score:208 bits(530), Expect:4e-62, Method:Compositional matrix adjust., Identities:110/261(42%), Positives:159/261(60%), Gaps:2/261(0%) Query 6 RIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQM 65 +IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G WQM Sbjct 1 KIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGTWQM 60 Query 66 DCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKN 125 DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF + Sbjct 61 DCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFAS 120 Query 126 QKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCL 185 Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+HC+ Sbjct 121 QEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCM 180 Query 186 NFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRVEY 244 NFK+RG +G M P E I + + F + +YY++ +D+ WKGP + + Sbjct 181 NFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLW 240 Query 245 WGQGSVLLKDEEKGIFLVPRR 265 G+G+V+LK I +VPRR Sbjct 241 KGEGAVILKVGTD-IKVVPRR 260 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22082.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51514.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:4e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCTQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21157.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMIAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21126.1 Length: 380 Range 1: 98 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/270(40%), Positives:167/270(61%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + +T S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQTNSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07075.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLVSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20906.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGK 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04269.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42100.1 Length: 293 Range 1: 1 to 263 Score:208 bits(530), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNIKELSHKFGLPKLVARQIVNSCAQCQQKGEATHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETLVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04071.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05643.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69035.1 Length: 288 Range 1: 1 to 279 Score:208 bits(529), Expect:4e-62, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASEFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07155.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16586.1 Length: 282 Range 1: 1 to 263 Score:208 bits(529), Expect:4e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A +L +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNSQLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06643.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRAGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22114.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C RGE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQRGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04027.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLVSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07081.1 Length: 380 Range 1: 97 to 366 Score:211 bits(537), Expect:4e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR R + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKARIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20822.1 Length: 380 Range 1: 97 to 359 Score:211 bits(537), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S+++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIESIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AGP05175.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:5e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 YLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCTQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L VT L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPVTHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKKFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04007.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKXIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21802.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 FK+Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FKSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03397.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VAE+I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAEQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22223.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07088.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG++G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGKIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22262.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETTVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06036.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPSE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21078.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVSKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRCPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05983.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQVVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98944.1 Length: 288 Range 1: 1 to 263 Score:208 bits(529), Expect:5e-62, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:166/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEATHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP E+ T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAESGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVESMNKNLKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05617.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C RGE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQRGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTXIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05022.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGGWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06641.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04105.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWRGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Simian-Human immunodeficiency virus] Sequence ID: AHW98952.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:5e-62, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFRLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVKTIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05005.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21022.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21149.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21763.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22308.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03343.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:108/267(40%), Positives:170/267(63%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12170.1 Length: 300 Range 1: 7 to 265 Score:208 bits(530), Expect:5e-62, Method:Compositional matrix adjust., Identities:113/271(42%), Positives:164/271(60%), Gaps:24/271(8%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P IWQMD Sbjct 7 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEPMHGQVDCSPEIWQMD 66 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 67 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 126 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 127 TMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 186 Query 187 FKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKDQKDK 234 FK++G +G E I Q++ L+IQ++ +YY+D +D Sbjct 187 FKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRDSRDP 235 Query 235 KWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 WKGP ++ + G+G+V+++D+ + I +VPRR Sbjct 236 IWKGPAQLLWKGEGAVVIQDKGE-IKVVPRR 265 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05944.1 Length: 380 Range 1: 97 to 374 Score:211 bits(536), Expect:5e-62, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:170/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDDGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K +T S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQTNSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+LK + I +VPRR + + + E D Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKDSGGGKELD 374 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20820.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F++PR+VA++I C C RGE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFSIPRLVAKQIVDTCDKCHQRGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + + +VPRR Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42982.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:6e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIRDQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFQVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42947.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:6e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCTQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D++WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQQWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77004.1 Length: 288 Range 1: 1 to 279 Score:207 bits(528), Expect:6e-62, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04065.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04049.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04057.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04061.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04073.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04077.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20932.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04996.1 Length: 379 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASGWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07025.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05363.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKTVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20945.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20843.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04085.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03332.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVARWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRISEQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05033.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSVETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06676.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHRKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFRNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus - agm.tan-1] Sequence ID: AAC57052.1 Length: 1067 Range 1: 783 to 1052 Score:222 bits(566), Expect:6e-62, Method:Compositional matrix adjust., Identities:113/271(42%), Positives:178/271(65%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++DR+EEA+ +H+K+H++ Q++R F +P +VA+EI CP C+IRGE + GQ+ G+ Sbjct 783 FLDRMEEAQESHDKYHTNWQFIRDAFGIPALVAKEIVAACPKCQIRGEPIHGQVDASVGV 842 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGFL A++I +ET T K LL++I +T+L TDNGPN Sbjct 843 WQMDCTHLEGKIIIVAVHVASGFLEAEVIARETGKETAKFLLKIISRWPITKLHTDNGPN 902 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + ++H GIP NPQSQ VE+ N LK I+K + L+ A+ +A Sbjct 903 FVSQEVQTICWWGQVEHTTGIPYNPQSQGSVESMNRQLKETIEKIREDCAFLETAVLMAC 962 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFK++G +G M P E I + +++ + QK+ +YY++ ++ WKGP Sbjct 963 HIHNFKRKGGIGGMTPAERLINMITTQLEIQHIQTQQQKISNFKVYYREGREPVWKGPAT 1022 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V++K+ E+ + +VPRR + + E Sbjct 1023 LLWKGEGAVVIKEGEE-LKVVPRRKAKIIKE 1052 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04050.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22200.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNXITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83213.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:6e-62, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L+ +F +P++VA++I C LC+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELQHKFGIPQLVAKQIVNTCSLCQQKGEAIHGQVNSEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPRETGRQAALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+H G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWIGIEHTFGVPCNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERIINMIATEQEIQFLQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42082.1 Length: 293 Range 1: 1 to 263 Score:208 bits(529), Expect:6e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGKQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y++ +D WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITAEQEIQFLQAKNSKLKNFRVYFRXGRDHLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K + I +VPRR Sbjct 241 LLWKGDGAVIVKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16830.1 Length: 288 Range 1: 1 to 279 Score:207 bits(528), Expect:6e-62, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHSNWRAMASDFNLPSVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03368.1 Length: 380 Range 1: 97 to 374 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+LK + I +VPRR + + + E D Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKDYGGGKESD 374 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05025.1 Length: 380 Range 1: 97 to 359 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22122.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21770.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:6e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLTSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98947.1 Length: 288 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L + L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPIRVLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIRHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGCTAGERLIDMLASQIQTTELQKXILKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05390.1 Length: 380 Range 1: 97 to 366 Score:211 bits(536), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42962.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAXNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06750.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHYLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21085.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05374.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07091.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21143.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVSKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21102.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03981.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L ++T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWSITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGMGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05337.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK+ I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKIQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYRKGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04064.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06739.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06670.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21020.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07157.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05605.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42095.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNADLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A +L +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSRLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05059.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKTVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04405.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D++WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQQWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07136.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16561.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPTLVAKQIVNTCAQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQSKNSKFKKFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42128.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNIKELAHKFGLPKLVARQIVNSCTQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQS+ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSRGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16552.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNTCTQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIXRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKKFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05612.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05017.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07102.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22194.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETTVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42106.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP +VA++I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNMKELAHKFGLPNLVAKQIVNXCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06720.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22046.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + LA+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLLAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEMQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03379.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21083.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05607.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07156.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04051.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22290.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07090.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVHMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22210.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ GIP NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGIPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05996.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMTTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22327.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:7e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKXGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12762.1 Length: 271 Range 1: 1 to 263 Score:207 bits(526), Expect:7e-62, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P+++A +I C C+ GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKFHSNIKELSHKFGIPKLIARQIVNSCTQCQQXGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPXETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + + + + +A+ Sbjct 121 FXSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMHHHLKNQISRIRDQANTXETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +++ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRBQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGAD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05264.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05300.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05567.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05572.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05608.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22190.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20861.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04399.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21182.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASGWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVRMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03286.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22238.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05036.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04267.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + + + Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMVV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR R + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKARIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22184.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK GI +VPRR Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRR 359 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16569.1 Length: 296 Range 1: 1 to 263 Score:207 bits(528), Expect:8e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20829.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06731.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21087.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21088.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21092.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21094.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21096.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42072.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:8e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELCHKFGJPQLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E +I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERFINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88864.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:8e-62, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNSCTQCQQKGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + Y + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQYLQTKNSRFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+VL+K + I ++PRR Sbjct 241 LLWKGDGAVLVKVGTE-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05283.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21819.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVNTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07083.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04323.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/267(40%), Positives:168/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVSAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +R Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIRFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03327.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20915.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21084.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06749.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITRLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05669.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GIK G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIKQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRKQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22236.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21816.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVSKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05255.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22182.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04000.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:8e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQETQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22320.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNSRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42949.1 Length: 293 Range 1: 1 to 263 Score:207 bits(528), Expect:9e-62, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNXKELSHKFGLPKLVAKQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNSKLXNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05085.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21147.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPRE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21162.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05946.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04062.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05032.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06715.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22225.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20909.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFQVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20971.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22096.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20853.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22313.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07099.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05953.1 Length: 380 Range 1: 97 to 359 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07041.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTAPFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21124.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21180.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20888.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05023.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20880.1 Length: 380 Range 1: 97 to 366 Score:210 bits(535), Expect:9e-62, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07130.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFRFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05373.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22091.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:9e-62, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLKGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGTVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21105.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:9e-62, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE V GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAVHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21117.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVETMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05040.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03971.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPRE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04337.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYRKGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05945.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGVMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22111.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21154.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + V + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIVKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88868.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELAHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05640.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C RGE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQRGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88870.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEKFHS+ + L +F +P++VA +I C C+ +GE V GQ+ G+ Sbjct 1 FLERIEPAQEEHEKFHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAVHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I QE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVISQESGRQTALFLLKLASRWPITHLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82584.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82705.1 Length: 288 Range 1: 1 to 279 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHDKYHSNWKAMAGEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70918.1 Length: 288 Range 1: 1 to 279 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20863.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGSDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21039.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFRNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06032.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F++PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFSIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADJ00429.1 Length: 288 Range 1: 1 to 270 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYXILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNNELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28465.1 Length: 299 Range 1: 1 to 263 Score:207 bits(528), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ LG+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTLGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21119.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22134.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAXQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22049.1 Length: 379 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHADNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83214.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L+ +F +P++VA++I C LC+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELQHKFGIPQLVAKQIVNTCSLCQQKGEAIHGQVNSEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPRETGRQAALFLLKLAGRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+H G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWIGIEHTFGVPCNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERIINMIATEQEIQFLQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03998.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + +F + +YY++ +D+ WKGP Sbjct 277 HCMDFKRRGGIGDMTPAERLVNMITTEQEIHFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06727.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWRGEGAVILKAGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21172.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:110/272(40%), Positives:169/272(62%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L ++T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWSITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQSQQSK-NSKFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22076.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVNELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETTVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20901.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05985.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKXLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05357.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q S+ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKSS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28417.1 Length: 299 Range 1: 1 to 263 Score:207 bits(528), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ RGE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQRGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05675.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKTVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06653.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKHSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04408.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTAPFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16571.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F LP++VA++I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGLPQLVAKQIVNSCDKCQQKGEAVHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFXEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51502.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +P++VA++I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHERYHSNVKELTHKFGIPQLVAKQIVNTCAQCQQKGEAIHGQVNTEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22113.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06752.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQADSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03334.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ + G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAKLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42094.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGLPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16572.1 Length: 296 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F P++VA++I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGJPQLVAKQIVNSCDKCQQKGEAXHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFXEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEXMNHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMXTTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05298.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05650.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ LG+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTLGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42109.1 Length: 293 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNTCXQCQQKGEAIHGQVNAAVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRYTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITAEQEIQFLQAKKSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20986.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04320.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LMWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21177.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20960.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASKWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03313.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20955.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVVSGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06657.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKHFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20876.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05949.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05662.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMTTTEQDIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05614.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQXFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR+ + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRNAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22088.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20826.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21131.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04288.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07035.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQTKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20857.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98938.1 Length: 288 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C +GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPAVVAKEIIASCPKCHTKGEAMHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04295.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIILMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07084.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGAPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04396.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKTKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03371.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21158.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEILFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22063.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05652.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20973.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21015.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIILVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ GIP NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGIPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03414.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03983.1 Length: 379 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42081.1 Length: 293 Range 1: 1 to 270 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSBVKELSHKFGLPKLVARQIVNTCNQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNLHLKNQISKIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQXLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I ++PRR + + + Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRRKAKIIKD 270 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16565.1 Length: 296 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S + + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSTETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKXLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05594.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21012.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21035.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22098.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04385.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06015.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04011.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22321.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHRKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22071.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22079.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22092.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03289.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FIEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03279.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03297.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03301.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03357.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03376.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22269.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21030.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22218.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22068.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRKQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21831.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04081.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21173.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22213.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20894.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28428.1 Length: 299 Range 1: 1 to 263 Score:207 bits(527), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C CR +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCRQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22117.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQASSIETIVLTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05358.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F++PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFSIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22081.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05998.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMTTTEQEIQFQQSKNSKFKNFRAYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05301.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YYK+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYKEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21170.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21171.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21174.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21175.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21178.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05990.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLELASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22281.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05319.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20989.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04112.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20846.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21034.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21042.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21111.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42945.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNMKELIHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42970.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNVKELSHKFRLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV +GF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQIDCTHLEGKIIIVAVHVANGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K + I +VPRR Sbjct 241 LLWKGDGAVIIKVGSE-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04086.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03391.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06687.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03404.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03413.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03974.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04270.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04271.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22289.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20848.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06753.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20898.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FASQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21820.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21784.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06008.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVDMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03351.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06055.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04326.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDECHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06729.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07028.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22301.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03390.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07024.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21185.1 Length: 380 Range 1: 97 to 359 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04275.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20868.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20980.1 Length: 380 Range 1: 97 to 366 Score:210 bits(534), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21785.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05340.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIGQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07096.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L ++T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWSITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRTREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06737.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05106.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04389.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20835.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKTKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08076.1 Length: 290 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F LP++VA++I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKFHSNVKELSHKFGLPQLVAKQIVNSCTQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWGLVIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I +VPRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20851.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05088.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05367.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20985.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06002.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLELASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKVIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22312.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04116.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04091.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04093.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05379.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLELASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22215.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21165.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21765.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05004.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03382.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03396.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04070.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILRVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05044.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20874.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04299.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05311.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPRE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04314.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L+TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLRTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21788.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21840.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03976.1 Length: 379 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04981.1 Length: 379 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04986.1 Length: 379 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04991.1 Length: 379 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05003.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04280.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04287.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20891.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04335.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGMGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06718.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKXSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKTKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05018.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03363.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22048.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05633.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04285.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADK35691.1 Length: 288 Range 1: 1 to 279 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05006.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42987.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELAHKFGLPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05355.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22271.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALLLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21777.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05552.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LMWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20947.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07044.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05020.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07164.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06664.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEILFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06038.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05086.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05316.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07056.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04979.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22266.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03370.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20904.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21873.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07052.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03395.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05964.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03996.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21188.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C RGE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQRGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22147.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04274.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22233.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWRGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22196.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20890.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20838.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05391.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRLTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22139.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04272.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07068.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05063.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22085.1 Length: 380 Range 1: 98 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:109/270(40%), Positives:168/270(62%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04386.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08068.1 Length: 290 Range 1: 1 to 270 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNIKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKSQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQTKNSRLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I ++PRR + V + Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRRKAKVVKD 270 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42975.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05114.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05002.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:169/271(62%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHERYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22061.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLRLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05050.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20996.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05568.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21014.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05107.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05560.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05595.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21793.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNITTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42065.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKFHSNXKELSHKFGIPKLVAKQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTIETIVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPXERLINMITTEQEIQFLQXKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04993.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPHNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04994.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIVAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06717.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRISEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03298.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20948.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHRLKTQIDRVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05103.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETLVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07030.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05937.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03412.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIIHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ LG+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTLGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04357.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05048.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:1e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVDAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMIAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98936.1 Length: 288 Range 1: 1 to 263 Score:207 bits(526), Expect:1e-61, Method:Compositional matrix adjust., Identities:112/267(42%), Positives:168/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TD+GPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDSGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQARDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E I + +IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQ---TTELQKQILKIQKFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ + I +VPRR Sbjct 238 PAQLLWKGEGAVVIQDKGE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03984.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21809.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04330.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05979.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETMVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04333.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22278.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04273.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06684.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IEVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04982.1 Length: 379 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08073.1 Length: 290 Range 1: 1 to 263 Score:207 bits(526), Expect:2e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGFPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T L++L +T L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALLLVKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05072.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVPMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05656.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04356.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21823.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06711.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEMQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21049.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21199.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGGMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04090.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20942.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQINKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04324.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04334.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03312.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVRMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05570.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGKGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22164.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07104.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03325.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21801.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05267.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05361.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22062.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06742.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20895.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22268.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04094.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGKQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22106.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04369.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21002.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07123.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07138.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06014.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05268.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07152.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06724.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21836.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06624.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERXVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWEGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05580.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05051.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05951.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07127.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05321.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FASQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20885.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22065.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRVQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07105.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05102.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03295.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVETCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05936.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05987.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04104.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21082.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05344.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03338.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFQVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05678.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05641.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07158.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07051.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07160.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20907.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05336.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERSVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20951.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVSKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 W+MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WRMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22086.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21774.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVGTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21794.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21795.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05959.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ + + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEAKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06714.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05592.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05644.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLXKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06666.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQNGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06710.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22145.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05345.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05368.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05043.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03285.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03287.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03331.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03381.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03407.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22318.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22180.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05941.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07053.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05293.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSENSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37196.1 Length: 288 Range 1: 1 to 279 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAGCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04379.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06654.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20949.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05378.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07039.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21128.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALLLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05372.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20923.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVTSGFIEAEVIPQETGGQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Simian-Human immunodeficiency virus] Sequence ID: AIU65658.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAGRLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03317.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06033.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IEVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21887.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04351.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLATRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03336.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07036.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05067.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03352.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05963.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05976.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05977.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21008.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21857.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGKWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07085.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNTITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20999.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05555.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22264.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGETIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06656.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ADB82817.2 Length: 1010 Range 1: 724 to 992 Score:221 bits(562), Expect:2e-61, Method:Compositional matrix adjust., Identities:112/269(42%), Positives:166/269(61%), Gaps:1/269(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++R+EEA+ +H+K+HS+ + LR EFNLP +VA++I +CP C+I GE GQ+ GI Sbjct 724 FLERVEEAQEDHDKYHSNWKQLREEFNLPTLVAKQIINQCPKCQIHGEPKHGQVNADLGI 783 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF Q++ +ET T LLQL + ++ TDNGPN Sbjct 784 WQMDCTHLEGKVIIVAVHVASGFTETQVLKEETGKQTALFLLQLGARWPIQQVHTDNGPN 843 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++GI+H G+P NPQSQ +VEN N LK I + + L+ A+A+A Sbjct 844 FISQAFAAACWWLGIEHTTGVPYNPQSQGVVENKNRQLKDTITQVREDAQRLETAVAMAT 903 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H LNFK+RG +G M P E + + ++ Y K +YY++ D WKGP Sbjct 904 HILNFKRRGGIGDMTPSERIVNMINTELEIKYLQQKISKFSGFKVYYREGADPSWKGPAT 963 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRV 270 + + G+G+V++K + + +VPRR + + Sbjct 964 LLWKGEGAVVIKLDTGDLKVVPRRKAKVI 992 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04375.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20860.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06738.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20821.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16550.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGXD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05627.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03280.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05263.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIKKQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22206.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03349.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22282.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06045.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06705.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07034.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42110.1 Length: 293 Range 1: 1 to 263 Score:207 bits(526), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCXQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05676.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03987.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07111.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22208.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQPKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05371.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21826.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05305.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03320.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04056.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07061.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22149.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFENFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05271.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05272.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKXIXDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05315.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22209.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWRGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05626.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDC+H GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCSHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRRPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07139.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05575.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06748.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05280.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05619.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42083.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRHTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03319.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06659.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05313.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06054.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07022.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21018.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21201.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTXQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21169.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTTQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05970.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42124.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++ A +I C C+ RGE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKFHSNIKELSHKFGIPKLXARQIVNSCTQCQQRGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ+T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQQTGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNGHLKKQISRIRDQADTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I + PRR Sbjct 241 LLWKGEGAVIVKVGXD-IKIXPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06004.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITSEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05282.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21089.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQVVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03316.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIEIIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05326.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGGMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06001.1 Length: 380 Range 1: 97 to 366 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05306.1 Length: 380 Range 1: 97 to 359 Score:209 bits(533), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68879.1 Length: 288 Range 1: 1 to 279 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP+IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPQIVAKEIVASCSKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76293.1 Length: 289 Range 1: 1 to 280 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:1/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDTSGDIKVVPRRKAKIIRDYGKQMAGDD 280 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05296.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20953.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22090.1 Length: 380 Range 1: 98 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/270(40%), Positives:168/270(62%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03353.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFQVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42120.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNMKELSHKFGLPKLVARQIVNSCXQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05318.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07079.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21099.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLRTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06708.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03399.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04303.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42983.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22286.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06060.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28445.1 Length: 299 Range 1: 1 to 263 Score:207 bits(526), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q +E + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVEMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V +K + I +VPRR Sbjct 241 LLWKGEGAVTIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05270.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03315.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDECHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET TV LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTVLFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05284.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04035.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76519.1 Length: 288 Range 1: 1 to 266 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05351.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIPFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20925.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFAIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Rabbit endogenous lentivirus type K] Sequence ID: AZY88388.1 Length: 1110 Range 1: 831 to 1101 Score:221 bits(563), Expect:2e-61, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:163/271(60%), Gaps:0/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A +H K+HSD YLR +F+LP+IVAE+I + CP C +G + PG+ Sbjct 831 FLEHIETATDDHAKWHSDVSYLRQQFSLPKIVAEQIIKNCPKCVHKGGTTPHISRSGPGL 890 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH+ ++I+VA+ +G LWA++IP+ETA TV +L+L ++ L TDNGPN Sbjct 891 WQMDVTHYEARLILVAIETSTGLLWAKLIPKETAQETVWGILELQNLFHIQALHTDNGPN 950 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++ GL Y+ I H G P NPQSQ +VE AN +LK + KF +++ L LAL Sbjct 951 FTAERVTGLCRYLNIDHTTGTPYNPQSQGMVERANQSLKQEMDKFADVVQTIEARLQLAL 1010 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 LN K+RG +G P E YI Q ++ K + +Y+ K WKGP + Sbjct 1011 IALNQKKRGGIGGYTPTERYIHQRWQELEQTLQLQKFKDKKLFCFYRLPNSKDWKGPTTI 1070 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 + G+G+V++ EKGI +P+RH+R VP P Sbjct 1071 FWKGEGAVVIDTPEKGIISLPQRHVRMVPAP 1101 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05012.1 Length: 379 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIXQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68516.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68517.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68518.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68519.1 Length: 293 >integrase, partial [Simian immunodeficiency virus] Sequence ID: AZR68520.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNRAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILK-VGTDIKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05047.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06691.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVTSGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FXSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04009.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNMKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPHNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05559.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16560.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCTQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51518.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELVHKFGLPQLVAKQIVNTCTQCQQKGEAIHGQVNADLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE+ N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVESMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLMNMITTEQEIQFLQSKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I +VPRR Sbjct 241 LLWKGEGAVLVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06688.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06689.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04391.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >integrase protein, partial [Simian-Human immunodeficiency virus] Sequence ID: AIU65597.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ G Sbjct 1 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FASQEVKMVAWWAGIEHTFGVSYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK I +VPRR Sbjct 241 LLWKGEGAVILKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42964.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSTFKNFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22041.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:172/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ PG Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAEPGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKINIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLYTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07133.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEEIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + V + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIVKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21883.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIITD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21195.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQTVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK K I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTK-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05629.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C RGE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQRGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAKVIPQETGRQTALFLLKLASRWPITHLHTDNSAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ GIP NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGIPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIILMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06702.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVQMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06678.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05314.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05109.1 Length: 380 Range 1: 98 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/263(41%), Positives:163/263(61%), Gaps:2/263(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 338 LWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21123.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTAPFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21045.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22140.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCTNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04076.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETMVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08074.1 Length: 290 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88867.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FIERIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13701.1 Length: 288 Range 1: 1 to 279 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05094.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22316.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22231.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05087.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGMIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+D +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRDGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21086.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22224.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTTQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82896.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37223.1 Length: 288 Range 1: 1 to 279 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKXIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I ++PRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVIPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04370.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21152.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22197.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETXRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04317.1 Length: 380 Range 1: 98 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/270(40%), Positives:165/270(61%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+H Sbjct 218 TSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05999.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAGLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06639.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREXRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51497.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPNLVAKQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEVQFLQSKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03979.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFMEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21775.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05672.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04306.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05554.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHXEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +QK++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQKVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05092.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGKGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22059.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03419.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03421.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20911.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20972.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42068.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21787.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ + + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEAKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03310.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42091.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22234.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21029.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05660.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGVMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05055.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04395.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07144.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSNNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07166.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22202.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETXRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21060.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05097.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTLIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21033.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04293.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04350.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04336.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04341.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVSWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04990.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03300.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03314.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08078.1 Length: 290 Range 1: 1 to 270 Score:206 bits(524), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P +VA++I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNMKELVHKFGIPNLVAKQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQAKTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E S + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERSTMTHSPEQEIQFLQAKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I ++PRR + + + Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRRKAKLIKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04311.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04363.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04406.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05994.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKXRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28424.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTLQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28457.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNEKELVHKFGIPQLVAKQIVNSCDKCQQKGETIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04069.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04098.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05037.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04372.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03385.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07161.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04089.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16504.1 Length: 301 Range 1: 1 to 268 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/269(40%), Positives:166/269(61%), Gaps:7/269(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+H G+P NPQSQ +VE N+ LK I + + SL+ + +A Sbjct 121 FTSQDVKMVAWWVGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSLETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKD-----QKDKKW 236 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ W Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNSKFKNFQVYYREGRGYRGRDQLW 240 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 KGP + + G+G+V++K + I +VPRR Sbjct 241 KGPGELLWKGEGAVIIKVGTE-IKVVPRR 268 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03985.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03292.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHYLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21027.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04310.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVARQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22078.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:168/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E ++ ++ ++ Q ++ KL +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMFTTEQEIQFQQSKNS---KLKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + G+G+V+LK + I +VPRR Sbjct 334 PGELLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03986.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05325.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVAPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21054.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQKEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03288.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03294.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04033.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04038.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04999.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05681.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07142.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03333.1 Length: 380 Range 1: 97 to 362 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+LK + I +VPRR + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAK 362 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21894.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04404.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05389.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDLTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04354.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20941.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEAKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22244.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05968.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYSEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04355.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDPCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21778.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22306.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07107.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05940.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:2e-61, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:168/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKSKNFR---VYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42113.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNMKELSHKFGIPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLHSKNLKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28478.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:2e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07042.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHRLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03359.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06039.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04316.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22265.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCVNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22157.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05014.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07172.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREDRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04008.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQVVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42978.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRHTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLLNMITTEQEIQFLQAKDSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42952.1 Length: 293 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIGQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Rabbit endogenous lentivirus type K] Sequence ID: AZY88398.1 Length: 1110 Range 1: 831 to 1101 Score:221 bits(562), Expect:3e-61, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:163/271(60%), Gaps:0/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A +H K+HSD YLR +F+LP+IVAE+I + CP C +G + PG+ Sbjct 831 FLEHIETATDDHAKWHSDVSYLRQQFSLPKIVAEQIIKNCPKCVHKGGTTPHISRSGPGL 890 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH+ ++I+VA+ +G LWA++IP+ETA TV +L+L ++ L TDNGPN Sbjct 891 WQMDVTHYEARLILVAIETSTGLLWAKLIPKETAQETVWGILELQNLFHIQALHTDNGPN 950 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++ GL Y+ I H G P NPQSQ +VE AN +LK + KF +++ L LAL Sbjct 951 FTAERVTGLCRYLNIDHTTGTPYNPQSQGMVERANQSLKQEMDKFADVVQTIEARLQLAL 1010 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 LN K+RG +G P E YI Q ++ K + +Y+ K WKGP + Sbjct 1011 ITLNQKKRGGIGGYTPTERYIHQRWQELEQTLQLQKFKDKKLFCFYRLPNSKDWKGPTTI 1070 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 + G+G+V++ EKGI +P+RH+R VP P Sbjct 1071 FWKGEGAVVIDTPEKGIISLPQRHVRMVPAP 1101 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03995.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07125.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTTLFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22276.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20833.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04025.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IEVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05573.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKSKNFR---VYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03290.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03383.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04291.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04340.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20854.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04402.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22317.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21808.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22205.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGFL A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFLEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTEXK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20990.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04002.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04006.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04019.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04066.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88862.1 Length: 294 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Rabbit endogenous lentivirus type K] Sequence ID: AZY88393.1 Length: 1110 Range 1: 831 to 1101 Score:221 bits(562), Expect:3e-61, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:163/271(60%), Gaps:0/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A +H K+HSD YLR +F+LP+IVAE+I + CP C +G + PG+ Sbjct 831 FLEHIETATDDHAKWHSDVSYLRQQFSLPKIVAEQIIKNCPKCVHKGGTTPHISRSGPGL 890 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH+ ++I+VA+ +G LWA++IP+ETA TV +L+L ++ L TDNGPN Sbjct 891 WQMDVTHYEARLILVAIETSTGLLWAKLIPKETAQETVWGILELQNLFHIQALHTDNGPN 950 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++ GL Y+ I H G P NPQSQ +VE AN +LK + KF +++ L LAL Sbjct 951 FTAERVTGLCRYLNIDHTTGTPYNPQSQGMVERANQSLKQEMDKFADVVQTIEARLQLAL 1010 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 LN K+RG +G P E YI Q ++ K + +Y+ K WKGP + Sbjct 1011 ITLNQKKRGGIGGYTPTERYIHQRWQELEQTLQLQKFKDKKLFCFYRLPNSKDWKGPTTI 1070 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEP 273 + G+G+V++ EKGI +P+RH+R VP P Sbjct 1071 FWKGEGAVVIDTPEKGIISLPQRHVRMVPAP 1101 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04276.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCHKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04992.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04053.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03978.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06017.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04012.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05277.1 Length: 380 Range 1: 97 to 359 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21079.1 Length: 380 Range 1: 97 to 366 Score:209 bits(532), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81302.1 Length: 282 Range 1: 1 to 279 Score:206 bits(523), Expect:3e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IXVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03356.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06712.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKHIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05680.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEALHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L+TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLRTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28280.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C CR +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCRQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDITPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28274.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28286.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06630.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK++S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYYSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07049.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07050.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07059.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07078.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07116.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +S++ + + + Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQASSIETIVLMTV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKVIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04045.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGGMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05262.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03377.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85416.1 Length: 288 Range 1: 1 to 279 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05957.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVXMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21798.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22300.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04286.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIMVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21807.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04082.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNTITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21176.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04097.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22050.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04377.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05074.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NF++RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFERRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKTIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04325.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKAVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28412.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28442.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28471.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03281.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVRELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21876.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22287.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIALMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04292.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07141.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42088.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ Q L +F LP++ A +I C C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKYHSNVQELSHKFGLPKLXARQIVNTCAQCQQKGEAMHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQAITIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLHAKBSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28418.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28430.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28438.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28468.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28481.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20845.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06043.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDEIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFTNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22084.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03324.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05366.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04020.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+++LK + I +VPRR Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21144.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22241.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22183.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04060.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMDFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22299.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04410.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20844.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05322.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07134.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKKRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05938.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16546.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L F +P++VA +I CP C+ +GE + GQ+ G+ Sbjct 1 FLESIEPAQEEHEKYHSNMKELIHRFAIPQLVARQIVNTCPQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + Q +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNQNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05384.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20914.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVPMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05564.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04298.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAGLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERSVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21055.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42111.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVRELSHKFGIPNLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03991.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:111/265(42%), Positives:166/265(62%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S P K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNP-KFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22057.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20875.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22304.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV +GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVANGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07097.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQPKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05375.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06700.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07076.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03380.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03303.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03321.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03350.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04329.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05093.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21773.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20964.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05939.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05286.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21047.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06706.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22309.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLNTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03326.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21077.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21776.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEATHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05674.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IEVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42125.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ RGE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQRGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ + T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQGSGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMHHHLKKQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLHAKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16553.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA++I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELVHKFGIPQLVAKQIVNTCTQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTDQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03296.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSHVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20935.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21829.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28414.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28422.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28439.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28449.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28451.1 Length: 299 Range 1: 1 to 263 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04995.1 Length: 379 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:110/272(40%), Positives:168/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQSQQSK-NSKFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06051.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22291.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPTTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05955.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04283.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21052.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21073.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21064.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22314.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL++ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKIASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03988.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNMKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07167.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERSVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28467.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQGVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05566.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05095.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFRFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28413.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGAE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28429.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42114.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAXVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMAAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42102.1 Length: 293 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42116.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVAKQIVNTCAQCQQKGEAIHGQVNADLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12152.1 Length: 303 Range 1: 6 to 268 Score:206 bits(525), Expect:3e-61, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C IRGE + GQ+ PG+ Sbjct 6 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIANCPKCHIRGEPIHGQVDCSPGV 65 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP E+ T LL+L V + TDNGPN Sbjct 66 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAESGQETAYFLLKLAARWPVKVIHTDNGPN 125 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 126 FTSAXXKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 185 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 186 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFRVYYRDSRDPIWKGPAQ 245 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 246 LLWKGEGAVVIQDKGD-IKVVPRR 268 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28278.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28411.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28415.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28419.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28421.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28282.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04029.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04037.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04052.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04074.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04075.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22201.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDPCHKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05642.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAGRLVNMTTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22270.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNIKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07037.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21038.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05324.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05657.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18226.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHSNWRAMASDFNLPSVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVH SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHXASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06048.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05658.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22322.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNIITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21197.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03309.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/266(41%), Positives:164/266(61%), Gaps:6/266(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRIYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRR 265 + + G+G+V+LK E K +VPRR Sbjct 337 LLWKGEGAVILKVGTEXK---VVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07033.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21040.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLANMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05057.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21848.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05654.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVDAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04010.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNMKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20827.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVVKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05620.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFMLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07146.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06029.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGRIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22130.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21815.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21093.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22294.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22108.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22151.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06744.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEPEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I KF + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKFREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGGMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21783.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03293.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLRLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98949.1 Length: 288 Range 1: 1 to 263 Score:206 bits(523), Expect:3e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDKAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPXV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSTAVKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGCTAGERLIDILASQIQTTELQKQILKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22261.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22152.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVAGGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05624.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAT68795.1 Length: 1007 Range 1: 721 to 991 Score:220 bits(560), Expect:3e-61, Method:Compositional matrix adjust., Identities:112/271(41%), Positives:170/271(62%), Gaps:1/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++R+EEA+ +HEK+H + + LR E+ LP ++A++I +CP C+ RGE GQ+ GI Sbjct 721 FLERVEEAQEDHEKYHGNWKQLRDEYQLPTLIAKQIITQCPKCQTRGEPTHGQVDASMGI 780 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH KIIIVAVHV SG++ +I+P ET T LLQL VT++ TDNGPN Sbjct 781 WQMDCTHLENKIIIVAVHVASGYIETKILPAETGKETALFLLQLGARWPVTQIHTDNGPN 840 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ ++GI+H G+P NPQSQ +VE+ N LK I++ + L+ A+A+A Sbjct 841 FISQPVKAACWWLGIEHTTGVPYNPQSQGVVESKNRILKDTIKQIRDDAERLETAVAMAT 900 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + +NFK+RG +G M+P E + + I+ KL+ +YY++ D WKGP Sbjct 901 YIINFKRRGGIGDMSPIERLVNMITTEIETKTLQQKISKLLGFKVYYREGADPTWKGPAT 960 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+ K E I +VPRR + + E Sbjct 961 LLWKGEGAVVCKTEVGDIKVVPRRKAKVIKE 991 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05556.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE + HEK+HS+ + L +F +PR+VA++I C C +GE V GQ+ G Sbjct 97 FLEKIEPTQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAVHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LMWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07082.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE-LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E L I + + + + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVIMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05299.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSPGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D++WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQRWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05343.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07047.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03409.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21021.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05667.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21100.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85241.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:3e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQJDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSNSVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQIRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELHKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28448.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91466.1 Length: 278 Range 1: 1 to 278 Score:205 bits(522), Expect:3e-61, Method:Compositional matrix adjust., Identities:111/279(40%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVEAMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21824.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVDMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03410.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTTQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05935.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAXEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05341.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHNNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22087.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTRIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNIITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22214.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05610.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51500.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:3e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNTCSQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEVQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGND-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22232.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDPLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22297.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21196.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVAPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07072.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:3e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21818.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Simian immunodeficiency virus SIVsun] Sequence ID: CAI99181.1 Length: 270 Range 1: 22 to 270 Score:205 bits(522), Expect:4e-61, Method:Compositional matrix adjust., Identities:100/249(40%), Positives:156/249(62%), Gaps:1/249(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A H KFH++ L+ +F++P IVA++I +C C+ +GE + GQ+ + GI Sbjct 22 FIEKIEPAVEEHGKFHNNAASLQEQFDIPLIVAKQIVNECAQCQQKGEAITGQVDVSIGI 81 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH K+IIVA+HV SGF+ A+++P ET T LL+L V + TDNGPN Sbjct 82 WQIDCTHMEEKVIIVAIHVASGFMVAEVLPNETGKATATWLLKLCAXWPVKHIHTDNGPN 141 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F ++ +E + ++GI+H GIP NPQSQ +VE N LK I + + L A+ +AL Sbjct 142 FISKDVEAVCWWLGIQHTTGIPYNPQSQGVVEAKNKVLKQIITRIREDAQELKTAVLMAL 201 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFKQRG LG M E +I + ++ Y + K++ +YY++ +D +WKGP + Sbjct 202 HIHNFKQRGGLGGMTAAERFINMINADLESQYLQKLNSKILKFKVYYREGRDPQWKGPAQ 261 Query 242 VEYWGQGSV 250 + + G+G+V Sbjct 262 LLWKGEGAV 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04068.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04302.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42101.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:109/268(41%), Positives:167/268(62%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNIKELAHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 HC+NFK+RG +G M P E + +QE IQ + A K +Y+++ +D+ WK Sbjct 181 HCMNFKRRGGIGDMTPSERLXNMITTEQE---IQ-FLQAKNSKFQNFRVYFREGRDQLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP + + G G+V++K I +VPRR Sbjct 237 GPGELLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42948.1 Length: 293 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +P++VA +I KC C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKYHSNIKELVHKFGIPQLVARQIVNKCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + ++ +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQINRIREQSNTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACB36814.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21138.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C CR +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCRQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKSAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21837.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLASRWPITRLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWVGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVVLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03340.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20830.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21056.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVLPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPHNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRREAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05016.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28283.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06649.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDGIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20927.1 Length: 380 Range 1: 98 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:166/270(61%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQAYSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03994.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21896.1 Length: 380 Range 1: 97 to 359 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03398.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20870.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAMHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28485.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q + + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVRMVAWWVGIEQTFGVPYNPQSQGVVEAMNHRLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28432.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + +GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWRVGIEQTFGVPYNPQSQGVVEATNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06030.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22037.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04108.1 Length: 380 Range 1: 97 to 366 Score:209 bits(531), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH KIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLESKIIIVAVHVASGFIGAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28486.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKILKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07101.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22116.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04103.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16315.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKXIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28483.1 Length: 299 Range 1: 1 to 263 Score:206 bits(524), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21001.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:172/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04378.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKSKNFR---VYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42953.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L ++ L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPISHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21059.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04034.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVDAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21017.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06650.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWEGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21851.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAGLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04001.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20836.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03360.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05070.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20878.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36611.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:110/283(39%), Positives:174/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +GR + E I + IQ + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQ---TKALQKQITEIQNFRVYYRDNRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04980.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22251.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRKQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLANMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21125.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCTNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22324.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05598.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07031.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIKEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21861.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05274.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04004.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRAGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05026.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VAE+I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAEQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCTNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06628.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVRELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21164.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP+SQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPRSQGVVEAMNHHLKTQINRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22295.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22298.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05276.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05292.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKMEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21003.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06047.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04401.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTPIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04111.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22323.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:172/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20910.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFENFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04268.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSENSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06035.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ + + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEAKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03358.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06674.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NF++RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFRRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03283.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S + + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSTETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06061.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05078.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII+AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIIAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21814.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWGAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04403.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH+ SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHMASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04040.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20968.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04113.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03389.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKITIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVRMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03308.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22189.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQVVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05989.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07057.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04371.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21053.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++E + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVEMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84492.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85176.1 Length: 288 Range 1: 1 to 279 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTHF GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHFEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20962.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIMVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05317.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPTTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28340.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIELAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21832.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAEGLGNMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21860.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQVVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIALMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21183.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGIVEAMNHHLETQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42974.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:4e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELAHKFGLPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18216.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:4e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21090.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHIDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05973.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20871.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKAVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22105.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR++A++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLIAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+L+ + I +VPRR Sbjct 337 LLWKGEGAVILRVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21187.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:4e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE + HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPTQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHRLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07117.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKIQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21797.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMNRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21006.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKKLVFKFGIPRLVAKQIVDTCNKCHRKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDDGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76084.1 Length: 277 Range 1: 1 to 270 Score:205 bits(521), Expect:5e-61, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRCSAGERIIDIIATDIQTTELQKHISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17671.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGXSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22104.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05984.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQGQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05338.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21075.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22118.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16547.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K + I +VPRR Sbjct 241 LLWKGDGAVIVKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29182.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98937.1 Length: 288 Range 1: 1 to 263 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVXVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIKH+ G P NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWAGIKHEFGXPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04322.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVSWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06046.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21875.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06681.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42074.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP +VA++I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELAHKFGLPLLVAKQIVNTCAQCQQKGEAVHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE+ N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVESMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQSKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51501.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 + ++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FXEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRHTALFLLKLASRWPITHLHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22245.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05630.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKMEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21076.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIALMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21091.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGEIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28314.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A KL +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKLKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21140.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETERQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07147.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVSAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06730.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKTVAWWAGIEQTFGVPYNPQSQGVVDAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21844.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08067.1 Length: 290 Range 1: 1 to 263 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28464.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIGQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28482.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNAKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLTAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06006.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFTEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21194.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04296.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHRHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04308.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVQVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21850.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVRELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04360.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGVGAVILKVGTE-IEVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04365.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVSWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21120.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVAPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21136.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCINFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21103.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCTNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21880.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDGIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20892.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06673.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVGTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NF++RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFRRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51499.1 Length: 293 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNTCSQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLXGKVIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIXRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEVQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGND-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20934.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21192.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21193.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21198.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21139.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I K + +S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDKIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06041.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDGIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06662.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGAPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21811.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIADTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVAGGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05639.1 Length: 380 Range 1: 97 to 359 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVIELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06741.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:169/275(61%), Gaps:10/275(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 HC+NFK+RG +G M P E + +QE Q S K +YY++ +D+ WK Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQSQQSKNS----KFKNFRVYYREGRDQLWK 332 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 GP + + G+G+V+LK + I +VPRR + + + Sbjct 333 GPGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20837.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPCE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05075.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81812.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84966.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDRCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21762.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIYGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05969.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21000.1 Length: 380 Range 1: 97 to 366 Score:208 bits(530), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28433.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28436.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28470.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + +GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWRVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20981.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05112.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP+SQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPRSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03982.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24729.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAXVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRBYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28420.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05030.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05041.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05042.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05053.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05096.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06005.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQDEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTRIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+L+ + I +VPRR Sbjct 337 LLWKGEGAVILRVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21203.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAVVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05101.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03992.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVARWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09962.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89497.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPXVVAKEIVAXCDRCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21153.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+ IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEAIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42988.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELIHKFGIPHLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKKFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84515.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84771.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84899.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87837.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81820.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:5e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21072.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGVN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20931.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28477.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:5e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGNMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05038.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06658.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHDKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFENFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20920.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:5e-61, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHYLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05648.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEQYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20991.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTV-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05295.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42963.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20965.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH KIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLESKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASGWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20879.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22285.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20869.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21767.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH+ SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHMASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPDE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04114.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAEVFPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21155.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03311.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKSFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05077.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21835.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKHHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21893.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKHHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42090.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNVKELCHKFGLPTLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60969.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:172/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI +C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIIAKEIVARCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + NFK++G +G + E + + IQ KL +YY++ +D WKGP + Sbjct 181 YIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKLQNFRVYYRENRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05942.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22097.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05019.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVGTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05290.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20988.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIAAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21095.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21191.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVTKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28285.1 Length: 299 Range 1: 1 to 263 Score:206 bits(523), Expect:6e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQPFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03278.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05663.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20834.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVAPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22187.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16536.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQ TA T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFVEAEVIPQATARQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE + LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEGMHXHLKNQISKIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + Y + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAEELINMITTEQEIQYLQSKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82316.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82072.1 Length: 288 Range 1: 1 to 279 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCNKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03411.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIAHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21769.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04985.1 Length: 379 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMDHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42984.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKFHSNVKELAHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNTELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQESGRXTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E I + + F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNXKRRGGIGDMTPAERLINMITAEQEIQXFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28431.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06679.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHQEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPCNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05307.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FAPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04343.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS+ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSRGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21048.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06034.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06746.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 W+MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WRMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05279.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPR+ + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRKKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22102.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKITIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04383.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPTTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22242.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTPIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05369.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPKLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05013.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04021.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20950.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29276.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04361.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IEVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05110.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71899.1 Length: 286 Range 1: 1 to 279 Score:205 bits(521), Expect:6e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASEFNLPSIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05591.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06000.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ LG+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTLGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03372.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20976.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHKKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +QK++ + + GI+ G+P NPQSQ +V+ N+ LK I K + S++ + +A+ Sbjct 217 FTSQKVKMVAWWAGIEQTFGVPYNPQSQGVVKAINHHLKTQINKIKEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28440.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28441.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28466.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:6e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42170.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04374.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21888.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21206.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04304.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:169/267(63%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ W+G Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWRG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20979.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHKKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +QK++ + + GI+ G+P NPQSQ +V+ N+ LK I K + S++ + +A+ Sbjct 217 FTSQKVKMVAWWAGIEQTFGVPYNPQSQGVVKAINHHLKTQINKIKEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03347.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +G+ + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGKAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20828.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22137.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89520.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:6e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06740.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGAEVIPQKTGRQTALFLLKLANRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05588.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21109.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIAHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FISQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETMVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCINFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06719.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYSEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03369.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21127.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRTREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06040.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:6e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTLIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51516.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELTHKFGLPQLVAKQIVNTCAQCQQKGEAIHGQVNXEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20840.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEVIHGQANAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03417.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20873.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMDHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42084.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+++ K + I ++PRR Sbjct 241 LLWKGDGAIIAKVGTE-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76658.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + L +EFNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIEKAQEDHEKYHSNWRALASEFNLPAVVAKEIIASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05089.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06632.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42956.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELXHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRHTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A KL +Y++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLLNMITTEQEIQFLQAKDSKLKNFRVYFRXGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77649.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04364.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAVVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06713.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHXDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21796.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04067.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITRLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANLIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21009.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06025.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ + G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAKLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03999.1 Length: 379 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFO67882.1 Length: 289 Range 1: 1 to 280 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:1/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++++ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQENNSDIKVVPRRKAKIIRDYGKQMAGDD 280 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28450.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + +GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWRVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12767.1 Length: 271 Range 1: 1 to 270 Score:204 bits(520), Expect:7e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ + T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQXSGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE + LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMXHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + V + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIVKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04989.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIV VHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVVVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22185.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVAGGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05312.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05392.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIVQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29180.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVXMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22220.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLVGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVRTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20858.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVARQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21881.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFRQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22302.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVGTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPTERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRRAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11316.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPIVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIASDIQTKELQKQITNIQKFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05634.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + + + Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMTV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20917.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAMHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21028.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNDAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06692.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVTKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22193.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEGHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >polymerase, partial [Simian immunodeficiency virus] Sequence ID: AAD12147.1 Length: 1031 Range 1: 747 to 1025 Score:219 bits(558), Expect:7e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:175/280(62%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A H KFH++ + L +FNLP +VA++I C C+ +GE + GQ+ + GI Sbjct 747 FLEKIEPAVEEHSKFHNNAKDLEEKFNLPPMVAKQIVNDCANCQKKGEAITGQVDVSVGI 806 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G++II AVHV SGF+ A++IP ET T LL+L V ++ TDNGPN Sbjct 807 WQLDCTHLEGQVIINAVHVASGFMVAEVIPDETGKTTSHFLLKLCSRWPVKQIHTDNGPN 866 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + ++GI+H GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 867 FVSKEVQAVTWWIGIEHTTGIPYNPQSQGVVEAKNKVLKSIIERVREDAQQLKTAVLMAV 926 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFKQRG LG + P E +I + ++ Y + K++ +YY+ +D +WKGP + Sbjct 927 HIHNFKQRGGLGGLTPAERFINMINAELETQYLQKLNSKILKFKVYYRQGRDPQWKGPAQ 986 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++K+ E IF VPRR + V + P+ E Sbjct 987 LLWKGEGAVVVKEGE-NIFSVPRRKAKLVKDYGEGPKDSE 1025 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42103.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A Sbjct 121 FXSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTMETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQTKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51503.1 Length: 293 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17520.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21166.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04349.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03990.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68575.1 Length: 288 Range 1: 1 to 263 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C IRGE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIRGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSSAMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 N+K++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05031.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22107.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIAHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20978.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36591.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18159.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:110/281(39%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05046.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21104.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQGQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05071.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGNIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04393.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVEELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06672.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP+SQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPRSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78964.1 Length: 288 Range 1: 1 to 270 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGDRIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR + + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04347.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G + G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGTEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06009.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06020.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20997.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21150.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMSFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17626.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:7e-61, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06696.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05359.1 Length: 380 Range 1: 97 to 359 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK HS+ + L +F +PR VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKHHSNVKELVFKFGIPRPVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGK 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05561.1 Length: 380 Range 1: 97 to 366 Score:208 bits(529), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRTREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05039.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCKNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21081.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20926.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20928.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHKKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +QK++ + + GI+ G+P NPQSQ +V+ N+ LK I K + S++ + +A+ Sbjct 217 FTSQKVKMVAWWAGIEQTFGVPYNPQSQGVVKAINHHLKTQINKIKEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05383.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03302.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21129.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05098.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHKKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04380.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETTVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22319.1 Length: 380 Range 1: 98 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:165/270(61%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQVVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21046.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28444.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28473.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28474.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:7e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05653.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSHGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22240.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22101.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22181.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVANQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLVSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07046.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20940.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:7e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAS 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03362.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGVGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05638.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDEIREQANSIETIVLTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21804.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ ++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEVEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKSFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21859.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV +GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVANGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04101.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS+ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSRGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20823.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:172/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGETIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE+ N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVESMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+N K+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNSKRRGGIGDMTPAERVVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >Pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAF07325.1 Length: 1023 Range 1: 739 to 1017 Score:219 bits(558), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:175/280(62%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H KFH++ + L +F+LP +VA++I C C+ +GE + GQ+ PGI Sbjct 739 FLEKIEPAQEEHSKFHNNAKDLEEKFHLPPMVAKQIVNSCNKCQTKGEAITGQVDTSPGI 798 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G++II A+HV GF+ A++IP ET T LL+L V ++ TDNGPN Sbjct 799 WQIDCTHMEGQVIINAIHVACGFMVAEVIPDETGKTTANFLLKLCSRWPVQQVHTDNGPN 858 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + ++GI+H GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 859 FVSKEVQAVTWWLGIEHSTGIPYNPQSQGVVEAKNKVLKQIIERVREDAQQLKTAVLMAV 918 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFKQRG LG ++P E +I + ++ Y + K++ +YY+ +D +WKGP + Sbjct 919 HIHNFKQRGGLGGLSPAERFINMINADLETQYLQKLNSKILKFKVYYRQGRDPQWKGPAQ 978 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++K E IF VPRR + V + P+ E Sbjct 979 ILWKGEGAVVVK-EGDTIFSVPRRKAKLVKDYGEGPKDSE 1017 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28480.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:8e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05377.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVPTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04366.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21181.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05034.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVEPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21163.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12153.1 Length: 303 Range 1: 6 to 275 Score:205 bits(522), Expect:8e-61, Method:Compositional matrix adjust., Identities:110/271(41%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P + Sbjct 6 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAMHGQVDCSPEV 65 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 66 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 125 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 126 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 185 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 186 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQISKIQNFRVYYRDSRDPIWKGPAQ 245 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D + I +VPRR + + E Sbjct 246 LLWKGEGAVVIQD-KGDIKVVPRRKAKIIRE 275 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06667.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLVSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNSKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21011.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07120.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04301.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGMGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05308.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98952.1 Length: 288 Range 1: 1 to 263 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C RGE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHXRGEPMHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQEAAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98961.1 Length: 288 Range 1: 1 to 263 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/275(40%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWADIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42062.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCTQCQQKGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEXQFLXXKNXKLXNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGXD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28288.1 Length: 299 Range 1: 1 to 263 Score:205 bits(522), Expect:8e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGTPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVVIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06747.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVNLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03341.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22203.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP+R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPKRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36475.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +GR + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGRYSAGE--------RIXDIIASDJQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP R+ + G+G+V+++D+ I +VPRR + + GD+ Sbjct 233 PLWKGPARLLWKGEGAVVIQDKGD-IKVVPRRKXKIJXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12766.1 Length: 271 Range 1: 1 to 270 Score:204 bits(519), Expect:8e-61, Method:Compositional matrix adjust., Identities:103/271(38%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P+++A +I C C+ GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKFHSNIKELSHKFGIPKLIARQIVNSCTQCQQXGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQZTGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMXXHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + +F A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFFQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V++K I ++PRR + + + Sbjct 241 LLWKGEGAVIVKVGAD-IKIIPRRKAKIIKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03361.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIMVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03405.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTENGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04014.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04003.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII+AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIIAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92679.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:174/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + ++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TKELQKQITKFQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22279.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDHLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+++LK + I +VPRR Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17128.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22292.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17692.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFXVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04054.1 Length: 380 Range 1: 97 to 374 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP SQ +VE ++ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPPSQGVVEAMDHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+LK + I +VPRR + + + + E D Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKDYGGVKEVD 374 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22173.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04382.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGAPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05254.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVARQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17334.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSNXVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51496.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIXPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K + I ++PRR Sbjct 241 LLWKGEGAVLVKVGTE-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07140.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S + + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSXETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22305.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCCQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84480.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMXSDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42955.1 Length: 293 Range 1: 1 to 278 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEKFHS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKFHSNIKELAHKFGLPXLVAXQIVNTCXQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V++K I +VPRR + + + E D Sbjct 241 LLWKGEGAVVVKVGTD-IKIVPRRKAKIIXDYGGRQEXD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05947.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMSFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88866.1 Length: 293 Range 1: 1 to 270 Score:205 bits(521), Expect:8e-61, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCTQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSRLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + V + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIVKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21858.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04018.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06652.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-FKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20954.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:8e-61, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42944.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D++W+GP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSXFKNFQVYYREGRDQQWRGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22156.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05287.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18168.1 Length: 288 Range 1: 1 to 279 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07045.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06018.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20993.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29047.1 Length: 288 Range 1: 1 to 278 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP IVA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAM90222.1 Length: 1016 Range 1: 720 to 986 Score:219 bits(557), Expect:9e-61, Method:Compositional matrix adjust., Identities:111/267(42%), Positives:164/267(61%), Gaps:1/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A +HEK+HS+ +YLR ++ +P ++A+EI KC C+I GE GQ+ GI Sbjct 720 FMENIEPAVEDHEKYHSNWKYLRDQYKIPALLAKEIVNKCSKCQIHGEPKHGQVNAELGI 779 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+I+VAVHV SG++WA+IIPQET T LL+L VT L TDNGPN Sbjct 780 WQMDCTHLEGKVILVAVHVASGYVWARIIPQETGRQTALKLLELAATWPVTHLHTDNGPN 839 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F ++++E + I+H G+P NPQSQ +VEN N LK IQK E T L+ A+A A Sbjct 840 FISKELEAACWWANIQHSTGVPYNPQSQGVVENMNKQLKETIQKIRDEVTYLETAVAQAC 899 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + NFK++G +G M P E + ++ + + K +YY+ + W+GP Sbjct 900 YIHNFKRKGGIGDMCPTERLVNMIHTELETQHLNTQSSKFQKFRVYYRQGANPHWQGPAV 959 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++ + I VPRR + Sbjct 960 LLWKGEGAVVVQTQAGEIITVPRRKAK 986 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21810.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21061.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21842.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE V GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAVHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22144.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98945.1 Length: 288 Range 1: 1 to 266 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:110/270(41%), Positives:166/270(61%), Gaps:8/270(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C +GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHTKGEAIHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L + L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAXRWPIKILHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E I + +IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGCTAGERLIDMLASQIQ---TTELQKQILKIQKFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 P ++ + G+G+V+++D+ I +VPRR + Sbjct 238 PAQLLWKGEGAVVIQDKGD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ABU88863.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22267.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83205.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:167/264(63%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA++I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELVHKFGIPQLVAKQIVNTCTQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQS+ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSKGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTDQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21051.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12760.1 Length: 271 Range 1: 1 to 263 Score:204 bits(519), Expect:9e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPXLVARQIVNSCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQZTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMHHHLKNQISRIRXQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83207.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVQELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE+ N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPCNPQSQGVVESMNRHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSGRLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04300.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGAVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04279.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07063.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVNELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22288.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWEGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06003.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGXQXALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22172.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNIKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05081.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII+AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIIAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILRVGTE-IKVVPRRRAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21168.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIEIIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20983.1 Length: 380 Range 1: 97 to 358 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETLVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07173.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ ++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGVEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIGQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21758.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:107/273(39%), Positives:167/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIYGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTENK---VVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29219.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82915.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82934.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22038.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQADSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04407.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGEIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07027.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06693.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRPVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76421.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76297.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISXXVXAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D ++ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-DRDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09939.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42092.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:9e-61, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ Q L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVQELAHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22058.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAS 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06056.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:9e-61, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVXSGFIEAEVIPQETGXQXALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77183.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:110/291(38%), Positives:174/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 230 SRDPLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81753.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIVATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29153.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:9e-61, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABL67000.1 Length: 275 Range 1: 1 to 266 Score:204 bits(519), Expect:9e-61, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:171/279(61%), Gaps:13/279(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E IQ++ IQ++ +YY+D +D WKGP ++ Sbjct 181 FIHNFKRKGGIGGYSAGE-RIQKQITNIQNFR-----------VYYRDSRDPIWKGPAKL 228 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 229 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 266 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16543.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE+ N+ LK I + + + + + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVESMNHHLKNQISRIREQANTXETXVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I + PRR Sbjct 241 LLWKGXGAVIVKVGAD-IKVXPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04367.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSSVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05260.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T +LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALSLLKLASRWPITHLHTXNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKXQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21151.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28341.1 Length: 299 Range 1: 1 to 266 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V++K + I +VPRR ++ Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRREVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68568.1 Length: 288 Range 1: 1 to 266 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C +GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHTKGEAMHGQVDYSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L + L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPIRILHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGCTAGERLIDMLASQIQTTELQKQILKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D+ I +VPRR + Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68569.1 Length: 288 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:111/268(41%), Positives:164/268(61%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP IVA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPIVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FASATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +G E L Q ++ +Q I QK +YY+D +D WK Sbjct 181 FVHNFKRKGGIGGYTAGERILDILASQIQTTELQKQIFKI-QKFQ---VYYRDSRDPIWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP ++ + G+G+V+++D+ I +VPRR Sbjct 237 GPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AWF73458.1 Length: 287 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ L +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITNLQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNTE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20929.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F++PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFSIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLYTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + ++Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVHYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05310.1 Length: 380 Range 1: 97 to 358 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/263(41%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05015.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQAYSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21841.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELIFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29375.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16545.1 Length: 293 Range 1: 1 to 263 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELCHKFGLPQLVAKQIVNTCXQCQQKGEAIHGQVNAEXGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFXEAEVIPQETGRXTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQTFGVPYNPQSQGVVEAMNHHLKNQIGRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKKFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05346.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05954.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVDAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQKIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06062.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAVLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47156.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47168.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIANCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04031.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHQKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20966.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKCHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21772.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +G + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGGAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHPEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VPRR + + + Sbjct 337 LLWKGEGAVILK-VGTGIKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04297.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G + G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGHVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGGQTALFLLKLASRWPITRLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35946.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGISEAQDDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+++VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVVLVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42958.1 Length: 293 Range 1: 1 to 278 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFHS+ + L +F +P++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKFHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G G+ + K I +PRR + + + E D Sbjct 241 LLWKGDGAXIXKVGTD-IKXIPRRKAKIIKDYGGXQEMD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03335.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G + G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGTEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05266.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I + PRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVAPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05365.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQTDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03392.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCYQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12172.1 Length: 303 Range 1: 10 to 268 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/263(41%), Positives:164/263(62%), Gaps:8/263(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P IWQMD Sbjct 10 IDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEIWQMD 69 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 70 CTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 129 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 130 AMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 189 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKGPMRV 242 FK++G +G + I + +IQ + QK +++ +YY+D +D WKGP ++ Sbjct 190 FKRKGGIGGYTAGDRLIDMLASQIQ---TTELQKQILKIHKFRVYYRDSRDPIWKGPAQL 246 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+++D+ + I +VPRR Sbjct 247 LWKGEGAVVIQDKGE-IKVVPRR 268 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20855.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03366.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77107.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FVSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05602.1 Length: 380 Range 1: 97 to 359 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+ + + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEAKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21161.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNSAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47086.1 Length: 288 Range 1: 1 to 278 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQXTAYFILXLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDXXATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98925.1 Length: 288 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C+I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCQIKGEAIHGQVDYSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKTIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05360.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV+SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVDSGFIEAEVIPQETGRQTALFLPKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFQVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21885.1 Length: 380 Range 1: 97 to 366 Score:207 bits(528), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82931.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42105.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPNLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + +++ + ++GI+ G+P NPQSQ +VE+ N+ LK I + + +++ + +A+ Sbjct 121 FTSHEVKMVAWWVGIEQSFGVPYNPQSQGVVESMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07100.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKAGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22095.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQLVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + + + Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMTV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEREIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05024.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:111/272(41%), Positives:167/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIV VHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVTVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E I + IQ S K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQSQQSK-NSKFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98960.1 Length: 288 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/267(41%), Positives:167/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P I Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ----WLYYKDQKDKKWKG 238 NFK++G +G E I + +IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQ---TTELQKQIIKIQNFQVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ I +VPRR Sbjct 238 PAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03339.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIELAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05354.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK++G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRKGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77360.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16707.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16944.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42981.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQXKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07066.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVNLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21895.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSEFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85433.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIJVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68888.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08079.1 Length: 290 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNMKELVHKFGIPHLVAKQIVNTCPQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22204.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:166/273(60%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGXVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTEXK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20933.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L + +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKLGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHRLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29120.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78963.1 Length: 288 Range 1: 1 to 270 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGDRIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++L+D I +VPRR + + + Sbjct 241 LLWKGEGAIVLQDNSD-IKVVPRRKAKIIKD 270 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16570.1 Length: 295 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAVHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPXETGRQTALFLLKLAXRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMAAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIIKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26694.1 Length: 287 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQTKNLKFKNFQVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05104.1 Length: 380 Range 1: 97 to 358 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42168.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42721.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G +P E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSPGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20847.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE + LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMTHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05683.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHXDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEREIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04100.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV S F+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASEFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20937.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLAGKWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03365.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKSKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05659.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46335.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++ +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKXGIGRYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22111.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26692.1 Length: 301 Range 1: 1 to 263 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ H K+H + + L +F +P++VA++I C C+ +GE V GQ+ G Sbjct 1 FLEKIVPAQEEHGKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAVQGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FISQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04281.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 +C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 YCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21812.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 FTSQEVRMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70886.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76846.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDXCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16551.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGLPKLVARQIVNSCTQCQQKGEAIHGQVBAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKXKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05069.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03386.1 Length: 380 Range 1: 97 to 358 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22277.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09925.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09926.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09927.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09936.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09938.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04106.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42977.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNVKELTHKFGIPQLVARQIVNTCTQCQQKGEAIHGQVNTEVGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETTVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N+K+RG +G M P E I + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNYKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKKFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22110.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIAAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTGQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70315.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84500.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84759.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67518.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGISEAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21870.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22283.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 +C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 YCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21827.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQS+ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSRGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16548.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ W+GP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWRGPGD 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21043.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELET 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05288.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06698.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDDGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45717.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98926.1 Length: 288 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:166/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E I + +IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILATQIQ---TTELQKQILKIRKFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ I +VPRR Sbjct 238 PAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83209.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNTCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWAGIEQSFGVPYNPQSQGVVEAMNHHLKNQISKIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQSKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06661.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEPGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28312.1 Length: 299 Range 1: 1 to 263 Score:205 bits(521), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05668.1 Length: 380 Range 1: 98 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:162/263(61%), Gaps:2/263(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK RG +G M P E + + + F + +YY++ +D+ W+GP + Sbjct 278 CMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 338 LWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06663.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEEIEPAQEEHEKYHSNVKELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04063.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ +P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFRVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21825.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVKAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29260.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISSAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQXTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98956.1 Length: 288 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPTWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09947.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09967.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12160.1 Length: 298 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:165/267(61%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSANMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILTTHIQ---TTELQKQILKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D + I +VPRR Sbjct 238 PAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21066.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28275.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87918.1 Length: 288 Range 1: 1 to 279 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22325.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE + HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPVQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDC H GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCAHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03307.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04390.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANPIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04368.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAKVIPQEAGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46867.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQHFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22178.1 Length: 380 Range 1: 97 to 358 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/263(41%), Positives:162/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQLSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03418.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTV-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22217.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77696.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVQAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77384.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11312.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISASVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDMQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82544.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22311.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21071.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQXALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWRGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22253.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04309.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28307.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28318.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AGP05169.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEVHEKYHSNIKELAHKFGIPKLVARQIVNTCTQCQQKGEAIHGQVNAELGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIGRIRDQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLMNMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20912.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLGNMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+ +LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05558.1 Length: 380 Range 1: 98 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:164/270(60%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + YY+ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYRAGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21884.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22054.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20963.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELIFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04332.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLETQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85479.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNALKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29200.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05381.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C + E + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKEEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04362.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSHGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21068.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAAHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09951.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98928.1 Length: 288 Range 1: 1 to 263 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/275(40%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98942.1 Length: 288 Range 1: 1 to 263 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQISKIQNFRVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDQGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21856.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G + G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGAEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03989.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEVIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20850.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQGQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20967.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPIAHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04376.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHPEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05105.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17965.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNJPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89518.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHVEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSSALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28416.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P + + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAKRLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82780.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42067.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ Q L +F P+IVA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVQELSHKFGXPKIVARQIVNTCAQCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPXERLINMITAEQEIQFLHXKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42075.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLXNKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05606.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKTIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04290.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05045.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVARQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21031.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHKKYHSNVKELVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20995.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22179.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLRLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VP R Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACL01263.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09928.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09930.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09931.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09933.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82821.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDRCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAIQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81766.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKIVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24559.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07124.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04409.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAGRLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05952.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFPLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GIK G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIKQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQPKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21854.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42986.1 Length: 293 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEXAQEEHEKYHSNIKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06058.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETMVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21205.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVGAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGAE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05975.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEIGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21886.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03374.1 Length: 380 Range 1: 97 to 358 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQMDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20884.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDICDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDDGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28326.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV GF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVAGGFIEAEVIPQETGRQTALLLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16205.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16206.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76443.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDLQXXXLQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22273.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06707.1 Length: 380 Range 1: 97 to 359 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLRAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06686.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRPVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21863.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +++ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRNQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76441.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29094.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AXR70235.1 Length: 303 Range 1: 1 to 265 Score:204 bits(520), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/266(41%), Positives:165/266(62%), Gaps:4/266(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAVHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKD--QKDKKWKGP 239 HC+NFK+RG +G M P E + + + +F A K +YY++ KD+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRGKDQLWKGP 240 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 GELLWKGEGAVIIKVGTE-IKVVPRR 265 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68856.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSPGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29344.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAXERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22074.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04312.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05275.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22035.1 Length: 380 Range 1: 97 to 366 Score:207 bits(527), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPXRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84863.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IRVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05961.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQTVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQGVKMVTWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07095.1 Length: 380 Range 1: 99 to 359 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/262(41%), Positives:162/262(61%), Gaps:2/262(0%) Query 5 DRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQ 64 ++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G WQ Sbjct 99 EKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVVTCDKCHQKGEAIHGRVNAELGTWQ 158 Query 65 MDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFK 124 MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 159 MDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFT 218 Query 125 NQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHC 184 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+HC Sbjct 219 SQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAVHC 278 Query 185 LNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRVE 243 +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 279 MNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELL 338 Query 244 YWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 339 WKGEGAVILKVGAE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03993.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLEKIEPAQEEHEKYHSSVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELRT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16391.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIASDIQTKELQKHITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09940.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP55580.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+G+ + GQ+ PGI Sbjct 1 FLDEIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQIKGKAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SGF+ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGFIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42292.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDJQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98946.1 Length: 288 Range 1: 1 to 263 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:166/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E I + +IQ + QK +++ +YY+D +D WKG Sbjct 181 FVHNFKRKGGIGGYTAGERLIDILASQIQ---TTELQKQILKIQKFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ I +VPRR Sbjct 238 PAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21792.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04059.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSSVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04307.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 +C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 YCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03282.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:1e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42066.1 Length: 293 Range 1: 1 to 270 Score:204 bits(519), Expect:1e-60, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FXSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSRFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+ ++K + I +VPRR + + + Sbjct 241 LLWKGDGAXIVKVGTE-IKVVPRRKAKXIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16531.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20825.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96755.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28927.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28132.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68572.1 Length: 288 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28316.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVEELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87755.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDYSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDXIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62767.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06042.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06053.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIV VHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVVVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07098.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84412.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKXIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87750.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03344.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11260.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11348.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84483.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46947.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTSQLQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05291.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20889.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ H+K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHKKYHSNVKKLVFKFGIPRLVAKQIVDTCNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06010.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+ G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42960.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76590.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82217.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQSKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22051.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 + ++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FXEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKXIVDTCDXCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP SQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPXSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSXNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK GI +VP R + + + Sbjct 337 LLWEGEGAVILK-VGTGIKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05991.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05647.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:168/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ W+G Sbjct 277 HCMNFKRRGGIGDMTPAERLANMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWEG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IEVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06647.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+ G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42070.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNXKELSHKFGIPKLVARQIVNTCXQCQQKGEAIHGQVDAEFGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIXRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28308.1 Length: 299 Range 1: 1 to 263 Score:204 bits(520), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/265(40%), Positives:165/265(62%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLR--IQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E I + IQ + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQGIQ-FLQAKNLKFKTFQVYYREGRDQLWKGPG 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 240 ELLWKGEGAVIVKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29353.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIXDIXATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05339.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEEIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21833.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 VTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05600.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S + + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTXIDRIREQANSXETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G + P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDITPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22259.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +G + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGGAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77273.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSATMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07129.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVGAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07070.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F + R+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGISRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03406.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAAHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLANMVTTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84910.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21186.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I QET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVITQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18281.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIVATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98929.1 Length: 288 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP IVA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPIVAKEIIANCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET LL+L + L TDNGPN Sbjct 61 WQMDCTHAEGKVIIVAVHVASGFIEAEVIPAETGQEAAYFLLKLAARWPIKILHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06651.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+ FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMYFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRREAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03973.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06059.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +V RR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVSRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACO81762.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNIKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQS +VE ++ LK I K + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSXGVVEGMHHHLKKQIXKIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQETQFLHTKNLKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11291.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11295.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDIQTKELQKQITNIQKFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04381.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVSWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAP----YELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAGRLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21130.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09948.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKKIIGQVKDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28202.1 Length: 288 Range 1: 1 to 279 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05058.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04353.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIAAVHVASGFIEAGVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71891.1 Length: 286 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VA HV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAAHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDMIATDIQIKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83203.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:166/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELIHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ IP NPQS+ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFSIPYNPQSRGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28289.1 Length: 299 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCNKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++G + G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGTEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35950.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I ++ ++ I Q Q +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITQIQNFQ-VYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05943.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE + LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMXHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28319.1 Length: 299 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIGRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60342.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05349.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWARIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06677.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCT GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTRLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETVVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07029.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLGKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26695.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+E+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETMVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQTKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28356.1 Length: 299 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRRPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28323.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28338.1 Length: 299 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHRLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCINFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22328.1 Length: 380 Range 1: 97 to 348 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:102/252(40%), Positives:157/252(62%), Gaps:1/252(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK 253 + + G+G+V+LK Sbjct 337 LLWKGEGAVILK 348 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87769.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQIRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46293.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20970.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20930.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR VA++I C C +GE + G++ G Sbjct 97 YLEKIEPAQEEHEKYHSNVKELVFKFGIPRRVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12168.1 Length: 299 Range 1: 6 to 267 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/263(41%), Positives:159/263(60%), Gaps:2/263(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P +WQMD Sbjct 6 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAMHGQVDCSPEVWQMD 65 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNG NF + Sbjct 66 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKXIHTDNGSNFTSA 125 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + GI+ + GIP NPQSQ +VE N LK I + + L A+ +A+ N Sbjct 126 AMKAACWWTGIQQEFGIPYNPQSQGVVEAMNKELKSIITQVRDQAEHLKTAVQMAVFVHN 185 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +GR E I + +IQ K+ +YY+D +D WKGP ++ + Sbjct 186 FKRKGGIGRYTAGERLIDILASQIQTTELQKQISKIQNFRVYYRDSRDPIWKGPAQLLWK 245 Query 246 GQGSVLLKDEEKGIFLVPRRHIR 268 G+G+V+++D+ I +VPRR + Sbjct 246 GEGAVVIQDKGD-IKVVPRRKAK 267 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81442.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36555.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29222.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00313.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDIQTAQLQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05980.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+ G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22195.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSPGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22148.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:167/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L EF +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFEFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+N K+RG +G M P E + ++ ++ Q S+ KL +YY++ +D+ WKG Sbjct 277 HCMNLKRRGGIGDMTPAERLVNMITTEQEIQFQQSKSS---KLKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20882.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQAALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTRIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21114.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +++ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRNQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05586.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIGEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREARDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13675.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHTNWRAMASDFNLPPVVAXEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKXITKLHNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82943.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05356.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDEIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERSVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89453.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDBSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76258.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWKAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVNTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 XIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-EXSDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21760.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNYHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03980.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21761.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18279.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVXSGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWXGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25138.1 Length: 288 Range 1: 1 to 278 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20872.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42127.1 Length: 293 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/268(40%), Positives:168/268(62%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAMHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEGMHHHLKNQISRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 HC+NFK+RG +G M P E I +QE +Q+ S KL +Y+++ +D+ WK Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQNKNS----KLKNFRVYFREGRDQLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP + + G G+V++K I ++PRR Sbjct 237 GPGELLWKGDGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68173.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRTMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 YIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68161.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26691.1 Length: 287 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTPLFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSVETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQNKKLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21868.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVDMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22042.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G + G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGTEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21132.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLRKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05061.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G MAP E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMAPAERLVNMITTEQEIQFQQSKNSKFKNFRVCYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76727.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05582.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNDAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FASQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05958.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKXVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05062.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKITIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQVDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42472.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWKAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVNTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01976.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESVNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17794.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22075.1 Length: 380 Range 1: 97 to 359 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03975.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L + +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKLGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04352.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANLIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81500.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12158.1 Length: 301 Range 1: 8 to 266 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/263(42%), Positives:162/263(61%), Gaps:8/263(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +H+K+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P +WQ+D Sbjct 8 IDQAQEDHDKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEVWQID 67 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 68 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 127 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 128 TMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 187 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKGPMRV 242 FK++G +G E I + IQ + QK ++Q +YY+D +D WKGP ++ Sbjct 188 FKRKGGIGGYTAGERIIDILASHIQ---TTELQKQILQIQNFRVYYRDSRDPIWKGPAQL 244 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+++D + I +VPRR Sbjct 245 LWKGEGAVVIQD-KGDIKVVPRR 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03364.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIIHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42961.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I + PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIXPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24751.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04109.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/274(39%), Positives:171/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21839.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIMVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21074.1 Length: 380 Range 1: 97 to 366 Score:207 bits(526), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ K I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHPKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84454.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVBCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09924.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRAYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77224.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82264.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAFFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQSKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05557.1 Length: 380 Range 1: 98 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/270(39%), Positives:166/270(61%), Gaps:2/270(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLVAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 338 LWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21889.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVSAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28461.1 Length: 299 Range 1: 1 to 263 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNTELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNSAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76883.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V+ + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVSTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIHKFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78966.1 Length: 288 Range 1: 1 to 270 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/272(39%), Positives:169/272(62%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L+ V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLVGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G++ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I ++I++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQIKELQKQII-KIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 240 KLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05665.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH KIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEDKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42130.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEKFHS+ + L +F +P +VA +I CP C +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKFHSNIKELSHKFGIPTLVARQIVNTCPQCHXKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+ IIVAVHV SGF+ A++IPQ+T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGRXIIVAVHVASGFIEAEVIPQQTGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVRMVAWWVGIEQSFGVPYNPQSQGVVEAMHHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92717.1 Length: 276 Range 1: 1 to 266 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINEAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16702.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21113.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKVIIVAVHVASGLIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22162.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/273(40%), Positives:169/273(61%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76355.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16526.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05382.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTAPFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGHGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22127.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVNPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05677.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQKDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84545.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDJQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28948.1 Length: 288 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20956.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGEIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS+ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSRGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04005.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21822.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81971.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIERAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17831.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81690.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07113.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFPLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28833.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29256.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71194.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPXIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16773.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06754.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIVPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06623.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 RQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+M+ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEMKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22222.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLPKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWTGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82803.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVVQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68964.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05108.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +G+ + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGKAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLETQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06745.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFPLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22249.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21145.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42971.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07092.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSLGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42119.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNMKELSHKFGIPKLVARQIVNTCAQCQQKGEPIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLXGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQXFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20922.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKEPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04400.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+ +LK + I +VPRR + + + Sbjct 337 PLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI86569.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI86587.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68870.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85012.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAFFILXLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQSKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18243.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIVATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82881.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37199.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A++ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQVEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05331.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVXAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 W MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WLMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22307.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIMVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03348.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDKVREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITPEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWNGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82048.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D +WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPRWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85495.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44585.2 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVKDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05066.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNAKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NF++RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFRRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07087.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:167/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKSKNFR---VYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05960.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVSMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16634.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83516.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ V + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIVRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67581.1 Length: 288 Range 1: 1 to 266 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGISEAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05971.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFPLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06716.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTXNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05060.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22103.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05010.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/272(40%), Positives:168/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVVKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+ IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIKAEAIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQASSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLR--IQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S P K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNP-KFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21007.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77713.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06655.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAY 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21202.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22303.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEQIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQRSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05621.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPMRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21764.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTCGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59661.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68170.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03345.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYRSNVKELVFKFGMPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05362.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16304.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCXKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAAKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDXIASDJQTKELQKQSTKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16804.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29198.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29271.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28259.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82268.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20936.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22066.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+R +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRRGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20916.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + +G+V+LK + I +VPRR + + + Sbjct 337 LLWKREGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24599.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76794.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYTPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83505.1 Length: 288 Range 1: 1 to 279 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVSDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIRDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04348.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVGAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05661.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCT GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTRLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06640.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28345.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28363.1 Length: 299 Range 1: 1 to 263 Score:204 bits(518), Expect:2e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I + C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVKSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29139.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68980.1 Length: 288 Range 1: 1 to 278 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16167.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVNCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04997.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:2e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82586.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68960.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18314.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12142.1 Length: 302 Range 1: 9 to 267 Score:204 bits(519), Expect:2e-60, Method:Compositional matrix adjust., Identities:111/264(42%), Positives:162/264(61%), Gaps:10/264(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P +WQ+D Sbjct 9 IDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEVWQID 68 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 69 CTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 128 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 129 TMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAVFVHN 188 Query 187 FKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +G E I Q ++ +Q I QK +YY+D +D WKGP + Sbjct 189 FKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKI-QKFQ---VYYRDSRDPIWKGPAQ 244 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ + I +VPRR Sbjct 245 LLWKGEGAVVIQDKGE-IKVVPRR 267 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07137.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALLLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22310.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP+SQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPRSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05664.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNLKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21779.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYRSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKKRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21798.1 Length: 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21818.1 Length: 263 Range 1: 1 to 263 Score:202 bits(515), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQIKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46899.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13696.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAFFLLKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71243.1 Length: 287 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:111/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + +YY+D +D WKG Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKALQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22064.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIRDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91519.1 Length: 278 Range 1: 1 to 278 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:170/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A++ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQVEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QJC70355.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77862.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDRCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAELIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E K I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENKDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81591.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMISTDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAO61897.1 Length: 288 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/275(39%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 N+K++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05289.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVTWWAGIEQTFGVPYNPQSQGVVGAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03299.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VPRR + + + Sbjct 337 LLWKGEGAVTLKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22072.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGEIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLVAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76754.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70313.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18053.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDEAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60443.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGRYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82781.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20913.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05332.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAY 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03304.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16556.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPNLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLAGRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQXKNSKFKKFRVYYREGRDQLWKGPGX 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+VL+K I ++PRR Sbjct 241 LLWKGDGAVLVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28335.1 Length: 299 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVANQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKDQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + ++ + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITIEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06721.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIGQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04384.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIGDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTPQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04016.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:166/273(60%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAHEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25448.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71145.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:111/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + +YY+D +D WKG Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKALQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17029.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTAKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01979.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLXGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKRMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29043.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84799.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHDKYHSNWKAMAGEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIVATDIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05599.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05073.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAMHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAESLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22293.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20883.1 Length: 380 Range 1: 97 to 374 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAEIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+LK + I +VPRR + + + E D Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKDYGGGKESD 374 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04102.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVSYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21069.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L + +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKLGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21869.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRTQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03375.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVTSGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82529.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKXVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06680.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 RCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21112.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+ +V+LK + I +VPRR + + + Sbjct 337 LLWKGEEAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05080.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + Q+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHRQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08075.1 Length: 290 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELCHKFGIPKLVARQIVNSCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G G+V++K I ++PRR Sbjct 241 PLWKGDGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42969.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28443.1 Length: 299 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I + PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVAPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17608.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDYSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03415.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIGQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05304.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/275(40%), Positives:168/275(61%), Gaps:10/275(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVTKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 HC+NFK+RG +G M P E + +QE Q S K +YY++ +D+ WK Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQSQQSKNS----KFKNFRVYYREGRDQLWK 332 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 GP + + G+G+V+LK + I +VPRR + + + Sbjct 333 GPGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04345.1 Length: 380 Range 1: 98 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G W Sbjct 98 LEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDECHQKGEAIHGQVNAELGTW 157 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 158 QMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANF 217 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+H Sbjct 218 TSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAVH 277 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 278 CMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGEL 337 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 338 LWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28475.1 Length: 299 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + +GI+ G+P NPQSQ +VE N+ LK I + + S++ + + Sbjct 121 FTSQDVKMVAWRVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMTT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12159.1 Length: 299 Range 1: 6 to 264 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:162/271(59%), Gaps:24/271(8%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P +WQ+D Sbjct 6 IDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEVWQID 65 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 66 CTHVEGKVIIVAVHVASGFIKAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 125 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 126 TMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 185 Query 187 FKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKDQKDK 234 FK++G +G E I Q++ L+IQ++ +YY+D +D Sbjct 186 FKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRDSRDP 234 Query 235 KWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 WKGP ++ + G+G+V+++D + I +VPRR Sbjct 235 IWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 264 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07109.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKEPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06697.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03291.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIRDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91391.1 Length: 278 Range 1: 1 to 278 Score:203 bits(516), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96548.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIVDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76304.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIKH+ GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKHEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77654.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQHFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20974.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTAPFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVCYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05027.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+ IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEAIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + + +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-VKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21817.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 C+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 RCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04096.1 Length: 380 Range 1: 97 to 359 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F++Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FRSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+ +L+ + I +VPRR Sbjct 337 LLWKGEGAGILRVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51515.1 Length: 293 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMAAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQELQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGSD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04998.1 Length: 379 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMDHHLKTQIDRIRELANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFRNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWRGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84479.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22228.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22163.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNIKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNSKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51506.1 Length: 293 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNVKELCHKFGLPTLVARQIVNTCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLXSRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + +GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWXIGIEQTFGVPYNPQSQGVVEAXNHHLKNQISRIREQXNTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + Y + KL +++++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQYLQSKNSKLKNFRVFFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I +VPRR Sbjct 241 LLWKGEGAVLVKVGSD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29234.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17633.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82923.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTXKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01978.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03394.1 Length: 380 Range 1: 97 to 366 Score:206 bits(525), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIYKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + +G+V+LK + I +VPRR + + + Sbjct 337 LLWKEEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADR79241.1 Length: 289 Range 1: 1 to 280 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:1/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNNSDIKVVPRRKAKIIRDYGKQMAGDD 280 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16218.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16815.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP56414.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPAVVAKEIVAXCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVXKIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKXIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17489.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+GSV+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGSVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89504.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHVEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTLRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16480.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01927.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGEQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42087.1 Length: 293 Range 1: 1 to 270 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P+IVA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNMKELSHKFGIPQIVARQIVNTCAXCQQKGEAIHGQVNADLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLXTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITAEQEIQFLQAKNSXLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + + + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12171.1 Length: 303 Range 1: 6 to 268 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:166/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ L ++F LP +VA+EI CP C I+GE + GQ+ P I Sbjct 6 FLEGIDQAQEDHEKYHSNWXALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEI 65 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 66 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 125 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 126 FTSAAMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 185 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + I + +IQ + QK +++ +YY+D +D WKG Sbjct 186 FVHNFKRKGGIGGYTAGDRLIDXLASQIQ---TTELQKQILKIHKFRVYYRDSRDPIWKG 242 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ + I +VPRR Sbjct 243 PAQLLWKGEGAVVIQDKGE-IKVVPRR 268 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84684.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17440.1 Length: 288 Range 1: 1 to 278 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22284.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPGLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16404.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDEIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81838.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28906.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06642.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVARQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVIMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05064.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + ++Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVHYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04042.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH KIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEDKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+++LK + I +VPRR Sbjct 337 LLWRGEGAIILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17722.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13708.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70819.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70900.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPAVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQITKIQKFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17488.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84445.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05330.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDXTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07062.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWRAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05000.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETLVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIEDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89447.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87879.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76504.1 Length: 288 Range 1: 1 to 278 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:172/280(61%), Gaps:4/280(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 + NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 YIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQIT-KIQHFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 ++ + G+G+V+++D+ I +VPRR + + + GD Sbjct 240 KLLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29400.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVGDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21845.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRQVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQPKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21032.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGETIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNLKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05353.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21867.1 Length: 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21886.1 Length: 263 Range 1: 1 to 263 Score:202 bits(515), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:168/275(61%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16502.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98935.1 Length: 288 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:111/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP IVA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPIVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IK + GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIKQEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNF-----------QVYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35947.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGINEAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05597.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELET 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06012.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQXTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04026.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+++LK + I +VPRR Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21882.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/273(40%), Positives:166/273(60%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVDAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK E K +VPRR + + + Sbjct 337 PLWKGEGAVILKVGTETK---VVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07150.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE + LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMXHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21843.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE + HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPVQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16566.1 Length: 287 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/265(40%), Positives:164/265(61%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVXKFGIPQLVAKQIVNSCDKCQQKGEAXHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSVETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ--WLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + + F +KL Q +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFXQ-NKKLKFQNFQVYYREGRDQLWKGPG 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 240 ELLWKGEGAVIIKVGTD-IKVVPRR 263 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16557.1 Length: 293 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F LP +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHXNVKELSHKFGLPTLVARQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTAQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G++L K I ++PRR Sbjct 241 LLWKGEGAILAKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77621.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHNNWRAMASEFNLPPVVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNXLKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46493.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84518.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28213.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25133.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84697.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87685.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45844.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATNIQTTELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42910.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68578.1 Length: 288 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNITHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67584.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLHHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28852.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXSVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACL01280.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05294.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEEIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFQLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28339.1 Length: 299 Range 1: 1 to 263 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKVEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHRLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCINFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76427.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGAVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89469.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81773.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDMIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59850.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18200.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43275.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ KL +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRQLQKQITKLQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25439.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFXVYYRDSRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76081.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIXASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 XIHNFKRKGGIGGYSAGE--------RIVDIIASXIQXQELQKQITKIQNFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82917.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAARWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82930.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIXKAQEDHEKYHSNWRAMASDFNLPPIVAKEIXASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21010.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVEELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETMVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKISKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22112.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22077.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 LLRKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84532.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98934.1 Length: 288 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPQCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81546.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRBYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83537.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85476.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNALKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84677.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22073.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGGDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04044.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPKLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITYLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVGQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46405.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67475.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEEHEKYHSNWRSMASDFNLPPIVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH +GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLDGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L+ A+ +A+ Sbjct 121 FTSTVMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLETAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01975.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67570.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06019.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS+ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSRGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03355.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKSHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42086.1 Length: 293 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLIAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 +C+NFK+RG +G M P E I + + F A KL +Y+++ +D+ WKGP Sbjct 181 YCMNFKRRGGIGDMTPAERLINMITXDQEXQFLXAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K + I +VPRR Sbjct 241 LLWKGDGAVIVKVGXE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28219.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQVEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82074.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82427.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46627.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I S +Q + I QK + + +YY+D +D WKG Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIISTDMQ---TKILQKQISKIQNFRVYYRDNRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77348.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGPETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16743.1 Length: 288 Range 1: 1 to 278 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05646.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAGLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06022.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNSKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06757.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQXIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VP R Sbjct 337 LLWKGEGAVILKVGTE-IKVVPXR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04088.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22155.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05590.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGSIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20902.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDIGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42946.1 Length: 293 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + ++Y++ ++++WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVFYREGREQQWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85397.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16580.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK +++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIVEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84785.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84344.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04373.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANLIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21065.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFXLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGAVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20946.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +V+ N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVKAMNHHLKTQINRIKEQANSIETEVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42950.1 Length: 293 Range 1: 2 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/263(40%), Positives:162/263(61%), Gaps:2/263(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+W Sbjct 2 LEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVBAEXGVW 61 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 QMDCTH GK+IIVAVHV SGF A++I QET T LL+L +T L TDNGPNF Sbjct 62 QMDCTHLEGKVIIVAVHVASGFXEAEVIXQETGRQTALFLLKLASRWPITHLHTDNGPNF 121 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 +Q+++ + ++GI+ GIP NPQSQ +VE N+ LK I + + +++ + +A+H Sbjct 122 TSQEVKMVAWWIGIEQSFGIPYNPQSQGVVEXXNHHLKNQIXRIREQANTVETIVLMAVH 181 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRV 242 C+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP + Sbjct 182 CMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGEL 241 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G G+V++K I +VPRR Sbjct 242 LWKGDGAVIVKVGTD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76622.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKALQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09932.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA++I C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKKIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIKAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIGDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84457.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20893.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCGKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I QET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVILQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42115.1 Length: 293 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQKGEAIHGQVNAELGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLRAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HYMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70281.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQXRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25383.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDXIAXDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82176.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29168.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK+RG +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRRGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05009.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLERIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAEIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22158.1 Length: 380 Range 1: 96 to 359 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/265(40%), Positives:164/265(61%), Gaps:2/265(0%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPG 61 S++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 96 SFLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELG 155 Query 62 IWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGP 121 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG Sbjct 156 TWQMDCTHLEGRIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGA 215 Query 122 NFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALA 181 NF +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 216 NFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMA 275 Query 182 LHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPM 240 +HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 276 VHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRVQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05352.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F + R+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGISRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21879.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIV VHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVVVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPFTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76783.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGEYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82031.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85088.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVH+ SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHIASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81691.1 Length: 288 Range 1: 1 to 279 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXQLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QFD66664.1 Length: 267 Range 1: 1 to 266 Score:202 bits(515), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNGRAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06031.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:3e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + Q+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHRQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AXR70238.1 Length: 304 Range 1: 1 to 268 Score:204 bits(518), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/269(40%), Positives:165/269(61%), Gaps:7/269(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+ IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEXIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+H G+P NPQSQ +VE N+ LK I + + SL+ + +A Sbjct 121 FTSQDVKMVAWWVGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSLETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLY-----YKDQKDKKW 236 HC+NFK+RG +G M P E + + + +F A K +Y Y++ +D+ W Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFKNFQVYYREGRYREGRDQLW 240 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 KGP + + G+G+V++K + I +VPRR Sbjct 241 KGPGELLWKGEGAVIIKVGTE-IKVVPRR 268 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28336.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:3e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18052.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:3e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AGB52025.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61617.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13721.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGISEAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16441.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:3e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQVTKISKFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: QLK12819.1 Length: 523 Range 1: 231 to 500 Score:210 bits(534), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 231 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 290 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 291 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPVTHLHTDNGAN 350 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 351 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 410 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 411 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 470 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 471 LLWKGEGAVILK-VGTDIKVVPRRKAKIIKD 500 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28392.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVETMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28284.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q +E + ++GI+ G+ NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVEMVAWWVGIEQTFGVSYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P + + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAKRLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98958.1 Length: 288 Range 1: 1 to 263 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEATHGQVDYSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPTETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAIMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G LG E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGLGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01925.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22237.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHERYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81735.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGQAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNKITKLSKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47142.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKXLKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84669.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81618.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05628.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAI 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07135.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDIGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84782.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87680.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81363.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPXVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IRVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36533.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T ++L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYSILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIISSDJQXKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28353.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKTVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81878.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81811.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16341.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07069.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +++Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42288.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81905.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84398.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82907.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20896.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A HEK+HS+ L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKMEPAREEHEKYHSNVIELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07121.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ K I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHPKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: USW23893.1 Length: 292 Range 1: 1 to 279 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYYLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16704.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18088.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01965.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92736.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPSETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05625.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + +G+V+LK + I +VPRR Sbjct 337 LLWKREGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05632.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + +G+V+LK + I +VPRR Sbjct 337 LLWKREGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06723.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+R +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRRGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85242.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H + + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHXNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDIQTXELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21050.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NP+SQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPRSQGVVEAMNHHLKTQINKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12765.1 Length: 271 Range 1: 1 to 263 Score:202 bits(515), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ L +F +P +VA +I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIXELCHKFGIPNLVARQIVNTCAQCQQKGEATHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FXSQEVKMVAWWXGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03970.1 Length: 379 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVCYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28327.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28328.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28334.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18274.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:110/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18289.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQXEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPGETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71203.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61382.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96660.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76134.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKITNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87878.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELXKXIXKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77389.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UXM24870.1 Length: 284 Range 1: 1 to 278 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIDKAQEDHEKYHSNWRTMADEFNLPSVVAKEIVACCDKCQLKGEAMHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPNF Sbjct 61 QLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 TSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E I + IQ K+ +YY+D +D WKGP ++ Sbjct 181 IHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQITKIQNFRVYYRDSRDPLWKGPAKL 240 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20824.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++ E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKTEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGETIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANPIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNSRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05329.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEQEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22043.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGAVEAMNHHLKTQIGRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03420.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFPLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: QLK12759.1 Length: 524 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: QLK12837.1 Length: 524 Range 1: 232 to 501 Score:210 bits(534), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 232 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 291 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 292 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPVTHLHTDNGAN 351 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 352 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 411 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 412 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 471 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 472 LLWKGEGAVILK-VGTDIKVVPRRKAKIIKD 501 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68970.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIASDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81827.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQNQITKLSKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16872.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06733.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQKEHEKYHSNVKELVFKFGIPGLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPTTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21865.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGSIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20952.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45587.1 Length: 287 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQVDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVNIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12165.1 Length: 301 Range 1: 8 to 266 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:110/271(41%), Positives:160/271(59%), Gaps:24/271(8%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C IRGE + GQ+ P +WQMD Sbjct 8 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIRGEAIHGQVDCSPEVWQMD 67 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 68 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 127 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 128 TMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAVFVHN 187 Query 187 FKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKDQKDK 234 FK++G + E I Q++ L+IQ + +YY++ +D Sbjct 188 FKRKGGIXGYTAGERLIDILATHLQTTELQKQILKIQKF-----------QVYYRBSRDP 236 Query 235 KWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 WKGP ++ + G+G+V+++D + I +VPRR Sbjct 237 VWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05830.1 Length: 299 Range 1: 12 to 289 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/281(40%), Positives:170/281(60%), Gaps:6/281(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 12 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP+ET T LL+L VT + TDNG N Sbjct 72 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPEETGQETAYFLLKLAGRWPVTTIHTDNGRN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 132 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ---KLMMQWLYYKDQKDKKWKGP 239 NFK++G +G + E I + IQ A+ Q K+ +YY+D +D WKGP Sbjct 192 FIHNFKRKGGIGGYSAGERIIDIIATDIQT--KALQQQITKIQNFRVYYRDSRDPLWKGP 249 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 ++ + G+G+V+++D I +VPRR + + + GD Sbjct 250 AKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 289 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84980.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAXFJLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60099.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84504.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21107.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVDYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07110.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol polyprotein [Simian immunodeficiency virus] Sequence ID: AAA91906.1 Length: 1047 Range 1: 751 to 1016 Score:217 bits(553), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:172/267(64%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ RIEEA+ H+++HS+ + L F LP+IVA+EI CP C+++GE + GQ+ PG+ Sbjct 751 FIGRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQVKGEPIHGQVDASPGV 810 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IP+ET T K LL++I +T L TDNGPN Sbjct 811 WQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPN 870 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + ++H G+P NPQSQ +E+ N LK I K + + A+ +A Sbjct 871 FTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 930 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFK++G +G + E I + +++ + QK++ +YY++ +D WKGP R Sbjct 931 HIHNFKRKGGIGGLTAAERLINMITTQLEINTLQTKIQKILNFRVYYREGRDPVWKGPAR 990 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+LK+ E+ + +VPRR + Sbjct 991 LIWKGEGAVVLKEGEE-LKVVPRRKAK 1016 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89488.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKKKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46361.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46559.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46857.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85517.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96595.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29012.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09944.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLNEIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87889.1 Length: 288 Range 1: 1 to 278 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77228.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05671.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05682.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVNPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGAVEAMNHHLKTQIDRIREQANSIETIILMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12161.1 Length: 299 Range 1: 2 to 264 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:164/267(61%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 2 FLEGIDQAQEDHEKYHSNWKALAGDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDYSPEV 61 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 62 WQMDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 121 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 122 FTSTNVKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 181 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 N+K+RG +G E I + IQ + QK +++ +YY+D +D WKG Sbjct 182 FVHNYKKRGGIGGYTAGERIIDILTTHIQ---TTELQKQILKIQNFRVYYRDSRDPIWKG 238 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P ++ + G+G+V+++D+ I +VPRR Sbjct 239 PAQLLWKGEGAVVIQDKGD-IKVVPRR 264 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22119.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIKDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76274.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83503.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77566.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 XLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12769.1 Length: 271 Range 1: 1 to 263 Score:202 bits(515), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I CP C+ GE + GQ+ GI Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCPQCQQXGEAIHGQVNAELGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ + T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQGSGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ + E ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVXEAMHHHLKXQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLXAKNXKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: QLK12737.1 Length: 528 Range 1: 236 to 505 Score:210 bits(534), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 236 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 295 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 296 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPVTHLHTDNGAN 355 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 356 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 415 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 416 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 475 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 476 LLWKGEGAVILK-VGTDIKVVPRRKAKIIKD 505 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28287.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHGKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83530.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRREVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77872.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17758.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMXSDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16537.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTQELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85538.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06011.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQTDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84257.1 Length: 282 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: QLK12724.1 Length: 528 Range 1: 236 to 505 Score:210 bits(534), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H+K+HS+ + L +F LPRIVA +I C C +GE + GQ+ G Sbjct 236 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 295 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 296 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPVTHLHTDNGAN 355 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 356 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 415 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 416 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 475 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK I +VPRR + + + Sbjct 476 LLWKGEGAVILK-VGTDIKVVPRRKAKIIKD 505 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98932.1 Length: 288 Range 1: 1 to 266 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHXEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D+ I +VPRR + Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24973.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNXXAMASDFNLPPVVAKEIVXSCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ L +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDMIATDIQTKELQNQITNLQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AXX75632.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59880.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIXASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71144.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:110/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + +YY+D +D WKG Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKALQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82054.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AWW87335.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIASDJQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92728.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKTIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKNITKIKNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08950.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFXVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20831.1 Length: 380 Range 1: 97 to 359 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +AL Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAL 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22056.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VP R + + + Sbjct 337 LLWKGVGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03322.1 Length: 380 Range 1: 97 to 366 Score:206 bits(524), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F++PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFDIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+ G +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17576.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84657.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09966.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09968.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPR+ ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRKKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16837.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47150.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81325.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIERAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08958.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNXLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76692.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA++I C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMASDFNLPPVVAKQIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTRELQKHITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04087.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRISEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61553.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAIASDFNLPPIXAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28898.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84340.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16486.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDMISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82733.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKXLQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84919.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKQVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMVATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17007.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18040.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKVIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98927.1 Length: 288 Range 1: 1 to 263 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPTETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + +KH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNVKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQXTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44553.2 Length: 286 Range 1: 1 to 278 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V++K E I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVIIK-ENSDIKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12154.1 Length: 300 Range 1: 3 to 268 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/278(39%), Positives:165/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 3 FLEGIDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 62 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET + LL+L V + TDNGPN Sbjct 63 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQESAYFLLKLAARWPVKVIHTDNGPN 122 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+ + GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 123 FTSAAMKAACWWTNIQQEFGIPYNPQSQGVVEAMNKELKSIIQQLRDQAEHLKTAVQMAV 182 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 183 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 231 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D + I +VPRR + Sbjct 232 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRRKAK 268 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42122.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ RGE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNSCAQCQQRGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE + +LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMHRSLKNQISRIRXQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLXAKNSKXKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V +K I +VPRR Sbjct 241 LLWKGXGAVXVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77852.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61296.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL L V + TDNG N Sbjct 61 WQVDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLXLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDMQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+ +D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVJQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68957.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + I QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKILQKQITKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60381.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61318.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25473.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03378.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKTIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G + G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGTEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22070.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:111/265(42%), Positives:167/265(63%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHPEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G + P E + + IQ S P KL +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDVTPAERLVNMITTEQEIQFQQSKNP-KLKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42093.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H++ + L +F LP +VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHTNVKELCHKFGLPMLVAKQIVNTCAQCQQKGEAIHGQVNAELGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETVVLMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28437.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM+CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMNCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21200.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84734.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDMQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49654.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIIASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FVSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77396.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61504.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18277.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMXSDFNIPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHK12768.1 Length: 271 Range 1: 1 to 263 Score:202 bits(514), Expect:4e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ RGE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPQLVARQIVNSCAQCQQRGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFXEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE + LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEXMHRXLKBQISRIRXQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLXAKNSKXKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20938.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKEPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20943.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTSAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21062.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAAHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNLHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17856.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWRGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49755.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09180.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP ++A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHERYHSNWRAMASDFNLPPVIAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNS-AIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04294.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE + LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMYHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05335.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05052.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWLITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVLYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52255.1 Length: 288 Range 1: 1 to 270 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDMQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82095.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68199.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK IQ+ + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05611.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQAFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIVDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17862.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24703.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQQKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01928.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08913.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWKAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91559.1 Length: 278 Range 1: 1 to 278 Score:202 bits(515), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81261.1 Length: 282 Range 1: 1 to 279 Score:202 bits(515), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPXVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42098.1 Length: 293 Range 1: 1 to 270 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F LP +VA++I C C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKYHSNVKELCHKFGLPTLVAKQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQSKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V++K I +VPRR + + + Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28322.1 Length: 299 Range 1: 1 to 263 Score:203 bits(517), Expect:4e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFMEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKIVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20886.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:4e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPTERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81662.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIERAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16570.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQSQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84761.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83501.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83504.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83517.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83519.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83520.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46637.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:4e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVQVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04039.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYRSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+++LK + I +VPRR + + + Sbjct 337 LLWKGEGAIILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20841.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +I+ A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIKPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNLKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37154.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81670.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDXXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACXWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42308.1 Length: 288 Range 1: 1 to 278 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + L ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKALASDFNLPPVVAKEIIASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGFIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D D WKGP + Sbjct 181 FIHNFKRKGGIGDYCAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSXDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16569.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82435.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + D + I QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIV---DIIATDLQTKILQKQITKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+ +++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAXVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04359.1 Length: 380 Range 1: 99 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/269(39%), Positives:164/269(60%), Gaps:2/269(0%) Query 5 DRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQ 64 ++ E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G WQ Sbjct 99 EKTEPAQEKHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQ 158 Query 65 MDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFK 124 MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 159 MDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFT 218 Query 125 NQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHC 184 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+HC Sbjct 219 SQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAVHC 278 Query 185 LNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRVE 243 +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 279 MNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELL 338 Query 244 YWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 339 WKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03977.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/273(39%), Positives:166/273(60%), Gaps:6/273(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPXLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK E K +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTEXK---VVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25262.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18201.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01926.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATGIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82009.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20998.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA+++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQVVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIRDMTPAERLVNMITTEQEIQFQQSKNSKFKDFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21122.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKEPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09937.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09964.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09965.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPR+ ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRKKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09929.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I + PRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVAPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70253.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70254.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08839.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08840.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08841.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82510.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol polyprotein - simian immunodeficiency virus SIVagm (isolate SAB-1) [Simian immunodeficiency virus - agm] Sequence ID: pir|S46347| Length: 1039 >pol protein, partial [Simian immunodeficiency virus - agm.sab-1] Sequence ID: AAA21505.1 Length: 1039 Range 1: 748 to 1013 Score:217 bits(552), Expect:5e-60, Method:Compositional matrix adjust., Identities:111/271(41%), Positives:173/271(63%), Gaps:10/271(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++DRIEEA+ H+K+H++ + ++ EF LP IVA+EI CP C+I+GE V GQ+ PG+ Sbjct 748 FLDRIEEAQEEHDKYHANWRSMQQEFGLPAIVAKEIVAACPKCQIKGESVHGQVDASPGV 807 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T+L TDNG N Sbjct 808 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGKATAHFLLKLASRWPITQLHTDNGTN 867 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + I+H G+P NPQSQ +VE+ N LK I + + L+ A+ +A+ Sbjct 868 FTSQQVAAICWWGKIEHTFGVPYNPQSQGVVESMNKQLKEIIGQIRDDAERLETAVIMAV 927 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 H NFK++G +G + E ++ + E+ +Q S K+ +YY++ +D WK Sbjct 928 HIHNFKRKGGIGGYSAAERLINIIHTELETKTLQQKIS----KIQNFRVYYREGRDPVWK 983 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 GP ++ + G+G+V+++ E+ + +PRR + Sbjct 984 GPAKLIWKGEGAVVIQ-EQGELKTIPRRKAK 1013 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05827.1 Length: 299 Range 1: 12 to 290 Score:203 bits(517), Expect:5e-60, Method:Compositional matrix adjust., Identities:111/280(40%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 72 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 132 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 192 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 252 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 290 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04321.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVCYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16200.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05966.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAAHVASGFIEAEVTPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAVNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18352.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04315.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05584.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +Y ++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYCREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84861.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKLIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17898.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47182.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQKFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16716.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28857.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84507.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16994.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16910.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28130.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77546.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRTMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESXNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81274.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81294.1 Length: 282 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42076.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEKFHS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FIEXIEPAQEEHEKFHSNVKELSHKFGIPKLVARQIVNTCXQCQQKGEAIHGQVNADLGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + + +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQTKNSELKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I + PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVXPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16745.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18147.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25159.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKIVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81941.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81813.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46869.1 Length: 288 Range 1: 1 to 279 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISSDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22250.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHERYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V+LK + I +VPRR Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21118.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ RIE A+ HEK+HS+ + L +F +PR+VA++I C C +G+ + GQ+ G Sbjct 97 FLKRIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGKAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21067.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCT GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTQLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16747.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84918.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76537.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + +E+NLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASEYNLPXIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQKFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: WDY34865.1 Length: 288 Range 1: 1 to 270 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TKELQKRIIQIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+++D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIXD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ALS54617.1 Length: 1023 Range 1: 733 to 998 Score:217 bits(552), Expect:5e-60, Method:Compositional matrix adjust., Identities:111/267(42%), Positives:174/267(65%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IEEA+ HE++H++ + + F +P+IVA+EI +CP C+IRGE V GQ+ PG+ Sbjct 733 FLEKIEEAQEEHERYHNNWREMADTFGIPQIVAKEIVAQCPKCQIRGEPVHGQVDASPGV 792 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A+IIP+ET T K LL+L+ +T+L TDNGPN Sbjct 793 WQMDCTHLEGKIIITAVHVASGFIEAEIIPRETGKETAKFLLKLLSRWPITKLHTDNGPN 852 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+H G+P NPQSQ VE+ N LK I K + L+ A+ +A Sbjct 853 FVSQEVQAMCWWGKIEHTTGVPYNPQSQGSVESMNKQLKEIIGKIREDCQYLETAVLMAC 912 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFK++G +G M + + + +++ Y QKL+ +YY++ +D W+GP Sbjct 913 HIHNFKRKGGVGDMTSADRLLNILTTQLETKYLQQKIQKLLNFKVYYREGRDPVWRGPAV 972 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V++KD + + +VPRR + Sbjct 973 LIWKGEGAVVIKD-QGDLKVVPRRKAK 998 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05967.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTLAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76867.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCXKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXVXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FXSAAMKAACWWADIKQEFGIPYNPQSQGVVESMNKELKKIIEQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91452.1 Length: 278 Range 1: 1 to 278 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16285.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10507.1 Length: 288 Range 1: 1 to 270 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQDTAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85380.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAELIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D K I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67507.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + + QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TKVLQKQITTLQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17968.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIISTDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76530.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQIRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46779.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVQVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47152.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82900.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37157.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16097.1 Length: 282 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQXDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84305.1 Length: 282 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04032.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +Y ++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYSREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85409.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELXKQIXKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76617.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMAEEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FXSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 XLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85031.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKRIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69129.1 Length: 288 Range 1: 1 to 266 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42121.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNMKELAHKFGLPQLVAKQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQATGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQXFGVPYNPQSQGVVEGMHHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A QKL +Y+++ +++ W GP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNQKLQKFRVYFREGRNQLWTGPGB 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21098.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTRDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81458.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08907.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDXHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77136.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + L +FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWKALANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDLQTKXLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91570.1 Length: 278 Range 1: 1 to 278 Score:202 bits(514), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22272.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNSKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04331.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEATHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGTIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCTNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05993.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F + R+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGILRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21116.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLKKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELRT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59800.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61034.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84773.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60179.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP VA+EI C C+I+GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPSXVAKEIVASCDKCQIKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FVSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGMYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16551.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17812.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDMQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGTVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09941.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGKRIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18264.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17788.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29133.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16397.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69003.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISSDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACI62689.1 Length: 267 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACI62697.1 Length: 267 Range 1: 1 to 266 Score:202 bits(513), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51504.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVDAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04017.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIRGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ +P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFEVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04055.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:110/272(40%), Positives:167/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEXEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQSQQSK-NSKFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84897.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81327.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22263.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:5e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F + R+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGILRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16787.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE V GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAVHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17657.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASXFNLPPIVAKEIXASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18246.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18369.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85498.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77637.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADK35713.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:5e-60, Method:Compositional matrix adjust., Identities:109/284(38%), Positives:173/284(60%), Gaps:10/284(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +G + E I ++ +Q + I QK +YY+D +D WK Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQITNI-QKFR---VYYRDSRDPLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 GP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 237 GPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42959.1 Length: 293 Range 1: 1 to 263 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEXGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQTKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28404.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:5e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDRCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71195.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89444.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82570.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45862.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVANCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET + T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGNETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21156.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLRTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IEVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28221.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83527.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQIKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17359.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25532.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76158.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25188.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61204.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + IK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWANIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >Pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAF07317.1 Length: 1023 Range 1: 739 to 1017 Score:216 bits(551), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:175/280(62%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ + KFH++ + L +F++P +VA++I C C+ +GE + GQ+ PGI Sbjct 739 FLGKIEPAQEEYSKFHNNAKDLEEKFHIPPMVAKQIVNSCNKCQTKGEAITGQVDTSPGI 798 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G++II AVHV SGF+ A++IP ET T LL+L V ++ TDNGPN Sbjct 799 WQIDCTHMEGQVIINAVHVASGFMVAEVIPDETGKTTAHFLLKLCSRWPVQQVHTDNGPN 858 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ ++ ++GI+H GIP NPQSQ +VE N LK I++ + L A+ +A Sbjct 859 FVSKEVQAVIWWLGIEHTTGIPYNPQSQGVVEAKNKALKQIIERVREDAQQLKTAVLMAT 918 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFKQRG LG ++P E +I + ++ Y + K++ +YY+ +D +WKGP + Sbjct 919 HIHNFKQRGGLGGLSPAERFINMINADLETQYLQKLNSKILKFKVYYRQGRDPQWKGPAQ 978 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++K E IF VPRR + V + P+ E Sbjct 979 LLWKGEGAVVVK-EGDTIFSVPRRKAKLVKDYGEGPKDSE 1017 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21852.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGEIIIVAVHVASGFIEAEVIPQETGRRTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSRNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05091.1 Length: 380 Range 1: 97 to 366 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCT+ GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTYLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03329.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKVEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLRLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+L+ + I +VPRR Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82711.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89475.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:170/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERII---DIIATDIHTKEXQKQITKIQNFRVYYRDNRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P R+ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PARLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29245.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAAKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17189.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44601.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84570.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKXKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04110.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV S F+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASEFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04107.1 Length: 380 Range 1: 97 to 348 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:102/252(40%), Positives:157/252(62%), Gaps:1/252(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK 253 + + G+G+V+LK Sbjct 337 LLWKGEGAVILK 348 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22165.1 Length: 380 Range 1: 97 to 359 Score:206 bits(523), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28380.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGAE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18136.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25550.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMXSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91274.1 Length: 278 Range 1: 1 to 278 Score:202 bits(514), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATXIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25273.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51967.1 Length: 288 Range 1: 1 to 266 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE V GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAVHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84814.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSTGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16451.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77401.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQXXELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87823.1 Length: 288 Range 1: 1 to 266 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPAVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIKQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77888.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:173/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 230 NRDPJWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60477.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKJQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84784.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04338.1 Length: 380 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06024.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21799.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVXVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96607.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87886.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDLQTKQLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85337.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERXIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + G++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGBD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35925.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGITEAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16937.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29333.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82060.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22094.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKRPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20924.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16540.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84914.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKKVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMVATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85235.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17727.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16559.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELVHKFAIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRXXAXFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPCNPQSQGVVEAMNHHLKNQINRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGXD-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACO71321.1 Length: 309 Range 1: 22 to 291 Score:203 bits(517), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 22 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 81 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 82 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKXIHTDNGSN 141 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 142 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 201 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q++ ++IQ++ +YY+D Sbjct 202 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 250 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 251 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 291 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06709.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGAPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMITTEPEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22191.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANPIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28401.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IEVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47076.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQITKIHNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77269.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAADFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQITKIQKFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17967.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42215.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28276.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28277.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28344.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28346.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28348.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77653.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQSKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+LKD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77386.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIIQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKLITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIKDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25114.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: WDY34973.1 Length: 288 Range 1: 1 to 270 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16142.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17725.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28250.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASXFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDILATDIQTKELQKQITKIQNFRVYYRDNRDPFWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84522.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91368.1 Length: 278 Range 1: 1 to 278 Score:202 bits(514), Expect:6e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03323.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQAALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82004.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDILATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08949.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42484.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42486.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKITNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69014.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16610.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18329.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87783.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81954.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29079.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25511.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16422.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQIKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16487.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AUW31531.1 Length: 288 Range 1: 1 to 270 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRRGGIGGYTAGERIIDIIATDIQTTELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87701.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91395.1 Length: 278 Range 1: 1 to 278 Score:202 bits(514), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42064.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKYHSNIKELSHKFGIPXLVAXQIVNTCTQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22039.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV GF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVARGFIEAEVIPQETGRQTALFLLKLTSRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHFLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61012.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVNCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81318.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82169.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP I A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWKAMASDFNLPPIXAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76401.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ KL +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDMIATDIQTRELQKQITKLQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06732.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAEKLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGLGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17686.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNIPPVVAKEIVASCDKCQIKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNALKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17659.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46569.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FISATVKAACWWAGIQQEFGIPYNPQSQGVVEAMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83529.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKASCWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82789.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE +HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEXYHSNWRAMANDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81719.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVVPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNKITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05385.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ +P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFRVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07163.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVSYNPQSQGVVEAMNHHLKTQIDRIREQANSMETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28365.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:6e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98940.1 Length: 288 Range 1: 1 to 263 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FISAAMKAACWWTNIXHEFGIPYNPQSQGVVEAMNKELKSIIZQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17609.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18166.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LFWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17408.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKLSKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77659.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L +T + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPITTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81362.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81518.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81779.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81790.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82184.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIERAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77458.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84308.1 Length: 282 Range 1: 1 to 279 Score:202 bits(514), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84264.1 Length: 282 Range 1: 1 to 279 Score:202 bits(514), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXXATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20900.1 Length: 380 Range 1: 99 to 366 Score:205 bits(522), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/269(39%), Positives:164/269(60%), Gaps:2/269(0%) Query 5 DRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQ 64 ++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G WQ Sbjct 99 EKIEPAQEEHEKYRSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQ 158 Query 65 MDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFK 124 MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG NF Sbjct 159 MDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFT 218 Query 125 NQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHC 184 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+HC Sbjct 219 SQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVHC 278 Query 185 LNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMRVE 243 +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP + Sbjct 279 MNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELL 338 Query 244 YWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + G+G+V+LK + I +VPRR + + + Sbjct 339 WKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18155.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36622.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52054.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61633.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXEFNLPPIVAKEIVAXCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFXLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAXVXAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIVDMIATDIQTNQLQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35912.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:6e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84278.1 Length: 282 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07064.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFRFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +Y ++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYCREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05350.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28372.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:7e-60, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A+++P+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVVPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEATNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05821.1 Length: 299 Range 1: 12 to 290 Score:203 bits(516), Expect:7e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 72 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 132 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 192 FIHNFKRRGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 252 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 290 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18056.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCEKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16986.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16516.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17753.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHEEGKVILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRXAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37187.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04046.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++++ A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKMGPAQEEHEKYHSNVKELVLKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ASM56708.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82812.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84414.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKKVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMVATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDXSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70865.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNVMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70359.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60863.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIIDIIATDIQTRLLQKQISKIXNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09946.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N L I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELNKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03997.1 Length: 379 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ +EK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEYEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQAXSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NF +RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFNRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05001.1 Length: 379 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSPGVVEAMDHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05637.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI++VAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIVVVAVHVASGSIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05565.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQGEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGA 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPTTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIGEQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAEGLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I +VPRR + + + Sbjct 337 LLWKGEGAVILEVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84847.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16895.1 Length: 288 Range 1: 1 to 278 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25100.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAHFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46703.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62775.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ L +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISNLQKFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16068.1 Length: 282 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQXQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28369.1 Length: 299 Range 1: 1 to 263 Score:203 bits(516), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22151.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24557.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13694.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18073.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSSWRAMASDFNLPPIVAKEIVASCEKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68863.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16808.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQVSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APX42743.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAXFLLKLAGRWPVKXVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAI 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ KL +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76140.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGPETAYFILKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81887.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQGEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81693.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17227.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85363.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13697.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16525.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07055.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMVTTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+L + I +VPRR Sbjct 337 LLWKGEGAVILMVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05393.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNRHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+ G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28375.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQARNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28350.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76319.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G +P E RI D S+ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSPGE--------RIVDIISSDLQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82167.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEQLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17490.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG+ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYJEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16120.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASELQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81906.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82910.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+IIP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V ++D + I +VPRR + + E GD+ Sbjct 241 LLWKGEGAVXIQDNSE-IKVVPRRKAKIIREYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77700.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDXSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77116.1 Length: 288 Range 1: 1 to 279 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79082.1 Length: 283 Range 1: 10 to 275 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 10 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 69 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 70 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 129 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 130 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 189 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 190 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 249 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 250 LLWKGEGAVVIQDNSE-IKVVPRRKAK 275 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42123.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELCHKFGLPKLVARQIVNTCTQCXQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFVEAEVIPQATGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE ++ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQISRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGEIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03354.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++I QET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAAHVASGFIEAEVISQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27973.2 Length: 1470 Range 1: 1174 to 1439 Score:217 bits(553), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:172/267(64%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ RIEEA+ H+++HS+ + L F LP+IVA+EI CP C+++GE + GQ+ PG+ Sbjct 1174 FIGRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQVKGEPIHGQVDASPGV 1233 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IP+ET T K LL++I +T L TDNGPN Sbjct 1234 WQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPN 1293 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + + ++H G+P NPQSQ +E+ N LK I K + + A+ +A Sbjct 1294 FTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 1353 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFK++G +G + E I + +++ + QK++ +YY++ +D WKGP R Sbjct 1354 HIHNFKRKGGIGGLTAAERLINMITTQLEINTLQTKIQKILNFRVYYREGRDPVWKGPAR 1413 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+LK+ E+ + +VPRR + Sbjct 1414 LIWKGEGAVVLKEGEE-LKVVPRRKAK 1439 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28377.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28305.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVDAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHADNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IEVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87896.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKLIGQVRDQXEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16699.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77363.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEW47805.1 Length: 288 Range 1: 1 to 278 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQRQISKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82502.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNNELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21148.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28293.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEVHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S+ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIKTVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28484.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIGPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLANRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28351.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28360.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLRAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01977.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTRELQKQITKIQNSRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VP R + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPSRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84513.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13718.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98950.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAO61896.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/275(39%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16337.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05583.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ L I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLNTQIDRIREQANPIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22235.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK G +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGGGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03342.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPPERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20849.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLPKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTGQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04028.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVLYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84733.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71178.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84846.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68920.1 Length: 287 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHXKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKLRNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28368.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98931.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:110/275(40%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKILHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FTSATMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 N+K++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILATQLQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25033.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87794.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82013.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKLIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82864.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37182.1 Length: 288 Range 1: 1 to 278 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++F LP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFGLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKALQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37148.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYTPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42089.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAXHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A +Y+ + +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTDQEIQFLQAKNSNFKNFRVYFXEGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20839.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05258.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYLSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QTF48839.1 Length: 264 Range 1: 1 to 263 Score:201 bits(512), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/265(41%), Positives:164/265(61%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ--WLYYKDQKDKKWKGPM 240 NFK++G +G + E I + IQ Q L +Q +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTK-EIQNQILKIQKFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 ++ + G+G+V+++D I +VPRR Sbjct 240 KLLWKGEGAVVIQDNSX-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18267.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDXCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85005.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVATIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDLQTKXLQKQXSKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89507.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHVEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTALRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24547.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81937.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81994.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82451.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77850.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYCAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92752.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+L A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61088.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFN P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNJPPVVAKEIVAXCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17664.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09140.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASEIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98959.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C +GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIANCPKCHTKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHAEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83211.1 Length: 297 Range 1: 1 to 263 Score:202 bits(515), Expect:7e-60, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE +H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEXYHGNVKELVHKFGIPQLVAKQIVNSCDXCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQXTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRIRDQAVSIETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + +F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84613.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77097.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:7e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNIPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01662.1 Length: 304 Range 1: 17 to 295 Score:203 bits(516), Expect:7e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 256 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 257 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >integrase protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16564.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:8e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:160/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A Sbjct 121 FXSQDVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNRXLKNQISRIREQANSVETLVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22069.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + KL +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06052.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSPGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+LK + I +VPRR Sbjct 337 PLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37170.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44625.2 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + E GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIREYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46859.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELHKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84319.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16309.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQXDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17702.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84405.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKTIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05021.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKISIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDDGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11294.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84646.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44573.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77693.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:174/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D ++ WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERLVDILATDLQTKELQKQI-SKIQNFRVYYRDSREPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60619.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AWF73455.1 Length: 287 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QCO90369.1 Length: 287 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPAVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 KD WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NKDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP56194.1 Length: 310 Range 1: 23 to 301 Score:203 bits(516), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 23 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 82 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SGF+ A++IP ET T +L+L V ++ TDNG N Sbjct 83 WQLDCTHLEGKIILVAVHVASGFIEAEVIPAETGQETAYFILRLAGRWPVKKIHTDNGSN 142 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 143 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 202 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 203 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDNRDPLWKGPAR 262 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 263 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 301 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04342.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 157 RQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03318.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV S F+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASRFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77716.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89459.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59981.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FVSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGMYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16343.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84691.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46657.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46969.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKSIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42118.1 Length: 293 Range 1: 1 to 263 Score:202 bits(515), Expect:8e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE + GQ+ G Sbjct 1 FLEXIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNTCAQCQQKGEAIHGQVNAELGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRXTALFLLKLASRWPXTHLHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWXGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP + Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFQVYFREGRDQLWKGPGQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I ++PRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00327.1 Length: 288 Range 1: 1 to 270 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIIAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76137.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77351.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMANEFNLPPVVAKEIVASCBKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89443.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDNRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 R+ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 RLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77070.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68973.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70318.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +GR + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGRYSAGE--------RIXDIIASDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89493.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20975.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16856.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81822.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16972.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89452.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85019.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89463.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85459.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76292.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIKH+ GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKHEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10557.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIATEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85280.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + EFN P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMAXEFNJPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98933.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ + I +VPRR Sbjct 241 LLWKGEGAVVIQDKGE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77819.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + +EFN+P +VA+EI C C+I+GE GQ+ PGI Sbjct 1 FLDGIDKAQADHEKYHNNWRAMVSEFNIPPVVAKEIVASCDKCQIKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRRGGIGGYSAGERIIDXIATDIQTKELQKHITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07032.1 Length: 380 Range 1: 97 to 359 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLPKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWEGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22227.1 Length: 380 Range 1: 97 to 366 Score:205 bits(522), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKGLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCT GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTRLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G G+V+LK + I +VPRR + + + Sbjct 337 LLWKGGGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29387.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77553.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKJQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82025.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/283(37%), Positives:174/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAIQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G +P E + + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQ---TKELQKQIIKVQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25016.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37265.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVSAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDMQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81523.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C ++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCHLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADB96057.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81896.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85394.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82223.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQXTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45548.1 Length: 287 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGYIEAEVLPAETGQETAYFLLKLAGRWPVKRVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09236.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIXATBJQTXELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84461.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16589.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28983.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMVSEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ L +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITNLQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18111.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPXETGQXTAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXQIXKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX15408.1 Length: 337 Range 1: 50 to 328 Score:204 bits(518), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 50 FLDGIDEAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 109 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 110 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 169 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 170 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTALQMAV 229 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 230 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 289 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 290 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 328 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91518.1 Length: 278 Range 1: 1 to 278 Score:202 bits(513), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05083.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12145.1 Length: 299 Range 1: 6 to 264 Score:202 bits(515), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/266(41%), Positives:159/266(59%), Gaps:14/266(5%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C +GE + GQ+ P +WQ+D Sbjct 6 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHTKGEAIHGQVDCSPEVWQID 65 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 66 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKXIHTDNGPNFTSA 125 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ VE N LK IQ+ + L A+ +A+ N Sbjct 126 TMKAACWWTNIKHEFGIPYNPQSQGAVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 185 Query 187 FKQRGRLGRMAPYE-------LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGP 239 FK++G +G E +IQ L+ Q + K+ +YY+D +D WKGP Sbjct 186 FKRKGGIGGYTAGERIIDILASHIQTTELQKQIF------KIQKFQVYYRDSRDPIWKGP 239 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRR 265 ++ + G+G+V+++D+ I +VPRR Sbjct 240 AQLLWKGEGAVVIQDKGD-IKVVPRR 264 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09249.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGAETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQTFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89466.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89471.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77101.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13714.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96685.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16644.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89461.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46443.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89460.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17247.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18351.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25449.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20961.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIVVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+R +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRRGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05007.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAGWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28403.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:8e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCNKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46717.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76238.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIKH+ GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKHEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQXTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42566.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVATVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98954.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 N+K++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29024.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29394.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92676.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVEAINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82624.1 Length: 275 Range 1: 1 to 263 Score:202 bits(513), Expect:8e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQVSKIQHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ALS54625.1 Length: 1028 Range 1: 733 to 1011 Score:216 bits(550), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:179/280(63%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++H++ + + F +P++VA+EI +CP C+IRGE + GQ+ PG+ Sbjct 733 FLEKIEHAQEEHERYHNNWKEMADTFGIPQVVAKEIVAQCPKCQIRGEPIHGQIDASPGV 792 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IP+ET T K LL++I +T+L TDNGPN Sbjct 793 WQMDCTHLEGKIIITAVHVASGFIEAEVIPRETGKETAKFLLKIISRWPITKLHTDNGPN 852 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + ++H G+P NPQSQ VE+ N LK I K + L+ A+ +A Sbjct 853 FVSQEVQAMCWWGKVEHTTGVPYNPQSQGSVESMNRQLKEIIGKIRDDCQFLETAVLMAC 912 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFK++G +G M E + + +++ ++ QK +Y+++ +D WKGP Sbjct 913 HIHNFKRKGGVGDMTSAERLLNMLTTQLEINHLQKQQQKFSNFKVYFREGRDPVWKGPAT 972 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD+E+ + +VPRR + + + GDE Sbjct 973 LIWKGEGAVVIKDQEE-LKVVPRRKAKIIKDYGDKRMGDE 1011 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX15411.1 Length: 323 Range 1: 36 to 314 Score:203 bits(517), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 36 FLDGIDEAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 95 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 96 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 155 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 156 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTALQMAV 215 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 216 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 275 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 276 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 314 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77802.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVSSGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQXVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28246.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17264.1 Length: 288 Range 1: 2 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGIW Sbjct 2 LDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGIW 61 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 62 QLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGSNF 121 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 122 TSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRVQAEHLKTAVQMAVF 181 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E + + IQ K+ +YY+D +D WKGP ++ Sbjct 182 IHNFKRKGGVGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKL 241 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 242 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59891.1 Length: 288 Range 1: 1 to 278 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/279(38%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDXIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17681.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFU91884.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25080.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87784.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05320.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ EK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEREKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T +LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEIGRQTALSLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05986.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:8e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPGLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ + E N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVAEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46301.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGXQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60427.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTQELQKQISKIQNFRVYYRDNREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16606.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47160.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEAHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTTELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85426.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77037.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G +P E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 R+ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 RLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ASM56704.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61508.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:8e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNIPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWRGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76910.1 Length: 289 Range 1: 1 to 280 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:168/280(60%), Gaps:1/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++H++ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQADHERYHNNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVTXIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYFRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSGDIKVVPRRKAKIIRDYGKQMAGDD 280 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82835.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77701.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16951.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIRQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEW47800.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24663.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRRAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89462.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04988.1 Length: 379 Range 1: 97 to 358 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:105/263(40%), Positives:161/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRERANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84710.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18032.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDMQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22057.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVAXCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDXIASDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16636.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AMP41509.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVANCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77847.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSGALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDSGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85493.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDILATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25509.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60280.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/278(38%), Positives:169/278(60%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDLQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D + I +VPRR + Sbjct 230 SRDPLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81928.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85482.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEADVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMXATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87721.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29172.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFXLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82202.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77365.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D +++A+ +HEK+HS+ + L ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGLDKAQEDHEKYHSNWRTLASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + ++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TTELQKQITKFHNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81349.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+ +D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVXQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76511.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16660.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77091.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDXSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16169.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERXVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62761.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + ++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TTELQKQITKFQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17928.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAFFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77871.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16125.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16964.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61432.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAKEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03402.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18282.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82776.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPAVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16862.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28342.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:9e-60, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK + + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQVDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46425.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQVSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IXVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16722.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ADB82809.1 Length: 210 Range 1: 19 to 210 Score:199 bits(507), Expect:9e-60, Method:Compositional matrix adjust., Identities:94/192(49%), Positives:137/192(71%), Gaps:0/192(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 W++RIEEAEL+H+K+HS+ QYLR +++LP IVA+EI +CP C+ RG+ V GQL G+ Sbjct 19 WMERIEEAELDHQKYHSNVQYLREKYDLPPIVAKEIWERCPECQNRGQPVHGQLDYSYGL 78 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+I+VAVHV + F WA I+ +ET + T +ALL+L V ++ TDNGPN Sbjct 79 WQMDCTHEEGKVILVAVHVCTLFCWATILKRETGEETGRALLKLASQWEVKQVHTDNGPN 138 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q + + ++GI+H G P NPQSQ +VE N +K I+K + +L++ +A+A+ Sbjct 139 FTSQNFKAAVWWLGIEHTTGAPYNPQSQGIVEQRNKMIKETIRKMADQAETLESKVAMAV 198 Query 183 HCLNFKQRGRLG 194 + LNFK+RG +G Sbjct 199 YALNFKRRGGIG 210 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71936.1 Length: 286 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWKAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20881.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16940.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17190.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17607.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16160.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96727.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87702.1 Length: 288 Range 1: 1 to 278 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05571.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59882.1 Length: 263 Range 1: 1 to 263 Score:201 bits(512), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/265(40%), Positives:167/265(63%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 ++ + G+G+V+++D I +VPRR Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84362.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98951.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEATHGQVDYSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IP E+ T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPAESGQETAYFLLKLAARWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSAIMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G LG E I + +IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGLGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQ 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89456.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89457.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16459.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84574.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84810.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46897.1 Length: 288 Range 1: 1 to 278 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89494.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85516.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHVEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70320.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29163.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHXFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01617.1 Length: 304 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01629.1 Length: 304 Range 1: 17 to 295 Score:202 bits(515), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 255 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 256 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05273.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGSIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22080.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:163/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 + ++IE A+ HEK+HS+ + L +F +PR+VA+ I C C +GE + GQ+ G Sbjct 97 FXEKIEPAQEEHEKYHSNXKELVFKFGIPRLVAKXIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLGGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77728.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH+ GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHYEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81780.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35897.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVGTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84800.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44547.2 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46433.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46515.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16602.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NRDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89449.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AGB52021.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMISTDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76108.1 Length: 290 Range 1: 1 to 281 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:109/289(38%), Positives:170/289(58%), Gaps:18/289(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAXFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGXYSAGE--------RIVDIIATDXQTXELQKQIIKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKG-IFLVPRRHIRRVPEPCTLPEGDE 281 WKGP + + G+G+V+++D+E I +VPRR ++ + + GD+ Sbjct 233 PLWKGPAXLLWKGEGAVVIQDKETSDIKVVPRRKVKIIRDYGKQMAGDD 281 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22260.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21871.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++ C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQTVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPRETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05684.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21846.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEREIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKAVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81277.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91483.1 Length: 278 Range 1: 1 to 278 Score:202 bits(513), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRRIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28290.1 Length: 299 Range 1: 1 to 263 Score:202 bits(515), Expect:9e-60, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP + Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25051.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25062.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77483.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84843.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ +K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIKKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68922.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK+RG +GR E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRRGGIGRYCAGE--------RIVDIIATDIQTRELQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18163.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76778.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81544.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77534.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17883.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96778.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKHIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61591.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIIDIIATDXQTXELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18230.1 Length: 288 Range 1: 3 to 279 Score:202 bits(514), Expect:9e-60, Method:Compositional matrix adjust., Identities:108/278(39%), Positives:167/278(60%), Gaps:2/278(0%) Query 5 DRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQ 64 D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGIWQ Sbjct 3 DGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGIWQ 62 Query 65 MDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFK 124 +DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 63 LDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFT 122 Query 125 NQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHC 184 + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 123 SXVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLXTAVQMAVFI 182 Query 185 LNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVE 243 NFK++G +G + E + + IQ K+ +YY+D +D WKGP ++ Sbjct 183 HNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLL 242 Query 244 YWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D + I +VPRR + + + GD+ Sbjct 243 WKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06685.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVVSGFIEAEVIPQETGRRTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDRLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + +VP+R Sbjct 337 LLWKGEGAVILKVGTE-FKVVPKR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21867.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ H K+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHGKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHPEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84283.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDJQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42972.1 Length: 293 Range 1: 1 to 263 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEVGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I E+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVISXESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F ++ +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQRKNSNFKKFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AGP05173.1 Length: 293 Range 1: 1 to 263 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ LP++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNIKELTHKYGLPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 181 HGMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89450.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89498.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22079.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIINQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82768.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMANDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89483.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRGQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52215.1 Length: 288 Range 1: 1 to 270 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +H+K+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHDKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E + Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++ E I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQ-ENSDIKVVPRRKVKIIXD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17793.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82819.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16765.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87816.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATEIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17631.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25528.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APX42747.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28232.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76257.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C +GE GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDXCXXKGEATHGQVDSSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGQRIIDXIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01678.1 Length: 304 Range 1: 17 to 295 Score:202 bits(515), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 256 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 257 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05933.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++ E A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKKEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ GIP NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGIPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12144.1 Length: 300 Range 1: 7 to 268 Score:202 bits(515), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/263(41%), Positives:159/263(60%), Gaps:2/263(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P +WQ+D Sbjct 7 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEAIXGQVDCSPEVWQID 66 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVA HV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 67 CTHLEGKIIIVAAHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 126 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK I++ + L A+ +A+ N Sbjct 127 AMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIEQVREQAEHLKTAVQMAVFVHN 186 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G E I + +IQ K+ +YY+D +D WKGP ++ + Sbjct 187 FKRKGGIGGYTAGERIIDILASQIQTTELQKQIFKIQKFQVYYRDSRDPIWKGPAQLLWX 246 Query 246 GQGSVLLKDEEKGIFLVPRRHIR 268 G+G+V+++D + I +VPRR + Sbjct 247 GEGAVVIQD-KGDIKVVPRRKAK 268 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01913.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01916.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01964.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16182.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16293.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FXSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIKQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60441.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QJY77588.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSXVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELHKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25328.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84642.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89441.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89495.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89496.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46735.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGITEAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12146.1 Length: 297 Range 1: 4 to 265 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/267(41%), Positives:161/267(60%), Gaps:10/267(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F P +VA+EI CP C I+GE + GQ+ P +WQMD Sbjct 4 IDQAQEDHEKYHSNWRALASDFGXPPVVAKEIIANCPKCHIKGEAIHGQVDYSPEVWQMD 63 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 64 CTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 123 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 124 AMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 183 Query 187 FKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +G E L Q ++ +Q I QK +YY+D +D WKGP + Sbjct 184 FKRKGGMGGYTAGERILDILASQIQTTELQKQIFKI-QKFQ---VYYRDSRDPIWKGPAQ 239 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D+ I +VPRR + Sbjct 240 LLWKGEGAVVIQDKGD-IKVVPRRKAK 265 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04411.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52260.1 Length: 288 Range 1: 1 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHERYHSNWRAMADEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGJKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGRYSAGERIIDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82325.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIVAKEIIANCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G II+VAVHV SG++ A++IP ET T LL+L V ++ TDNG N Sbjct 61 WQLDCTHLEGXIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRKIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25372.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:167/288(57%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNJPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDMQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PXWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18120.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKALQNQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67551.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68577.1 Length: 288 Range 1: 1 to 263 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/275(39%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHAEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNFKRKGGIGGYTAGERIIDILASHIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QIQ18548.1 Length: 288 Range 1: 1 to 279 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:173/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03400.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+ K + I +VPRR + + + Sbjct 337 LLWKGEGAVISKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06665.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEATNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLANMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70284.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKRIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82916.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+IIP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68145.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTMKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTRQLQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21160.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQGQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAGRLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGG 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05604.1 Length: 380 Range 1: 97 to 358 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/263(40%), Positives:162/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQ Q +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQGQGVVEAMNHHLKTQIDRIREQADSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UWJ07200.1 Length: 286 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCNKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28301.1 Length: 299 Range 1: 1 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V++K + I +VPRR+ + Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRRNAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85144.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16126.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16498.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17914.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17916.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18214.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16677.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25144.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76508.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE +HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEXYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPXWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77211.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05259.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLANMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P + + G+G+V+LK + I +VPRR + + + Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05297.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVVTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMSHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28395.1 Length: 299 Range 1: 1 to 263 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQPFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76535.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09224.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D D WKGP + Sbjct 181 FVHNFKRKGGIGDYTAGERIVDMIATDIQTKELQKXITKIXNFRVYYRDSXDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKHYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70327.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81695.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+H++ + + ++F++P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHNNWRAMASDFDIPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKJQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16947.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81687.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMAADFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEXLXTAXQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42426.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FN+P VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNIPPXVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTLKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKISNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKXKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05934.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAGLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDWTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITRLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ GIP NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGIPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20819.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE V GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAVHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A +IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAGVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE ++ LK I + S + + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMDHHLKTQIDGIREQANSXETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84293.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91353.1 Length: 278 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84912.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24597.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85532.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAADFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11289.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKXMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16143.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16611.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06683.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71197.1 Length: 277 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77595.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + +Q + QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERMIDMIATELQ---TKALQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77681.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82603.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17886.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46455.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84269.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84284.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84294.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84295.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18367.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYXEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44504.2 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76177.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKXIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGXYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77043.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76475.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDJQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84794.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNALKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIVDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QBK58167.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/274(40%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77661.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ + E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVXESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDXQTXXLQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28229.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70269.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70271.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMVSDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85109.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96695.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22150.1 Length: 380 Range 1: 97 to 359 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IRVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71870.1 Length: 286 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81265.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47132.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17202.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERII---DMIASDLQTKVLQKQITKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16406.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELHKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81317.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16879.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDRCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96533.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLXGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81841.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84571.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87931.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10735.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATNIQTEELQKQIIKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81926.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16663.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDMIATDIQTKELQNQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACF37721.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKALQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D K I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16104.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF29012.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:171/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D + I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSE-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29140.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17294.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96567.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35899.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84368.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81976.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60011.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIAXDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18294.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59735.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17504.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAXQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81784.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16102.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHN54805.1 Length: 347 Range 1: 60 to 338 Score:204 bits(518), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 60 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 119 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 120 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 179 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 180 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 239 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 240 FIHNFKRRGGIGGYSPGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 299 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 300 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 338 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84334.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + G+P NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGVPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25175.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWXVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46371.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46385.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20887.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHRKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84266.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84306.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81256.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81273.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00306.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:171/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVGVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E + Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D + I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSE-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16561.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16912.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00314.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92703.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINEAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16941.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16968.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18320.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82185.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQDFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTQELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42568.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42578.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVVQDNGD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16278.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18091.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25567.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84717.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85510.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18318.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18319.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11298.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37247.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12149.1 Length: 301 Range 1: 8 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/264(42%), Positives:158/264(59%), Gaps:10/264(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P +WQ D Sbjct 8 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEATHGQVDXSPEVWQJD 67 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 68 CTHJEGKXIIVAVHVASGFIEAEVIPXETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 127 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 128 TMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAVFVHN 187 Query 187 FKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +G E I Q ++ +Q I QK +YY+D +D WKGP + Sbjct 188 FKRKGGMGGYTAGERIIDILASQXQTTELQKQIFKI-QKFQ---VYYRDSRDPIWKGPAQ 243 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D+ I +VPRR Sbjct 244 LLWKGEGAVVIQDKGD-IKVVPRR 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05562.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE + LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQXQGVVEAMXHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21167.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWEGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84311.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82533.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNJPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKXEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17500.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNJPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85316.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQXXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46879.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17110.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77069.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:172/282(60%), Gaps:8/282(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + +Q + I QK + + +YY+D ++ WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIATDLQ---TKILQKQITKIQNFRVYYRDSREPHWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 P ++ + G+G+V+++D I +VPRR + + + GD Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46731.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELHKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44555.2 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHDKYHSNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSASVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25068.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84564.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44576.2 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84819.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQDFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACI62720.1 Length: 266 Range 1: 1 to 266 Score:201 bits(511), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21790.1 Length: 380 Range 1: 97 to 366 Score:205 bits(521), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVPVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84296.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAELIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAIQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKVQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76088.1 Length: 277 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHJEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84618.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28845.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46813.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAKHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDXIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25542.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59625.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85255.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWKAMVSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17696.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82187.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17797.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82226.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16958.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18086.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18340.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87834.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16734.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16077.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16084.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16115.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84277.1 Length: 282 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16710.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16718.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17734.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25021.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25028.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59820.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59870.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17790.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77327.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVSDFNIPPVVAKEIIASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDHSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76400.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIXKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNXELKXIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61217.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59830.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28234.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDTSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59763.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89446.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:170/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERII---DIIATDIHTKELQKQITKIQNFRVYYRDNRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P R+ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PARLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70324.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16392.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06646.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGMGDMTPAERLVNMITTEQEVQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX15407.1 Length: 338 Range 1: 51 to 329 Score:203 bits(517), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 51 FLDGIDEAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 110 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 111 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 170 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 171 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTALQMAV 230 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 231 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 290 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 291 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 329 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16495.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85456.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46313.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPXI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAFFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87771.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82012.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16829.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62754.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMANEFNLPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDHSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18270.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16463.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81892.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82415.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82433.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82270.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82362.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQADHEKYHSNWRTMVSEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25404.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18324.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47084.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AXR70244.1 Length: 298 Range 1: 1 to 268 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/269(40%), Positives:165/269(61%), Gaps:7/269(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELCHKFGLPQLVAKQIVNTCSQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFXEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTMETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYY-----KDQKDKKW 236 HC+NFK+RG +G M P E I + + + A K +YY ++ KD+ W Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKFKKFRVYYREGRSREGKDQLW 240 Query 237 KGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 KGP + + G+G+V++K I +VPRR Sbjct 241 KGPGELLWKGEGAVIIKVGTD-IKVVPRR 268 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04358.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK++S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYYSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+ + I + PRR + + + Sbjct 337 LLWKGEGAVILRVGTE-IKVAPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82820.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29319.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIAXDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18327.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK IIVAVHV SG++ A++I ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKTIIVAVHVASGYIEAEVIXXETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81563.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10721.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRRGGIGGCSAGERIIDIIATDIQTTELQKQITKIQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16938.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ HEK+H++ + + ++FNLP ++A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGINKAQEEHEKYHNNWRAMASDFNLPPVIAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77139.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71234.1 Length: 287 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGITDAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20919.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L + +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKLGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFTEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMIATEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05950.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMXCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQ-ESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + ++ + + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQVIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00349.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I S IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIISTDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28171.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46561.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAHFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28169.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATNIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16471.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQIAKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24787.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTLKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35910.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMVSEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G++ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24541.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET + T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGNETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17514.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25125.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89442.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25352.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERLIDIIATDIQTKELXKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++ D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIXDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25097.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIEQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03306.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGNMTPAERLVNMITTEREIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44520.2 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17934.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82712.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVACCDKCQIKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77614.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIRQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TXELQKQITQIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18160.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKVIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61565.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWKAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIVDIIATDIQTQELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77695.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE V GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAVHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENRDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81413.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84569.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D K I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20859.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYRSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMGCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06725.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAX 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + +++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FXSXEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPTERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05799.1 Length: 299 Range 1: 12 to 290 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 72 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 132 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 192 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 252 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 290 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70890.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16546.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84384.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPAVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37258.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +++ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMSV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84516.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16139.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAELIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81404.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84737.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP E+ T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAESGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59808.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPJWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17195.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25225.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25461.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59971.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSEIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84752.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42104.1 Length: 293 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:160/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE GQ+ G Sbjct 1 FIEKIEPAQEEHEKYHSNVKELCHKFGIPNLVARQIVNTCAQCQQKGEATHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKFQKFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V K I ++PRR Sbjct 241 LLWKGEGAVXAKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18034.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXXSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK09309.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPR+ + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRKKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77797.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84835.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87808.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77333.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25363.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96740.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76998.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+++++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAIVIQDQGD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85535.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16735.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82706.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77484.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10493.1 Length: 288 Range 1: 1 to 270 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPGETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81514.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +A+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPXIAKEIVAXCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISSDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V++KD I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77444.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12147.1 Length: 301 Range 1: 8 to 266 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/264(41%), Positives:160/264(60%), Gaps:10/264(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE GQ+ P +WQ+D Sbjct 8 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIANCPKCHIKGEATHGQVDYSPEVWQID 67 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 68 CTHLEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFTSA 127 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 128 TMKAACWWTNIRHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 187 Query 187 FKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 FK++G +G E I Q ++ +Q I QK +YY+D +D WKGP + Sbjct 188 FKRKGGMGGYTAGERIIDILASQIQTTELQKQIFKI-QKFQ---VYYRDSRDPIWKGPAQ 243 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D + I +VPRR Sbjct 244 LLWKGEGAVVIQD-KGDIKVVPRR 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82628.1 Length: 275 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIISQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ATZ77556.1 Length: 279 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQIIKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26689.1 Length: 296 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/275(38%), Positives:165/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A+ HEK+H + + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLENIEPAQEEHEKYHGNVKELVHKFGIPQLVARQIVNSCDKCQQKGEAIHGQVNSELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKSQIDRIRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYEL------------YIQQESLRIQDYFSAIPQKLMMQWLYYKD 230 HC+NFK+RG +G M P E ++Q ++L+ Q++ +YY++ Sbjct 181 HCMNFKRRGGIGDMTPAERIVNMITTEQEIQFLQTKNLKFQNFR-----------VYYRE 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D+ WKGP + + G+G+V++K + I +VPRR Sbjct 230 GRDQLWKGPGELLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77560.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+ +GE GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPAVVAKEIVASCDKCQXKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84349.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89884.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIDQVRDQAXHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPVWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18255.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87894.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29299.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16622.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82266.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76403.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-EGSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17879.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87838.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85530.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILXLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNKITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91489.1 Length: 278 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPRI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE NN LK I + + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVEXMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08956.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17439.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16791.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16335.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16725.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81997.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82793.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60069.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKRVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46589.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46753.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + G+P NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGVPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76183.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68570.1 Length: 288 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/268(41%), Positives:163/268(60%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C +GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWKALASDFGLPPVVAKEIIANCPKCHTKGEAIHGQVDYSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 N+K++G +G E I Q ++ +Q I QK +YY+D +D WK Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILASQLQTTELQKQIFKI-QKFQ---VYYRDSRDPIWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP ++ + G+G+V+++D+ I +VPRR Sbjct 237 GPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16688.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18044.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79075.1 Length: 283 Range 1: 9 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 9 FLDGIDKAQEDHEKYHSNWRTMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 68 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 69 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKIIHTDNGSN 128 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 129 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 188 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 189 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 248 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 249 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UMX34319.1 Length: 275 Range 1: 1 to 270 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWXGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11301.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25429.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84385.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81392.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:175/281(62%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGKETAYFLLKLAGRWPVRTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I +++++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQVKELQKQI-SKIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIMDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29169.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNXVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76350.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQXXHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29285.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76171.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82068.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84521.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18354.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D S Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIISTDXQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76984.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17597.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHIEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQXKELQKQIXKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06694.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L DNG N Sbjct 157 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRXTALFLLKLASRWPITHLHXDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + + VPRR Sbjct 337 LLWKGEGAVILKVGTE-VKAVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16806.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFVLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIIATDIQTKELQQQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47060.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84438.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81341.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVVQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16541.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16214.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16777.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70306.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16379.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82056.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82065.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81509.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/281(39%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQI-SKIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46949.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46975.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47100.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59753.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60998.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61391.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIISTDIQTKELQKQITKXQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+ +D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVJQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76448.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85460.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: USW23767.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ W+YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFWVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92720.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47118.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81875.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85209.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMTSDFNIPAVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76195.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAARWPVKRIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17144.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84336.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85395.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46643.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77417.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE +HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEXYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABD33642.1 Length: 295 Range 1: 8 to 286 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 68 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 188 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXQITKLQNFRVYYRDSRDPLWKGPAK 247 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 248 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 286 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAY15966.1 Length: 258 Range 1: 10 to 258 Score:201 bits(510), Expect:1e-59, Method:Compositional matrix adjust., Identities:99/249(40%), Positives:154/249(61%), Gaps:1/249(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 10 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 69 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IPQET T LL+L VT L TDNG N Sbjct 70 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGAN 129 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + +++ + +A+ Sbjct 130 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANTVETVVLMAV 189 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 190 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 249 Query 242 VEYWGQGSV 250 + + G+G+V Sbjct 250 LLWKGEGAV 258 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22040.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPSRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28281.1 Length: 299 Range 1: 1 to 263 Score:202 bits(514), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C + +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKYQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAINHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25466.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67466.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82021.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTQELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89470.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89476.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81972.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35941.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/286(38%), Positives:170/286(59%), Gaps:14/286(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHTNWRAMASDFNLPPIVAKEIIANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVRAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWL-------YYKDQKDKK 235 NFK++G +G + E + + IQ Q+L Q L YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQ------TQELQKQILKIQHFRVYYRDSRDPI 234 Query 236 WKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 235 WKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFU91918.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK +LGIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQELGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLSNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25545.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIIASCNKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16425.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA++I C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKQIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10671.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81765.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77815.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDIQTKELQKQITKVQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81320.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82057.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17648.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17687.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89451.1 Length: 288 Range 1: 1 to 266 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKAAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05065.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAA 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22093.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIFAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NP+SQ +VE N+ LK I + S++ + +A+ Sbjct 217 FTSQEVKMVAWWVGIEQTFGVPYNPRSQGVVEAMNHHLKTQIDGIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY+ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYRGGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06699.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQIDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WK P Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQPWKEPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16303.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMSSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16398.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNIPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAXHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQXQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84635.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84430.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25024.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77390.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRSMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82360.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17887.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59887.1 Length: 288 Range 1: 1 to 278 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T +L L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQXTAYFILXLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERXVDXIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06044.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQXTGRQTALFLLXLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22083.1 Length: 380 Range 1: 97 to 358 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:104/263(40%), Positives:163/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHERYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TD+G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDSGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADD92865.1 Length: 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADD92872.1 Length: 279 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PHWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42107.1 Length: 293 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK IIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKXIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I + PRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIXPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29401.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61008.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQESHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTTELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76353.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIASDIQTKELQKQITKVQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29368.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22037.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKXITKIQNFRVYYRDSRNPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81979.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMAGEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17767.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERXIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17116.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDJQTXALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21862.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 RQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITSEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71934.1 Length: 286 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMARDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49649.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHERYHSNWRTMASDFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16513.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NRDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25317.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ PGI Sbjct 1 FLDGIEKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQXDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42547.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP + A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVXAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTQELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17101.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18372.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIXGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71177.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQXQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60981.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D KD WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDNKDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84560.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK +VAVHV SG+L A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKTXLVAVHVASGYLEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMXATDIQTKELQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85187.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNXLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98941.1 Length: 288 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:164/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSNWRALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET LL+L + L TDNGPN Sbjct 61 WQMDCTHVEGKVIIVAVHVASGFIEAEVIPAETGQEAAYFLLKLAARWPIKVLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWTNIQHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 N+K++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FVHNYKRKGGIGGYTAGERIIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D + I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQD-KGDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17811.1 Length: 288 Range 1: 1 to 279 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQKTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDMQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71918.1 Length: 286 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ--DYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I + IQ + IP K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIP-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89468.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDXRDPIWKGPAX 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACL35642.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G P E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYCPGERIVDIITTDIQTKELQKQISKIQNFRVYYRDSRNPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84894.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29231.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQJKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDXSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76800.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAIASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18300.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRTMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13688.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRTMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76268.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNATKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKJQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18016.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00290.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINDAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49645.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82425.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03969.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPNTHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDTTPVERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05334.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAGHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+N K+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNLKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89869.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89870.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89871.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89872.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89873.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPVWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45830.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + +K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSSAVKAACWWANVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDTND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVE02424.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE V GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAVHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + I+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82141.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24635.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ + +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKHITNIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++ E I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29341.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK IIVAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKXIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYXAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46659.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/286(38%), Positives:171/286(59%), Gaps:14/286(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKXIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWL-------YYKDQKDKK 235 NFK++G +G + E I + IQ Q+L Q + YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ------TQELQKQIIKIQNFRVYYRDSRDPL 234 Query 236 WKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 235 WKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06049.1 Length: 380 Range 1: 97 to 348 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:101/252(40%), Positives:156/252(61%), Gaps:1/252(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ PQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK 253 + + G+G+V+LK Sbjct 337 LLWKGEGAVILK 348 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82552.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83528.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHFKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29103.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVXMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77294.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIISQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76549.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17570.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPTETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76507.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAARWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85358.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36665.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17802.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAHDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05992.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ +P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFEVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81252.1 Length: 282 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AXR70241.1 Length: 296 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNTCDKCQQKGEAXHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMXAWWXGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + Y A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQYSQAKNLKFKNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I ++PRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVIPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QFD66613.1 Length: 269 Range 1: 1 to 266 Score:201 bits(511), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQMDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12150.1 Length: 299 Range 1: 6 to 264 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/260(42%), Positives:158/260(60%), Gaps:2/260(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L +E+ LP +VA+EI CP C +GE + GQ+ P +WQ+D Sbjct 6 IDQAQEDHEKYHSNWRALASEYGLPPVVAKEIIANCPKCHTKGEAIHGQVDCSPEVWQID 65 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 66 CTHTEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGPNFTSA 125 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + IKH+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 126 SMKAACWWTNIKHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAVFVHN 185 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G E I + +IQ K+ +YY+D +D WKGP ++ + Sbjct 186 FKRKGGIGGYTAGERIIDILASQIQTTELQKQILKIQKFQVYYRDSRDPIWKGPAQLLWK 245 Query 246 GQGSVLLKDEEKGIFLVPRR 265 G+G+V+++D + I +VPRR Sbjct 246 GEGAVVIQD-KGDIKVVPRR 264 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28376.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ ++ ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVVWWVGIEQTFGVPCNPQSQGVVEAMDHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28405.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28407.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ W+GP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWRGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67573.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82253.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I VAVHV SG+ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXIJVAVHVASGYJEAEVIPXETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25364.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDXGKQXAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77502.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVNSCDKCQLKGEAIHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPVWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00302.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIIASCNKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGINQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18157.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIASDIQTKXLQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24901.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFMLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ + ++ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKXLQKQITXIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16814.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76805.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIXKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VA HV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAAHVASGYIEAEVIPAETGQETAFFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42463.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22045.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/272(40%), Positives:167/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S P K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNP-KFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V LK + I +VP R + + + Sbjct 336 ELLWKGEGAVNLKVGTE-IKVVPSRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28331.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIAAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81964.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89484.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77066.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37151.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81792.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29192.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46445.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46549.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVQVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81930.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25382.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQQEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16748.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70909.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDQGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82556.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNIPPVVAKEIIACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61118.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNREPFWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77788.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDNRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60439.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTXELQKXITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21755.1 Length: 263 Range 1: 1 to 263 Score:201 bits(510), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21115.1 Length: 380 Range 1: 97 to 359 Score:204 bits(520), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV S F+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASRFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81305.1 Length: 282 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28361.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:1e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPTTHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10369.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TTELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82091.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09959.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+ +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRGNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29306.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17234.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87733.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QBM14608.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:110/268(41%), Positives:165/268(61%), Gaps:4/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP IVA+EI C C+I+GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ--WLYYKDQKDKKWKGPM 240 NFK+RG +G + E I + IQ Q L +Q +YY+D +D WKGP Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIATDIQTK-ELQNQILKVQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 ++ + G+G+V+++ E I +VPRR ++ Sbjct 240 KLLWKGEGAVVIQ-ENSDIKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16238.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMXXDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKHITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67557.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDDGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52045.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/282(38%), Positives:167/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIASDLQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAN19010.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA++I C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNLPPVVAKQIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATMKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77265.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKXKIJXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29347.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92741.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + I QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TRILQKQISNIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82374.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16604.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83538.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVH SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHAASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17532.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQNQITKISKFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77132.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16756.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + + QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TKVLQKQITNIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85182.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERXIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61426.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T +L+L V TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSXTVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 XIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16885.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25467.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:1e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAELIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91473.1 Length: 278 Range 1: 1 to 278 Score:201 bits(511), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82219.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60931.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68882.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAIKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60067.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84505.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87814.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QBK58164.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07108.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPMRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28370.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVA HV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAAHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEATNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28302.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMMTTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16428.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16586.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68987.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:173/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08914.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16489.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17910.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25552.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVRTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERMIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76181.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/283(37%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C ++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCHLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + D + + QK + + +YY+D KD WKG Sbjct 181 FIHNFKRKGGIGGYSAGERMV---DIIATDLQTKVLQKQITKIQNFRVYYRDSKDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29240.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPXVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22134.1 Length: 288 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASXFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+ G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRXGGIGXYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77746.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAIASDFNLPPVVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF28968.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FISNAMKAACWWAGIKQEFGIPYNPQSQGVIESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I ++PRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVIPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25558.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60348.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91340.1 Length: 278 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77038.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N+ LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNHELKKIIGQVRDQAEXLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77764.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84774.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60531.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61312.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAREIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK09301.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PHWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61024.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20897.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+ A++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLAAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I QET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVILQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05948.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA++I C C G + GQ+ G Sbjct 97 FLEKIEPAQXEHEKYHSNVKELVFKFGIPXLVAKQIVXXCDKCHQXGXAIHGQVNAXLGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLELASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71938.1 Length: 286 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28378.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++ + I +VPRR Sbjct 241 LLWKGEGAVIIRVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85090.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H+++HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHDRYHSNWRAMASDFNIPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76160.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKLVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81835.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16240.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84583.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29194.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16643.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17665.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16916.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16898.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISAMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89477.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/275(40%), Positives:166/275(60%), Gaps:18/275(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKDLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSA-IPQKLMMQWL--------YYKDQKD 233 NFK++G +G + E RI D + IP K + + + YY+D +D Sbjct 181 FIHNFKRKGGIGEYSAGE--------RIIDIIATDIPTKELQKQITKIQNFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 WKGP R+ + G+G+V+++D I +VPRR + Sbjct 233 PIWKGPARLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29269.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDXQTKALQKHISNIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52070.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXVXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSPGERIIDIIATDIQTKELQNQIIKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16282.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17349.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHTEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK+RG +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRRGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76440.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20984.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42129.1 Length: 293 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNIKELCHKFGIPNLVARQIVNTCAQCQQKGEATHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQZTGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNXHLKNQISRIREQANTMETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28463.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIGPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQLLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08957.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMSSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAXIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29398.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIVQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77527.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNMVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKIVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47013.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85204.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16499.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK IIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKTIIVAVHVASGYIEAEVIPAETGQETAYFVLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87855.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQIKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDXIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17885.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQITKXQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96721.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77346.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADM89530.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAFFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIXATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67572.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISADIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22128.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWXGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46521.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPXI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16844.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85003.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37163.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77061.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSGAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77382.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTRELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AMP41510.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVANCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06007.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQAIGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKGRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71877.1 Length: 286 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYSLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AGB52015.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEXLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77575.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKTILVAVHVASGYXEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDXIATDLQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81940.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP56532.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHSNWRAMASDFNLPPIVAKEIVASCDQCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G++ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGLQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPSWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10461.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/278(38%), Positives:167/278(60%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASDIQTRELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17132.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81839.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18250.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNJPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51956.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAARWPVTVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00289.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60223.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60225.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/268(39%), Positives:167/268(62%), Gaps:4/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 ++ + G+G+V+++D + I +VPRR + Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20977.1 Length: 380 Range 1: 97 to 366 Score:204 bits(520), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRPVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABD33646.1 Length: 295 Range 1: 8 to 277 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVACCDKCQLKGEAIHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 68 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKTIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 188 FIHNFKRRGGIGGYSAGERIIDMIATDIQTKELQNQIIKIQNFRVYYRDSRDPIWKGPAK 247 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR + + + Sbjct 248 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIKD 277 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17568.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96564.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18278.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85167.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70342.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76454.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP E T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAENGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20939.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTRDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIGQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18347.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84685.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AQL58569.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/284(39%), Positives:172/284(60%), Gaps:10/284(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +G + E I + ++ +Q+ + I QK +YY+D +D WK Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQNQITEI-QKFR---VYYRDSRDPLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 GP R+ + G+G+V+++D I +VPRR + + + GD+ Sbjct 237 GPARLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25580.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA EI C C+++GE + GQ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMXSEFNLPPIVAXEIVASCDKCQVKGEAMHGQXDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDXIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76823.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVTAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16796.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49701.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60935.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69006.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNLPPVVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYCAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16506.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17921.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21783.1 Length: 263 Range 1: 1 to 263 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28332.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTPQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25386.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82566.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQ---TKELQKQITKXQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase protein, partial [Human immunodeficiency virus 1] Sequence ID: ASV46099.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16969.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25199.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89454.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:166/270(61%), Gaps:8/270(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERII---DIIATDIHTKELQKQITKIQNFRVYYRDNRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 P R+ + G+G+V+++D+ I +VPRR + Sbjct 238 PARLLWKGEGAVVIQDBSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18202.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17957.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84625.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84626.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61516.1 Length: 288 Range 1: 2 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGIW Sbjct 2 LDGIDKAQEDHEKYHSNWRXMAXDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIW 61 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 62 QLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNF 121 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 122 TSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVF 181 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E + + IQ K+ +YY+D KD WKGP ++ Sbjct 182 IHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAKL 241 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 242 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44524.2 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11383.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTMKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 XIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60061.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FVSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGMYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76457.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60278.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGQRIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06645.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHPHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21849.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84307.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16081.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17557.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82102.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D + I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46507.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISSDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + G++ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGBD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77432.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V+ + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVSVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82869.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37180.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61597.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWKAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIVDIIATDIQTQELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84859.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16658.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16825.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17977.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85287.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16945.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84272.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKALQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17494.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42223.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76116.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84429.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84524.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60328.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61581.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTIKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00321.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAIASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK + Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQ---TKELQKQITQLQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81291.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17123.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW---------LYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDIQTKELQXQITXIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42510.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L T + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPXTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76556.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85468.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDRCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHVEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17627.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFH96850.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60147.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60155.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17952.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60547.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDXIATDLQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76470.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYTAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82000.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71922.1 Length: 286 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+VL++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVLIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47058.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59852.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84789.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25502.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61198.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:170/274(62%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase protein, partial [Human immunodeficiency virus 1] Sequence ID: ASV46126.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMAXEFNLPPIVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDMIATDIQTKELQKQISKLQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77658.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/283(38%), Positives:174/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMXSDFNLPPVVAKEIVASCDXCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPVWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68998.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84931.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18334.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVIAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 2] Sequence ID: QGV16574.1 Length: 282 Range 1: 1 to 263 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HE +H++ + L +F LP++VA +I CP C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEXYHTNIKELSHKFGLPQLVARQIVNTCPQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A++IPQETA T LL+L +T L TDN N Sbjct 61 WQMDCTHLEGKIIIXAVHVASGFIEAEVIPQETARQTALFLLKLASRWPITHLHTDNRTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ ++E N LK I K + ++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVIEAMNGHLKNQISKIREQANXIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ-KLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLHTKNLKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K I +VPRR Sbjct 241 LLWKGEGAVIVKVGTD-IKVVPRR 263 >pol, partial [Simian immunodeficiency virus] Sequence ID: AIG51563.1 Length: 1020 Range 1: 728 to 992 Score:215 bits(548), Expect:2e-59, Method:Compositional matrix adjust., Identities:111/266(42%), Positives:165/266(62%), Gaps:1/266(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I +A+ HE++H++ Q LR F +P ++A+EI + CP C+ +GE + GQ+ + G+ Sbjct 728 FLEQIPQAQEEHERYHNNWQDLRDRFQIPALIAKEILKACPKCQGKGEPMHGQVNMEVGL 787 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG+ A++IPQET T LLQL VT++ TDNGPN Sbjct 788 WQMDCTHLEGKIIIVAVHVASGYTEAKLIPQETGKETAIFLLQLCARWPVTQIHTDNGPN 847 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q++ + ++H G+P NPQSQ +VEN N LK I K E L+ A+A+AL Sbjct 848 FTSQELAAAAWWANVQHSTGVPYNPQSQGVVENKNRQLKETIGKIRDEVQYLETAVAMAL 907 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 LNFK+RG +G M P E I ++ + IP K +YY+ K +W GP ++ Sbjct 908 LILNFKKRGGIGGMTPAERIINMIHTELELQQTKIP-KFSNFRVYYRTGKSPEWLGPAQL 966 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIR 268 + G+G+V++K + VPRR + Sbjct 967 LWKGEGAVVIKTTTGELLTVPRRKAK 992 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76489.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXXVXAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85329.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16180.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H + + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHXNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16458.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87885.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:171/291(58%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELY------------IQQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E +Q++ +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISSDIQTKELQKQITKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V++KD I +VPRR + + + GD+ Sbjct 230 SRDPLWKGPAKLLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84453.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIMDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17728.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDRCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHVEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77166.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42512.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46679.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81651.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKLSNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKXIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACO71327.1 Length: 307 Range 1: 20 to 298 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 20 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 79 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 80 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 139 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 140 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 199 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + I QK + +YY+D +D WKG Sbjct 200 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TRILQKQISNIQNFRVYYRDSRDPLWKG 256 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 257 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 298 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX15416.1 Length: 312 Range 1: 25 to 303 Score:202 bits(514), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 25 FLDGINEAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 84 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 85 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 144 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 145 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 204 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 205 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 264 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 265 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 303 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84299.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28343.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++ E A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKTEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81888.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77405.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70859.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAXDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDLQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NRDIKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46417.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G++ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVRQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82798.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16612.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17999.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87718.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71192.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTMKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22239.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALLLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91477.1 Length: 278 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/279(38%), Positives:170/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++ E+K I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQ-EDKDIKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ATZ77372.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/283(38%), Positives:174/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKTIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61472.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96796.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68908.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E ++I ++ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVHIIATDIQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-LKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77064.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82760.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16178.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82783.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIAXDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77555.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKQLQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16564.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17771.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68992.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSGAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVPMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77842.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D W+GP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQKFRVYYRDSRDPXWRGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09225.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQQKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIISQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRCSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70808.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPVETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60258.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWXAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + I+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + I QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERII---DIIATDXQTRILQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D+ + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDDNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37230.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92729.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLRLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16625.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + +T L A+ +A+ Sbjct 121 FTSTTVKAAYWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQTEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16901.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59721.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVSSGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDJQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17785.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16893.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84449.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP56438.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIASDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17895.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29244.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83518.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKITGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76239.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNZLKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIEKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UXM24899.1 Length: 284 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPNF Sbjct 61 QLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 TSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E I + IQ K+ +YY+D +D WKGP ++ Sbjct 181 IHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKL 240 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05256.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKKRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84288.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACB36799.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKTACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49762.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITNIQKFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78972.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D + I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSE-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59561.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89474.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRNPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00322.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35949.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45750.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85396.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:164/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIIJVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76240.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FISXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87716.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76425.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP+ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPEETGQETAYFLLKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82477.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE +HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEXYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82384.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49791.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +Y++D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04099.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLVGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGTN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + G++ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGVEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +Y ++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYCREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28297.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28279.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82753.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89925.1 Length: 288 Range 1: 1 to 266 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQS+ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSRGVVESMNKKLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68967.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83473.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + +T L A+ +A+ Sbjct 121 FTSATVKAACGWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQTEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKLQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24879.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL W+YY+D +D WKGP + Sbjct 181 FXHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFWVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRNYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46535.1 Length: 288 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPHVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAHFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++ E I +VPRR Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17421.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAXDFNIPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82703.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGKWPVKTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68996.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVQTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68851.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QPZ86442.1 Length: 290 Range 1: 3 to 281 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 3 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 62 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 63 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 122 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 123 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 182 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 183 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 242 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 243 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 281 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91449.1 Length: 278 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:4/280(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I ++ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDMQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 ++ + G+G+V+++D I +VPRR ++ + + GD Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43124.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIKH+ GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKHEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASEMQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29165.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISASVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77567.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANXFNLPPIVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIKH+ GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKHEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85384.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++F++P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFSIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77274.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQXEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IRVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35926.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGSDTAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATEIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82761.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16826.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNKITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18247.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46953.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61062.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29110.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+IIP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEIIPAETGXETAYFJLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: QOQ51517.1 Length: 291 Range 1: 2 to 261 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/261(39%), Positives:158/261(60%), Gaps:2/261(0%) Query 6 RIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQM 65 +IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G WQM Sbjct 2 KIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVDAEVGTWQM 61 Query 66 DCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKN 125 DCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG NF + Sbjct 62 DCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGANFTS 121 Query 126 QKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCL 185 Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A HC+ Sbjct 122 QDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETVVLMATHCM 181 Query 186 NFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMRVEY 244 NFK+RG +G M P E I + + + K +Y+++ +D+ WKGP + + Sbjct 182 NFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKFKNFRVYFREGRDQLWKGPGELLW 241 Query 245 WGQGSVLLKDEEKGIFLVPRR 265 G G+V++K I +VPRR Sbjct 242 KGDGAVIVKVGTD-IKVVPRR 261 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28364.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGA 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ W+GP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWRGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28292.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28299.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28300.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28304.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28306.1 Length: 299 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44574.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17306.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16584.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17730.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28245.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16250.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68175.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAELLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17743.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84409.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87882.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87887.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96556.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84731.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81311.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21771.1 Length: 263 Range 1: 1 to 263 Score:200 bits(509), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28409.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++G++ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGMEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85455.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70840.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK + Q +YY+D +D WKG Sbjct 181 LIHNFKRKGGIGGYSAGERIVDIIATDIQ---TKELQKQITQIQKFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70314.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +Y++D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKLQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46499.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +F LP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMANDFGLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17599.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17449.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVRTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKTIIGQXRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERMIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17452.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEADVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17182.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDLQTKELQKQIT-KLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29128.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77319.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78968.1 Length: 288 Range 1: 1 to 270 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81639.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK +LGIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQELGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I + + +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQITKXQNFR-VYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28922.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04327.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ K I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHPKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UZY21305.1 Length: 339 Range 1: 52 to 330 Score:203 bits(516), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 52 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 111 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 112 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAVHTDNGPN 171 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 172 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 231 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 232 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 291 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 292 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 330 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADQ26690.1 Length: 301 Range 1: 1 to 263 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE +H + + L +F +P++VA +I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEXYHGNMKELVHKFGIPQLVARQIVNSCDKCQQKGEAVHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIXHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + SL+ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSLETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFXQAKNLKFXNFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16988.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18191.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18377.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59854.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVAXCDKCQJKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37239.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ KL +Y++D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84743.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59935.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + IK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWANIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16724.1 Length: 288 Range 1: 1 to 278 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44559.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09194.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82862.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37191.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D KD WKGP R Sbjct 181 FIHNFKRKGGIGXYSAGERLIDIIATDIQTKELQKHITKIQHFRVYYRDNKDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77046.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKRIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36576.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/283(37%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + D + I QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIV---DIIATDLQTQILQKQITKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I ++PRR ++ + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVIPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29309.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILXLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28126.1 Length: 288 Range 1: 1 to 279 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42126.1 Length: 293 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:159/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G Sbjct 1 FLERIEPAQEEHEKYHSNVKELSHKFGIPKLVARQIVNTCAQCQQKGEAIHGQVNAEVGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+ LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIXAEVIPQQXGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I K + + + + +A Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNXHLKNQISKIREQANTXETIVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKFKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84267.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12156.1 Length: 302 Range 1: 9 to 267 Score:202 bits(513), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/266(41%), Positives:161/266(60%), Gaps:14/266(5%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P +WQ+D Sbjct 9 IDQAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEVWQID 68 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKIIIVAVHV SGF+ A++IP ET T LL+L V + TDNGPNF + Sbjct 69 CTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPNFXSA 128 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I+H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 129 TMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAVFVHN 188 Query 187 FKQRGRLGRMAPYE-------LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGP 239 FK++G +G E +IQ L+ Q + K+ +YY+D +D WKGP Sbjct 189 FKRKGGIGGYTAGERIIDILASHIQTTELQKQIF------KIQNFQVYYRDSRDPIWKGP 242 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRR 265 ++ + G+G+V+++D + I +VPRR Sbjct 243 AQLLWKGEGAVVIQD-KGDIKVVPRR 267 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85060.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDIQTKELQKQITKXQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37232.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D+ + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDQSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81682.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW---------LYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTXELQXQIXKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87857.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERJVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84399.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHMEGKIIIVAVHVASGYIEAEVIPAETGQETAYFVLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11375.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11376.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18239.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82040.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60231.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + E Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRE 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16488.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16763.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60781.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + IK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWADIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84791.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIVATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84494.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84599.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87916.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13689.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFLLKLAGRWPVKTVHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17005.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04047.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKSASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22246.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRGQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+ FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMLFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84258.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28978.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIXKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82879.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37184.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85286.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDXRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77636.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGITEAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84924.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87921.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81539.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81885.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62766.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQXDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84995.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNJPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQXQIXKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85035.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70806.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDLQTKALQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACB36817.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A++ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQVEHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67536.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGISEAQEEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16318.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCHPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGAYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16056.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16174.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25380.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17714.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82805.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18273.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17912.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNJPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44568.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10543.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVSCCDKCQVKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96631.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESXNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17203.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDMIASDIQTKELQKHITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77431.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28994.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVLPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17345.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDYSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >Gag-pol polyprotein precursor [Simian immunodeficiency virus] Sequence ID: CBY88596.1 Length: 1443 Range 1: 1169 to 1436 Score:216 bits(549), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/269(40%), Positives:168/269(62%), Gaps:2/269(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A H KFH++ L+ +F++P IVA++I +C C+ +GE + GQ+ + GI Sbjct 1169 FIEKIEPAVEEHGKFHNNAASLQEQFDIPLIVAKQIVNECAQCQQKGEAITGQVDVSIGI 1228 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH K+IIVA+HV SGF+ A+++P ET T LL+L V + TDNGPN Sbjct 1229 WQIDCTHMEEKVIIVAIHVASGFMVAEVLPNETGKATATWLLKLCATWPVKHIHTDNGPN 1288 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F ++ +E + ++GI+H GIP NPQSQ +VE N LK I + + L A+ +AL Sbjct 1289 FISKDVEAVCWWLGIQHTTGIPYNPQSQGVVEAKNKVLKQIITRIREDAQELKTAVLMAL 1348 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 H NFKQRG LG M E +I + ++ Y + K++ +YY++ +D +WKGP + Sbjct 1349 HIHNFKQRGGLGGMTAAERFINMINADLESQYLQKLNSKILKFKVYYREGRDPQWKGPAQ 1408 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRV 270 + + G+G+V++K E I +VPRR + V Sbjct 1409 LLWKGEGAVVIKQGEN-ILVVPRRKAKLV 1436 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28303.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96654.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67553.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINEAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQHFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17932.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67569.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+IIP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEIIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76420.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAXFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16351.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85155.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89448.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G G+V+++D+ I +VPRR + Sbjct 241 LLWKGDGAVVIQDBSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77525.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++I ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIXAETGQETAYFILKLAGRWPVRAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQISKIQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36483.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISASVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60485.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKI++VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIVLVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25263.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMXSDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQXVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77709.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ +HEK+HS+ + + ++FNLP +VA+EI C C+ +GE GQ+ PGI Sbjct 1 FLDGIDEAQADHEKYHSNWRAIXSDFNLPPVVAKEIVASCDKCQXKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAXRWPVXVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + E GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIREYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81969.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16274.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67454.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18381.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16772.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24625.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERMVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28841.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVLPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77377.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++F LP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFXLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSNALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21133.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVNYREGRDLLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21758.1 Length: 263 Range 1: 1 to 263 Score:200 bits(509), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UWJ07215.1 Length: 286 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46765.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLNGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84413.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85171.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87867.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81652.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81925.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIISQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKQLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89908.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89909.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89910.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89911.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89912.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQS+ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSRGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46995.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + T+FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMATDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78979.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQIDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70873.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQI-SKIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKVIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17979.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78951.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/272(39%), Positives:169/272(62%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 ++ + G+G+V+L+D + I +VPRR ++ + + Sbjct 240 KLLWKGEGAVVLQDNSE-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82520.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87797.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47130.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16917.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18304.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76496.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/278(38%), Positives:167/278(60%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGMGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25344.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76472.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMAADFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04023.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVVKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G+IIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQVDCTHLEGRIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNYHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 2] Sequence ID: QLK12557.1 Length: 490 Range 1: 198 to 460 Score:207 bits(527), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP ++A +I C C+ +GE + GQ+ GI Sbjct 198 FLERIEPAQEEHEKYHSNVKELSHKFGLPTLIARQIVNTCNQCQQKGEAIHGQVNAELGI 257 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 258 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 317 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 318 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQINRIRDQANTVETIVLMAV 377 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 378 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 437 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 438 LLWKGDGAVIVKVGTD-IKVVPRR 460 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ASY08081.1 Length: 290 Range 1: 1 to 263 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:160/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS + L +F +P +VA +I C C+ +GE GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSTIKELSHKFGIPNLVARQIVNTCAQCQQKGEATHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNRHLKNQISRIREQANTMETVVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKIIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76459.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18127.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHXEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18350.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47078.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIVATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus] Sequence ID: AEY77221.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVQVJHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+ +D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVJQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADK35700.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70332.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMXSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + IQ K+ +YY+D +D WKGP + Sbjct 181 XIHNFKRKGGIGGYSAGERIVDIIXTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00320.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84630.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87724.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96799.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20908.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHERYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L + L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPIAHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLTAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06669.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVRELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37237.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:173/283(61%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G E + + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60711.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61162.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81519.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTRELQNQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18366.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84391.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25376.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMVSEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17777.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28239.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25161.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16168.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAXVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82214.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60789.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQVDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTRELQKQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77468.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDRCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V+ + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVSTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04278.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIIDACDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQS +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSPGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71126.1 Length: 280 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMVSDFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91548.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAZVIPAETGQETAYFXLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28397.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVH SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHAASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67548.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81744.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16731.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGAVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82765.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMXSDFNLPPVVAKEIXASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQITKXQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51953.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWKAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVRVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSPGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76920.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAXFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16091.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16396.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42930.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16354.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHDKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDMQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16162.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKGLQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16454.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16557.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17760.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84337.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81883.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACB36794.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V++ D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIXDNSD-IKVVPRRKAKXIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17120.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47015.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:169/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85536.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87892.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24749.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/286(38%), Positives:170/286(59%), Gaps:14/286(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWL-------YYKDQKDKK 235 NFK++G +G + E I + IQ Q+L Q + YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ------TQELQKQIIKIQNFRVYYRDSRDPL 234 Query 236 WKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 235 WKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82839.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEAHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18373.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQNQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46781.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17974.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84767.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70842.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71871.1 Length: 286 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16054.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16069.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71687.1 Length: 281 Range 1: 1 to 275 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/276(38%), Positives:166/276(60%), Gaps:2/276(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGIWQ+D Sbjct 1 IDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLD 60 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPNF + Sbjct 61 CTHLEGKVILVAVHVASGYIEAELIPAETGQETAYFLLKLAGRWPVKTIHTDNGPNFTSS 120 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 ++ + GIK + GIP NPQSQ +VE+ N LK I + L A+ +A+ N Sbjct 121 AVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDXAEHLKTAVQMAVFIHN 180 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G + E + + IQ K+ +YY+D +D WKGP ++ + Sbjct 181 FKRKGGIGEYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWK 240 Query 246 GQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 G+G+V+++D K I +VPRR + + + GD+ Sbjct 241 GEGAVVIQD-NKDIKVVPRRKAKIIRDYGKQMAGDB 275 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46905.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + Q K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDJQTKELQKQIXKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77777.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16695.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTNELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16550.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76551.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDXSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61345.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPXXVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGDYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52053.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKMIHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76777.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK+ I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKLIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16535.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAADFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82233.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKSIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17861.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK IIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKTIIVAVHVASGYIEAEVIPAETGQETAYFVLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59589.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIATDIQTKELQNQIXKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17824.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85011.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQXQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84381.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGGYSAGERIVDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42312.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIS-KLQKFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKF02456.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMXGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ + + Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMXV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76259.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLEGIDKAQXEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIITTDIQTRELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17949.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25060.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61028.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60941.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29037.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37175.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76126.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDXHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLXLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81786.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VA+HV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAIHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87822.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84572.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84807.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07112.1 Length: 380 Range 1: 97 to 366 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKESVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMDFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGV 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UXM24825.1 Length: 284 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:166/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D IE+A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIEKAQDDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAIHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNG NF Sbjct 61 QLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTJHTDNGSNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 TSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E + + IQ K+ +YY+D +D WKGP ++ Sbjct 181 IHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAKL 240 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91313.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKXLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UOP56426.1 Length: 292 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKKIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVRNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAY15967.1 Length: 264 Range 1: 16 to 264 Score:200 bits(509), Expect:2e-59, Method:Compositional matrix adjust., Identities:99/249(40%), Positives:154/249(61%), Gaps:1/249(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 16 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNADLGT 75 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI+IVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 76 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 135 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+H G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 136 FTSQEVKMVAWWTNIEHTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAV 195 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ WKGP Sbjct 196 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 255 Query 242 VEYWGQGSV 250 + + G+G+V Sbjct 256 LLWKGEGAV 264 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47037.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01963.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPMVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus] Sequence ID: AEY77261.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNXQLKXIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G +P E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSPGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85064.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17272.1 Length: 288 Range 1: 5 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/276(38%), Positives:167/276(60%), Gaps:2/276(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGIWQ+D Sbjct 5 IDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDRCQVKGEAMHGQVDCSPGIWQLD 64 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPNF + Sbjct 65 CTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPNFIST 124 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ N Sbjct 125 TVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAVFIHN 184 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G + E I + IQ K+ +YY+D +D WKGP ++ + Sbjct 185 FKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWK 244 Query 246 GQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 G+G+V+++D I +VPRR + + + GD+ Sbjct 245 GEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84510.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85448.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16358.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60567.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIXKAQEDHERYHSNWRTMVSDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09252.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQXFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AGB51985.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68844.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTEIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96800.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVEAMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87706.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01542.1 Length: 304 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01633.1 Length: 304 Range 1: 17 to 295 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ + K+ +YY+D +D WKGP Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIVASDLQTKELQKQVT-KIQNFRVYYRDSRDPLWKGPA 255 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 256 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28298.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:165/267(61%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ +R + A K +YY++ +D+ WKG Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIR---FLQAKNLKFKTFQVYYREGRDQLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V++K + I +VPRR Sbjct 238 PGELLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03284.1 Length: 380 Range 1: 97 to 359 Score:204 bits(519), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLKKIEPAQEEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIRKQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87758.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQXTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17199.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIVATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28863.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++F +P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFXIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXL09961.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH KII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEKKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18130.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+IRGE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIRGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGRQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85350.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: WDY34856.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKXXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXXVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77594.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTEIQTKELQKHITKIQNFRVYYRDSRDPFWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89529.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKKKGGIGGYSAGE--------RIIDIIASDLQTKALQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77670.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQXKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTXALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17032.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76408.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIIDIISTDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25101.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87726.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L + + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPIKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16400.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46719.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46881.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17826.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61500.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKI++VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIVLVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84312.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACI62447.1 Length: 289 Range 1: 1 to 280 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:165/280(58%), Gaps:1/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +F LP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFGLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQIXKIQNFQVYYRDSRDPTWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + V GD+ Sbjct 241 LLWKGEGAVVIQDNSGDIKVVPRRKAKIVRNYGKQMAGDD 280 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QIQ18633.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/282(37%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVMPTETGQDTAYYILKLAGRWPVTVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVLKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16820.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16585.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPHWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60929.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68918.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76299.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIXTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKRGGIGEYSAGERIVDIIATDIQTKELQKQISKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25571.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76349.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVETIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77241.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVXTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSGAMKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16957.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82825.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16869.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18012.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18135.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18162.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76634.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84597.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87688.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18158.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29363.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29372.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24857.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16559.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16629.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17373.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FN+P +VA+EI C C ++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNIPPVVAKEIVASCDKCXLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16930.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71885.1 Length: 286 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGAGTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84268.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:164/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H + + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQXEHEKYHXNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + S IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGGYSAGERIVDIISTDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16058.1 Length: 282 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D W+GP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWRGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06037.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 H +NFK+RG +G M P E + + + F + +YY++ +D+ W+GP Sbjct 277 HRMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWEGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81559.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81965.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMAGEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89510.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/283(39%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + Q +YY+D ++ WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TKALQKQITQIQNFRVYYRDSREPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84711.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIERAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V ++ TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKKVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22102.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI87258.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNSVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59901.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKIVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17114.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ASM56753.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGPETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87752.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82508.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPSETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81804.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81431.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELHKQISKVQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16708.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP ++A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVIAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28199.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESXNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIISTEIQTQALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI87253.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16680.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84263.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17723.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAXQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17210.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G+II+VAVHV SG++ A++IP ET T +L+L VT L TDNG N Sbjct 61 WQLDCTHLEGRIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77028.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84792.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60623.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQXKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82112.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIVGQIRDQAEHLKTAIQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82411.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18268.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMAXEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82594.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71125.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDXIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81296.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91280.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGTVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84455.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXDHEKYHXNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ATZ77422.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82148.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDXIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82193.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QBK58159.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:168/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQDTAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVRAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84745.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16388.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00315.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D + I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSE-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16268.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85072.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAKIIRDYGKQXAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82560.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERMIDIIATDIQTKELQKXIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81810.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVACCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQSQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25492.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82291.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGXVESMNNZLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87693.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81314.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28295.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDECQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22055.1 Length: 380 Range 1: 97 to 348 Score:204 bits(518), Expect:2e-59, Method:Compositional matrix adjust., Identities:101/252(40%), Positives:156/252(61%), Gaps:1/252(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQADSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLK 253 + + G+G+V+LK Sbjct 337 LLWKGEGAVILK 348 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29154.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18307.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84903.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AET08856.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96734.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17536.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+GSV+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGSVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18154.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18199.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85322.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHDKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+ A++I ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYJEAEVIXXETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIXTDJQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82717.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKLIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28891.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76806.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVANCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81993.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81595.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDRCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIRQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01546.1 Length: 304 Range 1: 17 to 295 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 255 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 256 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05333.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + I+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 STSQEVKMVAWWAEIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03373.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:167/267(62%), Gaps:8/267(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 RQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYE----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKG 238 HC+NFK+RG +G M P E + ++ ++ Q ++ K +YY++ +D+ WKG Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQGIQFQQSKNS---KFKNFRVYYREGRDQLWKG 333 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRR 265 P + + G+G+V+LK + I +VPRR Sbjct 334 PGELLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87881.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADM89525.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVGEFNIPPVVAKEIIACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84732.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89445.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVNDFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP R Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82035.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFH96869.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQIIKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16548.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52178.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKZLKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTXELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82299.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ +K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQIKKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16655.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18035.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68860.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/283(39%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPVWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29184.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF28947.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTTHLQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+++++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGALVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79079.1 Length: 283 Range 1: 10 to 279 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 10 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 69 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 70 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 129 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 130 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 189 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 190 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TNELQKQIIQIQNFRVYYRDSRDPIWKG 246 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+++D I +VPRR ++ + + Sbjct 247 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46787.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQISKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13666.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77855.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I ++I++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQIKELQKQIT-KIQNFRVYYRDNRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17837.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68850.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + +FNLP ++A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMANDFNLPPVIAKEIVACCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16659.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82158.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHTNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWXGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17804.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84367.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVNCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84936.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16199.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81903.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQNQITKISKFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16687.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28330.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:164/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM+CTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQMNCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFRVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28320.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:2e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIV VHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVVVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQ Q +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQGQGVVEGMHHHLKNQIDRLRDQAVSMETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06701.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + Q+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHRQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGAPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76172.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18126.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17818.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84566.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDMQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84499.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82162.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAXQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29078.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84875.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70336.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+ +++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAXVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16920.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82537.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89526.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVSDFNIPAVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29119.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXXKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51941.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/282(37%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17803.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91436.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:2e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKLIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16733.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60609.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 + NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 YIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81512.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60063.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEAHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTTELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46557.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61400.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRXMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGXETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKXKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60217.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQI-SKLQNFRVYYRDNRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29039.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82933.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:169/283(59%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEDHEKYHSNWRAMASEFNLPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDIQ---TKALQKHITNIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18330.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62746.1 Length: 287 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTRELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85183.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASDFNIPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIXVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69004.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHERYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17323.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82395.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84624.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDVIATDMQTKALQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81343.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85444.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22153.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82076.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVATVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17697.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTCATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16362.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRXYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67503.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRSMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42465.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +GR E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGRYTAGE--------RIIDIIASDIQTKELQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47208.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMAEEFNLPSVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQ+Q +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWXGIKQEFGIPYNPQNQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17542.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPJWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16971.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59545.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXXXKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85447.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82775.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82231.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXXHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84727.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17077.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17516.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18017.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28899.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71888.1 Length: 286 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07148.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA +I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAIQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIEAIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNSRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07118.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++++ + + GI+ G+P +PQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSREVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81688.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:103/280(37%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE +H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEXYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82203.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLXLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60967.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60250.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + L ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRALASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + I+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWADIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84926.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10492.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85393.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44567.2 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46933.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81917.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + E GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIREYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85053.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKQLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX15409.1 Length: 401 Range 1: 114 to 392 Score:204 bits(520), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+EA+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 114 FLDGIDEAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 173 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 174 WQLDCTHLEGKVIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 233 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L AL +A+ Sbjct 234 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTALQMAV 293 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 294 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 353 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 354 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 392 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28325.1 Length: 299 Range 1: 1 to 263 Score:201 bits(512), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCGKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L +DNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHSDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR07038.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:161/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTRDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGGQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQGVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29022.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77414.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSNTFKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25127.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16870.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76999.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMASDFNLPXIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37181.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81656.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46607.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ H K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHXKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82572.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQXDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEQLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29267.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17976.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81935.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++I ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVISAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89894.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L + + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPIKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIDQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPVWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85381.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQNEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77781.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17023.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35929.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16755.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWXAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L+ A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLNTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FITNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68933.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46873.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSSMVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+ +++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAXVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71557.1 Length: 268 Range 1: 1 to 265 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:4/267(1%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I+EA+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIDEAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 61 QLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + M+ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 TSAAMKAACWWAGIQQEFGIPYNPQSQGVVESXNKELKKIIGQVRDQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I +R ++ I K+ +YY+D +D WKGP + Sbjct 181 IHNFKRKGGIGGYSAGERIIDIIASDIRTKELQKQIT-KIQNFRVYYRDSRDPIWKGPAK 239 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 240 LLWKGEGAVVIQDNNE-IKVVPRRKAK 265 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79048.1 Length: 283 Range 1: 10 to 275 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 10 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQIKGEAIHGQVDCSPGI 69 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 70 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 129 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 130 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 189 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 190 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 249 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 250 LLWKGEGAVVIQDNSD-IKVVPRRKVK 275 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71196.1 Length: 274 Range 1: 1 to 266 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/268(39%), Positives:169/268(63%), Gaps:4/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D ++ WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSREPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 ++ + G+G+V+++D + I +VPRR + Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AQL57538.1 Length: 288 Range 1: 1 to 266 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AGB51959.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKAVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17004.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVEXMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46253.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVQAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46919.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16983.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16547.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDFGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82531.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +A+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPXIAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81435.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81886.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81897.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59553.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28984.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 N K++G +G + E + + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNXKRKGGIGGYSAGERIVDIIAXDJQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84313.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77292.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKLHXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84394.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00328.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84377.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29060.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQADHEKYHNNWRAMXSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK09299.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:171/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +++NLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDYNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +GR + E + + IQ + QK + Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGRYSAGERIVDMIATDIQ---TKELQKHITQIQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45877.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60409.1 Length: 288 Range 1: 1 to 270 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/282(37%), Positives:168/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GK+I VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQXDCTHLEGKVIJVAVHVASGYIEAEVIPAETGQETAYXILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18027.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VA HV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAAHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84780.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16800.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18206.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHISKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78960.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46553.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13710.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK + ++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TRELQKQITKFHNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71944.1 Length: 286 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03337.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFQLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10356.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + +++ + G++ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTQVKAACWWAGVQQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYCAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46343.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46453.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17863.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70823.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29189.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPXVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85439.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QJC70354.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACX34566.1 Length: 517 Range 1: 231 to 508 Score:207 bits(528), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:170/279(60%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C CR++GE + GQ+ PGIW Sbjct 231 LDGIDKAQEDHEKYHSNWRAMTSDFNLPPVVAKEIVASCDKCRLKGEAMHGQVDCSPGIW 290 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPNF Sbjct 291 QLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPNF 350 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 351 ISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEQLKTAVQMAVF 410 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP ++ Sbjct 411 IHNFKRKGGIGRYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAKL 470 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 471 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 508 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82697.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28839.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIERAQEDHEKYHSNWRAMASDFNLPPVIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92700.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85288.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81803.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85142.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ABR68198.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82456.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ATZ77279.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:110/284(39%), Positives:170/284(59%), Gaps:10/284(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQMKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +GR + E I ++ +Q S I QK +YY+D +D WK Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQTKELQKQISXI-QKFR---VYYRDSRDPIWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 GP ++ + G+G+V+++D I +VPRR + + GD+ Sbjct 237 GPAKLLWKGEGAVVIQDNSD-IKVVPRRKXKIJXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16365.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16886.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16939.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18331.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17406.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQINKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77301.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRXMASDFNIPPVVAKEIIACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82036.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84811.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGAVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76074.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNXELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17139.1 Length: 288 Range 1: 1 to 278 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85504.1 Length: 288 Range 1: 2 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGIW Sbjct 2 LDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIW 61 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 62 QLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNF 121 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 122 TSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVF 181 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E + + IQ K+ +YY+D +D WKGP ++ Sbjct 182 IHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKL 241 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR + + + GD+ Sbjct 242 LWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82443.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61272.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKRIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDXRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82194.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKZLKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSSKIQHFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82493.1 Length: 288 Range 1: 1 to 279 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPXI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHTEGKVIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKTIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QCO90373.1 Length: 287 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFLLKLAGRWPVRTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82672.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UMX34312.1 Length: 275 Range 1: 1 to 263 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:166/275(60%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDXCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D I +VPRR Sbjct 230 SRDPIWKGPAKLLWXGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04344.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V ++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVVKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 STSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNLRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84969.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17868.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78980.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16827.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEARHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16599.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18132.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37204.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKTACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82518.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEALHGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYTAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00333.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:18/279(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDIQTKELQKQIIKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 WKGP ++ + G+G+V+L+D+ I +VPRR ++ + + Sbjct 233 PIWKGPAKLLWKGEGAVVLQDKSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68873.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17588.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18102.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPXVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91479.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09227.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68968.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49756.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIHNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70892.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQIIKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24909.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82117.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQXVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52029.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/282(39%), Positives:166/282(58%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG LG + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGLGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00275.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTNVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR + + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16280.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84441.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKLSNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52117.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/282(38%), Positives:167/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25440.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + + FNLP VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASXFNLPPXVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPXETGQETAYFJLKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ NN LK + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQKFGIPYNPQSQGIVESMNNELKKIXGQIRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84374.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAFFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76248.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25054.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQDTAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25276.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60157.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAKEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGEYSAGE--------RIIDIIASDIQTKELQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEW47814.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + L ++ N+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRALASDLNIPPVVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82001.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16258.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25078.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCXPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77314.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKNIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q ++Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDLQTKLLQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01643.1 Length: 304 Range 1: 17 to 295 Score:201 bits(512), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ + K+ +YY+D +D WKGP Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIVASDLQTKELQKQVT-KIQNFRVYYRDSRDPLWKGPA 255 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 256 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45836.1 Length: 287 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I+ + G+P NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWANIQQEFGVPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQTD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QGM78082.1 Length: 283 Range 1: 2 to 267 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGIWQ+D Sbjct 2 IDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDQCQLKGEAIHGQVDCSPGIWQLD 61 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG NF + Sbjct 62 CTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTVIHTDNGTNFTSA 121 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 ++ + G++H+ GIP NPQSQ +VE+ N LK I + + L A+ +A+ N Sbjct 122 AVKAACWWAGLQHEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHN 181 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G + E I + IQ K+ +YY+D +D WKGP ++ + Sbjct 182 FKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPSWKGPAKLLWK 241 Query 246 GQGSVLLKDEEKGIFLVPRRHIRRVPE 272 G+G+V+++D I +VPRR + + + Sbjct 242 GEGAVVIQDNSD-IKVVPRRKAKIIKD 267 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91253.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVXIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91488.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIZDNSE-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR20862.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTRDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY + +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYGEGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77329.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQI-SKLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76703.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQXEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKXKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKIVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10535.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +GR + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIATDIQ---TKELQKRIIQIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+++D I +VPRR + + + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRRAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81439.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16786.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAFFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK+RG +G + E I L+ ++ + K+ +YY+D +D WKGP Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASDLQTKELQKQV-SKIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDHSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77608.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:171/282(60%), Gaps:6/282(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + G+P NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGVPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ---KLMMQWLYYKDQKDKKWKGP 239 NFK++G +G + E + + +Q SA+ + K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDLQT--SALQKQIIKIQNFRVYYRDSRDPIWKGP 238 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 239 AKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84841.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCHPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29228.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIXNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AYN62753.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVTTVHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87913.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25585.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGITQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKXLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96760.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29218.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76579.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49718.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIHNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17810.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + G+P NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGVPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91261.1 Length: 278 Range 1: 1 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06703.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TD G N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDTGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+ K + I +VPRR + + + Sbjct 337 LLWKGEGAVIXKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03330.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +G + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGGAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 157 WQMDCTHPEGKIIIVAVHVASGFIEAEVIPQKTGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKSFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16682.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDLQTKELQKQIT-KIQTFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44518.2 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49665.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSEIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87844.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHXNWRAMASDFNLPPVVAKEIVXSCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01969.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDLQTKELQKQITKIQKFRVYYRDNRDPPWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29138.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + G K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSXXXKAACWWAGXKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16960.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVIAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84520.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKHISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QBK58166.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:170/282(60%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82077.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82804.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHXNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIXAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVXAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42060.1 Length: 293 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:160/264(60%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEKFH + + L +F +P++VA +I C C+ +GE V GQ+ G Sbjct 1 FLEKIEPAQEEHEKFHXNIRELSHKFGIPKLVARQIVNSCAQCQQKGEAVHGQVNAEIGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IPQET T LL+L +T L TDNGPN Sbjct 61 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N LK I + + +++ + +A Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNXHLKNQISRIREQAETVETVVLMAA 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+ +G M P E I + + + A K +Y+++ +D+ WKGP Sbjct 181 HCMNFKRWEEIGDMTPAERLINMITTEQEIQFLQAKNLKFQKFQVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I +VPRR Sbjct 241 LLWKGDGAVIVKVGAD-IKIVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91521.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21070.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDC GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCARLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22207.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAREEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++I QET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVILQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17622.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17897.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25547.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82773.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10488.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:167/270(61%), Gaps:8/270(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + I QK ++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQ---TKILQKQIINIQNFRVYYRDNRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 P ++ + G+G+V+++D I +VPRR + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81769.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84417.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28951.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVLPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29300.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16151.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++I ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIAAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LXWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76221.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGXYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIXXYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52272.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKRIIQIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+++D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10450.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18128.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIS-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84654.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTNVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79069.1 Length: 283 Range 1: 9 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:103/271(38%), Positives:167/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 9 FLDGIDKAQEDHEKYHNNWRAMASEFNLPPVVAKEIVASCSKCQLKGEAIHGQVDCSPGI 68 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 69 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 128 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 129 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 188 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 189 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 248 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 249 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84260.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81259.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMVSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91553.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+ IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEXIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05261.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQEAGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05115.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG + Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAD 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + F + +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UEC94312.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVKAIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60871.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16878.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18261.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44543.2 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17362.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK +G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16639.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81967.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16492.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46893.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPVVAKEIVASCNKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D +A Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIAADIQTRELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17905.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18004.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84747.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17300.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25556.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76370.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIIAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKVQNFGVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28210.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96682.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87904.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11369.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQISKVQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17778.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHXNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60859.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKXITKXQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89926.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYLLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK GIP NPQS+ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQXFGIPYNPQSRGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61152.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81821.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSPGERIIDIIASDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16812.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAIQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17700.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16566.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96623.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANXFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ADF42967.1 Length: 293 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++RIE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FIERIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNSCAQCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH G++IIVAVHV SGF+ A++IPQET T LL+L +T L TDN N Sbjct 61 WQMDCTHLXGRVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNXAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++ I+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVXIEQSFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQTKNSKLKNFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G G+V++K I ++PRR Sbjct 241 LLWKGDGAVIVKVGTD-IKVIPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AWT86328.1 Length: 274 Range 1: 1 to 267 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/268(40%), Positives:164/268(61%), Gaps:2/268(0%) Query 2 SWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPG 61 S++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG Sbjct 1 SFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPG 60 Query 62 IWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGP 121 IWQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG Sbjct 61 IWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGS 120 Query 122 NFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALA 181 NF + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A Sbjct 121 NFISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMA 180 Query 182 LHCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPM 240 + NFK++G +G + E + + IQ K+ +YY+D +D WKGP Sbjct 181 VFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPA 240 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 ++ + G+G+V+++D I +VPRR ++ Sbjct 241 KLLWKGEGAVVIQDNSD-IKVVPRRKVK 267 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05813.1 Length: 299 Range 1: 12 to 277 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VA+HV SG++ A++IP ET T LL+L V + TDNG N Sbjct 72 WQLDCTHLEGKIILVAIHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVQAIHTDNGSN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 132 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 192 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++ E I +VPRR + Sbjct 252 LLWKGEGAVVIQ-ENSDIKVVPRRKAK 277 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05076.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + Q+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHEQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKAQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46357.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNIPPVVAKEIVAMCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78941.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQIIKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81597.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16673.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAS68573.1 Length: 288 Range 1: 1 to 263 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/268(41%), Positives:164/268(61%), Gaps:10/268(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDKAQEDHEKYHSNWRALASDFGLPPVVAKEIIASCPKCHIKGEAMHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP ET T LL+L + + TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPIKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSTAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKQLKSIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +G E I Q ++ +Q I QK +YY+D +D WK Sbjct 181 FVHNFKRKGGIGGCTAGERLIDILASQLQTTELQKQILKI-QKFR---VYYRDSRDPIWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 GP ++ + G+G+V+++D+ I +VPRR Sbjct 237 GPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81801.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17221.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDXCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNXLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17827.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMADEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92694.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87725.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKRIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17009.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16494.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/283(38%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E + + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16292.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGCN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIKQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01554.1 Length: 304 Range 1: 17 to 295 Score:201 bits(512), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 17 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 255 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 256 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ABO61054.1 Length: 1013 Range 1: 721 to 985 Score:214 bits(546), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:167/271(61%), Gaps:11/271(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ IE A +H+K+HS+ +YLR ++N+P ++A+EI +C C+ GE GQ+ G+ Sbjct 721 FMENIEPAIEDHDKYHSNWKYLRDKYNIPTLLAKEIVNRCSACQTHGEPKHGQVNADIGV 780 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKII+VAVHV SGF+WA+II QE T LL L +T++ TDNG N Sbjct 781 WQMDCTHLEGKIILVAVHVASGFIWARIISQENGRLTALELLNLAATWPITQIHTDNGTN 840 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +++ + + + GI+H G+P NPQSQ +VENAN LK I K E L+ A+A A+ Sbjct 841 FTSKEFQAVAWWAGIEHSTGVPYNPQSQGVVENANKQLKETINKVREEVQYLETAVAQAV 900 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 LN K++G +G M P E LY + E+ +IQ+ K +YY+ + W+ Sbjct 901 FILNNKRKGGIGDMTPTERLVNMLYTEIETQQIQN------TKFSKFRVYYRRGANPSWQ 954 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 GP ++ + G+G++++K ++ I VPRR + Sbjct 955 GPAQLLWKGEGAIVIKTDQGEIITVPRRKAK 985 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05981.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGVPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDSTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + GI+ G+P NPQSQ +VE N+ L+ I + + S++ + +A+ Sbjct 217 FTSQEVKMAAWWAGIEQTFGVPYNPQSQGVVEAMNHHLETQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84629.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17103.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+++++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGALVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFU91961.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76725.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVAXCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIASDIQTKELQKQVTKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+ +++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAXVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82409.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELXKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRBYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76478.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16759.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQNQITKLSKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61058.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHDKYHSNWKAMASDFNLPPVVAKEIVAXCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V++KD I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70841.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17423.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76156.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDLQTXALQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60338.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20992.1 Length: 414 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AQX39411.1 Length: 414 Range 1: 127 to 405 Score:204 bits(520), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 127 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDYSPGI 186 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 187 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 246 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 247 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 306 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 307 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 366 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 367 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 405 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71948.1 Length: 286 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYXDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16067.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVANCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17537.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16399.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHVEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96594.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+++P ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVVPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47033.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47112.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18370.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81833.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81607.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N+ LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNHELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36698.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76329.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVETIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77189.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + G+G+V+++D I +VPRR + Sbjct 241 XLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81566.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85438.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMVSDFNIPAVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D W+GP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIXKVQNFRVYYRDSRDPHWQGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84317.1 Length: 282 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + ++FN P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWXAMASDFNJPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21847.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + A++IPQE T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGSVEAEVIPQEAGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82779.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLXGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00317.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:163/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR + + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17845.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASEFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ +K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIKKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+ +D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVXQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60833.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77537.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQVKGEAIHGQVDXSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQDTAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+ G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 XIHNFKRXGGIGGYSAGERIVDMIATDIQTXELQKQITKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + G++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKXLRBYGKQMAGBD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16624.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17544.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84898.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVNCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17237.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UDP23854.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPTETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTSVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18138.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/288(37%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDXIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82709.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18312.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRXMASXFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKXKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82811.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVSSGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52174.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFQVYYRDSRDPIWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D + I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28383.1 Length: 299 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++ P+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVTPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69015.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82787.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84348.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16859.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10662.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81771.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17143.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46407.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G +IIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGNVIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N+ LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNSELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIRNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+L+D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVLQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25506.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52156.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYXILKLAGRWPVKVIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESXNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKXRGGIGGYSAGERIIDIIATDIQTKELQNQILKIXXFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82782.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16338.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52048.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/272(40%), Positives:167/272(61%), Gaps:4/272(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKVLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ--WLYYKDQKDKKWKGPM 240 NFK++G +G + E I + IQ Q L +Q +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTK-ELQNQILKIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 ++ + G+G+V+++D I +VPRR ++ + + Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIXD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76229.1 Length: 287 Range 1: 1 to 278 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG NF Sbjct 61 QLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 ISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRV 242 NFK++G +G + E I + IQ K+ +YY+D +D WKGP ++ Sbjct 181 IHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKL 240 Query 243 EYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05386.1 Length: 380 Range 1: 97 to 366 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+ S+ + L ++ +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYDSNVKELVFKYGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIGAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P PQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYYPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LSWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22067.1 Length: 380 Range 1: 97 to 359 Score:204 bits(518), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HE++HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEEYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYF-SAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + KL +YY++ +D+ KGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKLKNFRVYYREGRDQLRKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18096.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIASDIQTKELQKHVTKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF28995.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVTVIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46325.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29102.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76429.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQHFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81665.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82210.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQXEHERYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ---------KLMMQWLYYKDQKD 233 NFK++G +G + E RI D + Q KL +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDJXATDXQTKELQKQITKLQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84958.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASXIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18099.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQNQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76288.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH K+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLENKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESXNNELKKIINQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDJQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22077.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVQAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36723.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSEIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81796.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADK35709.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96569.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46847.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCEKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76348.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTRELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: AAK01033.1 Length: 990 Range 1: 694 to 960 Score:214 bits(545), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/268(40%), Positives:173/268(64%), Gaps:3/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 W+D+IE AE +H+KFHS+ QYL+ +F LP +VA+EI +C C+ +G+ V GQL G+ Sbjct 694 WIDKIEAAEEDHQKFHSNVQYLKEQFGLPTVVAKEIWERCSECQNKGQAVHGQLDYSYGL 753 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV + F WA I+ +ET + T +AL++L V ++ TDNGPN Sbjct 754 WQLDCTHEEGKVILVAVHVCTLFCWATILKRETGEETGRALIKLASQWEVRQVHTDNGPN 813 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q + + ++GI H G P NPQSQ +VE N +K I+K + +L++ +A+A+ Sbjct 814 FVSQHFKAAVWWLGIAHTTGHPYNPQSQGVVEQRNKDVKRKIKKMKDQAETLESKVAMAV 873 Query 183 HCLNFKQRGRLGRMAPYELYIQQE--SLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 + LNFK++G LG +P+E +++ L Q+ QK Y+K+ +W+GP Sbjct 874 YALNFKRKGGLGGKSPWERQVERAIIELDTQNLTKLQNQKFKNFKAYWKEHTG-EWQGPG 932 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V++++ + +F+ PRR ++ Sbjct 933 ELVWKGEGAVVIRNSQGTLFVKPRRKVK 960 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82426.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82567.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82583.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVATIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKHIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84620.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMAGDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82369.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17071.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85344.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++F +P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFGIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIXQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERLIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAX 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82464.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPXVAKEIVASCDRCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82311.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/288(37%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLBGIDKAQEEHEKYHSNWRAMXSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQXTAYFJLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82599.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82921.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17904.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDMIASDIQTKELQKHITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81336.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16514.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60723.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25046.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAIVSDFNIPPVVAKEIIASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQJDCTHLEGKIIIVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77462.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPAVVAKEIIACCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKILRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08813.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08814.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFK08815.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMXSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+ +++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAXVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QTF48861.1 Length: 266 Range 1: 1 to 266 Score:200 bits(508), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/278(38%), Positives:166/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIXQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGXYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28333.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28337.1 Length: 299 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQ+T T LL+L +T L TDNG N Sbjct 61 WQTDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21108.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLKKIEPAQKEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELRT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77158.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82018.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQDEHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25301.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+V VHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVGVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ASM56715.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXMKAACWWAGIKQEFGIPYNPQSQGVVESMNXELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51930.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVQVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46629.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+HS+ + + EFNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHEKYHSNWRAMANEFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYFRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKXKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82942.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHXEGKXILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16173.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + G P NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGTPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87930.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYJEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76426.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QHQ96638.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASEFNLPPVVAKEIIASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77441.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D K I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81989.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMARDFNLPPVVAKEIVASCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ L +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITNLQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81415.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59975.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +V + N LK I + + L A+ +A+ Sbjct 121 FTSTTMKAACWWAGIKQEFGIPYNPQSQGVVXSXNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGXIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70317.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVAICDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +Y++D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKLQNFRVYFRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01631.1 Length: 304 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01649.1 Length: 304 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QDS01674.1 Length: 304 Range 1: 17 to 295 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 17 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 76 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 77 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 136 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 137 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 196 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 197 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 256 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 257 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 295 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82623.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05636.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + Q+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHRQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIV VHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQIDCTHLEGKIIIVTVHVASGFIEAKVIPQETGRQTALFLLKLASGWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71694.1 Length: 281 Range 1: 1 to 275 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/276(39%), Positives:165/276(59%), Gaps:2/276(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGIWQ+D Sbjct 1 IDKAQEDHEKYHSNWRAMVSDFNLPPVVAKEIVANCDKCQLKGEAIHGQVDCSPGIWQLD 60 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKII+VAVHV SG++ A++IP E T LL+L VT + TDNGPNF + Sbjct 61 CTHLEGKIILVAVHVASGYIEAEVIPAENGQETAYFLLKLAGRWPVTTIHTDNGPNFTST 120 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A +A+ N Sbjct 121 TVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEXLKTAXXMAVFIHN 180 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +G + E I + IQ K+ +YY+D +D WKGP ++ + Sbjct 181 FKRKGGIGGYSAGERIIDIIATEIQTRELQKQITKVQNFRVYYRDSRDPLWKGPAKLLWK 240 Query 246 GQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 G+G+V+++D I +VPRR + + + GD+ Sbjct 241 GEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDB 275 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76166.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/280(36%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIXQVRDQAEHJXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + Q K+ +YY+D +D W+GP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDJQTXXLQNQITKIQKFRVYYRDSRDPLWRGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84370.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82027.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSSKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00332.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60813.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81649.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84436.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHNNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPSETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK+ I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKIIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16965.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46265.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46611.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:166/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKELQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28828.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/288(37%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIXKAQXDHEKYHXNWRAMASDFNLPPVVAKEIXASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIASDJQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96806.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82744.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17942.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25423.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81487.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NXDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18180.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRSMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85351.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16188.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21110.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLKKIEPAQKEHEKYHSNVKKLVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELRT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T+NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTNNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQINRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84352.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16549.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDNREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI86620.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47154.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D KD WKGP Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDNKDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18074.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ I + + +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTNDLHIQISEIQNFRVYYRDSRDPIWKGPAH 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16166.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FN+P +VA+EI C C+IRGE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQIRGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQVTKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGRQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18084.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17673.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNIPPVVAKEIXASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHVEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81270.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91448.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28349.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28381.1 Length: 299 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28402.1 Length: 299 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:102/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P PQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCTPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21121.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+V + I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVTKRIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+ NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVLYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84623.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QRL06170.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ RPGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCRPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + +KH+ GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSAAVRAACWWADVKHEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81893.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:172/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVACCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW---------LYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDIQTKELQHNITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77845.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAX 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16423.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/278(38%), Positives:166/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89539.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++I ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIQAETGQETAYFILKLAGRWPVKRIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89491.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61246.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMISTDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29258.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKXD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABL66997.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPAVVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22159.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44600.2 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I +A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76593.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16575.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84609.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82297.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKQLQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60881.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTNQLQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76356.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMVSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF28962.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNIPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17020.1 Length: 291 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKXITKXQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22247.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMD TH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDRTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAKNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNVITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADI87238.1 Length: 292 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + G++ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQTVKAACWWAGVQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABD33636.1 Length: 295 Range 1: 8 to 277 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/282(39%), Positives:167/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP VA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPXVAKEIVACCDKCQLKGEAIHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 68 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKTIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 188 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 236 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 237 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 277 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96705.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82579.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76193.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQISKIQNFRVYFRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACL35636.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69024.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKVQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18054.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D ++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGJDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIASDLQTKELQKQIT-KIQTFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13683.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACF37519.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/278(38%), Positives:166/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQXTAYFJLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81310.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIISQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGDRIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16737.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29081.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:165/275(60%), Gaps:18/275(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKHITNIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 WKGP ++ + G+G+V+++D I +VPRR + Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSX-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81807.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAHDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP+ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPEETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96678.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24679.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28887.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDXIDKAQEXHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEX91123.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13658.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82631.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/268(39%), Positives:167/268(62%), Gaps:4/268(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVATIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDLQTKELQKHIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 ++ + G+G+V+++D I +VPRR + Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16099.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNXLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIXATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16090.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16112.1 Length: 282 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81281.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21204.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++ C C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQTVDTCDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFVEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQEVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VP R + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPGRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17181.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLBGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYXAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25190.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWXAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++ P ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVXPAETGQETAYFLLKLAGRWPVTXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKRITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87746.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60197.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTRELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81335.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25196.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17854.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82778.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17325.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDXRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17293.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHXNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77120.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:161/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIJVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIVDXIATDIQTKELQKQITKIQTFQVYYRDXRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRRAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ANT86121.1 Length: 657 Range 1: 365 to 634 Score:210 bits(535), Expect:3e-59, Method:Compositional matrix adjust., Identities:109/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F+LPR+VA++I C C +GE + GQ+ G Sbjct 365 FLEKIEPAQEEHEKYHSNVKELVFKFSLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 424 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 425 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 484 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 485 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 544 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 545 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 604 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK K I +VPRR + + + Sbjct 605 LLWKGEGAVILKVGTK-IKVVPRRKAKIIKD 634 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22186.1 Length: 380 Range 1: 97 to 358 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:105/263(40%), Positives:162/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAI 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG + M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIRDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V+LK + I +VPR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPR 358 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05111.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKI IVAVHV SGF+ A++IPQET T L+L +T L TDNG N Sbjct 157 WQMDCTHLEGKITIVAVHVASGFIEAEVIPQETGRQTALFPLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+ +LK + I +VPRR + + + Sbjct 337 LLWKGEGAAILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05808.1 Length: 299 Range 1: 12 to 290 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 72 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 132 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 192 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I ++PRR + + + GD+ Sbjct 252 LLWKGEGAVVIQDNSD-IKVIPRRKAKIIRDYGKQMAGDD 290 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28455.1 Length: 299 Range 1: 1 to 263 Score:201 bits(511), Expect:3e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C + +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKRQQKGEAIYGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AOW43031.1 Length: 348 Range 1: 84 to 346 Score:202 bits(515), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/264(41%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 84 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 143 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 144 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 203 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 204 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 263 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 264 FIHNFKRRGGIGGYSPGERMIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 323 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 324 LLWKGEGAVVIQDNSD-IKVVPRR 346 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82459.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIXDXIATDIQTKELQXXITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61108.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAFFILKLAGRWPVXTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82109.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++NLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDYNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIXGQXRDQAEXLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61456.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQJKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQHFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76751.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRAMVSDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDXIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82063.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UWJ07115.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPTETGQETAYFILKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTSVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82357.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:111/288(39%), Positives:167/288(57%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + +EFNLP VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWXAMASEFNLPPXVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQXTKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16512.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16128.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37215.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21080.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 QMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 RQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQ Q +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQGQGVVEAINHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + YY++ +D+ W+GP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRAYYREGRDQLWRGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR R + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKARIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21135.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+ +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKSAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 LTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04284.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAV V SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVRVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + ++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANLIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITAEQEIQFQQSKNSKFKNFQVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68880.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16720.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77610.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ H+K+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQDEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47001.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61112.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61136.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76499.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82119.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44525.2 Length: 288 Range 1: 1 to 278 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/279(39%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76125.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28183.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17712.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89897.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89898.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89899.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89900.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89901.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ K GIP NPQS+ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQKFGIPYNPQSKGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28998.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82380.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGZRIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77813.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVNCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17012.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18049.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMXSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96547.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAAKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKXITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18342.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71179.1 Length: 274 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:161/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V TDNGPN Sbjct 61 WQLDCTHLEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTXHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04289.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQEGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHRHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + ++Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVHYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21023.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +PR+VA++I C C +GE GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHGNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEATHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T L +L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLPKLAGRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABI29843.1 Length: 311 Range 1: 24 to 289 Score:201 bits(512), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/278(39%), Positives:165/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 24 FLDGIEKAQEEHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 83 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V L TDNGPN Sbjct 84 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVLHTDNGPN 143 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 144 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLRTAVQMAV 203 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 204 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 252 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR + Sbjct 253 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 289 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84628.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17913.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVE02414.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:173/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE V GQ+ PGI Sbjct 1 FLEGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAVHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V ++ TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKKVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + I+ + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FTSNAVKAACWWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGEYSAGERIIDIIATDMQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNND-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25169.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25222.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEYLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82312.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D K I +VPRR + Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77705.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/281(37%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWXAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+++VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVVLVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABL66999.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82945.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37227.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIIDIIASDIQTKELQKQITNIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87709.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDJISTDIQTKELQBXITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85324.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQXTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL98957.1 Length: 288 Range 1: 1 to 263 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/275(39%), Positives:163/275(59%), Gaps:24/275(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 +++ I++A+ +HEK+HS + L ++F LP +VA+EI CP C I+GE + GQ+ P + Sbjct 1 FLEGIDQAQEDHEKYHSXWRALASDFGLPPVVAKEIIANCPKCHIKGEAIHGQVDCSPEV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GK+IIVAVHV SGF+ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQMDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + I H+ GIP NPQSQ +VE N LK I++ + L A+ +A+ Sbjct 121 FTSATMKAACWWANIXHEFGIPYNPQSQGVVEAMNKELKSIIEQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G E I Q++ L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRR 265 +D WKGP ++ + G+G+V+++D+ I +VPRR Sbjct 230 SRDPIWKGPAQLLWKGEGAVVIQDKGD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82688.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ P I Sbjct 1 FLDGIDKAQXDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEALXGQVDCSPEI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYTAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADB92589.1 Length: 270 Range 1: 1 to 266 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81258.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22252.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + G++ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTWDKCHQKGEAIHGRVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78954.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQVKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81658.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87861.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16523.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35901.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNALKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67479.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/274(39%), Positives:169/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+RG +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQ---TKELQKQIIKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77752.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTSVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERLIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFU91909.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76804.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16305.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QLC45480.1 Length: 288 Range 1: 1 to 278 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAXKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKLLQNQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17752.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++H + + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHCNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHEEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIRQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28114.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I ++ Q+ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIXTDIQTQELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70893.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70908.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84320.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82635.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYVEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + G+G+V+++D I +VPRR + Sbjct 241 XXWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42582.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/288(37%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPSETGQEAAYFVLKLAGRWPVNTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATDIQTKELQKQITNIQKFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADK35701.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP ++A+EI C C+I+GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVIAKEIVASCDKCQIKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81825.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82191.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82870.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37194.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVMPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16775.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQSQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84497.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKLSNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82926.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25165.1 Length: 288 Range 1: 1 to 278 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVAXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAX 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09159.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDQAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP +T T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIMVAVHVASGYIEAEVIPAQTGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + L A+ +A+ Sbjct 121 FXSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIXGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATNIQTNELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89519.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAMASDFNMPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16847.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84769.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87819.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIVDMIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76224.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEAHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP+ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPEETGQETAYFLLKLAGRWPVKTIHTDNGRN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAMKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81685.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84359.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + +K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWADVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSPGERIIDIIASDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNND-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29147.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79005.1 Length: 283 Range 1: 11 to 276 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 11 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 70 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 71 WQLDCTHXEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 130 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 131 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 190 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 191 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 250 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 251 LLWKGEGAVVIQDNSD-IKVVPRRKAK 276 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82648.1 Length: 275 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQJDCTHLEGKIIIVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEQLKTAVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APX42738.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + E GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIREYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28991.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSNXVKAACWWAGIXQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76839.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIAQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDQGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96591.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVAXCDKCQLKGEAIHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLXTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDG09275.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:165/280(58%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+ +GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQJKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAMVKAACWWAGXKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTRELQKQXXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28924.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQIXKJQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52071.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:168/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVXVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81899.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAC83506.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++G+ + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGQAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 W++DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WRLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP N QSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNLQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16366.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17857.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16876.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELHKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17495.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QGK89487.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVAXCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85514.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPSVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQXTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNXELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96781.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68911.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I ++I++ I K+ +YY+D +D WKGP Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQIKELQKQIT-KIEKFRVYYRDNRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85490.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82452.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFJLRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71863.1 Length: 286 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGMGGYSAGERIIDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AHI42080.1 Length: 293 Range 1: 1 to 263 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA +I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRXTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ G+P NPQSQ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIRDQANTVETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ KGP Sbjct 181 HCMNFKRRGGIGDMTPAERLINMITAEQEIQFLQAKNSKLKNFRVYFREGRDQYSKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + G G+V++K I ++PRR Sbjct 241 HLWKGDGAVIVKVGTD-IKVIPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91430.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D + I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91297.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+ VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKXAGRWPVTAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FVSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR05327.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++I A+ H +HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIGPAQEEHXXYHSNVKELVXKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKVVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52207.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/278(38%), Positives:166/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGXYSAGERIIDIIATDIQTKELQNQILKIQNFX-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84598.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17691.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76255.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:110/286(38%), Positives:170/286(59%), Gaps:14/286(4%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQIDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWL-------YYKDQKDKK 235 NFK++G +G + E I + IQ Q+L Q L YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQ------TQELQKQILKIQNFRVYYRDSRDPL 234 Query 236 WKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 235 WKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17186.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEADVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDXRDPJWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16192.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWXGXGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16662.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16954.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18047.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18305.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87924.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTQELQKQISKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52078.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/278(38%), Positives:167/278(60%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+++D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24961.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68902.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16211.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQADHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77482.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIIQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIKDNSE-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69007.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKNITKLHNFRVYYRDSRDPFWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85403.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16300.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18233.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81730.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81586.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNXPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84550.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQISKLQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18024.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84616.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17093.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERMIDMIATDIQTKEJQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77859.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82731.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28117.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRXMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76188.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQXTAYFJLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS69027.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG+L A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITNIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: AEI83204.1 Length: 293 Range 1: 1 to 263 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ +GE + GQ+ G+ Sbjct 1 FLEKIEPAQEEHEKYHSNVKELIHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ DCTH GKIIIVAVHV SGF+ A++IPQE+ T LL+L +T L TDNG N Sbjct 61 WQXDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLAXRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + ++GI+ IP NPQS+ +VE N+ LK I + + +++ + +A+ Sbjct 121 FTSQEVKMVAWWVGIEQSFSIPYNPQSRGVVEAMNHHLKNQISRIREQANTIETIVLMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E I + + + A KL +Y+++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+VL+K I ++PRR Sbjct 241 LLWKGEGAVLVKVGTD-IKIIPRR 263 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21892.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDACNKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SG + ++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGLIEVEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC++FK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMDFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81864.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81911.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16469.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96566.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +++NLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDYNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGXYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO51979.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V+ + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVSVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16514.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPIVAKEIVACCDKCQIKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84878.1 Length: 288 Range 1: 1 to 266 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46987.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQXFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNREPFWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96689.1 Length: 288 Range 1: 1 to 278 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDXCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXXVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17357.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A +IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEADVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70851.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH67495.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I EA+ +HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGINEAQEDHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATNIQTTELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16873.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46245.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVQAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77758.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQXKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79055.1 Length: 283 Range 1: 11 to 276 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 11 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 70 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 71 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 130 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 131 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 190 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 191 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK 250 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 251 LLWKGEGAVVIQDNSD-IKVVPRRKVK 276 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QGA79714.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAADFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIMVAVHVASGYIEAEVIPAETGQEAAYFLLKLAARWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK K GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQKFGIPRNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FXHNFKRKGGIGGYSPGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82049.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEO00343.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18207.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVXXCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85407.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UTH78940.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQVKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17806.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16753.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16307.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16967.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17529.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18176.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25226.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMVSEFNLPPVVAKEIVAXCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82742.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H + + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQAEHEKYHCNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70878.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25215.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77521.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXEFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D + I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSE-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79031.1 Length: 283 Range 1: 3 to 281 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 3 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 62 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 63 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 122 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 123 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 182 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G E RI D + Q +Q +YY+D +D Sbjct 183 FIHNFKRKGGIGEYTAGE--------RIVDIIATDIQTKELQKQITNIQKFRVYYRDSRD 234 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 235 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 281 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82611.1 Length: 275 Range 1: 1 to 266 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVATIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIXSDLQTKELQKQXSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AWT86395.1 Length: 277 Range 1: 6 to 271 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 6 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 65 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 66 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 125 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 126 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 185 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 186 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 245 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 246 LLWKGEGAVVIQDNSD-IKVVPRRKVK 271 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17213.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPXWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17069.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+H++ + + ++FN+P +VA+EI C C+ +GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQXKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTXELQKXITKJQXFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10460.1 Length: 288 Range 1: 1 to 270 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYYVLKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16181.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16685.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QDM36441.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ + +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKRITNIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16407.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V L TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTLHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01967.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDLQTKELQKQITKIQKFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84929.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIANCDKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76190.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76212.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTRELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16580.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKMIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59703.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59773.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGINQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMISTDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46685.1 Length: 288 Range 1: 1 to 279 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWKAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91351.1 Length: 278 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP ++A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAIASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ + ++ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITTIQKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AEW47829.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FXSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25191.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPXXAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTRIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQXRITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29063.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVAAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28147.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:173/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTVHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIS-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61276.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK+RG +G + E RI D + Q +Q +YY+D ++ Sbjct 181 FIHNFKRRGGIGGYSAGE--------RIXDIIATDIQTQELQKQISKIQNFRVYYRDNRE 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25105.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCBKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16508.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77493.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HE++HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQDDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21870.1 Length: 263 Range 1: 1 to 263 Score:199 bits(507), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAXEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIXKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D + I +VPRR Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20936.1 Length: 414 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20944.1 Length: 414 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20952.1 Length: 414 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20960.1 Length: 414 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO20968.1 Length: 414 Range 1: 127 to 405 Score:204 bits(519), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 127 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 186 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 187 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 246 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 247 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 306 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 307 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 366 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 367 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 405 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24825.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85008.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77615.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/282(38%), Positives:171/282(60%), Gaps:6/282(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQ---KLMMQWLYYKDQKDKKWKGP 239 NFK++G +G + E + + IQ A+ Q K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQT--KALQQHITKIQNFRVYYRDSRDPLWKGP 238 Query 240 MRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 239 AKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60645.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRTMXSDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIXDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16527.1 Length: 288 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/279(39%), Positives:166/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIEQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDNRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77749.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTSVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46829.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEQLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76379.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +Y++D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYFRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85056.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:171/291(58%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFVLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ + +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSTKIQXFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17386.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AWT86392.1 Length: 279 Range 1: 8 to 273 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 68 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 188 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 247 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 248 LLWKGEGAVVIQDNSD-IKVVPRRKVK 273 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16272.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16906.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH G+II+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGRIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17014.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76072.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGXKQEFGIPYNPQSQGVVESMNNELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU28838.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + + FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASXFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELY------------IQQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E +Q++ +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIXDIIAXDIQTKELQKQIXKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 SRDPLWKGPAKLLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17133.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84687.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + +Q K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDMQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85540.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE +HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEXYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18190.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYJEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus] Sequence ID: AEY77300.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/291(36%), Positives:175/291(60%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIIASCDKCQLKGEAMHGQVDSSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FSSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIKQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 230 SRDPVWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77643.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25065.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16345.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KMQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18046.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIXVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGDRIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18356.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDRCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37218.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWTGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96577.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79006.1 Length: 283 Range 1: 15 to 280 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:167/270(61%), Gaps:8/270(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 15 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 74 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 75 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 134 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 135 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 194 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 195 FIHNFKRKGGIGGYSAGERIIDIIATDIQ---TKELQKRIIQIQNFRVYYRDSRDPIWKG 251 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 P ++ + G+G+V+++D I +VPRR ++ Sbjct 252 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVK 280 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82615.1 Length: 275 Range 1: 1 to 266 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D + I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO21000.1 Length: 416 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO21008.1 Length: 416 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO21016.1 Length: 416 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO21032.1 Length: 416 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: APO21040.1 Length: 416 Range 1: 129 to 407 Score:204 bits(520), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 129 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 188 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 189 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 248 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 249 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 308 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 309 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 368 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 369 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 407 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR03328.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:110/265(42%), Positives:164/265(61%), Gaps:4/265(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKRHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S+ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIGTIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESL--RIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 HC+NFK+RG +G M P E + + IQ S P K +YY++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNP-KFKNFRVYYREGRDQLWKGPG 335 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 336 ELLWKGEGAVILKVGTE-IKVVPRR 359 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28311.1 Length: 299 Range 1: 1 to 263 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:103/264(39%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQ T T LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQGTGRQTALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ VE ++ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPYNPQSQGAVEAMHHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V++K + I +VPRR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AHK05797.1 Length: 299 Range 1: 12 to 290 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 12 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 71 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 72 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 131 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 132 FTSTVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 191 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 192 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 251 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 252 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 290 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71822.1 Length: 269 Range 1: 1 to 259 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/260(40%), Positives:160/260(61%), Gaps:2/260(0%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGIWQ+D Sbjct 1 IDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLD 60 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG NF + Sbjct 61 CTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTST 120 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ N Sbjct 121 MVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHN 180 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMRVEYW 245 FK++G +GR + E I + IQ K+ +YY+D +D WKGP ++ + Sbjct 181 FKRKGGIGRYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWK 240 Query 246 GQGSVLLKDEEKGIFLVPRR 265 G+G+V+++D I +VPRR Sbjct 241 GEGAVVIQDNSD-IKVVPRR 259 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAG35641.1 Length: 295 Range 1: 8 to 286 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 68 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 188 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 247 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 248 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 286 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70832.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNMVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81788.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + + I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGQRIIDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQVAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46907.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AEA11381.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:168/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPSVVAKEIVASCBKCQLKGEAMHGQVDCSPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYTAGE--------RIXDIIATDIQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIJRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92753.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + +FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMANDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG+L A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17966.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18077.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRSMASDFNLPPVVAKEIVASCDKCQVKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76644.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKTVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIXTDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18115.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17505.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29323.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17284.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP + A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNXRAMASDFNLPPVXAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46983.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UWJ07095.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMANDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AXY79000.1 Length: 283 Range 1: 11 to 276 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 11 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 70 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 71 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 130 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 131 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 190 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 191 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQIIKIQNFRVYYRDSRDPIWKGPAK 250 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 251 LLWKGEGAVVIQDNSD-IKVVPRRKVK 276 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QTF48851.1 Length: 266 Range 1: 1 to 266 Score:199 bits(507), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVQVIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIASXIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+L+D I +VPRR ++ Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR21026.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++ +IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ Sbjct 97 FLKKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELET 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQM+CTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMNCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I K + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDKIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCVNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+L+ + I +VPRR Sbjct 337 LLWKGEGAVILRVGTE-IKVVPRR 359 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QMS46583.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCBKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+L+D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81659.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHNNWRAMVSDFNIPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77087.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIXQVRXQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDXXX-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16393.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMVSDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29227.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIATXJQTXXLQNQITKIQKFRVYYRDNRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+L+D I +VPRR ++ + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25522.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGXGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29246.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29407.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:110/288(38%), Positives:169/288(58%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDXAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIVDIIASDJQTKELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84817.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIIDMIATDIQTTELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16210.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16770.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84896.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDLIATDIQTQELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16107.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHXEGKTILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17393.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84603.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHERYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82911.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QIQ18422.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAARWPVRVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85449.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVACCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18079.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABL67001.1 Length: 288 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABL67002.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77616.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29275.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A+++P ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVLPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85061.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIXGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPHWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSX-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60300.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHFKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDNREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82797.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/281(37%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIIVVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK + + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I +R ++ K+ +YY+D +D WKGP Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIRTKE-LQKQSSKIQHFRVYYRDNRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91294.1 Length: 278 Range 1: 1 to 278 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:173/280(61%), Gaps:4/280(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 ++ + G+G+V+++D + I +VPRR ++ + + GD Sbjct 240 KLLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 2] Sequence ID: ACP28400.1 Length: 299 Range 1: 1 to 262 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:102/263(39%), Positives:162/263(61%), Gaps:2/263(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ +GE + GQ+ G Sbjct 1 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNAELGT 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IP+ET LL+L +T L TDNG N Sbjct 61 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLLKLASRWPITHLHTDNGAN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + ++GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A Sbjct 121 FTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQ-DYFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + + A K +YY++ +D+ WKGP Sbjct 181 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNLKFKTFQVYYREGRDQLWKGPGE 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPR 264 + + G+G+V++K + I +VPR Sbjct 241 LLWKGEGAVIIKVGTE-IKVVPR 262 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AWT86394.1 Length: 273 Range 1: 2 to 267 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 2 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 61 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 62 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 121 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 122 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 181 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 182 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 241 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 242 LLWKGEGAVVIQDNSD-IKVVPRRKVK 267 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: WDY34982.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/274(39%), Positives:168/274(61%), Gaps:8/274(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK+ G +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 181 FIHNFKRXGGIGGYSAGERIIDIIATDIQ---TKELQKRIIQIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 P ++ + G+G+V+++D I +VPRR ++ + + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92707.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIVVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACS70882.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDQGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16266.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18181.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71214.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E + + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRRGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D K I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQD-NKDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10345.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17527.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47144.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PG Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60697.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQIDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+++D I +VPRR + + + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76616.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVAHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18343.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESXNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76423.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++I ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIXAETGQETAYFILKLAARWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+RG +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77263.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D ++ WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: UYL89903.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ K GIP NPQS+ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIQQKFGIPYNPQSKGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76417.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:170/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIIASCDKCQLKGEAMHGQVDCSPGL 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G +P E RI D + Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSPGE--------RIIDIIATDXQTXELQKQITKIQNFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 233 PLWKGPAKLLWKGEGAVVIQDSGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25148.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSSTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21719.1 Length: 263 Range 1: 1 to 263 Score:199 bits(507), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:163/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMVGEFNIPPVVAKEIIACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADA71869.1 Length: 286 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D +++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGLDKAQDDHEKYHSNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + + + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFS68999.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L AL +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52161.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/283(39%), Positives:172/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQDEHEKYHSNWRAMASEFNLPPIVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK +++ +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQ---TKELQKQILKIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16668.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQADHEKYHNNWRAMADEFNLPPVVAKEIVACCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AVI10504.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/282(38%), Positives:169/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGITQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13646.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACI62475.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRVVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKVKIIKDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AOA49644.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVTTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +Y++D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYFRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96528.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18026.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYVEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16904.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18293.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACY70368.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60583.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHERYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D KD WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATNIQTTELQKQITKIQNFRVYYRDNKDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77596.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWKAMASDFNLPPIVAKEIVANCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVQTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84380.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVXTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85049.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAFFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G +P E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSPGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82909.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKKKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKIVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AWT86393.1 Length: 279 Range 1: 8 to 273 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 8 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 67 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 68 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 127 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 128 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 187 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 188 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 247 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR ++ Sbjct 248 LLWKGEGAVVIQDNSD-IKVVPRRKVK 273 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR22274.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/271(38%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P +PQSQ +VE N+ LK I + + S++ + + + Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYSPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMTV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + +YY++ + + WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRGQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84674.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAMCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85234.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQIXKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17850.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAIVSDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPTETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FISTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKISKFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82283.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87772.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMSSDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I KL +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDLQTKELQKQIT-KLQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82858.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37200.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16538.1 Length: 288 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQVSKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR + + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGD 278 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX59659.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFLLKLAGRWPVKVVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87891.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQXEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQIDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82137.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAGEFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17455.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82873.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37176.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84820.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKLQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77376.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +GR + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGRYSAGERIIDIIASDLQTKELQKQI-XKIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 240 XLLWKGEGAVVIQDQGD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY47045.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKI++VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIVLVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGGN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28125.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYTAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76367.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIXTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNALKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + S IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGDYCAGERIVDIISTDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIKDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52137.1 Length: 288 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/278(39%), Positives:165/278(59%), Gaps:24/278(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HE++HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIEKAQEEHERYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCNPGV 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK+RG +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRRGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 +D WKGP ++ + G+G+V+L+D I +VPRR ++ Sbjct 230 SRDPIWKGPAKLLWKGEGAVVLQDNSD-IKVVPRRKVK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UHM21898.1 Length: 263 Range 1: 1 to 263 Score:199 bits(507), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/264(39%), Positives:165/264(62%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +H+K+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHDKYHSNWRAMAADFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 + ++ ++ + GIKH+ GIP NPQSQ +VE+ +N LK I + + L A+ +A+ Sbjct 121 YISKTVKAACWWAGIKHEFGIPYNPQSQGVVESMHNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIHRFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+++D I +VPRR Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRR 263 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84259.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + + FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASXFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84309.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25064.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82376.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYCAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84751.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPAVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKNITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UEC94280.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCNPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASEIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35920.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AFM82885.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37144.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AGE13672.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:103/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18177.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR04282.1 Length: 380 Range 1: 97 to 359 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/264(40%), Positives:162/264(61%), Gaps:2/264(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 W MDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L TDNG N Sbjct 157 WLMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+R +G M P E + + + F + +YY++ +D+ WKGP Sbjct 277 HCMNFKRREGVGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRR 265 + + G+G+V+LK + I +VPRR Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRR 359 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ACR06023.1 Length: 380 Range 1: 97 to 366 Score:203 bits(517), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/271(39%), Positives:165/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IE A+ HEK+HS+ + L +F +PR+VA++I C C +GE + GQ+ G Sbjct 97 FLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 156 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIIIVAVHV SGF+ A++IPQET T LL+L +T L T NG N Sbjct 157 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTGNGAN 216 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + GI+ G+P NPQSQ +VE N+ LK I + + S++ + +A+ Sbjct 217 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 276 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW-LYYKDQKDKKWKGPMR 241 HC+NFK+RG +G M P E + + + F + + Y++ +D+ WKGP Sbjct 277 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVCYREGRDQLWKGPGE 336 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+LK + I +VPRR + + + Sbjct 337 LLWKGEGAVILKVGTE-IKVVPRRKAKIIKD 366 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91369.1 Length: 278 Range 1: 1 to 278 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/279(38%), Positives:168/279(60%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96629.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96805.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17208.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ HEK+H++ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDRAQEEHEKYHNNWRAMASDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25557.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKI++VAVHV SG+L A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIVLVAVHVASGYLXAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABO92740.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G LG + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGLGGYSAGERIVDIIATDIQTKELQKQITKMQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVVQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84496.1 Length: 288 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA81527.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AAL01915.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP +T T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAKTGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77719.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ +HEK+H + + + ++FNLP +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIEKAQEDHEKYHCNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16346.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/291(36%), Positives:173/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKXIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + + I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGQRIIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25163.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAADFNLPPIIAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVXTXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76222.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FXSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKALQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QWY46895.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP I+A+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82071.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYE--LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDLQTRELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77357.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +GR + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGRYSAGERIVDIIASDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QPZ86434.1 Length: 287 Range 1: 1 to 278 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/290(37%), Positives:173/290(59%), Gaps:24/290(8%) Query 4 VDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIW 63 +D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGIW Sbjct 1 LDGIDKAQEDHEKYHSNWKAMASDFNLPPVVAKEIVASCDKCQLKGESMHGQVDCSPGIW 60 Query 64 QMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNF 123 Q+DCTH GK+I+VAVHV SG+L A++IP ET T +L+L V + TDNGPNF Sbjct 61 QLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAFFILKLAGRWPVKTIHTDNGPNF 120 Query 124 KNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALH 183 + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 TSATVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVF 180 Query 184 CLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKDQ 231 NFK++G +G + E I Q++ ++IQ++ +YY+D Sbjct 181 IHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFR-----------VYYRDS 229 Query 232 KDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 230 RDPVWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 278 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACG71238.1 Length: 287 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI +C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVARCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVATIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALF12163.1 Length: 297 Range 1: 4 to 262 Score:201 bits(510), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/263(41%), Positives:160/263(60%), Gaps:8/263(3%) Query 7 IEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGIWQMD 66 I++A+ +HEK+HS+ + L ++F +P +VA+EI CP C I+GE + GQ+ P +WQMD Sbjct 4 IDQAQEDHEKYHSNWRALASDFGIPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEVWQMD 63 Query 67 CTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPNFKNQ 126 CTH GK IIVAVHV SGF+ A++IP ET T LL+L + L TDNGPNF + Sbjct 64 CTHLEGKXIIVAVHVASGFIEAEVIPXETGQETAYFLLKLASRWPIKVLHTDNGPNFTST 123 Query 127 KMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALALHCLN 186 M+ + I H+ GIP NPQSQ +VE N LK IQ+ + L A+ +A+ N Sbjct 124 TMKAACWWTNIXHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAVFVHN 183 Query 187 FKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKGPMRV 242 FK++G +G E I + IQ + QK +++ +YY+D +D WKGP ++ Sbjct 184 FKRKGGIGGCTAGERLIDILASHIQ---TTELQKQILKIQKFRVYYRDSRDPIWKGPAQL 240 Query 243 EYWGQGSVLLKDEEKGIFLVPRR 265 + G+G+V+++D+ I +VPRR Sbjct 241 LWKGEGAVVIQDKGD-IKVVPRR 262 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AKN91392.1 Length: 278 Range 1: 1 to 278 Score:200 bits(508), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/279(38%), Positives:167/279(59%), Gaps:2/279(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSXVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDXIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGD 280 + + G+G+V+++D I +VPRR ++ + + GD Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGD 278 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ALS54601.1 Length: 1023 Range 1: 733 to 998 Score:214 bits(545), Expect:4e-59, Method:Compositional matrix adjust., Identities:113/271(42%), Positives:173/271(63%), Gaps:10/271(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IEEA+ HE++H++ + + F +P++VA+EI +CP C+IRGE V GQ+ PG+ Sbjct 733 FLEKIEEAQEEHERYHNNWKEMADTFGIPQVVAKEIVAQCPKCQIRGEPVHGQVDASPGV 792 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A+IIP+ET T K LL+L+ +T+L TDNGPN Sbjct 793 WQMDCTHLEGKIIITAVHVASGFIEAEIIPRETGKETAKFLLKLLSRWPITKLHTDNGPN 852 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+H GIP NPQSQ VE+ N LK I K + L+ A+ +A Sbjct 853 FVSQEVQAMCWWGKIEHTTGIPYNPQSQGSVESMNRQLKDIIGKIREDCQYLETAVLMAC 912 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 H NFK++G +G M + L Q E+ +Q QK + +YY++ +D WK Sbjct 913 HIHNFKRKGGIGDMTSADRLLNILTTQLETKTLQQKI----QKFLNFKVYYREGRDPVWK 968 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 GP + + G+G+V++K E+ + ++PRR + Sbjct 969 GPAVLIWKGEGAVVIK-EQGELKVIPRRKAK 998 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ALS54609.1 Length: 1023 Range 1: 733 to 998 Score:214 bits(545), Expect:4e-59, Method:Compositional matrix adjust., Identities:112/271(41%), Positives:174/271(64%), Gaps:10/271(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IEEA+ HE++H++ + + F +P++VA+EI +CP C++RGE V GQ+ PG+ Sbjct 733 FLEKIEEAQEEHERYHNNWKEMADTFGIPQVVAKEIVAQCPKCQVRGEPVHGQVDASPGV 792 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A+IIP+ET T K LL+++ +T+L TDNGPN Sbjct 793 WQMDCTHLEGKIIITAVHVASGFIEAEIIPRETGKETAKFLLKILSRWPITKLHTDNGPN 852 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+H G+P NPQSQ VE+ N LK I K + L+ A+ +A Sbjct 853 FTSQEVQAMCWWGKIEHTTGVPYNPQSQGSVESMNRQLKEIIGKIRDDCQFLETAVLMAC 912 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 H NFK++G +G M + L Q E+ +Q QKL+ +YY++ +D WK Sbjct 913 HIHNFKRKGGIGDMTSADRLLNILTTQLETKHLQQKI----QKLLNFKVYYREGRDPIWK 968 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 GP + + G+G+V++K E+ + +VPRR + Sbjct 969 GPAILIWKGEGAVVIK-EQGELKVVPRRKAK 998 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16496.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/281(38%), Positives:172/281(61%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + + I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGQRIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18097.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKIIIVAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L AL +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTALQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADP94083.1 Length: 288 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/270(40%), Positives:167/270(61%), Gaps:8/270(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + IQ + QK ++Q +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQ---TKELQKQIIQIQNFRVYYRDSRDPIWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIR 268 P ++ + G+G+V+++D I +VPRR + Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85094.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKXXHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTXVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIXNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDXLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX87803.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHSNWRAIVGDFNLPPVVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ76374.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/281(39%), Positives:170/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ--WLYYKDQKDKKWKGPM 240 NFK++G +G + E + + IQ Q L +Q +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTK-ELQKQILNIQKFRVYYRDNRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35966.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADH16538.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77585.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAXDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK IQ+ + L A+ +A+ Sbjct 121 FTSNALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIQQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+GSV+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGSVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96782.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+H++ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHTNWRAMVSDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTALKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADN28182.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+IIVAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQIDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFILRLAGRWPVRTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + S IQ KL +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIISTDIQTKELQKQITKLQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++ E I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQ-ENSDIKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84302.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMVSDFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIITTDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60597.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP +VA+EI C C+++GE + GQ+ PG Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGX 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQD-YFSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTRLLQKQISKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AWW87338.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPXETGQETAYFILKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKXKIJRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84673.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHERYHSNWRTMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: QEJ77144.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/281(38%), Positives:169/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HE +HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEXYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIXQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYTAGERIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPIWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84476.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMSSDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60415.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/284(38%), Positives:172/284(60%), Gaps:10/284(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEQHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKQIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI-----QQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 NFK++G +G + E I ++ +Q S I QK +YY+D +D WK Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQISNI-QKFR---VYYRDNRDPLWK 236 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 GP ++ + G+G+V+++D + I +VPRR + + + GD+ Sbjct 237 GPAKLLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAU25255.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/291(37%), Positives:172/291(59%), Gaps:24/291(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PG+ Sbjct 1 FLDGIDKAQEEHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGM 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A+IIP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEIIPAETGQDTAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q++S +IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQSTKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 +D WKGP ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 230 NRDPLWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22073.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK+ G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRXGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D+ I +VPRR + + GD+ Sbjct 241 LLWKGEGAVVIQDQGD-IKVVPRRKAKXJRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ATN24689.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTAVKAACWWAGVKQEFGIPYNPQSQGVVESMNNELKKIITQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 LIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I ++PRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVIPRRKAKILRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52069.1 Length: 288 Range 1: 1 to 266 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVXXIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I++ + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIATEIQTRELQNQIXKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNXD-IKVVPRRKAK 266 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX60344.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UXX61126.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMAHDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ ++E+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQNQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82626.1 Length: 275 Range 1: 1 to 266 Score:200 bits(508), Expect:5e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N+ LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNSELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIR 268 + + G+G+V+++D I +VPRR + Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAK 266 >pol protein, partial [Simian immunodeficiency virus] Sequence ID: ALS54593.1 Length: 1023 Range 1: 733 to 1002 Score:214 bits(545), Expect:5e-59, Method:Compositional matrix adjust., Identities:113/275(41%), Positives:175/275(63%), Gaps:10/275(3%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++++IEEA+ HE++H++ + + F +P++VA+EI +CP C+IRGE V GQ+ PG+ Sbjct 733 FLEKIEEAQEEHERYHNNWKEMADTFGIPQVVAKEIVAQCPKCQIRGEPVHGQVDASPGV 792 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQMDCTH GKIII AVHV SGF+ A+IIP+ET T K LL+L+ +T+L TDNGPN Sbjct 793 WQMDCTHLEGKIIITAVHVASGFIEAEIIPRETGKETAKFLLKLLSRWPITKLHTDNGPN 852 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q+++ + + I+H GIP NPQSQ VE+ N LK I K + L+ A+ +A Sbjct 853 FVSQEVQAMCWWGKIEHTTGIPYNPQSQGSVESMNRQLKDIIGKIREDCQYLETAVLMAC 912 Query 183 HCLNFKQRGRLGRMAPYE-----LYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWK 237 H NFK++G +G M + L Q E+ +Q QK + +YY++ +D WK Sbjct 913 HIHNFKRKGGIGDMTSADRLLNILTTQLETKTLQQKI----QKFLNFKVYYREGRDPVWK 968 Query 238 GPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 GP + + G+G+V++K E+ + ++PRR + + + Sbjct 969 GPAVLIWKGEGAVVIK-EQGELKVIPRRKAKIIKD 1002 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BCA82511.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I+ A+ +HEK+HS+ + + +EFNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDRAQEDHEKYHSNWRAMASEFNLPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKAIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V++KD I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIKDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACX35898.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/281(38%), Positives:171/281(60%), Gaps:4/281(1%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNGPN Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQ--QESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 240 NFK++G +G + E I L+ ++ I K+ +YY+D +D WKGP Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQIT-KIQNFRVYYRDSRDPLWKGPA 239 Query 241 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 ++ + G+G+V+++D+ I +VPRR + + + GD+ Sbjct 240 KLLWKGEGAVVIQDKSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACB36789.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMTSDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCGPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKHITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARQ22088.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D IE+A+ HEK+H++ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIEKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: AIS37238.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + +FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQVDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FISNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDMIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ALR96801.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR ++ + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACU29318.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPXVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX85401.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHNNWRAMASDFNIPPVVAKEIVAXCDKCQLKGEAXHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQXRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ KL +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQISKLQNFRVYYRDNRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: QIQ18538.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:109/288(38%), Positives:171/288(59%), Gaps:18/288(6%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HE++HS+ + + +FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHERYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNGPN Sbjct 61 WQLDCTHLEGKVIMVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGPN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + M+ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAXMKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQ---------WLYYKDQKD 233 NFK++G +G + E RI D ++ Q +Q +YY+D +D Sbjct 181 FIHNFKRKGGIGGYSAGE--------RIIDIIASDIQTKELQKQITNIQKFRVYYRDSRD 232 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 WKGP ++ + G+G+V+L+D+ + I +VPRR + + + GD+ Sbjct 233 PIWKGPAKLLWKGEGAVVLQDQSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UJO52141.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:108/282(38%), Positives:168/282(59%), Gaps:24/282(8%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ +HEK+HS+ + + EFNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYYILKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F +Q ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSQAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYI------------QQESLRIQDYFSAIPQKLMMQWLYYKD 230 NFK++G +G + E I Q + L+IQ++ +YY+D Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQNQILKIQNFR-----------VYYRD 229 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 +D WKGP ++ + G+G+V+++D I +VPRR + + + Sbjct 230 SRDPIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84827.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/283(38%), Positives:170/283(60%), Gaps:8/283(2%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVATIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQW----LYYKDQKDKKWKG 238 NFK++G +G + E I + D + + QK + + +YY+D +D WKG Sbjct 181 FIHNFKRKGGIGGYSAGERII---DMIASDLQTKVLQKQITKLQNFRVYYRDSRDPLWKG 237 Query 239 PMRVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 P ++ + G+G+V+++D I +VPRR + + + GD+ Sbjct 238 PAKLLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAX84462.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + EFN+P +VA+EI C C+I+GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMAGEFNIPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T +L+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK + + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIVGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO17751.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGXN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESINNELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ACM44541.2 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP IVA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E + + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGEYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D + I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO16086.1 Length: 282 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GK+I+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GIK + GIP NPQSQ +VE+ NN LK I + + L A+ +A+ Sbjct 121 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNZLKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP R Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKVQNFRVYYRDSRDPLWKGPAR 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 279 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: ADF28970.1 Length: 288 Range 1: 1 to 270 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:164/271(60%), Gaps:2/271(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + +EFNLP IVA+EI C C+++GE GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG++ A++IP ET T LL+L V + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + GI+ + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPE 272 + + G+G+V+L+D I +VPRR ++ + + Sbjct 241 LLWKGEGAVVLQDNSD-IKVVPRRKVKIIKD 270 >integrase, partial [Human immunodeficiency virus 1] Sequence ID: BAO18256.1 Length: 288 Range 1: 1 to 279 Score:200 bits(509), Expect:5e-59, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRPGI 62 ++D I++A+ HEK+HS+ + + ++FN+P +VA+EI C C+++GE + GQ+ PGI Sbjct 1 FLDGIDKAQEEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQVKGEAMHGQVDCSPGI 60 Query 63 WQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNGPN 122 WQ+DCTH GKII+VAVHV SG+L A++IP ET T +L+L VT + TDNG N Sbjct 61 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGTN 120 Query 123 FKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALALAL 182 F + ++ + G+K + GIP NPQSQ +VE+ N LK I + + L A+ +A+ Sbjct 121 FTSNTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 180 Query 183 HCLNFKQRGRLGRMAPYELYIQQESLRIQDY-FSAIPQKLMMQWLYYKDQKDKKWKGPMR 241 NFK++G +G + E I + IQ K+ +YY+D +D WKGP + Sbjct 181 FIHNFKRKGGIGGYSAGERIIDMIASDIQTKELQKQSTKIQNFRVYYRDNRDPLWKGPAK 240 Query 242 VEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 281 + + G+G+V+++D I +VPRR + + + GD+ Sbjct 241 LLWKGEGAVVIQDNTD-IKVVPRRKAKIIRDYGKQMAGDD 279