RID: 5MMF1MSR013 Job Title:sp|P36309|POLG_ASGVP Genome polyprotein Program: BLASTP Query: sp|P36309|POLG_ASGVP Genome polyprotein OS=Apple stem grooving virus (strain P-209) OX=36402 PE=4 SV=1 ID: lcl|Query_66026(amino acid) Length: 2105 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; AltName: Full=241 kDa... Apple stem g... NA 36402 4370 4370 100% 0.0 100.00 2105 P36309.1 RecName: Full=Genome polyprotein; AltName: Full=241 kDa... Pear black n... NA 273525 3771 3771 100% 0.0 85.89 2105 Q6PLS1.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73473 438 603 61% 4e-124 34.84 1884 P27738.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 433 596 57% 1e-122 35.87 1885 P54891.1 RecName: Full=RNA replication polyprotein; AltName: Full=ORF1... Citrus leaf ... NA 686981 406 540 54% 1e-113 33.93 1962 Q91QZ3.1 RecName: Full=RNA replication polyprotein; AltName: Full=ORF1... Potato virus... NA 12168 379 508 62% 5e-105 30.77 1968 P17965.2 RecName: Full=RNA replication polyprotein; AltName: Full=ORF1... Apple stem p... NA 651356 374 505 61% 3e-103 32.11 2183 Q64962.1 RecName: Full=RNA replication polyprotein; AltName: Full=223 k... Blueberry sc... NA 31722 337 479 55% 6e-92 31.57 1967 Q65652.1 RecName: Full=RNA replication protein; Includes: RecName:... Grapevine vi... NA 651358 315 456 62% 2e-85 29.56 1707 Q67704.1 RecName: Full=RNA replication protein; AltName: Full=152 kDa... Potato virus... NA 12170 262 262 16% 8e-77 42.13 353 P22657.1 RecName: Full=RNA replication protein; AltName: Full=ORF 1... Chrysanthemu... NA 12165 202 202 11% 3e-57 44.00 260 P37987.1 RecName: Full=RNA-directed RNA polymerase; Includes: RecName:... Lolium laten... NA 686945 177 243 50% 4e-43 25.52 1729 B1PS76.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686946 177 256 34% 6e-43 30.46 1896 Q9DRA1.1 RecName: Full=RNA replication protein; AltName: Full=150 kDa... Strawberry m... NA 12187 165 233 36% 2e-39 27.96 1323 P28897.1 RecName: Full=RNA replication protein; Includes: RecName:... Indian citru... NA 651357 162 245 32% 2e-38 28.32 1658 Q918W3.1 RecName: Full=RNA replication protein; AltName: Full=194 kDa... Shallot virus X NA 31770 154 229 32% 3e-36 27.85 1718 Q04575.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686947 152 224 34% 2e-35 27.58 1413 Q6YNQ7.1 RecName: Full=RNA replication protein; AltName: Full=147 kDa... White clover... NA 12190 151 151 23% 3e-35 26.19 1294 P15402.1 RecName: Full=RNA replication protein; AltName: Full=147 kDa... White clover... NA 12189 151 151 18% 4e-35 28.36 1294 P09498.1 RecName: Full=RNA replication protein; AltName: Full=186 kDa... Narcissus mo... NA 12180 150 211 29% 5e-35 28.34 1643 P15095.1 RecName: Full=RNA replication protein; AltName: Full=176 kDa... Papaya mosai... NA 12181 150 237 37% 8e-35 28.99 1547 P20951.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 73488 149 222 32% 2e-34 28.04 1456 Q07630.1 RecName: Full=RNA replicase polyprotein [Kennedya yellow mosai... Kennedya yel... NA 36392 148 217 63% 4e-34 23.41 1874 P36304.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 12184 147 147 18% 8e-34 27.54 1456 P22591.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus X NA 12183 145 224 35% 2e-33 27.48 1456 P09395.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 12185 145 226 35% 2e-33 27.74 1456 P17779.1 RecName: Full=RNA replication protein; AltName: Full=152 kDa... Foxtail mosa... NA 12179 144 219 32% 6e-33 30.12 1335 P22168.1 RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 12155 138 138 37% 3e-31 24.18 1844 P20128.1 RecName: Full=RNA replication protein; AltName: Full=156 kDa... Plantago asi... NA 28354 133 133 22% 1e-29 27.04 1385 Q07518.1 RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 31751 130 130 37% 9e-29 24.04 1844 P28477.1 RecName: Full=Genome polyprotein; Includes: RecName:... Maize rayado... NA 652669 130 209 37% 1e-28 25.65 2027 Q91TW9.1 RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 12154 122 122 21% 3e-26 25.53 1844 P10358.2 RecName: Full=RNA replication protein; Includes: RecName:... Grapevine fl... NA 652668 122 209 33% 3e-26 25.00 1949 Q8UZB6.1 RecName: Full=RNA replicase polyprotein [Eggplant mosaic virus] Eggplant mos... NA 12151 121 236 41% 4e-26 27.11 1839 P20126.2 RecName: Full=RNA replicase polyprotein [Erysimum latent virus] Erysimum lat... NA 12152 117 241 48% 6e-25 25.57 1748 P35928.1 RecName: Full=RNA replication protein; Includes: RecName:... Sclerotinia ... NA 686987 112 210 31% 2e-23 29.20 1700 Q6YI57.2 RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat... Grapevine vi... NA 651358 89.0 89.0 8% 2e-18 35.96 198 Q67707.1 RecName: Full=RNA replication protein; AltName: Full=ORF 1... Lily virus X NA 12194 78.6 78.6 7% 3e-15 32.89 162 P27327.1 RecName: Full=RNA replicase polyprotein [Physalis mottle virus] Physalis mot... NA 72539 55.1 55.1 3% 6e-07 33.33 178 P36352.1 Alignments: >RecName: Full=Genome polyprotein; AltName: Full=241 kDa polyprotein; AltName: Full=ORF1 polyprotein; Contains: RecName: Full=Putative RNA-directed RNA polymerase/helicase; Contains: RecName: Full=Coat protein [Apple stem grooving virus (strain P-209)] Sequence ID: P36309.1 Length: 2105 Range 1: 1 to 2105 Score:4370 bits(11334), Expect:0.0, Method:Compositional matrix adjust., Identities:2105/2105(100%), Positives:2105/2105(100%), Gaps:0/2105(0%) Query 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL Sbjct 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 Query 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG Sbjct 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 Query 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP Sbjct 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 Query 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY Sbjct 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 Query 241 EQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAE 300 EQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAE Sbjct 241 EQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAE 300 Query 301 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF 360 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF Sbjct 301 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF 360 Query 361 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIE 420 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIE Sbjct 361 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIE 420 Query 421 VPLSVIILDKVNFIETRFHARMFDIAQAIGVNLDLLGKRFDYEAESEEYFSENGYIFMPS 480 VPLSVIILDKVNFIETRFHARMFDIAQAIGVNLDLLGKRFDYEAESEEYFSENGYIFMPS Sbjct 421 VPLSVIILDKVNFIETRFHARMFDIAQAIGVNLDLLGKRFDYEAESEEYFSENGYIFMPS 480 Query 481 KSNPERNWILNSGSLKIDYSRLVRARRFRLRRDFLDPISKGKSPRKQLFLESTGNIKSNP 540 KSNPERNWILNSGSLKIDYSRLVRARRFRLRRDFLDPISKGKSPRKQLFLESTGNIKSNP Sbjct 481 KSNPERNWILNSGSLKIDYSRLVRARRFRLRRDFLDPISKGKSPRKQLFLESTGNIKSNP 540 Query 541 NAEKNSESGEIKIEGSAENDQPHEVSHTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKR 600 NAEKNSESGEIKIEGSAENDQPHEVSHTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKR Sbjct 541 NAEKNSESGEIKIEGSAENDQPHEVSHTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKR 600 Query 601 RRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLS 660 RRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLS Sbjct 601 RRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLS 660 Query 661 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNAD 720 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNAD Sbjct 661 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNAD 720 Query 721 SLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRL 780 SLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRL Sbjct 721 SLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRL 780 Query 781 GFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGT 840 GFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGT Sbjct 781 GFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGT 840 Query 841 FMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQL 900 FMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQL Sbjct 841 FMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQL 900 Query 901 RYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFA 960 RYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFA Sbjct 901 RYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFA 960 Query 961 DISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANA 1020 DISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANA Sbjct 961 DISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANA 1020 Query 1021 AIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESP 1080 AIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESP Sbjct 1021 AIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESP 1080 Query 1081 LDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAE 1140 LDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAE Sbjct 1081 LDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAE 1140 Query 1141 IFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ 1200 IFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ Sbjct 1141 IFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ 1200 Query 1201 KRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSE 1260 KRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSE Sbjct 1201 KRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSE 1260 Query 1261 KMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR 1320 KMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR Sbjct 1261 KMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR 1320 Query 1321 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFE 1380 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFE Sbjct 1321 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFE 1380 Query 1381 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI 1440 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI Sbjct 1381 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI 1440 Query 1441 DPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII 1500 DPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII Sbjct 1441 DPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII 1500 Query 1501 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV Sbjct 1501 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 Query 1561 RNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQSFTRMQPFSN 1620 RNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQSFTRMQPFSN Sbjct 1561 RNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQSFTRMQPFSN 1620 Query 1621 QTCLIASKGLNQTSRFPLDLVTASSCLISNCLMTPKLIQSGRKATSTNTYTMESSWLGSK 1680 QTCLIASKGLNQTSRFPLDLVTASSCLISNCLMTPKLIQSGRKATSTNTYTMESSWLGSK Sbjct 1621 QTCLIASKGLNQTSRFPLDLVTASSCLISNCLMTPKLIQSGRKATSTNTYTMESSWLGSK 1680 Query 1681 QCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQSTVCLPQTQIWPKG 1740 QCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQSTVCLPQTQIWPKG Sbjct 1681 QCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQSTVCLPQTQIWPKG 1740 Query 1741 LDFVWTLIVHNMNRTLSCLLLTLELHTDASTLQGFWKPKLAIQDGLHRQSAAVKHLNSMR 1800 LDFVWTLIVHNMNRTLSCLLLTLELHTDASTLQGFWKPKLAIQDGLHRQSAAVKHLNSMR Sbjct 1741 LDFVWTLIVHNMNRTLSCLLLTLELHTDASTLQGFWKPKLAIQDGLHRQSAAVKHLNSMR 1800 Query 1801 KSRWPSWIADPRCFWKKVHQTCTLKRDCSEVTRLEGHAQFPLKGGQTQGCKKREDLGPSR 1860 KSRWPSWIADPRCFWKKVHQTCTLKRDCSEVTRLEGHAQFPLKGGQTQGCKKREDLGPSR Sbjct 1801 KSRWPSWIADPRCFWKKVHQTCTLKRDCSEVTRLEGHAQFPLKGGQTQGCKKREDLGPSR 1860 Query 1861 LELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYL 1920 LELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYL Sbjct 1861 LELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYL 1920 Query 1921 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETDEGRKARAGSSG 1980 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETDEGRKARAGSSG Sbjct 1921 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETDEGRKARAGSSG 1980 Query 1981 EKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN 2040 EKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN Sbjct 1981 EKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN 2040 Query 2041 IYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN 2100 IYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN Sbjct 2041 IYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN 2100 Query 2101 LELEG 2105 LELEG Sbjct 2101 LELEG 2105 >RecName: Full=Genome polyprotein; AltName: Full=241 kDa polyprotein; AltName: Full=ORF1 polyprotein; Contains: RecName: Full=Putative RNA-directed RNA polymerase/helicase; Contains: RecName: Full=Coat protein [Pear black necrotic leaf spot virus] Sequence ID: Q6PLS1.1 Length: 2105 Range 1: 1 to 2105 Score:3771 bits(9778), Expect:0.0, Method:Compositional matrix adjust., Identities:1808/2105(86%), Positives:1932/2105(91%), Gaps:0/2105(0%) Query 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 MAFTYRNPLEIAINKLPSKQ+DQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL Sbjct 1 MAFTYRNPLEIAINKLPSKQTDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 Query 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 TLAPIGFK+HSHP+SKMIENHLLYICVPSLLSSFKSVAFFSLRE+K +SFLKMHS FSHG Sbjct 61 TLAPIGFKAHSHPVSKMIENHLLYICVPSLLSSFKSVAFFSLRESKANSFLKMHSAFSHG 120 Query 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 KIKS+GMYNAIIDGKDKYRYGDV F+SFR+RVIGLRDQCLTRNKFPK++F+HDELHFLSP Sbjct 121 KIKSMGMYNAIIDGKDKYRYGDVSFTSFRERVIGLRDQCLTRNKFPKIIFMHDELHFLSP 180 Query 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 FD+A+LFETIPEIDRV+ATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY Sbjct 181 FDIAYLFETIPEIDRVIATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 Query 241 EQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAE 300 EQNLANSKWPFTC+GIQWANR++RVTKLQSLFAHHVFSFDRGRACN+FNHF+KP CLL+E Sbjct 241 EQNLANSKWPFTCNGIQWANRRVRVTKLQSLFAHHVFSFDRGRACNDFNHFNKPGCLLSE 300 Query 301 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF 360 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF Sbjct 301 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSF 360 Query 361 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIE 420 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFI+ASFFEPTEFHLNMRKLLNDLATKGIE Sbjct 361 GEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFISASFFEPTEFHLNMRKLLNDLATKGIE 420 Query 421 VPLSVIILDKVNFIETRFHARMFDIAQAIGVNLDLLGKRFDYEAESEEYFSENGYIFMPS 480 VPL I+LDKVNFIETRFHARMF++A AIGVNLDLLGKRFD+E ESEEYFSENGY+FMPS Sbjct 421 VPLPTIVLDKVNFIETRFHARMFEVASAIGVNLDLLGKRFDFENESEEYFSENGYLFMPS 480 Query 481 KSNPERNWILNSGSLKIDYSRLVRARRFRLRRDFLDPISKGKSPRKQLFLESTGNIKSNP 540 K N +RNWILNS +++DYS+LVRARRFRL+RDF++ I K + PR QLFLE + Sbjct 481 KHNTDRNWILNSCPVRVDYSKLVRARRFRLKRDFVEEILKKRPPRTQLFLEFNKDFGGPV 540 Query 541 NAEKNSESGEIKIEGSAENDQPHEVSHTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKR 600 + EK + + E+ PHE S +++ TEDGQGFEGS+P+DLI+CFE EEI+LPKR Sbjct 541 SFEKEEVEKKGEAATRVEDKAPHEPSCSNLSTEDGQGFEGSLPLDLISCFEQEEIRLPKR 600 Query 601 RRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLS 660 +RKNDCVFKAI+AHLGI++QDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVL+TKGLS Sbjct 601 KRKNDCVFKAIAAHLGIETQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLVTKGLS 660 Query 661 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNAD 720 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGG AQMSNENLNAD Sbjct 661 MVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGNAQMSNENLNAD 720 Query 721 SLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRL 780 S+FDLG+FVHN++RAVKLAKSMARGTTGLLN FD FCK +V LSELFP+NFSSVVGLRL Sbjct 721 SMFDLGKFVHNKERAVKLAKSMARGTTGLLNSFDPNFCKEVVGLSELFPDNFSSVVGLRL 780 Query 781 GFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGT 840 GFAGSGKTHKVLQWINYTP+VKRMFISPRRMLA+EVE +LKGTACQVHTWETAL+KIDGT Sbjct 781 GFAGSGKTHKVLQWINYTPNVKRMFISPRRMLAEEVEGRLKGTACQVHTWETALRKIDGT 840 Query 841 FMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQL 900 FMEVFVDEIGLYPPGYLTLLQMCAFR+ VKGQSE FLK KL ELSKTCL++RCFGDPLQ+ Sbjct 841 FMEVFVDEIGLYPPGYLTLLQMCAFRRTVKGQSERFLKSKLAELSKTCLSLRCFGDPLQM 900 Query 901 RYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFA 960 RYYSAEDTNLLDKTH++DLMIKTIKHKYL QGYRFG+WFQ L+NMPTR+D S+ S KFFA Sbjct 901 RYYSAEDTNLLDKTHELDLMIKTIKHKYLLQGYRFGEWFQSLINMPTRIDSSEISIKFFA 960 Query 961 DISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANA 1020 D+SSVK+EDYGL+LVA+RED GVFAGR+PVATVSESQGMTI KRVLICLDQNLFAGGANA Sbjct 961 DMSSVKSEDYGLVLVARREDIGVFAGRIPVATVSESQGMTIDKRVLICLDQNLFAGGANA 1020 Query 1021 AIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESP 1080 AIVAITRS+VGFDF+LKGN+LKE+QRM+QKTIWQFI+E K IPMERIVNMNPGASFYESP Sbjct 1021 AIVAITRSRVGFDFVLKGNTLKEIQRMSQKTIWQFILEKKRIPMERIVNMNPGASFYESP 1080 Query 1081 LDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAE 1140 LDVGNSSIQDKAS+D+FIMPFINLAEEEVDPEE+ GDVI+PVEWFKCHVPVFDTDP LAE Sbjct 1081 LDVGNSSIQDKASHDVFIMPFINLAEEEVDPEEICGDVIKPVEWFKCHVPVFDTDPMLAE 1140 Query 1141 IFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ 1200 IFDKVAAKEKREFQS+LG+SNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ Sbjct 1141 IFDKVAAKEKREFQSILGMSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ 1200 Query 1201 KRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSE 1260 KRIRKSNWRREK+KFEEFE QG+ELL EF+SMLP EFKVNIK+IE+GEKSFLEKRKLKSE Sbjct 1201 KRIRKSNWRREKTKFEEFEIQGRELLSEFLSMLPCEFKVNIKDIEEGEKSFLEKRKLKSE 1260 Query 1261 KMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR 1320 KMWANHSERSDIDWKLDH FLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR Sbjct 1261 KMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR 1320 Query 1321 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFE 1380 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNA VFDGFSIESDYTAFDSSQDHVILAFE Sbjct 1321 AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDSSQDHVILAFE 1380 Query 1381 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI 1440 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI Sbjct 1381 MALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKI 1440 Query 1441 DPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII 1500 DPR+HRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII Sbjct 1441 DPRKHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGII 1500 Query 1501 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV Sbjct 1501 KSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 Query 1561 RNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQSFTRMQPFSN 1620 +NSKLLTGLSKSLIFEIGEGIGS+W S ST SS+R N Q S+LM SR +F +MQPFS+ Sbjct 1561 KNSKLLTGLSKSLIFEIGEGIGSEWQLSMSTTSSKRLNQQISRLMPSRHLNFIKMQPFSS 1620 Query 1621 QTCLIASKGLNQTSRFPLDLVTASSCLISNCLMTPKLIQSGRKATSTNTYTMESSWLGSK 1680 Q IAS LNQ S+ V S C S+CLMT KL R+ATSTNTY ME L SK Sbjct 1621 QMFSIASNDLNQMSKCLKVRVMDSCCPTSSCLMTQKLTPLERRATSTNTYIMELFLLASK 1680 Query 1681 QCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQSTVCLPQTQIWPKG 1740 QCC T WKG SLYM P W +KE + +S LSLT TL S Q+ L IW KG Sbjct 1681 QCCPTSGEWKGGSLYMTVPVWTQKEVIYVPTYSDLSLTAVTLDSDQNIAYLQLMLIWQKG 1740 Query 1741 LDFVWTLIVHNMNRTLSCLLLTLELHTDASTLQGFWKPKLAIQDGLHRQSAAVKHLNSMR 1800 W L VHN NRT SCLLLTLELHT ST WKPK IQDGLHRQSAAVKHLN+M+ Sbjct 1741 SGSEWILTVHNTNRTQSCLLLTLELHTGVSTQLDSWKPKQVIQDGLHRQSAAVKHLNTMK 1800 Query 1801 KSRWPSWIADPRCFWKKVHQTCTLKRDCSEVTRLEGHAQFPLKGGQTQGCKKREDLGPSR 1860 +SRW SWI + RCFW+KVH+ C LK++CSE TR G A KGGQTQG KKREDLGPS+ Sbjct 1801 RSRWRSWITNHRCFWRKVHRMCILKKECSEGTRSGGRALSLPKGGQTQGQKKREDLGPSQ 1860 Query 1861 LELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYL 1920 LKDL KMSLEDVLQ ARRHRVGVYLWKT IDP KE+LTVPPPE FKEGESFEG+ELYL Sbjct 1861 RGLKDLGKMSLEDVLQLARRHRVGVYLWKTQIDPGKEILTVPPPESFKEGESFEGRELYL 1920 Query 1921 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETDEGRKARAGSSG 1980 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGET+E +KAR GSSG Sbjct 1921 LLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSG 1980 Query 1981 EKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN 2040 EK+KIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN Sbjct 1981 EKSKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATN 2040 Query 2041 IYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN 2100 IYKKWPKAFEKSPWVAFDFATGLKMN+LTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN Sbjct 2041 IYKKWPKAFEKSPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESN 2100 Query 2101 LELEG 2105 LELEG Sbjct 2101 LELEG 2105 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate PLUM P863)] Sequence ID: P27738.1 Length: 1884 Range 1: 971 to 1869 Score:438 bits(1127), Expect:4e-124, Method:Compositional matrix adjust., Identities:332/953(35%), Positives:476/953(49%), Gaps:112/953(11%) Query 709 EAQMSNENLNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNE---------------- 752 E ++N ++ DS RA KL KS+ G TG+++ Sbjct 971 EPDLTNADIKVDS-----------SRAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINST 1019 Query 753 FDLEFCKNMV------TLSELFPE----NFSSV--VGLRLGFAGSGKTHKVLQWIN--YT 798 ++ NMV S+LF + NF V G+ GFAGSGK+H + I + Sbjct 1020 SEMRSFMNMVRGQIEEPKSDLFDKVQELNFMKVKIYGI-FGFAGSGKSHAIQNLIQTEFK 1078 Query 799 PSVKRMFISPRRMLADEVEPQLKGTACQ-VHTWETALKKIDGTFMEVFV-DEIGLYPPGY 856 S M I PRR LA + KG + + T+E+ALK D +F+ DEI L P G+ Sbjct 1079 GSQGIMVICPRRFLAKDWSE--KGVDEKDIKTFESALKS-DVKGKRLFILDEISLLPKGF 1135 Query 857 LTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHD 916 LL ++K E LK I C GDPLQ Y+ +D N L + + Sbjct 1136 TDLL-------MLKMHMEGILKKS---------TIVCIGDPLQAGYFCPKDDNYLSREGE 1179 Query 917 IDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRK--FFADISSV------KTE 968 I + K Y + YR ++ + + + T D + + D+ S K Sbjct 1180 IKRLFKG-GVNYKWYSYRINKFIAKKLAIETMNDFIGIDEQSSIYKDMPSAHHFMEKKGN 1238 Query 969 DYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRS 1028 +ILVA +K +++ V T ESQG+T + V++ ++ A+ +VAITR Sbjct 1239 HIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCSDAHI-MVAITRF 1297 Query 1029 KVGFDFILKGNSLKE-VQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSS 1087 + GF F L KE R + + Q I G E I+ + + S D+ + Sbjct 1298 RRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASKEFILG-SSSVNLILSEKDIAKGA 1356 Query 1088 IQD------KASNDLFIMPFINLAE--EEVDPEEVVGDVIQPVE-WFKCHVPVFDTDPTL 1138 D + D+++ I L + V+P +G VI+ + KCH+PV + TL Sbjct 1357 GIDEMDREARLEGDVWLKSMIYLGKRYHMVEP---LGQVIKLTDDAIKCHIPVCSSQ-TL 1412 Query 1139 AEIFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPF------ARQNVFPHHQASDD 1192 D + A+E REF+ G SNQF + K P+ + + V+P H+ DD Sbjct 1413 GPELDNIQAREYREFKGKNGWSNQFREEAGPNWK---FPYKVNQAMSYEAVYPRHKMDDD 1469 Query 1193 VTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFL 1252 +TF A ++KR+R N +KF+ ES+GK L + F+ +P + + + ++ + F Sbjct 1470 LTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLTKIFLKHVPIKCGRDQRLLDQCRQEFE 1529 Query 1253 EKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVL 1312 E + KS HS+RSD DW LD FLFMKSQ CTK K FTEAKAGQTLACF H +L Sbjct 1530 ETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKIL 1589 Query 1313 FRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTK--NASVFDGFSIESDYTAFDS 1370 F P R E + D+YYIH KNF L+ F + N S+ +ESDYTAFD Sbjct 1590 VEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFARRFSNGSI----CVESDYTAFDV 1645 Query 1371 SQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFAN 1430 SQDH ILAFE+ LL++ G Y+++K TLGCRLG AIMRFTGEF TFLFNT AN Sbjct 1646 SQDHTILAFEVELLRHFGWDDRVLQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLAN 1705 Query 1431 MLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFC 1490 M+FT +Y++ P I FAGDDMC+L +L R + ++ SL A K PMFC Sbjct 1706 MVFTFCRYEV-PDGTPICFAGDDMCALRNL--REIDTHEFILSKLSLKAKVNRTKVPMFC 1762 Query 1491 GWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFE 1550 GW L G+IK P L++ R+++ E L + +D+Y E FAY+LGERLY+ L+ E Sbjct 1763 GWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIEQLN 1822 Query 1551 YHYLVIRFFVRNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSK 1603 YH ++ RFF+RN LL G S+ I E+ +WLS + + S ++ + Sbjct 1823 YHQVLTRFFIRNKHLLRGDSRHNISEL------EWLSDEDGDNDKGSQIEDRR 1869 Range 2: 1 to 380 Score:164 bits(416), Expect:4e-39, Method:Compositional matrix adjust., Identities:121/405(30%), Positives:195/405(48%), Gaps:39/405(9%) Query 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 MAF+YR P E +++LP Q + + + I+K E FSF + + +E TK G+ Sbjct 1 MAFSYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSFYLPEKTREWFTKSGV 60 Query 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 L+P + +HSHP K +ENHLL+ V S +S + VA S++ NK+ ++ Sbjct 61 YLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSNKMSKMERL----GPN 116 Query 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 +K+ + N ++ KDK RYG + R C + +F+HDE+H+ S Sbjct 117 SVKTYDILNRLVTAKDKARYGPLAKPE--------RSPCPKKTN----IFIHDEIHYWSR 164 Query 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 D F + + AT VFP E+L G K S P +Y +++HG + PDGV SE Y Sbjct 165 -DQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSESY 223 Query 241 EQNLANSKWPFTCSGIQWANR------KIRVTKLQSLFAHHVFSF--------DRGRACN 286 Q L N + + S I NR + +V+ + SL +HH+F + R Sbjct 224 TQPLENG-FLLSSSSIIIKNRVTGVEIRYQVSLVYSLGSHHLFHIYPAEDLMKEEVRRFG 282 Query 287 EFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEK 346 ++ FD S L + +R+ + F +V + + YM+ LK + SAVAKLRQL Sbjct 283 PYDLFDVGS-LFVKPVRVPIQDFPLSVFKK-----IFIYMSSLKKPDVQSAVAKLRQLSD 336 Query 347 RDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPH 391 D+ + + + F + G+ + + S +KD F +P+ Sbjct 337 ADISIESVFMIQEFASRIEKNGV-ESWSCSFWGCMKDWFFDKLPY 380 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 1059 to 1870 Score:433 bits(1114), Expect:1e-122, Method:Compositional matrix adjust., Identities:306/853(36%), Positives:441/853(51%), Gaps:70/853(8%) Query 780 LGFAGSGKTHKVLQWIN--YTPSVKRMFISPRRMLADEVEPQLKGTACQ-VHTWETALKK 836 GFAGSGK+H + I + S M I PRR LA + KG + + T+E+ALK Sbjct 1059 FGFAGSGKSHAIQNLIQTEFKGSQGVMVICPRRFLAKDWSE--KGVDEKDIKTFESALKS 1116 Query 837 IDGTFMEVFV-DEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFG 895 D +F+ DEI L P G+ LL ++K E LK I C G Sbjct 1117 -DVKGKRLFILDEISLLPKGFTDLL-------MLKMHMEGILKKS---------TIVCIG 1159 Query 896 DPLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTR-----VD 950 DPLQ Y+ +D N L + +I + K Y + YR ++ + + + T +D Sbjct 1160 DPLQAGYFCPKDDNYLSREGEIKRLFKD-GVNYKWYSYRINKFIAKKLAIETMNDFIGID 1218 Query 951 ESKFSRKFFADISSV------KTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKR 1004 E + D+ S K +ILV +K +++ V T ESQG+T + Sbjct 1219 EQNL---IYKDMPSAHHFMENKGNHIEVILVPSMIEKELYSNYGNVMTFGESQGLTFNCG 1275 Query 1005 VLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKE-VQRMAQKTIWQFIIEGKSIP 1063 V++ ++ A+ +VAITR + GF F L KE R + + Q + G Sbjct 1276 VIVLSEEAKLCSDAHI-MVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGAS 1334 Query 1064 MERIVNMNPGASFYESPLDVGNSSIQD------KASNDLFIMPFINLAEEE--VDPEEVV 1115 E I+ + S DV + D + D+++ I L + V+P + Sbjct 1335 KEFILG-SSSVKLILSEKDVSKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIVEP---L 1390 Query 1116 GDVIQPVE-WFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDME----KNG 1170 G VI+ E KCH+PV + TL D + A+E REF+ G SNQF + K+ Sbjct 1391 GQVIKLTENAIKCHIPVCSSQ-TLGPELDNIQAREFREFKGKNGWSNQFREEAGPNWKHP 1449 Query 1171 CKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFI 1230 +++ + + ++P H+ DD+TF A ++KR+R N +KF+ ES+GK L + F+ Sbjct 1450 YRVN-QAMSYEAIYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKVFL 1508 Query 1231 SMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTK 1290 +P + + + ++ + F E + KS HS+RSD DW LD FLFMKSQ CTK Sbjct 1509 RHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTK 1568 Query 1291 EGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVT 1350 K FTEAKAGQTLACF H +L F P R E + D+YYIH KNF L+ F Sbjct 1569 FEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFAK 1628 Query 1351 KNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGS 1410 + ++ +ESDYTAFD SQDH ILAFE+ LL++ G + Y+++K TLGCRLG Sbjct 1629 RFSN--GSMCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGG 1686 Query 1411 LAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATR 1470 AIMRFTGEF TFLFNT ANM+FT +Y++ P I FAGDDMC+L +L R + Sbjct 1687 FAIMRFTGEFSTFLFNTLANMVFTFCRYEV-PDGTPICFAGDDMCALRNL--REIDTHEC 1743 Query 1471 LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEA 1530 ++ SL A K PMFCGW L G+IK P L++ R+++ E L + +D+Y E Sbjct 1744 ILSKLSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEF 1803 Query 1531 IFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSLIFEIGEGIGSKWLSSTS 1590 FAY+LGERLY+ L+ E YH ++ RFF+RN LL G S+ I E+ +WLS Sbjct 1804 SFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISEL------EWLSDED 1857 Query 1591 TASSRRSNLQTSK 1603 + + S ++ + Sbjct 1858 SDDDKGSQIEDRR 1870 Range 2: 1 to 380 Score:162 bits(411), Expect:1e-38, Method:Compositional matrix adjust., Identities:120/405(30%), Positives:195/405(48%), Gaps:39/405(9%) Query 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 MAF+YR P E +++LP Q + + + +K E FSF + + +E TK G+ Sbjct 1 MAFSYRTPQEELLSRLPQSQQEAISGFQYERFQKEEEKKVENFSFYLPEKTREWFTKSGV 60 Query 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 L+P + +HSHP K +ENHLL+ V S +S + VA S++ NK+ ++ S Sbjct 61 YLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSNKMSKMERLGS----N 116 Query 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 +K+ + N ++ KDK RYG + R C + +F+HDE+H+ S Sbjct 117 SVKTYDILNRLVTAKDKARYGPLARPE--------RSPCPKKTN----IFIHDEIHYWSR 164 Query 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECY 240 D F + + AT VFP E+L G K S P +Y +++HG + PDGV SE Y Sbjct 165 -DQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSESY 223 Query 241 EQNLANSKWPFTCSGIQWANR------KIRVTKLQSLFAHHVFSF--------DRGRACN 286 Q L N + + S I N+ + +V+ + SL +HH+F + R Sbjct 224 TQPLENG-FLLSSSSILVRNKATGVEIRYQVSLVYSLGSHHLFHIYPTEDLMKEEVRRFG 282 Query 287 EFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEK 346 ++ FD S L + +R+ + F +V + + Y++ LK + SAVAKLRQL Sbjct 283 PYDLFDVGS-LFVKPVRVPIQDFPLSVFKK-----IFIYLSSLKKPDVQSAVAKLRQLSD 336 Query 347 RDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPH 391 D+ + + V F + G+ + S + +KD F +P+ Sbjct 337 ADISIESVFMVQEFASRVEKNGV-GSWSCSFWECMKDWFFDKLPY 380 >RecName: Full=RNA replication polyprotein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Citrus leaf blotch virus FRA/SRA-153] Sequence ID: Q91QZ3.1 Length: 1962 Range 1: 1159 to 1955 Score:406 bits(1044), Expect:1e-113, Method:Compositional matrix adjust., Identities:283/834(34%), Positives:433/834(51%), Gaps:70/834(8%) Query 776 VGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRMLAD------EVEPQLKGTACQVHT 829 V + GFAGSGK+ K+ W++ +SPR LA E+EP + +V T Sbjct 1159 VTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQR---KVST 1215 Query 830 WETALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCL 889 +E +K + +DE+ L+P GYL LL +L ++++ C Sbjct 1216 FEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVY-----------------ELADVNRHCQ 1258 Query 890 NIRCFGDPLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMP--T 947 I F DPLQ RY++ D ++L HD+D +I +Y++ +R ++F ++P Sbjct 1259 IILLF-DPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFN 1317 Query 948 RVDESKFSRKFFAD-------ISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMT 1000 + D ++ R + D I S + E ++LV +K F+ + V T ESQG+T Sbjct 1318 QADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLT 1377 Query 1001 ISKRVLICLDQNLFAGGANAAIVAITRSKVGFDF---ILKGNSLKEVQRMAQKTIWQFII 1057 + V I L ++ A +VA+TR++ F L G ++E + ++++ I+ Sbjct 1378 FN-HVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGG--IEEFKVKRKESLITSIL 1434 Query 1058 EGKSIPMERIVNMNPGASFYESPLDVG---NSSIQDKASNDLFIMPFINLAEEEVDPEEV 1114 +G+ I R+ N+ + + G +++ D F+ PFI L + E+ Sbjct 1435 QGEKITFNRL-NLMLKCNLIRREKENGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDE 1493 Query 1115 VGD--VIQPVEWFKCHVPVFDTDPT--LAEIFDKVAAKEKREFQSVLGLSNQFLD----M 1166 V + + +P C ++ T+P L FD + KE+RE++ + ++NQF D + Sbjct 1494 VEEVKIREPT----CQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKV 1549 Query 1167 EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GK 1223 NG + P + ++P H A DD+TFW V+KR+ +R E+ ++ G Sbjct 1550 HINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLV---FREEEENYQRLSRAHLVGG 1606 Query 1224 ELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFM 1283 L F + EF + +E+ +F +K+ KS +HS RSDIDW L+ FLFM Sbjct 1607 LLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFM 1666 Query 1284 KSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF 1343 KSQ CTK K F +AKAGQTLACFQH++L +F P R +E+ + YIHS KNF Sbjct 1667 KSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFD 1726 Query 1344 CLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLT 1403 L+++V K +ESDY AFD+SQD IL+FE+ L++ ++ Y+ LK Sbjct 1727 DLNAWVKKFFQ--RDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYIDLKCK 1784 Query 1404 LGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRR 1463 LGC+LG +IMRFTGEFCTFLFNT ANM FT +Y+ R I FAGDDMC+L++L Sbjct 1785 LGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEW-RRGQPIAFAGDDMCALNNLA-- 1841 Query 1464 RGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECV 1523 L + SL A E + PMFCGW L+PYGI+K P+L++ R ++ E + EC+ Sbjct 1842 VCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECL 1901 Query 1524 DNYLFEAIFAYRLGERLYTILK-EEDFEYHYLVIRFFVRNSKLLTGLSKSLIFE 1576 +NY E +AY L ERLY +LK E +YH V+RF V + L + L E Sbjct 1902 ENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLE 1955 Range 2: 7 to 373 Score:134 bits(336), Expect:8e-30, Method:Compositional matrix adjust., Identities:104/372(28%), Positives:180/372(48%), Gaps:22/372(5%) Query 6 RNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPI 65 + +E + K D + + I E N+ F++S+ +++ +K G+ L P Sbjct 7 KTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPN 66 Query 66 GFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKM-----HSVFSHG 120 G+ HSHP+SK+ ENHLL+ +P ++++ + V S++E+KV F + V Sbjct 67 GYLPHSHPLSKIFENHLLFDVLPGVVNTSRLV-MCSIKESKVLVFKGIRDKSRRQVSDLN 125 Query 121 KIKSLG-----MYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRN-----KFPKVLF 170 + SL N ++ KD RY + E +F G + +RN + + +F Sbjct 126 ALNSLNNSHTSFINRLVASKDVSRYTE-EADAFFQSKKG-SPELFSRNFIKSLENKEAVF 183 Query 171 LHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSF 230 HDE+H + M F F ++ R + T V+P E+L S+ P+VY +KV F Sbjct 184 FHDEVHHWTKAQM-FSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFF 242 Query 231 YPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNH 290 +PDGV +E YEQ L N +W F+ S ++ + VT+ +S++AHH+F G + Sbjct 243 FPDGVKTEAYEQKL-NMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKL 301 Query 291 F--DKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRD 348 F D S +++ + ++ I+ + + +Y+ CLK + S +AKLRQ+ D Sbjct 302 FFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDD 361 Query 349 LYPDELNFVYSF 360 + E F F Sbjct 362 VEIKEFLFFEQF 373 >RecName: Full=RNA replication polyprotein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Potato virus M (strain Russian)] Sequence ID: P17965.2 Length: 1968 Range 1: 991 to 1967 Score:379 bits(973), Expect:5e-105, Method:Compositional matrix adjust., Identities:316/1027(31%), Positives:482/1027(46%), Gaps:102/1027(9%) Query 603 KNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMV 662 +N CV ++++ LG + D+L + + + ++ GL+ +E VL + +V Sbjct 991 RNGCVIESVAQALGTRNADILAVVEERCCEEVVES-VQAGLGLNLHHVEIVL--QCFDIV 1047 Query 663 YTSDFKEMAVLNRKYGVNGKM-YC-TIKGNH-----------CELSSKECFIRLLKEGGE 709 + + + GKM +C I H C+L S ++ E Sbjct 1048 GHCNLGDKEI---TLNAGGKMPFCFDISDEHMSFCGRRKDPICKLVSGALHGKMFAESAL 1104 Query 710 AQMSNENLNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFP 769 + N L D F N +RA LA SM +G TG+L +NM E F Sbjct 1105 LDLENCGLKID-------FEPNWNRAGMLADSMYQGATGVLGSALFNNKRNM---REKFV 1154 Query 770 ENFSSVVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQL-------KG 822 N S + +G GSGK+ + Y F+SPRR LA++ + + + Sbjct 1155 RNVSLSLHAIVGTFGSGKSTLFKNLLKYGAGKSLDFVSPRRALAEDFKRTVGMNERGGRA 1214 Query 823 TACQ----VHTWETALKKIDGTFME----VFVDEIGLYPPGYLTLLQMCAFRKIVKGQSE 874 A Q V T ET L +++ F+ V +DE+ LYPPGY L+ Sbjct 1215 KAGQENWRVTTLETFLARVE--FLTEGQVVILDEMQLYPPGYFDLV-------------- 1258 Query 875 NFLKGKLLELSKTCLNIRCF--GDPLQLRYYSAEDTNLLDKTH-DIDLMIKTIKHKYLFQ 931 +S +++R F GDP Q Y S +D +L ++ +++ ++ Y + Sbjct 1259 ---------VSMLKVDVRLFLVGDPAQSDYDSEKDRLVLGAMEENMSVVLGAREYNYKVR 1309 Query 932 GYRF------GQWFQELVNMPTRVDESKFSRKFFADISSVKTEDYGLILVAKREDKGVFA 985 +RF G+ E+ +DE R ++ V E ++LV+ ++K V Sbjct 1310 SHRFLNCNFIGRLPCEINKDDCTIDEPHIMRMHLENLLDVAEEYKSVVLVSSFDEKMVVC 1369 Query 986 GRVP---VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFI-LKGNSL 1041 +P V T ES G+T I + I A+ R + F+ G Sbjct 1370 AHLPEAKVLTFGESTGLTFMHGT-IYISAVSERTNERRWITALRRFRFNLCFVNCSGMDY 1428 Query 1042 KEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYES--PLDVGNSS--IQDKASNDLF 1097 +++ + + + +IP + + +M PG + ++S P +G ++K + D + Sbjct 1429 QQLAGRYKGRVRSKFLCKTAIP-DDLNSMLPGQALFKSEYPRLIGKDEGVREEKLAGDPW 1487 Query 1098 IMPFINLAEE-EVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSV 1156 + INL + EV+ E +V+ EWF+ H+P + + A+ K+ AKE RE + Sbjct 1488 LKTMINLYQAPEVEIAEE-PEVVMQEEWFRTHLPRDELESVRAQWVHKILAKEYREVRMG 1546 Query 1157 LGLSNQFLDMEKNGCKIDILPFARQ---NVFPHHQASDDVTFWAGVQKRIRKSNWRREKS 1213 +S QF L A + ++P H+ASD VTF V+KR+ SN +EK Sbjct 1547 DMVSEQFTHDHTKQLGAKQLTNAAERFETIYPRHRASDTVTFLMAVKKRLSFSNPGKEKG 1606 Query 1214 KFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDID 1273 S GK LL EF+ +P + N++ +E+ +F EK+ KS NHS RS D Sbjct 1607 NLFHAASYGKALLSEFLKRVPLKPNHNVRFMEEALWNFEEKKLSKSAATIENHSGRSCRD 1666 Query 1274 WKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDS 1333 W D A +F KSQ CTK F AKA Q++ CFQH VL RF P +R IE + Sbjct 1667 WPTDVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMKVHEVLPKN 1726 Query 1334 YYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEF 1393 YYIHSGK LD++V K FD ESDY AFD+SQD I+AFE+ L++YL + + Sbjct 1727 YYIHSGKGLEELDAWVKKGK--FDRICTESDYEAFDASQDEFIMAFELELMKYLRLPSDL 1784 Query 1394 QLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD 1453 DY +K +LG +LG+ AIMRF+GE TFLFNT ANMLFT ++Y I I FAGDD Sbjct 1785 IEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMRYNIRGDEF-ICFAGDD 1843 Query 1454 MCSLSSLKRRRGERATRLMKSFSLTAVEEVRKF---PMFCGWYLSPYGIIKSPKLLWARI 1510 MC+ L+ + + + L A + +F P FCGW+L P GI K P+L+ R+ Sbjct 1844 MCASRRLQPTK--KFAHFLDKLKLKAKVQFVQFVNKPTFCGWHLCPDGIYKKPQLVLERM 1901 Query 1511 KMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLS 1570 + E L C+DNY E +AY+LGE+ + EE+ Y +R VRN L+ Sbjct 1902 CIAKEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDV 1961 Query 1571 KSLIFEI 1577 K +FE+ Sbjct 1962 KQ-VFEV 1967 Range 2: 1 to 352 Score:128 bits(322), Expect:4e-28, Method:Compositional matrix adjust., Identities:104/363(29%), Positives:171/363(47%), Gaps:30/363(8%) Query 1 MAFTYRNPLEIAINKL-PSKQSDQLLSLTTDEIEKTLEVTN-RFFSFSITPEDQELLTKH 58 MA TYR P+E +N P+ Q+ +++ + + K E + ++F++ ++P + L+ Sbjct 1 MAVTYRTPMEDIVNCFEPATQA--VIANSAATLYKNFEEQHCQYFNYYLSPLAKRKLSMA 58 Query 59 GLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFS 118 G+ L+P HSHP+ K +EN++LY +PS ++S S F ++E K+ LK Sbjct 59 GIYLSPYSAVVHSHPVCKTLENYILYSVLPSYINS--SFYFVGIKERKLQ-LLKSKC--- 112 Query 119 HGKIKSLGMYNAIIDGKDKYRY-------GDVEFSSFRDRVIGLRDQCL------TRNKF 165 + S+ + N + D+ RY G E + +GL ++ L R Sbjct 113 -KNLDSVQVVNRYVTSADRMRYTNDFVPYGSYEHECLVHKGVGLDNEALRGLVGPLRRHK 171 Query 166 PKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHG 225 K LF HDELH+ S + F + D+++ T V+P ELLF S YTY + G Sbjct 172 AKNLFFHDELHYWSS-KVLIDFLDVMRPDKLLGTVVYPPELLFKPTRSLNEWCYTYDIVG 230 Query 226 SSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKI-RVTKLQSLFAHHVFSFDRGRA 284 + F+PDGV SE Y+Q L + ++ + + V L S F HH+ S +G A Sbjct 231 DTLMFFPDGVQSEGYQQPLKGG-YLLGARSLKLPDGTVYMVDVLCSKFPHHLISITKGEA 289 Query 285 CNEFNHFDKPSCLLAEEMRLLTKRFDKAV---INRSTVSSLSTYMACLKTANAASAVAKL 341 + P +A E T D ++ V+ + Y+ LK + SA+AKL Sbjct 290 AAPTHRAFGPFEAVASEALKATLSPDYPCAFPVSYEVVNKIYRYLRTLKKPDEQSAIAKL 349 Query 342 RQL 344 Q+ Sbjct 350 SQI 352 >RecName: Full=RNA replication polyprotein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Apple stem pitting virus PA66] Sequence ID: Q64962.1 Length: 2183 Range 1: 1327 to 2166 Score:374 bits(959), Expect:3e-103, Method:Compositional matrix adjust., Identities:280/872(32%), Positives:424/872(48%), Gaps:70/872(8%) Query 733 DRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPE-NFSSVVGLRLGFAGSGKTHKV 791 DRA L S G TG+L + E K++ S+L PE + + LG G GK+ Sbjct 1327 DRASTLLDSFEIGATGVLCQGIKEAQKDLA--SKLIPELVHERKLIMILGTFGCGKSSLF 1384 Query 792 LQWINYTPSVKRMFISPRRMLADEVEPQL-------KGTA-------CQVHTWETALKKI 837 ++I +P F+SPRR LA+ + L K T +V T+E + + Sbjct 1385 KKFIEKSPGKAITFVSPRRSLAESINHDLGLARVGGKKTGKSKDLKNVRVKTFELFILHL 1444 Query 838 DGT--FMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFG 895 D V +DEI L+PPGY+ L I+ G N +NI G Sbjct 1445 DSIKEGHTVVIDEIQLFPPGYIDL--------IILGLKPN-------------VNIIIAG 1483 Query 896 DPLQLRYYSAEDTNLLDKTHDIDLMI---KTIKHKYLFQGYR----FGQWFQELVNMPTR 948 DP Q Y + D ++ + + I ++ K L Q +R +G+ L Sbjct 1484 DPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLT 1543 Query 949 VDESKFSR-KFFADISSVKTEDYGLILVAKREDKGVFAG----RVPVATVSESQGMTISK 1003 +DE +++ + S + +D ++LV+ E+K + A ++ T ES G+ K Sbjct 1544 LDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKKIVAAHLGLKMKCITYGESTGLNFQK 1603 Query 1004 RVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSL---KEVQRMAQKTIWQFIIEGK 1060 ++ ++ A++R FI G + + K + +F K Sbjct 1604 GAILVTYESALTSDRRWW-TALSRFSHDIHFI-NGMGVTWDNAITHFVGKPLHKFFT--K 1659 Query 1061 SIPMERIVNMNPG----ASFYESPLDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVG 1116 + I+++ PG ++S + + K D ++ I L + E+ Sbjct 1660 RACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQNPDFEIEIAD 1719 Query 1117 DVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLD--MEKNGCKID 1174 +V +WFK H+P+ + A+ K+ ++E REF+ + QF D + G ++ Sbjct 1720 EVEAAEDWFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELT 1779 Query 1175 ILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLP 1234 + ++P H+ +D TF V+KR+ S+ E +K + GK LL F+ +P Sbjct 1780 NAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVP 1839 Query 1235 FEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM 1294 + K +++ +F EK+ KS NHS RS DW +D A +FMKSQ CTK Sbjct 1840 LNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTKFDNR 1899 Query 1295 FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAS 1354 F AKAGQTLACFQH VL RF P +R IES + YIHSGKN L ++VT S Sbjct 1900 FRSAKAGQTLACFQHSVLCRFAPYMRYIESKVTEVLPKNLYIHSGKNIDDLAAWVT--TS 1957 Query 1355 VFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIM 1414 F+G ESDY AFD+SQDH ILAFE+ ++++LG+ + DY +K LG +LGS AIM Sbjct 1958 KFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPSDLIADYTFIKTHLGSKLGSFAIM 2017 Query 1415 RFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKS 1474 RFTGE TFLFNT ANMLFT L+Y ++ R I FAGDDMC+ S LK R + + Sbjct 2018 RFTGEASTFLFNTMANMLFTFLRYDLNGRE-AICFAGDDMCANSRLKVT--NRFSNFLDK 2074 Query 1475 FSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAY 1534 L A + P FCGW L +G+ K P L+ R+++ E + L+ C+DNY E AY Sbjct 2075 IKLKAKVQFTATPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAY 2134 Query 1535 RLGERLYTILKEEDFEYHYLVIRFFVRNSKLL 1566 ++GE L L ++ + HY +RF V+++ LL Sbjct 2135 KMGENLNLYLTPQEVDAHYNCVRFIVQHNHLL 2166 Range 2: 1 to 470 Score:131 bits(330), Expect:5e-29, Method:Compositional matrix adjust., Identities:134/492(27%), Positives:228/492(46%), Gaps:58/492(11%) Query 1 MAFTYRNPLEIAINKLPSKQSDQL-----LSLTTDEIEKTLEVTNRFFSFSITPEDQELL 55 MA R E I S++ ++ L+LT E +K + F++++ + L Sbjct 1 MALLSRTAAEEVIASFTSEEQSRISTQAVLALTNVEKDK-----HDLFNYALPELAKMRL 55 Query 56 TKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHS 115 G+ L+P ++ HSHP+ K +EN++L+ +PS L + S S+++NKVD FLK Sbjct 56 FNSGIYLSPHSYRPHSHPVCKTLENNILFNILPSYLDN--SFYLVSIKKNKVD-FLKRR- 111 Query 116 VFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSS-------FR-DRVIGLRDQCLTRNKFP- 166 H ++ + N I DK RYG S F+ DR G D + P Sbjct 112 ---HPDLQMVETINRYISSIDKTRYGGFFHVSPSKISAKFKCDRRTGFEDDASLIDLIPG 168 Query 167 ------KVLFLHDELHFLSPFDM-AFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVY 219 K F HDELH+ + + FL PE+ ++A+ VFP E+L G K S P Y Sbjct 169 CMEGARKRFFFHDELHYWTKEALITFLDHVKPEV--MLASIVFPPEILAGAKESLNPWCY 226 Query 220 TYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSF 279 T+++ G F+PDG SE Y Q +A S T + ++ L+S F+HH+ S Sbjct 227 TFRIVGKDLVFFPDGEQSEAYIQPVAGSYLLRTGKITTPSGDIFQLDLLKSSFSHHLISI 286 Query 280 DRGRACNE----FNHFDKPSCLLAEEMRLLTKRFDKAV-INRSTVSSLSTYMACLKTANA 334 +G A + FN F+ + + + L ++ + + I+++T+ + Y+ LK + Sbjct 287 TKGEAIGQKMRFFNGFE---AVAMKGLNPLRRKVESCLPISKNTILKIYRYLRTLKKPDL 343 Query 335 ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMR-DDFDVSVL----QWVKDKFCQVM 389 SA+AKL Q+ K D + F E F ++ D + +++ + V+ F ++ Sbjct 344 QSAMAKLSQVCK-----DPNGYEIKFFEEFSKLCLKCDTLNTNMIPDMKRIVQGFFLKLF 398 Query 390 PHFIAASFFEPTEFHL-NMRKLLNDLATKGIEVPLSVIILDKVNFIETRFHARMFDI--- 445 P+ I+ +F + HL N + L + LS+ D + F+ F F++ Sbjct 399 PNPISRNFKVVQQLHLDNFIETLEEFNFSINTESLSLNWKDDLEFVNLTFGDTDFNVEDS 458 Query 446 -AQAIGVNLDLL 456 A+A G D++ Sbjct 459 FAEAWGTKKDVV 470 >RecName: Full=RNA replication polyprotein; AltName: Full=223 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Blueberry scorch virus] Sequence ID: Q65652.1 Length: 1967 Range 1: 1122 to 1953 Score:337 bits(863), Expect:6e-92, Method:Compositional matrix adjust., Identities:274/868(32%), Positives:401/868(46%), Gaps:71/868(8%) Query 734 RAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRLGFAGSGKTHKVLQ 793 RA LA + G+TG++ E + L E +G+ LG G GK+ + Sbjct 1122 RAKLLADCLHDGSTGVMCS---ELYNDKGHLCPEGRETTRVTIGVLLGTFGCGKSRLFKE 1178 Query 794 WINYTPSVKRMFISPRRMLADEVEPQLKGTACQVH----------TWETAL----KKIDG 839 + +ISPR+ L D + +++ + T+E A+ K G Sbjct 1179 ILFKLCGKSVCYISPRKALCDSFDDEIRKARGNMGERGIKHYKSLTFEKAILQASKLHKG 1238 Query 840 TFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQ 899 + V +DEI LYPPGYL LL + A G + + GDP Q Sbjct 1239 SL--VIIDEIQLYPPGYLDLLLLLA------GPTMKYFA---------------LGDPCQ 1275 Query 900 LRYYSAEDTNLLDKTH-DIDLMIKTIKHKYLFQGYRF-GQWFQELVNMPTRVDESKFSR- 956 Y S +D +L D+ ++ I++K+ RF F+ +P + E Sbjct 1276 SDYDSEKDRTILGSVRSDVFELLDGIEYKFNILSRRFQSSLFRG--RLPCLMYEEDLEAG 1333 Query 957 ---KFFADISSVKTEDY--GLILVAKREDKGV----FAGRVPVATVSESQGMTISKRVLI 1007 + + S+ T LV+ E+K + F R T ES GMT V Sbjct 1334 APLRLIDGLESIDTSAAYSRCCLVSSFEEKKIVNAYFGERTKCLTFGESTGMTFD--VGC 1391 Query 1008 CLDQNLFAGGANAA-IVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMER 1066 L ++ A + I A++R + F+ + + + W +S E Sbjct 1392 VLITSISAHTSEQRWITALSRFRKDIVFVNAASVAWDTLQSVYANRWLGRFLNRSARQED 1451 Query 1067 IVNMNPGA-----SFYESPLDVGNSSIQDKASNDLFIMPFINLAE-EEVDPEEVVGDVIQ 1120 + M PG F ++ L + K D ++ ++L + E+++ E+ +V+Q Sbjct 1452 LRRMLPGTPLFVEGFQKNLLGADEGKRECKLEGDPWLKTMVDLLQVEDMEDIEIAKEVLQ 1511 Query 1121 PVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFAR 1180 EW K H+P + + A K+ AKE RE + +S QF D + A Sbjct 1512 D-EWCKTHLPQCELESVRARWVHKILAKEFREKRMGCLVSEQFTDQHSKQMGKHLTNSAE 1570 Query 1181 --QNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFK 1238 + ++P H+A+D VTF V+KR+ S +E +K + G LL+EF+ +P + Sbjct 1571 RFETIYPRHRAADTVTFIMAVRKRLSFSCPIKESAKLNQALPYGPFLLKEFLKRVPLKPM 1630 Query 1239 VNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEA 1298 + K +E + F EK+ KS NHS RS DW +D +F KSQ CTK F +A Sbjct 1631 HDRKMMEQAKFDFEEKKTSKSAATIENHSNRSCRDWLIDVGLVFSKSQLCTKFDNRFRDA 1690 Query 1299 KAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDG 1358 K QT+ CFQH VL RF P +R IE YYIHSGK L+ +V + F+G Sbjct 1691 KRAQTIVCFQHAVLCRFAPYMRYIEKKLNEVLPSKYYIHSGKGLEELNRWVIEGR--FEG 1748 Query 1359 FSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTG 1418 ESDY AFD+SQDH I+AFE+ L++YLG+ + DY +K LG +LG+ AIMRF+G Sbjct 1749 VCTESDYEAFDASQDHYIVAFEICLMRYLGLPNDLIEDYKFIKTHLGSKLGNFAIMRFSG 1808 Query 1419 EFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLT 1478 E TFLFNT ANMLFT L+Y + RI FAGDDMC+ L + M L Sbjct 1809 EASTFLFNTMANMLFTFLQYDLKG-NERICFAGDDMCANGRL--HVSSKHKNFMSKLKLK 1865 Query 1479 AVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGE 1538 A P FCGW LS GI K P+L+ R+ + E L C+DNY E FAY +GE Sbjct 1866 AKVSNTMNPTFCGWNLSSDGIFKKPQLVLERLCIAKETNNLANCIDNYAIEVSFAYLMGE 1925 Query 1539 RLYTILKEEDFEYHYLVIRFFVRNSKLL 1566 R + EE+ E Y +R V++ LL Sbjct 1926 RAKQRMDEEEVEAFYNCVRIIVKSKHLL 1953 Range 2: 1 to 349 Score:142 bits(358), Expect:2e-32, Method:Compositional matrix adjust., Identities:116/362(32%), Positives:174/362(48%), Gaps:31/362(8%) Query 1 MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGL 60 MA TYR+P+E + + S ++ + +F +S+ +E L+K G+ Sbjct 1 MALTYRSPVEEVLTLFEPTAQSLIASAAVSAFQRHEKDNFEWFRYSVPAFAKEHLSKAGI 60 Query 61 TLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHG 120 L+P HSHP+ K +EN++LY+ VPS+++S + F +++ K++ FLK S F Sbjct 61 YLSPYAGFPHSHPVCKTLENYILYVVVPSIVNS--TFFFVGIKDFKIN-FLK--SRFD-- 113 Query 121 KIKSLGMYNAIIDGKDKYRYGD-------VEFSSFRDRVIGLRDQCLTRNKFPKV----- 168 K+ + N + DK RYG+ VE + + R GL D + P V Sbjct 114 KLNMISALNRYVSSADKIRYGNDFVIRAGVEHRALK-RHRGLVDSPTLKALMPNVKSGSK 172 Query 169 LFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSF 228 LFLHDELH+ S ++ E I E + ++ T ++P ELL G S P Y Y+V Sbjct 173 LFLHDELHYWSKEELIGFLE-ICEPEVLLGTVIYPPELLIGSDCSLNPWCYEYEVKKKKL 231 Query 229 SFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIR-VTKLQSLFAHHVFSFDRGRACNE 287 FYPDGV SE YEQ L+ + S I+ N I V L S FAHH+FS RG Sbjct 232 LFYPDGVRSEGYEQPLSGG-YLLQTSRIKLPNAGIYCVDLLCSRFAHHLFSITRGDLITP 290 Query 288 FNHFDKP-----SCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLR 342 N P S LA R + +++ T+ + Y+ LK + SA+AK Sbjct 291 DNRSFGPFEAVHSGALAGISRGKPNFYP---VSQHTILRVYRYLRSLKKPDKQSAMAKFS 347 Query 343 QL 344 Q+ Sbjct 348 QI 349 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Grapevine virus A isolate Is 151] Sequence ID: Q67704.1 Length: 1707 Range 1: 761 to 1651 Score:315 bits(806), Expect:2e-85, Method:Compositional matrix adjust., Identities:285/964(30%), Positives:457/964(47%), Gaps:86/964(8%) Query 593 EEIKLPKRRRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEE 652 E I ++ + N C KA + H+ + + ++ +VN L + ED G S + Sbjct 761 EGIDYLQKNQGNMCSLKAFADHMQLSTPSVIA-IVNGASPQTLREI--EDGGYSLATL-- 815 Query 653 VLITKGLSMVYTSDFKEMAVLNRKY----GVNGKMYCTIKGNHCELSSKECFIRLLKEGG 708 V ++K L DF R Y G +++ I H E F + +GG Sbjct 816 VNLSKAL------DFPIAIHGERGYAETPGSYRRLHLKITSGHVE-----PFEGVTSKGG 864 Query 709 --EAQMSNENLNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSE 766 EA + + + +G F ++ +A +LA+S G TG+L ++ K + E Sbjct 865 FREAMLLGDGVG------VGHFRVDKAKADRLAQSFYNGNTGVLLG---KYNKGKMHTGE 915 Query 767 LFPENFSSVVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQ 826 + E V+ GFAGSGK+H + + K + ISPR++L D+ ++ + Sbjct 916 I--EEPKEVL-TAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKISKKH-R 971 Query 827 VHTWETALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSK 886 V T+E A D ++ +DEIGL PPGY+ L+ I Q + Sbjct 972 VVTFEVAFMD-DYGCKDIVIDEIGLLPPGYIDLV-------IAAHQPRTLV--------- 1014 Query 887 TCLNIRCFGDPLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMP 946 GDPLQ Y+S D +L+ + + K YL +R + + L + Sbjct 1015 ------LLGDPLQSTYHSKRDNVVLEASQEDVFNRVRGKLPYLCYSHRLPRNCK-LFEIE 1067 Query 947 TRVDESKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVL 1006 ES+ ++ + +K E A +E+KG +G TVSE+QG++ K L Sbjct 1068 CMGAESE--KRVVYRSNRLKDEPTICATRAMKEEKG--SGWY---TVSETQGLSF-KSCL 1119 Query 1007 ICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMER 1066 I LD++ +VA+TRS+ + K++ A+ T+ + +++G++ Sbjct 1120 IYLDEHWAKKEDEDVMVALTRSRGEIGIHVTPALKKKLITNAKSTLLKKVLKGETYRRSE 1179 Query 1067 IVNM------NPGASFYESPLDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQ 1120 IV M F ES L + + + D ++ + L +E + + + + Sbjct 1180 IVAMVRKHIPETTVLFEESRL-AETVDYEARLAGDPYLKSLLALYDEIEMEDIEIEEPVT 1238 Query 1121 PVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDIL-PFA 1179 +E K H+ + LA FD + AKE RE + G + Q +++NG + ++ P Sbjct 1239 -LEPTKTHLALSTKMNELAP-FD-LKAKEHREQHTEAGRTEQ---IDENGYQGEVGDPMT 1292 Query 1180 RQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKV 1239 + ++ H + D TF V+KR+R N+ + K++ G ++ F + Sbjct 1293 HKALYLRHTSDDTATFMMSVKKRLRFRNYEANRRKYKTCHGIGHQMFSVFKDTYQLKEID 1352 Query 1240 NIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAK 1299 ++ E+E E F++KR KS + H+ RSD DW ++ +F+K Q CTK K +AK Sbjct 1353 SLPELERCEMEFMKKRIEKSTGLIEKHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAK 1412 Query 1300 AGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGF 1359 AGQT+ACF H VL RFGP+LR E A + I+S K + LD + G Sbjct 1413 AGQTIACFAHSVLCRFGPILRQTEKALRELLPEKLMIYSQKKYMDLDKWAKTWVESMMG- 1471 Query 1360 SIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGE 1419 +SDY AFD SQD +L E+ +L++ ++ +Y LKL +GC LG LA+MRF+GE Sbjct 1472 -TDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGE 1530 Query 1420 FCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTA 1479 F TF FNT NM+F+ ++Y ID R + FAGDDM S L+ ++ AT + +L A Sbjct 1531 FGTFFFNTVCNMVFSCMRYHID-RNTPMCFAGDDMYSPGILRVKKDYEAT--LDQLTLKA 1587 Query 1480 VEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGER 1539 + + P+FCGW +SP+GIIK P L+ R K+ L C+ NY EA F YRL E Sbjct 1588 KVHISEEPLFCGWRMSPFGIIKEPNLILDRWKIALRSGNLSLCLVNYAIEASFGYRLSEH 1647 Query 1540 LYTI 1543 LY + Sbjct 1648 LYDV 1651 Range 2: 16 to 365 Score:141 bits(356), Expect:4e-32, Method:Compositional matrix adjust., Identities:104/369(28%), Positives:182/369(49%), Gaps:21/369(5%) Query 5 YRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAP 64 Y N E ++ + +S +LL E E L + F + I +E+LT +G+ + Sbjct 16 YTNGSEESVKAIKELKSKRLL-----ETETRL---DGLFDYYIPDTLREILTGYGMEFSV 67 Query 65 IGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKS 124 F+ H+HP+SKMIENH+LY P+ SS + S +E+K+ L++ + ++ + + Sbjct 68 HSFQGHAHPVSKMIENHMLYRVAPNYFSS--NTLVVSCKESKIKR-LRLKN--ANNRNLN 122 Query 125 LGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMA 184 YN ++ +RY + +FR+ +G + + + +F+HDE+ + S +M Sbjct 123 FTQYNRLVHANHHHRYEN----AFRELDVGNLTNLINKEDQSECIFIHDEVQYWSLDEMQ 178 Query 185 FLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNL 244 ++ ++DRVV + ++P E+ G S P YT+ + +YPDG A Y Q + Sbjct 179 RFLGSLSKVDRVVYSIIYPSEVEAGYSQSLFPEAYTFDLKDRRLVWYPDGKAEGAYTQPV 238 Query 245 ANSKWPFTCSGIQWA-NRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAEEMR 303 + W CS + + R +TKLQ++ AHH+FS +G E ++ ++ Sbjct 239 --NPWLLRCSKTEDSKGRSWTITKLQTIGAHHLFSAIKGSYLTEESYKYDNFTIINPNDV 296 Query 304 LLTKRFDKAVINRS-TVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSFGE 362 L KR K + R+ + Y+ LK +++ SAVAKLR L R+ DE FV + Sbjct 297 LKGKRGGKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSSREENMDEALFVAQLAK 356 Query 363 HFKNFGMRD 371 K+ + D Sbjct 357 QIKDTALYD 365 >RecName: Full=RNA replication protein; AltName: Full=152 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus S (strain Peruvian)] Sequence ID: P22657.1 Length: 353 Range 1: 3 to 353 Score:262 bits(670), Expect:8e-77, Method:Compositional matrix adjust., Identities:150/356(42%), Positives:204/356(57%), Gaps:5/356(1%) Query 1222 GKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFL 1281 G LL+EF++ +P + N + + + + F EK+ KS NHS RS DW D + Sbjct 3 GPFLLKEFLNDVPLKPMHNTRMMAEAKFDFEEKKTQKSAATIENHSNRSCRDWLADMGMV 62 Query 1282 FMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKN 1341 F KSQ CTK F +AKA QT+ CFQH VL RF P +R IE ++YIHSGK Sbjct 63 FSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRFAPYMRYIEKKLNEVLPATFYIHSGKG 122 Query 1342 FFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLK 1401 L+ +V + S F+G ESDY AFD+SQD I+AFE+AL++YLG+ + DY +K Sbjct 123 LEELNKWVIE--SKFEGVCTESDYEAFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIK 180 Query 1402 LTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLK 1461 LG +LG+ AIMRF+GE TFLFNT ANMLFT L+YK+ RI FAGDDMC+ +L Sbjct 181 THLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLKG-DERICFAGDDMCANRALF 239 Query 1462 RRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKE 1521 + R P FCGW LS GI K P+L++ R+ + E L Sbjct 240 IKDTHEGFLKKLKLKAKVDRTNR--PSFCGWSLSSDGIYKKPQLVFERLCIAKETANLAN 297 Query 1522 CVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSLIFEI 1577 C+DNY E +AY+LGER+ + EE+ E Y +R +++ LL +S+ E+ Sbjct 298 CIDNYAIEVSYAYKLGERIKERMSEEELEAFYNCVRVIIKHKHLLKSEIRSVYEEV 353 >RecName: Full=RNA replication protein; AltName: Full=ORF 1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Chrysanthemum virus B] Sequence ID: P37987.1 Length: 260 Range 1: 1 to 245 Score:202 bits(514), Expect:3e-57, Method:Compositional matrix adjust., Identities:110/250(44%), Positives:147/250(58%), Gaps:5/250(2%) Query 1317 PMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVI 1376 P +R IE+ +YIHSGK L+ +V K F+G ESDY AFD+SQD I Sbjct 1 PYMRYIEAKLHEVLPSRFYIHSGKGLEELNEWVIKGK--FEGICTESDYEAFDASQDQYI 58 Query 1377 LAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL 1436 +AFE+AL++YLG+ ++ DY +K LG +LG+ AIMRF+GE TFLFNT ANMLFT L Sbjct 59 VAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFL 118 Query 1437 KYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSP 1496 +Y I H I FAGDDMC+ L ++ + L A P FCGW+L P Sbjct 119 RYNIKDSEH-ICFAGDDMCASERLCIKKEHEG--FLNKLKLKAKVFFVDKPTFCGWHLCP 175 Query 1497 YGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVI 1556 GI K P+L+ R+ + E+ L C+DNY E +AY+LGER + EE+ E Y + Sbjct 176 DGIYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCV 235 Query 1557 RFFVRNSKLL 1566 R ++N KLL Sbjct 236 RIIIKNKKLL 245 >RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Lolium latent virus USA/US1] Sequence ID: B1PS76.1 Length: 1729 Range 1: 933 to 1700 Score:177 bits(449), Expect:4e-43, Method:Compositional matrix adjust., Identities:220/862(26%), Positives:343/862(39%), Gaps:118/862(13%) Query 727 RFVHNRDRAVKLAKSMARGTTG-LLNEFDLEFCKNMVTLSELFPENFSSVVGLRLGFAGS 785 R+ + RA+ LA + G LL DL + +V + P + V G GS Sbjct 933 RYTVDTGRALTLASDIKNNRVGALLQNADLTWKTLLVEYCRMEPTSVPMTV--IHGAGGS 990 Query 786 GKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKG-TACQVHTWETALKKIDGTFMEV 844 GK+ K+LQ + + I P R+L + ++ + V T+E A+ ++ V Sbjct 991 GKS-KLLQDHLNRAELNVVIIVPTRVLQQDWRNKMTEFPSFLVQTYEAAM--MESAPQMV 1047 Query 845 FVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQLRYYS 904 D+ G P GY+ L C F V+ + GD Q YY Sbjct 1048 VFDDYGKLPHGYIDLF--CQFHPSVE-------------------YVILTGDARQSTYYE 1086 Query 905 -AEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKF-FADI 962 D + + +I++ + + Y+ +R Q +L NM E S F F + Sbjct 1087 YNSDAGIRNLPTNIEVFKQYCGY-YINCTHRNKQ---DLANMLGVYSEKMGSTHFTFGNT 1142 Query 963 SSVKTEDYGLILVAKREDKGVF--AGRVPVATVSESQGMTISKRVLICLDQNLFAGGANA 1020 E L+LV K V AG T + QG+T K V I +D + + Sbjct 1143 C----ETGSLLLVPSGTQKTVMGEAGHK-TETYAGCQGITADK-VQIMIDHDTHKSADSH 1196 Query 1021 AIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESP 1080 A++R+ E I FY S Sbjct 1197 MYTALSRA-----------------------------------TEHI-------HFYNSI 1214 Query 1081 LDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAE 1140 + + K + ++ FI + E E + + H+PV + L + Sbjct 1215 AGLNTARFHAKLNLTPYLKTFIQVITERAAAETEPAEYTVQAPTARTHIPVENCSTFLEK 1274 Query 1141 IFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQ 1200 ++ AKE RE + G +N F + N + F H Q D Sbjct 1275 DLEEQRAKEDREVYTQAGATNVF---QTNSPIV--------QCFQHQQPKDGALSIITHA 1323 Query 1201 KRIRKSNWRREKSKFEEFESQGKELLQEFISML--PFEFKVNIKEI-EDGEKSFLEKRKL 1257 KR++ ++ ++++ G L + F + + P E I+++ E E L Sbjct 1324 KRLQYASAEANQAEYRAKLQIGAALWENFKTAMEIPDEPVPFIRDLWEQSEAEVLSTYLS 1383 Query 1258 KSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM-FTEAKAGQTLACFQHIVLFRFG 1316 KSE N R D DW+ + F+++K+Q+ TK K AKAGQT++ F+ V+ +FG Sbjct 1384 KSEMAIKNGKNRQDPDWQDERMFVYLKAQWVTKASKFNLPTAKAGQTISAFKQAVVMKFG 1443 Query 1317 PMLRAIESAFLRSCGDSYYIHS-------GKNFFCLDSF--VTKNASVFDGFSIESDYTA 1367 M R + + D+ I+ K LDS TK F+ + SD+ A Sbjct 1444 AMARYLRR--ITPKPDNIRINCEMQPQDISKWALGLDSHNRPTKQKWNFERPAFASDFEA 1501 Query 1368 FDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNT 1427 FD SQD +L FE ++ V +YL LK+ G L IMR TGE TF NT Sbjct 1502 FDQSQDGAMLHFEALWARHFNVPSSLIEEYLFLKMHAQAPKGYLTIMRLTGEGPTFDANT 1561 Query 1428 FANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEV---- 1483 ++ + +Y+I P+ L+AGDDM + G + + LTA E+ Sbjct 1562 ACSIAYNHTRYEI-PKSCMQLYAGDDMLLDQVPVEKTGFK--NIAAGLKLTAKTEIFEQK 1618 Query 1484 -RKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYT 1542 K+ FC W+++PYG++K P L+ RI + SE L + +D Y EA AY L RL+ Sbjct 1619 RGKWGEFCSWWMTPYGLVKDPITLYHRILLASEIGDLSKKIDAYAIEAEPAYALQGRLFD 1678 Query 1543 ILKEEDFEYHYLVIRFFVRNSK 1564 EE HY IR + K Sbjct 1679 CFNEEQMTAHYGTIRRLIIEGK 1700 Range 2: 50 to 291 Score:65.5 bits(158), Expect:6e-09, Method:Compositional matrix adjust., Identities:62/256(24%), Positives:103/256(40%), Gaps:41/256(16%) Query 54 LLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKM 113 +L K G+ P+ H H K IEN +L V LL + V F +++++K++ L+ Sbjct 50 VLEKLGIGTHPMSLAVHPHAPCKAIENQILN-TVGHLLPKEQPVTFMAMKKSKLN-MLRR 107 Query 114 HSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHD 173 H ++ N I +D RYG D+ + L F+ D Sbjct 108 HPS------RADTFINPIYHPRDNVRYG---LDPDPDQDASITASFLEVKT--STAFMQD 156 Query 174 ELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPD 233 LH+L+P D+ +FET P+++ ++A+ V P+E K S P +Y+ F + P Sbjct 157 TLHYLTPEDLLDIFETSPKLENLIASFVLPVEATRNMK-SLYPDLYSIHYTHGGFQWAPS 215 Query 234 GVASECY--------------------EQNLANSKWPFTCSGIQWA-------NRKIRVT 266 G + Y E+ + P G + KI Sbjct 216 GHLGDAYFHEPWQLYWLRCGSLTRLIEEETTTTVQPPPGFEGEAYTRVRKEVRELKIYAE 275 Query 267 KLQSLFAHHVFSFDRG 282 ++ S+ AHH+F F R Sbjct 276 RVTSIGAHHLFIFSRN 291 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Botrytis virus F NZL/Howitt] Sequence ID: Q9DRA1.1 Length: 1896 Range 1: 1490 to 1876 Score:177 bits(448), Expect:6e-43, Method:Compositional matrix adjust., Identities:120/394(30%), Positives:191/394(48%), Gaps:11/394(2%) Query 1181 QNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVN 1240 ++VF H+ D T KR+R S + + G EL + F +P + Sbjct 1490 RDVFLEHRGDDKATANITYAKRLRFSQRAANERSIAATKVAGSELFEAFTRAIPLPQETF 1549 Query 1241 IKEIEDGEKSFLEKRKLKSEKMWA--NHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEA 1298 + + ++ + L S+ + N++ERSD W L+ LF+K Q K KM ++A Sbjct 1550 NDSLLEECRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQTVKKLEKMGSDA 1609 Query 1299 KAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDG 1358 AGQ++A F+ VL +GP R I+ YIHS + + FV A+ +D Sbjct 1610 TAGQSIASFRAEVLLAWGPYARYIDRRIRALLPPHVYIHSRRTNEDFEKFV---AAHWDH 1666 Query 1359 F--SIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRF 1416 S + DYTA+D+SQD + FE L++ L + Y+ +K ++ G LAIMRF Sbjct 1667 TRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRF 1726 Query 1417 TGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFS 1476 +GE T+LFNT N+ FT KY++ P ++ + GDD S + R G ++L+ F+ Sbjct 1727 SGEVWTYLFNTLGNIAFTYAKYEV-PSVAQV-YGGDDKSINSPITVRTGW--SQLVGKFN 1782 Query 1477 LTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRL 1536 L V P FCGW + P GI+K P+LL+ R + R Y E + + + Sbjct 1783 LVEKPVVGYEPTFCGWRIVPGGIVKDPQLLFWRTRYARIRYDAALWAPGYYDELVLSLKT 1842 Query 1537 GERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLS 1570 +RL + D Y ++RF+ + S+ L L+ Sbjct 1843 SDRLMDHMSPNDLAYLQALVRFYTKLSRRLPSLA 1876 Range 2: 4 to 327 Score:79.0 bits(193), Expect:5e-13, Method:Compositional matrix adjust., Identities:86/351(25%), Positives:140/351(39%), Gaps:35/351(9%) Query 8 PLEIAINKLP-SKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIG 66 PLE A + S D TT+E T R+ +++ LL + G+ Sbjct 4 PLERAFASVTQSFHKDATQGPTTNEYLVARAETQRYAPYAVRKGPAALLAQVGINTIHDS 63 Query 67 FKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLG 126 SHSHP + +P L V + ++N F K+ + + +L Sbjct 64 PLSHSHPACYALNAFHFLKVIPRYLHGKAEV--WGTKDNW---FRKLQAQID-SQTTTLT 117 Query 127 MYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFL 186 N I +D RY V+ C LF+HD L +++P D+ L Sbjct 118 HRNYAITARDHVRYPGT--------VVDHPGSCTA-----GTLFMHDALQYMTPLDVYTL 164 Query 187 FETIPEIDRVVATTVFPIELLFGDKVSK-EPRVYTYKVHGSSFSFYPDGVASECYEQNLA 245 F T PE+ +VAT V P E + D++ P +Y + + PDG ++ Y Q LA Sbjct 165 FATSPEMHSLVATAVIPPESV--DRLPAFWPELYQLAYYEDHLCYAPDGNFADAYNQPLA 222 Query 246 NSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAEEMRLL 305 +W T + + + V S ++HH+F + R H D + ++ L Sbjct 223 AHQW-MTMKSLHGPDFTLSVDVPASRYSHHIFVISK-RPGLPDTHRD----FMCPDLVEL 276 Query 306 TKRF----DKA--VINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLY 350 K F +KA ++ R+ V+ + Y A +K A A ++ R K Y Sbjct 277 PKDFFPGANKADKLLPRTLVNQMVEYAASVKRATIKDATSRTRAYVKDQKY 327 >RecName: Full=RNA replication protein; AltName: Full=150 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Strawberry mild yellow edge virus] Sequence ID: P28897.1 Length: 1323 Range 1: 851 to 1313 Score:165 bits(418), Expect:2e-39, Method:Compositional matrix adjust., Identities:137/490(28%), Positives:222/490(45%), Gaps:48/490(9%) Query 1097 FIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSV 1156 F+ F+ L+ E PE + K H PV + + L +K+A K RE S Sbjct 851 FLKTFLELSREIEIPEAKCQETAPAEATVKTHFPVENPNLVLEPYVEKMAEKFDRELYSK 910 Query 1157 -LGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKF 1215 G SN + P + +FPH QA DD WA + +R+ + +++F Sbjct 911 EYGYSNAIQTED---------PVIQ--LFPHQQAKDDTLMWATIDQRLAITTKSENETEF 959 Query 1216 EEFESQGKELLQEFISML-----PFEFKVNIKEIEDGEKSFLEKRKL-KSEKMWANHSER 1269 + G L + + P F K++ K+ ++K L K N R Sbjct 960 ALKKDIGDLLFINYHRAMKLPKNPIPFD---KDLWQSCKNEVQKTYLSKDVGSIVNGVAR 1016 Query 1270 SDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRS 1329 D D+ ++ LF+KSQ+ K K+ K GQT+A F + +G M R ++R Sbjct 1017 QDPDFPINEIKLFLKSQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMAR-----YMRR 1071 Query 1330 CGDSY-----YIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALL 1384 + Y +I+ K LD + N + F+G + +D+TAFD SQD +L FE+ Sbjct 1072 MREVYQPSNIFINCEKTPADLDEWAKANWN-FEGLAHSNDFTAFDQSQDGAMLQFEVIKA 1130 Query 1385 QYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRR 1444 ++ + + Y+ LK LG L IMR +GE TF NT ++ + KY ++P Sbjct 1131 KFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDV 1190 Query 1445 HRILFAGDDMC---------SLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLS 1495 ++ +AGDD S + +K R G + S LT + F FCGW ++ Sbjct 1191 AQV-YAGDDSAQDRTPVPRPSFNKIKDRLG------LVSKPLTHRQVPGDFATFCGWIIT 1243 Query 1496 PYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLV 1555 P G+IK P L+A +++ R E +Y +A AYRLG+ L+++L ++ H Sbjct 1244 PKGVIKDPLKLYASLQLAIRRGKSHEVALSYAHDAGLAYRLGDDLHSVLTFDEAHAHQCT 1303 Query 1556 IRFFVRNSKL 1565 +R V+ +K+ Sbjct 1304 VRDLVKLNKV 1313 Range 2: 42 to 340 Score:67.4 bits(163), Expect:1e-09, Method:Compositional matrix adjust., Identities:75/322(23%), Positives:123/322(38%), Gaps:41/322(12%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRE 104 +S+ E L + + P + H+H +K IEN +L I +L + V F L+ Sbjct 42 YSVDARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLNIVGHALPK--EPVTFLFLKR 99 Query 105 NKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNK 164 K+ S G+IK + N I+ +D RY E + + + L Sbjct 100 GKL-------RYLSRGRIKDI-FQNQEIEPRDVARY---EHKTIVQKSLLLNT------- 141 Query 165 FPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVH 224 +V ++ D LHFL P + LF +D + AT V P+E F S+ P +YT + Sbjct 142 --RVAYISDTLHFLRPRYIIDLFSQNVFLDVLYATVVLPVEASFKHP-SQNPAIYTINYN 198 Query 225 GSSFSFYPDGVASECYEQNLANSKW----------------PFTCSGIQWANRKIRVTKL 268 F + P Y + W P + + + +L Sbjct 199 YGGFQYLPGNHGGGAYSHEFEDLDWLKYGKFIYRWVDYRTDPISGKRVGTPKELVVTCQL 258 Query 269 -QSLFAHHVFSFDRGR-ACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYM 326 +SL A+H+F F RG F K + ++ + ++ + L Y+ Sbjct 259 VESLGANHLFIFKRGDLKTPRVRTFAKDKSVTFPDLFYPEEENANFPVDAELATKLFLYV 318 Query 327 ACLKTANAASAVAKLRQLEKRD 348 LKT + KLRQL + D Sbjct 319 KTLKTVTSQDVHGKLRQLLRSD 340 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Indian citrus ringspot virus K1] Sequence ID: Q918W3.1 Length: 1658 Range 1: 1259 to 1643 Score:162 bits(410), Expect:2e-38, Method:Compositional matrix adjust., Identities:111/392(28%), Positives:188/392(47%), Gaps:19/392(4%) Query 1183 VFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISML-----PFEF 1237 +FPH QA D+ FW + RI+ + F G L + + P F Sbjct 1259 LFPHQQAKDETLFWKTIDARIKITTPEENVRNFNMASDIGDILFLNYKEAMCLPADPIPF 1318 Query 1238 KVNIKEIEDGEKSFLEKRKL-KSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM-F 1295 + + + D ++ +++ L K AN ++R D D+ + LF+KSQ+ K K+ Sbjct 1319 Q---QSLWDSCQAEVQQTYLSKPLAALANAAQRQDPDFDSNKIQLFLKSQWVKKVEKLGC 1375 Query 1296 TEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASV 1355 + K GQT+A F + +G M R + + C I+ N + S+V +N Sbjct 1376 LKIKPGQTIASFMQQTVMLYGTMARYMRRIRISLCPSHIMINCETNPTQISSWVRENWD- 1434 Query 1356 FDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMR 1415 F G S E+D+ AFD SQD +L FE+ ++ + +E Y LK LG++AIMR Sbjct 1435 FSGQSHENDFEAFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMR 1494 Query 1416 FTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSF 1475 +GE TF NT ++ + +Y + P+ L+AGDD + L + + + Sbjct 1495 LSGEGPTFDANTECSIAYNHTRYFV-PKGCAQLYAGDDSACAAPLSEKPSFQ--HISPEL 1551 Query 1476 SLTAVEEVRK-----FPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEA 1530 SL + ++R + FCGW ++P G IK+P L+A + + L++ NY + Sbjct 1552 SLKSKAKIRSQTKGDYATFCGWLITPKGFIKNPTQLYASWLLAKHNKDLQDVARNYALDL 1611 Query 1531 IFAYRLGERLYTILKEEDFEYHYLVIRFFVRN 1562 AY+L + LY +L E+ ++H L++R V++ Sbjct 1612 RIAYQLKDELYELLSPEELDHHQLLVREMVKH 1643 Range 2: 33 to 327 Score:82.8 bits(203), Expect:3e-14, Method:Compositional matrix adjust., Identities:89/323(28%), Positives:136/323(42%), Gaps:38/323(11%) Query 34 KTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSS 93 K +E NR+ +I P+ + L G+ P K H+H K IEN LLY+ V +LL Sbjct 33 KNVEHVNRY---AIPPDAADALEHLGIGTNPFSVKLHTHGACKAIENQLLYV-VGTLLPK 88 Query 94 FKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVI 153 + F L++ K++ F+K F N I+ +D RY D S Sbjct 89 ERVTMLF-LKKAKLN-FMKRCPKFQD------IFLNQHIEPRDVSRYCDFNVQS------ 134 Query 154 GLRDQCLTRNKFP-KVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKV 212 T P ++ D LHF+ D+ LF P +D + AT V P+E + + Sbjct 135 -------TSTSIPTHTAYISDTLHFMDRKDLVRLFINSPNLDTLYATIVLPVEAAY-RQP 186 Query 213 SKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWA---NRKIRVT--- 266 S+ P +Y F + P G Y ++ +W I W N+ I++T Sbjct 187 SRYPDLYQINYDFDGFQYIPGGHGGGAYHHEFSHLEW-LDVGHIHWRGPDNKDIQLTITA 245 Query 267 -KLQSLFAHHVFSFDRG--RACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLS 323 ++SL A+H+F F RG R LL + R + K F++A I + + + Sbjct 246 QMIESLGANHLFCFRRGNLRTPRVRTFGRDTQVLLPKIFRPVDKNFNRA-IPLTLANKML 304 Query 324 TYMACLKTANAASAVAKLRQLEK 346 Y + T VAK RQL K Sbjct 305 LYAKSINTVTFRDVVAKTRQLMK 327 >RecName: Full=RNA replication protein; AltName: Full=194 kDa protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Shallot virus X] Sequence ID: Q04575.1 Length: 1718 Range 1: 1191 to 1613 Score:154 bits(390), Expect:3e-36, Method:Compositional matrix adjust., Identities:122/438(28%), Positives:198/438(45%), Gaps:17/438(3%) Query 1126 KCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFP 1185 K H+PV + L + + K+ RE S EK P + +FP Sbjct 1191 KTHIPVANDKVQLEGKIEAMEDKDTRELWS---------GEEKTNLMQTQDPVVQ--LFP 1239 Query 1186 HHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISML--PFEFKVNIKE 1243 H QA D+ F + +RIR + + + + G L + + + P E + K Sbjct 1240 HQQAKDEALFKITIGERIRMATPEQNAKQLRHTLNAGDLLFEAYAQFMKVPKETQPFDKR 1299 Query 1244 IEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQT 1303 + + + L R D D+ + LF KSQ+ K K+ KAGQT Sbjct 1300 LWTHCRQLALRTYLSKPTSNLQQGARQDPDFPDNAIALFNKSQWVKKLEKVGARFKAGQT 1359 Query 1304 LACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIES 1363 ++ F+ V+ M + + D+ +I + ++FV FD + S Sbjct 1360 ISAFKQEVVLLTTTMALYLRKKREQHQPDNVFIMCERTPEQFNAFVMTKWD-FDRPNYTS 1418 Query 1364 DYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTF 1423 DYT +D SQD L FE+ ++LGV ++ Y +K LG+LAIMR + E TF Sbjct 1419 DYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPTF 1478 Query 1424 LFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEV 1483 NT N+ + L++++ R +AGDD+ + + R G + + FSL A V Sbjct 1479 DANTECNIAYDALRFRLGDDV-RASYAGDDLVRDKACEERAGWVYSESL--FSLKAKPLV 1535 Query 1484 RKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTI 1543 P FCGW L+ +GI+KSP L+ +++ + E +Y + +FAYRLG+++Y I Sbjct 1536 TNKPDFCGWRLTRHGIVKSPIQLYQSLQLALRLGKIDEVKRSYAIDYLFAYRLGDKIYDI 1595 Query 1544 LKEEDFEYHYLVIRFFVR 1561 E++ E H LV R ++ Sbjct 1596 FDEDELEKHQLVTRTLIK 1613 Range 2: 41 to 269 Score:74.3 bits(181), Expect:1e-11, Method:Compositional matrix adjust., Identities:68/252(27%), Positives:103/252(40%), Gaps:35/252(13%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRE 104 FS+T + L + G+T +P SH+H K+IEN L I + L ++V L+ Sbjct 41 FSVTTPEALTLERFGITTSPFATTSHTHAADKIIENDCLTI-IGHYLPKREAVTLIQLKR 99 Query 105 NKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNK 164 +K+ + S N + KD RYG I + C N Sbjct 100 SKIHLLGRQPS--------QDNFQNYCHEPKDVLRYG-----------ITHPNSCPVVNT 140 Query 165 FPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVH 224 + L D LHF+SP + LF P+++R+ AT V PIE S P VY + + Sbjct 141 --EYAVLADTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEAQH-RLPSLFPDVYRLEYY 197 Query 225 GSSFSFYPDGVASECYEQNLANSKW---------PFTCSGIQ--WA-NRKIRVTKLQSLF 272 F++ P G Y + KW +T S I W + + K+++ Sbjct 198 KDHFAYMPGGHGGGAYVHSYGTLKWLDTAQVGPVDYTKSSITNPWPITDYLSIEKIETKA 257 Query 273 AHHVFSFDRGRA 284 AHH+ R RA Sbjct 258 AHHIMFIQRTRA 269 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Botrytis virus X NZL/Howitt] Sequence ID: Q6YNQ7.1 Length: 1413 Range 1: 899 to 1340 Score:152 bits(383), Expect:2e-35, Method:Compositional matrix adjust., Identities:131/475(28%), Positives:219/475(46%), Gaps:54/475(11%) Query 1106 EEEVDPEEV-VGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKRE-FQSVLGLSNQF 1163 EEE P++ D E K H+PV + + + ++ K+ RE F + G +N Sbjct 899 EEEYQPDDTPANDNPTEPELTKTHLPVENDNVFFEPLVEQCTDKDTRELFTAEHGKTNL- 957 Query 1164 LDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRI----RKSNWRREKSKFEEFE 1219 + + ++ + FPH QA DD ++ RI R +N R E Sbjct 958 --AQTSSLEVQL--------FPHQQAKDDALMTETMKARITTSTRDANLR-ELHDTNALS 1006 Query 1220 SQGKELLQEFISM----LPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWK 1275 E +F+ + +PF + + E+++L K + N + R D D+ Sbjct 1007 GLLFEFYADFMKVPKDPMPFNPTLWAESRARAERTYLSK----TAAQILNGANRQDPDFP 1062 Query 1276 LDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYY 1335 + LF+KSQ+ K K+ + KAGQT++ F+ V+ +L + +LR+C +S Sbjct 1063 DNFVALFLKSQWVKKLEKVGMQFKAGQTISSFKQQVV-----LLTTTLALYLRACRNS-- 1115 Query 1336 IHSGKNFFCLDSFVTKNASVFDGF---------SIESDYTAFDSSQDHVILAFEMALLQY 1386 H N F + K ++ F+ F + SDYT +D SQD + L FE+ ++ Sbjct 1116 -HQPDNVFIM---CEKTSNQFNDFVKDWNFERDNYTSDYTQYDKSQDGLFLNFELRKARH 1171 Query 1387 LGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHR 1446 GV + Y +K +L IMR +GE TF NT N+ + ++++ + Sbjct 1172 FGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPTFDANTECNIAYDAARFQLSDVK-- 1229 Query 1447 ILFAGDDMCSLSSLKRRRGERAT--RLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPK 1504 +AGDD+ R ERA+ + F+L A V + P FCGW L+ +GI+K+PK Sbjct 1230 ACYAGDDLAR----DRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNPK 1285 Query 1505 LLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFF 1559 LW +++ + LK+ V +Y + AY LG+++Y I EE+ YH +R Sbjct 1286 QLWQSMQLGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQATVRLM 1340 Range 2: 3 to 256 Score:72.0 bits(175), Expect:5e-11, Method:Compositional matrix adjust., Identities:73/282(26%), Positives:106/282(37%), Gaps:40/282(14%) Query 12 AINKLPSKQSDQLLSLTTDEI-----EKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIG 66 A+ L S SD +EI ++ T F + + LL K G+ P Sbjct 3 ALRSLASDLSDPTTKAAANEIAFKHFSDGIKSTKLSFPYKVDESTAILLEKEGVLTNPFS 62 Query 67 FKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHS------VFSHG 120 H+H KM+EN L N+V LK+H+ F G Sbjct 63 TTLHTHAAEKMLENRTL---------------------NEVGKKLKVHTGPFTFIQFKTG 101 Query 121 KIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSP 180 K+ +G + D Y + S F D + +V LHD LHFLSP Sbjct 102 KLGHVGRGHNQGDQIINYAREAKDLSRFE-----TLDTAVVPPVHNRVALLHDTLHFLSP 156 Query 181 FDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKV-HGSSFSFYPDGVASEC 239 +A LF P + + AT V P+E L + S P YT + F++ P G A Sbjct 157 RQLAQLFHHNPNLHLLYATLVLPVEALH-NLPSLNPHAYTLEYFSNGDFAYMPGGHAGSG 215 Query 240 YEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR 281 Y + W I+ + + + K S AHH+F+ R Sbjct 216 YYHSAETLHW-LRAGQIKLGHFSLSLNKEDSFGAHHIFTVTR 256 >RecName: Full=RNA replication protein; AltName: Full=147 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [White clover mosaic virus (strain O)] Sequence ID: P15402.1 Length: 1294 Range 1: 809 to 1289 Score:151 bits(381), Expect:3e-35, Method:Compositional matrix adjust., Identities:132/504(26%), Positives:228/504(45%), Gaps:38/504(7%) Query 1090 DKASNDLFIMPFINLAEEEVDPEEVVGD-VIQPVEWFKCHVPVFDTDPTLAEIFDKVAAK 1148 +K + ++ F++ EE E + + PV+ H P + + + K Sbjct 809 EKLDSTPYLKTFLDCVREEKMNEIIAAEEPPTPVQAPTTHFPKVNPTTVIESYVHDLPEK 868 Query 1149 EKRE-FQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSN 1207 RE F G SN ++ + + + FPH QA D+ +WA ++ R++ ++ Sbjct 869 HDREIFSETHGHSNA---IQTDNPVVQL--------FPHQQAKDETLYWATIEARLQCTS 917 Query 1208 WRREKSKFEEFESQGKELLQEFISML-----PFEFKVNIKEI--EDGEKSFLEKRKLKSE 1260 +F G L + + P F ++ + ++ E ++L+K S Sbjct 918 SEENLKEFHLKHDIGDILFLNYKQAMNLPQDPIPFNPDLWTLCRQEIENTYLKK----SA 973 Query 1261 KMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM-FTEAKAGQTLACFQHIVLFRFGPML 1319 N + R D+ LF+KSQ+ K K+ + KAGQT+A F + +G M Sbjct 974 AALVNAATRQSPDFDSHAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMA 1033 Query 1320 RAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAF 1379 R + + C +++ +SF+ + F+ +D+TAFD SQD IL F Sbjct 1034 RYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWN-FNRTCFSNDFTAFDQSQDGSILQF 1092 Query 1380 EMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYK 1439 E+ ++ + ++ Y+++K LG+L+IMR +GE TF NT AN+ +T K+ Sbjct 1093 EVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFN 1152 Query 1440 IDPRRHRILFAGDDMC--SLSSLKRRRG--ERATRLMKSFSLTAVEEVRKFPMFCGWYLS 1495 I P ++AGDDM ++S+K E +L K + + F FCGW +S Sbjct 1153 I-PCDAAQVYAGDDMSIDYVASVKPSFNMIEHLMKL-KGKPVFNTQTQGDFAEFCGWTIS 1210 Query 1496 PYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLV 1555 P GIIK P+ + I++ E +Y + FAY+LG+ L+ + E + E+H L Sbjct 1211 PKGIIKKPEKMNMSIELQKNINKFHEVKRSYALDHAFAYQLGDELHELYNENEAEHHQLA 1270 Query 1556 IRFFVRNSKLLTGLSKSL-IFEIG 1578 R S +L G + +L I + G Sbjct 1271 TR-----SLILAGQATALDILDYG 1289 >RecName: Full=RNA replication protein; AltName: Full=147 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [White clover mosaic virus (strain M)] Sequence ID: P09498.1 Length: 1294 Range 1: 893 to 1289 Score:151 bits(381), Expect:4e-35, Method:Compositional matrix adjust., Identities:116/409(28%), Positives:196/409(47%), Gaps:25/409(6%) Query 1183 VFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISML-----PFEF 1237 +FPH QA D+ +WA ++ R++ ++ +F G L + + P F Sbjct 893 LFPHQQAKDETLYWATIEARLQCTSSEENLKEFHLKHDIGDILFLNYKQAMNLPQDPIPF 952 Query 1238 KVNIKEI--EDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM- 1294 ++ + ++ E ++L+K S N + R D+ LF+KSQ+ K K+ Sbjct 953 NPDLWTLCKQEIENTYLKK----SAAALVNAATRQSPDFDSHAIALFLKSQWVKKTEKIG 1008 Query 1295 FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAS 1354 + KAGQT+A F + +G M R + + C +++ +SF+ + Sbjct 1009 CLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWN 1068 Query 1355 VFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIM 1414 F+ +D+TAFD SQD IL FE+ ++ + ++ Y+++K LG+L+IM Sbjct 1069 -FNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDIIEGYIQIKTHAKIFLGTLSIM 1127 Query 1415 RFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMC--SLSSLKRRRG--ERATR 1470 R +GE TF NT AN+ +T K+ I P ++AGDDM ++S+K E + Sbjct 1128 RLSGEGPTFDANTEANIAYTHTKFNI-PCDAAQVYAGDDMSIDYVASVKPSFNMIEHLMK 1186 Query 1471 LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEA 1530 L K + + F FCGW +SP GIIK P+ + I++ E +Y + Sbjct 1187 L-KGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMSIELQKNINKFHEVKRSYALDH 1245 Query 1531 IFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSL-IFEIG 1578 FAY+LG+ L+ + E + E+H L R S +L G + +L I + G Sbjct 1246 AFAYQLGDELHELYNESEAEHHQLATR-----SLILAGQATALDILDYG 1289 >RecName: Full=RNA replication protein; AltName: Full=186 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Narcissus mosaic virus] Sequence ID: P15095.1 Length: 1643 Range 1: 1157 to 1573 Score:150 bits(380), Expect:5e-35, Method:Compositional matrix adjust., Identities:125/441(28%), Positives:201/441(45%), Gaps:43/441(9%) Query 1136 PTLAEIFDKVAAKEKRE-FQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVT 1194 P L + +K+ KE RE F G SN + E + ++ F H QA D+ Sbjct 1157 PLLEPLVEKLTDKEAREIFSPAFGHSNA-IQTEDSVVQL----------FQHQQAKDETL 1205 Query 1195 FWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISML-------PFE---FKVNIKEI 1244 +WA + R+ S +F G L + ++ PFE +K++ E+ Sbjct 1206 YWATIDTRLAISTPEANLREFNMKRDIGDILFMNYAKLMCLPPEPVPFEERLWKISADEV 1265 Query 1245 EDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFT-EAKAGQT 1303 + S K N + R D+ + LF+KSQ+ K K+ T + K GQT Sbjct 1266 RNTYIS-------KPIGNLVNAASRQSPDFPKNKIALFLKSQWVKKTEKLGTLKVKPGQT 1318 Query 1304 LACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIES 1363 +A F + +G M R + R D+ +I+ LD F+ K+ F + + Sbjct 1319 IASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFI-KSQWDFSRPAHTN 1377 Query 1364 DYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTF 1423 D+TAFD SQD +L FE+ ++ + E Y+ +KL LG+L IMR +GE TF Sbjct 1378 DFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTF 1437 Query 1424 LFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERAT--RLMKSFSLTAVE 1481 NT ++ + ++ I ++ +AGDDM +L R E+ + RL K LT+ Sbjct 1438 DANTECSIAYNATRFHITDDTAQV-YAGDDM----ALDRVSIEKDSFNRLEKQLKLTSKP 1492 Query 1482 EVRK-----FPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRL 1536 K + FCGW ++P GIIK + A I++ + +KE +Y + +AY+L Sbjct 1493 MFPKQVKGDYAEFCGWVMTPAGIIKHSLKMHASIQLQKKINNIKESARSYALDLRYAYKL 1552 Query 1537 GERLYTILKEEDFEYHYLVIR 1557 G+ L L E + +YH +R Sbjct 1553 GDELQEHLNEVEADYHQQSVR 1573 Range 2: 41 to 223 Score:60.8 bits(146), Expect:1e-07, Method:Compositional matrix adjust., Identities:50/208(24%), Positives:92/208(44%), Gaps:28/208(13%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFS--- 101 ++++ ++ + L G+T+ P ++H+H K+IEN +L I L ++ F Sbjct 41 YALSNDEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPKHSCTMLFLKRSK 100 Query 102 LRENKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLT 161 LR + + LK VF N ++ KD +RY + + R R+ + Sbjct 101 LRYMRRAAILK--DVF----------LNKDVEPKDLFRY---DRDTIRSRLQDIDT---- 141 Query 162 RNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTY 221 K+ ++ D LHF+S ++ LFE P+++ ++AT V P+E L + S P +Y+ Sbjct 142 -----KIAYMSDTLHFMSRREIVQLFEDSPKLETLLATVVLPVEALHK-RTSLYPSLYSI 195 Query 222 KVHGSSFSFYPDGVASECYEQNLANSKW 249 F + P Y +W Sbjct 196 NYSAKGFEYIPGNHGGGSYFHPYTTLEW 223 >RecName: Full=RNA replication protein; AltName: Full=176 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Papaya mosaic virus] Sequence ID: P20951.1 Length: 1547 Range 1: 1073 to 1530 Score:150 bits(378), Expect:8e-35, Method:Compositional matrix adjust., Identities:138/476(29%), Positives:218/476(45%), Gaps:34/476(7%) Query 1103 NLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKRE-FQSVLGLSN 1161 L EE P E PVE + H+ D + +K+ K +RE F G SN Sbjct 1073 TLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHSN 1132 Query 1162 QFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ 1221 C PF + +F H QA DD WA ++ R+ SN + ++ E Sbjct 1133 ---------CVQTEDPFIQ--MFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRPV 1181 Query 1222 GKELLQEFISML-------PFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDW 1274 G+ L + + + PFE + + + +K++L K E M N R D+ Sbjct 1182 GEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSK----PENMIKNGMARQSPDY 1237 Query 1275 KLDHAFLFMKSQYCTKEGKM-FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDS 1333 + LF+KSQ+ K K+ + K GQT+A F + FG M R + +R Sbjct 1238 DPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRR--MREVFQP 1295 Query 1334 YYIHSGKNFFC--LDSFVTKNAS--VFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGV 1389 +I L S+ F G S+ +D+TAFD SQD +L FE+ ++ + Sbjct 1296 AHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSI 1355 Query 1390 SKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILF 1449 ++ YL +K LG+LAIMR TGE TF NT N+ FT K+ I P L+ Sbjct 1356 PEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNI-PEGTAQLY 1414 Query 1450 AGDDMC--SLSSLKRRRGERATRL-MKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLL 1506 AGDD L +L+ +L ++S A+++ + FCG+ ++P G+IK PK L Sbjct 1415 AGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKL 1474 Query 1507 WARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRN 1562 A + ++ +K + +Y + AY+ + L+ +L EE+ +YHY +R V++ Sbjct 1475 HASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKYHYETVRSIVKS 1530 Range 2: 27 to 347 Score:87.0 bits(214), Expect:2e-15, Method:Compositional matrix adjust., Identities:89/344(26%), Positives:146/344(42%), Gaps:37/344(10%) Query 31 EIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSL 90 +I+ T++ T + ++ + L K G+ P K+H+H +K IE Sbjct 27 DIKLTIKETKTYNPYAHPVAVADSLEKLGIETNPFAVKAHTHAAAKTIE----------- 75 Query 91 LSSFKSVAFFSLRENKVD-SFLKMHSV--FSHGKIKSLGMYNAIIDGKDKYRYGDVEFSS 147 L +K V+F+ +EN F+K + F G + NA I+ KD RY DV+ Sbjct 76 LDMYKIVSFYLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARY-DVD--- 131 Query 148 FRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELL 207 L D+ +T F+ D LHFL + +F++ P++ + AT V P E L Sbjct 132 ------TLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEAL 185 Query 208 FGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRK----- 262 S P +Y + H F + P G A Y +W +WA+ K Sbjct 186 HRLH-SLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEW-IKVGRFKWADEKGLTHM 243 Query 263 IRVTKLQSLFAHHVFSFDRGR-ACNEFNHFDKPSCLLAEEMRLLTKRFDKAV-INRSTVS 320 + L++ A+H+F F RGR E F + + L K+F+ + I ++T Sbjct 244 VTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQ 303 Query 321 SLSTYMACLKTANAASAVAKLRQL----EKRDLYPDELNFVYSF 360 L Y+ +K AK+RQL E +D P E+ + ++ Sbjct 304 QLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNY 347 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus x (strain HB)] Sequence ID: Q07630.1 Length: 1456 Range 1: 1058 to 1451 Score:149 bits(375), Expect:2e-34, Method:Compositional matrix adjust., Identities:113/403(28%), Positives:191/403(47%), Gaps:23/403(5%) Query 1183 VFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFISML-----P 1234 +F H QA D+ WA + R++ SN ++S F EF S+ G L + + P Sbjct 1058 LFSHQQAKDETLLWATIDARLKTSN---QESNFREFLSKRDIGDVLFLNYQRAMGLPKEP 1114 Query 1235 FEFKVNIKEI--EDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEG 1292 F + E + + +L K K N + R D+ + +F+KSQ+ TK Sbjct 1115 IPFSQEVWEACAHEVQSKYLSKSKCN----LINGTVRQSPDFDENKIMVFLKSQWVTKVE 1170 Query 1293 KM-FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTK 1351 K+ + K GQT+A F + FG M R + +I+ + ++ Sbjct 1171 KLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALS 1230 Query 1352 NASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSL 1411 N + F S+ +DYTAFD SQD +L FE+ ++ + +E Y+ +K LG+L Sbjct 1231 NWN-FTRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTL 1289 Query 1412 AIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD--MCSLSSLKRRRGERAT 1469 +IMR TGE TF NT N+ FT K+ I P ++AGDD + + +K+ Sbjct 1290 SIMRLTGEGPTFDANTECNIAFTHTKFDI-PAGTAQVYAGDDSALDCVPEIKQSFHRLED 1348 Query 1470 R-LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLF 1528 + L+KS + ++ +P FCGW ++P G++K P L +K+ + LK+C D+Y Sbjct 1349 KLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKCQDSYEI 1408 Query 1529 EAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSK 1571 + +AY + L+ + E+ + H L R +++ + L + Sbjct 1409 DLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPR 1451 Range 2: 41 to 339 Score:73.2 bits(178), Expect:2e-11, Method:Compositional matrix adjust., Identities:80/321(25%), Positives:132/321(41%), Gaps:41/321(12%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRE 104 ++ T E L G+ P + H+H +K IEN LL + + SLL + V F L+ Sbjct 41 YAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEV-LGSLLPQ-EPVTFMFLKP 98 Query 105 NKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNK 164 K++ F++ + +IK + +N I+ +D RY ++ +I + T Sbjct 99 RKLN-FMRRNP-----RIKDI-FHNVAIEPRDVARYP-------KETIIHKLAEIKT--- 141 Query 165 FPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVH 224 ++ D LHFL P + F+ P++ + AT V P+E F + S P +Y+ K Sbjct 142 --DTAYISDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKME-STHPNIYSLKYF 198 Query 225 GSSFSFYPDGVASECYEQNLAN--------SKWPFTCSGI---------QWANRKIRVTK 267 G F + P Y ++ KW G+ Q + V Sbjct 199 GDGFQYIPGNHGGGAYHHEFSHLQSVKVGKIKWRDPKDGLLGHLNYTHEQVDTHTVTVQL 258 Query 268 LQSLFAHHVFSFDRGRACN-EFNHFDKPSCLLAEEMRLLTKRFD-KAVINRSTVSSLSTY 325 +S A+H++ RG E F +P + L K + K I + T+ L Y Sbjct 259 QESFAANHLYCIRRGNMMTPEVRTFGQPDRYVLPPQIFLPKVHNCKKPILKKTMMQLFLY 318 Query 326 MACLKTANAASAVAKLRQLEK 346 + +K A AK+RQL K Sbjct 319 VRTVKVAKNCDIFAKIRQLIK 339 >RecName: Full=RNA replicase polyprotein [Kennedya yellow mosaic virus (strain Jervis Bay)] Sequence ID: P36304.1 Length: 1874 Range 1: 799 to 1827 Score:148 bits(373), Expect:4e-34, Method:Compositional matrix adjust., Identities:257/1098(23%), Positives:422/1098(38%), Gaps:168/1098(15%) Query 591 EPEEIKLPKRRRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDK-GLSHEM 649 P + +PK N+C+ A++ L I+ L L E + D LL E D G+S ++ Sbjct 799 PPTPLPMPK----NNCLLTAVAPSLHINPHRLWTSL-QEVLPDSLLSNSEIDSVGMSTDL 853 Query 650 IEEVLITKGLSMVYTSD-------FKEMAVLNRKYGVNGK--MYCT---IKGNHCELSSK 697 + + V S+ + + Y NG Y I G++ SS+ Sbjct 854 LTALSHLFNFQAVVHSERGDILFGLQSAKTVIHIYHTNGPPAHYSPPPKIIGSNSPPSSQ 913 Query 698 E-----CFIRLLKEGGEAQMSNENLNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNE 752 + +R +G S+ F + A L +M G G+++ Sbjct 914 QHPLEQAALRFKYQGSHLPFSS----------FHSFTTSVQHAKNLISNMKNGFDGVMST 963 Query 753 FDLEFC--------KNMVTLSELFPENFSSVVGL--RLGFAGSGKTHKVLQWINYTPSVK 802 + + + L + V + GFAG GKT + ++ P Sbjct 964 IEPSIRHQPGHSPREKFIALDAMIDLARPKTVSMFHLAGFAGCGKTKPLQSLLSTRPFHS 1023 Query 803 RMFISPRRMLADEVEPQLKGTACQVH---TWETALKKIDGTFMEVFVDEIGLYPPGYLTL 859 +P L +E + + A Q TWE++L K + +DEI P GYL L Sbjct 1024 FRVSTPTTELRNEWKKDMNLPASQAFRFCTWESSLLKQTKILV---IDEIYKLPRGYLDL 1080 Query 860 LQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHDID- 918 C L LEL + GDPLQ Y+S T+ H + Sbjct 1081 ---C------------ILADPCLEL------VIILGDPLQGEYHS---TSPHSSNHQLQS 1116 Query 919 ---LMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFADISSVKTEDYGLILV 975 ++ I H Y + YR +L ++P+ + S+ + + T + ++ Sbjct 1117 ETTRLLPFIDH-YCWWTYRVPSHIADLFSVPS-FNRSEGHYQMAVRTADSYTPGHFNLVN 1174 Query 976 AKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFI 1035 + V P T+S SQG+T RV I LD++ + +VA+TRS VG +F+ Sbjct 1175 SVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTLVALTRSTVGVEFL 1234 Query 1036 LKGNSLKEVQR---MAQKTIW-QFIIEGKSIPMERIVNM--------------------- 1070 SL M + I+ Q I S P RI ++ Sbjct 1235 GDIGSLSGTNNSSDMFSRAIYRQPINLSSSFP--RIFHLLPLLNKPISRRSTRLIGSHSP 1292 Query 1071 ---NPGASFYESPLDVGNSSIQD-KASNDLF-----------IMPFINLA-EEEVDPEEV 1114 NP + P + S QD SN +F +P L + E+ P ++ Sbjct 1293 IFHNPRLTNIHLPPHIPTSYSQDFVVSNPIFQGQADPRLDTHFLPPTRLPLQSELLPAQL 1352 Query 1115 VGDVIQPVEWFKCHVPVFDTDP-----TLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKN 1169 +P + F + P P LA F E +E S QF ++ Sbjct 1353 -SQTTKPTDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRP 1411 Query 1170 ---GCKIDILPFARQNVFPHHQASDDVTFWA-GVQKRIR--KSNWRREKSKFEE------ 1217 C+ L A+ H S D T + KR+R KS+ S + Sbjct 1412 FSLSCQPSSLIAAK------HSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQL 1465 Query 1218 FESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLD 1277 F + K + + PF + + I + + L + + ANHS RSD DW+ Sbjct 1466 FFNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKT--QATLVANHS-RSDPDWRHT 1522 Query 1278 HAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPM--LRAIESAFLRSCGDSYY 1335 +F KSQ+ + +F KA QTLA V+ GP+ + I A R Y Sbjct 1523 AVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRP--PHLY 1580 Query 1336 IHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQL 1395 H GK+ L ++ + + + +DYTAFD SQ + E ++ L + Sbjct 1581 THCGKSPADLSAWCQTHLT--GQIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQ 1638 Query 1396 DYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANM--LFTQLKYKIDPRRHRILFAGDD 1453 ++ LK + + G L MR TGE T+ N+ N+ + +Q K P ++ +GDD Sbjct 1639 LHVHLKTNVATQFGPLTCMRLTGEPGTYDDNSDYNLAVIHSQFDMKDIP----VMVSGDD 1694 Query 1454 MCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMM 1513 + AT+ + L E P+FCG+Y G I++P L++++ + Sbjct 1695 SLIDRQPPLAQSWEATKRL--LHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIA 1752 Query 1514 SERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSL 1573 + + + + +YL E ++LG+ L+T+L E Y +F R+S K+L Sbjct 1753 IDDEAIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCRHSP---PHEKAL 1809 Query 1574 I--FEIGEGIGSKWLSST 1589 + FE+ + + SK SST Sbjct 1810 LSSFELPDSVISKISSST 1827 Range 2: 4 to 330 Score:69.3 bits(168), Expect:4e-10, Method:Compositional matrix adjust., Identities:72/354(20%), Positives:135/354(38%), Gaps:48/354(13%) Query 10 EIAINKLPS-KQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFK 68 ++A++ L S D L + + +L + + + + + + Q L K G+ + G Sbjct 4 QLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSFGSS 63 Query 69 SHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLGMY 128 H HP K +E HLL+ L + SV F ++ K + + F H ++ Sbjct 64 PHPHPAHKTLETHLLFTHWMHLCTQPSSVLF--MKPQKFMKLQRKNKFFQH-------LH 114 Query 129 NAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFE 188 N + D R+ L F +F+HD L + P + LF Sbjct 115 NYRLTPTDSVRFPSTS-------------PHLPNTPF---VFMHDALMYYQPEQILHLFH 158 Query 189 TIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSK 248 +P++ + + V P E F +S P +YT+ + G + + P+G ++ Y Q + Sbjct 159 QVPQLTNLFCSLVTPPESHF-THLSLMPDLYTFTLKGQTLHYTPEGHSAGSYNQPITALS 217 Query 249 WPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRG----------RACNEFNH-------- 290 W + I N + +T L+S H RG R+ F+ Sbjct 218 W-LKINSILSPNLNLSITILESWGPLHSILIQRGLPLPDPKLLVRSLPPFSRSPDPETDL 276 Query 291 --FDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLR 342 F P + + L++ ++ S ++L TY ++T + +R Sbjct 277 VSFQVPKSVELPQATFLSQPLRHRLVPESVYNALFTYTRAVRTLRVSDPAGFVR 330 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X (strain CP)] Sequence ID: P22591.1 Length: 1456 Range 1: 1058 to 1451 Score:147 bits(370), Expect:8e-34, Method:Compositional matrix adjust., Identities:111/403(28%), Positives:191/403(47%), Gaps:23/403(5%) Query 1183 VFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFISML-----P 1234 +F H +A D+ WA + R++ SN ++S F EF S+ G L + + P Sbjct 1058 LFSHQEAKDETLLWATIDARLKTSN---QESNFREFLSKRDIGDVLFLNYQKAMGLPKEP 1114 Query 1235 FEFKVNIKEI--EDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEG 1292 F + E + + +L K K N + R D+ + +F+KSQ+ TK Sbjct 1115 IPFSQEVWEACAHEVQSKYLSKSKCN----LINGTVRQSPDFDENKIMVFLKSQWVTKVE 1170 Query 1293 KM-FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTK 1351 K+ + K GQT+A F + FG M R + +I+ + ++ Sbjct 1171 KLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALS 1230 Query 1352 NASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSL 1411 N + F S+ +DYTAFD SQD +L FE+ ++ + +E Y+ +K LG+L Sbjct 1231 NWN-FTRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTL 1289 Query 1412 AIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD--MCSLSSLKRRRGERAT 1469 +IMR TGE TF NT N+ FT K+ I P ++AGDD + + +K+ Sbjct 1290 SIMRLTGEGPTFDANTECNIAFTHTKFDI-PAGTAQVYAGDDSALDCVPEVKQSFHRLED 1348 Query 1470 R-LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLF 1528 + L+KS + ++ +P FCGW ++P G++K P L +K+ + L++C D+Y Sbjct 1349 KLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELRKCQDSYEI 1408 Query 1529 EAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSK 1571 + +AY + L+ + E+ + H L R +++ + L + Sbjct 1409 DLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPR 1451 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X] Sequence ID: P09395.1 Length: 1456 Range 1: 1057 to 1451 Score:145 bits(367), Expect:2e-33, Method:Compositional matrix adjust., Identities:111/404(27%), Positives:190/404(47%), Gaps:23/404(5%) Query 1182 NVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFISML----- 1233 +F H QA D+ WA + R++ SN +++ F EF S+ G L + + Sbjct 1057 QLFSHQQAKDETLLWATIDARLKTSN---QETNFREFLSKKDIGDVLFLNYQKAMGLPKE 1113 Query 1234 --PFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKE 1291 PF +V + + +L K K N + R D+ + +F+KSQ+ TK Sbjct 1114 RIPFSQEVWEACAHEVQSKYLSKSKCN----LINGTVRQSPDFDENKIMVFLKSQWVTKV 1169 Query 1292 GKM-FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVT 1350 K+ + K GQT+A F + FG M R + +I+ + ++ Sbjct 1170 EKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWAL 1229 Query 1351 KNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGS 1410 N + F S+ +DYTAFD SQD +L FE+ ++ + +E Y+ +K LG+ Sbjct 1230 NNWN-FSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGT 1288 Query 1411 LAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD--MCSLSSLKRRRGERA 1468 L+IMR TGE TF NT N+ +T K+ I P ++AGDD + + +K Sbjct 1289 LSIMRLTGEGPTFDANTECNIAYTHTKFDI-PAGTAQVYAGDDSALDCVPEVKHSFHRLE 1347 Query 1469 TR-LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYL 1527 + L+KS + ++ +P FCGW ++P G++K P L +K+ + LK+C D+Y Sbjct 1348 DKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKCQDSYE 1407 Query 1528 FEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSK 1571 + +AY + L+ + E+ + H L R +++ + L + Sbjct 1408 IDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPR 1451 Range 2: 41 to 417 Score:78.6 bits(192), Expect:6e-13, Method:Compositional matrix adjust., Identities:93/400(23%), Positives:158/400(39%), Gaps:64/400(16%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRE 104 ++ T E L G+ P + H+H +K IEN LL + + S+L + V F L+ Sbjct 41 YAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEV-LGSILPQ-EPVTFMFLKP 98 Query 105 NKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNK 164 K++ + + +IK + +N I+ +D RY ++ +I + T Sbjct 99 RKLNYMRR------NPRIKDI-FHNVAIEPRDVARYP-------KETIIDKLTEITT--- 141 Query 165 FPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVH 224 ++ D LHFL P + F+ P++ + AT V P+E F + S P +Y+ K Sbjct 142 --DTAYIGDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKME-STHPNIYSLKYF 198 Query 225 GSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRK------------------IRVT 266 G F + P Y ++ +W I+W + K + V Sbjct 199 GDGFQYIPGNHGGGAYHHEFSHLQW-LKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQ 257 Query 267 KLQSLFAHHVFSFDRGRACN-EFNHFDKPSCLLAEEMRLLTKRFD-KAVINRSTVSSLST 324 +S A+H++ RG E F +P + L K + K I + T+ L Sbjct 258 LQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFL 317 Query 325 YMACLKTANAASAVAKLRQLEKR---DLYPD-ELNFVYSFGEHFKNF------------G 368 Y+ +K A AK+RQL K D Y EL ++ S+ E + G Sbjct 318 YVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGG 377 Query 369 MRDDFDVSVLQWVKDKFCQVM-----PHFIAASFFEPTEF 403 + V W+++K Q+ + A F P +F Sbjct 378 LLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDF 417 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X (strain X3)] Sequence ID: P17779.1 Length: 1456 Range 1: 1057 to 1451 Score:145 bits(367), Expect:2e-33, Method:Compositional matrix adjust., Identities:114/411(28%), Positives:192/411(46%), Gaps:37/411(9%) Query 1182 NVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFISML----- 1233 +F H QA D+ WA + R++ SN +++ F EF S+ G L + + Sbjct 1057 QLFSHQQAKDETLLWATIDARLKTSN---QEANFREFLSKKDIGDVLFLNYQKAMGLPKE 1113 Query 1234 --PFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKE 1291 PF +V + + +L K K N + R D+ + +F+KSQ+ TK Sbjct 1114 RIPFSQEVWEACAHEVQSKYLSKSKCN----LINGTVRQSPDFDENKIMVFLKSQWVTKV 1169 Query 1292 GKM-FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVT 1350 K+ + K GQT+A F + FG M R ++R ++ K F Sbjct 1170 EKLGLPKIKPGQTIAAFYQQTVMLFGTMAR-----YMRWFRQAF---QPKEVFINCETTP 1221 Query 1351 KNASV-------FDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLT 1403 ++ SV F S+ +DYTAFD SQD +L FE+ ++ + +E Y+ +K Sbjct 1222 EDMSVWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTN 1281 Query 1404 LGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD--MCSLSSLK 1461 LG+L+IMR TGE TF NT N+ +T K+ I P ++AGDD + + +K Sbjct 1282 AQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDI-PAGTAQVYAGDDSALDCVPEVK 1340 Query 1462 RRRGERATR-LMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK 1520 + L+KS + ++ +P FCGW ++P G++K P L +K+ + LK Sbjct 1341 HSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELK 1400 Query 1521 ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSK 1571 +C D+Y + +AY + L+ + E+ + H L R +++ + L + Sbjct 1401 KCQDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPR 1451 Range 2: 41 to 417 Score:80.5 bits(197), Expect:1e-13, Method:Compositional matrix adjust., Identities:94/400(24%), Positives:159/400(39%), Gaps:64/400(16%) Query 45 FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRE 104 ++ T E L G+ P + H+H +K IEN LL + + S+L + V F L+ Sbjct 41 YAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEV-LGSILPQ-EPVTFMFLKP 98 Query 105 NKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNK 164 K++ + + +IK + +N I+ +D RY ++ +I + T Sbjct 99 RKLNYMRR------NPRIKDI-FHNVAIEPRDVARYP-------KETIIDKLTEITT--- 141 Query 165 FPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVH 224 + ++ D LHFL P + F+ P++ + AT V P+E F + S P +Y+ K Sbjct 142 --ETAYISDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKME-STHPNIYSLKYF 198 Query 225 GSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRK------------------IRVT 266 G F + P Y A+ +W I+W + K + V Sbjct 199 GDGFQYIPGNHGGGAYHHEFAHLQW-LKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQ 257 Query 267 KLQSLFAHHVFSFDRGRACN-EFNHFDKPSCLLAEEMRLLTKRFD-KAVINRSTVSSLST 324 +S A+H++ RG E F +P + L K + K I + T+ L Sbjct 258 LQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFL 317 Query 325 YMACLKTANAASAVAKLRQLEKR---DLYPD-ELNFVYSFGEHFKNF------------G 368 Y+ +K A AK+RQL K D Y EL ++ S+ E + G Sbjct 318 YVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGG 377 Query 369 MRDDFDVSVLQWVKDKFCQVM-----PHFIAASFFEPTEF 403 + V W+++K Q+ + A F P +F Sbjct 378 LLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDF 417 >RecName: Full=RNA replication protein; AltName: Full=152 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Foxtail mosaic virus] Sequence ID: P22168.1 Length: 1335 Range 1: 924 to 1311 Score:144 bits(362), Expect:6e-33, Method:Compositional matrix adjust., Identities:122/405(30%), Positives:195/405(48%), Gaps:44/405(10%) Query 1183 VFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISML-----PFEF 1237 F H QA D+ FWA V+KR+ S + ++F+ G L + + P +F Sbjct 924 AFQHQQAKDETLFWATVEKRLAASTPKDNWTEFKTKRPLGDVLWLAYKRAMVLPDEPIKF 983 Query 1238 KVNI--KEIEDGEKSFLEK--RKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGK 1293 + ++ +K++L K LK+ + + D DW + +F+KSQ+ K K Sbjct 984 NPELWWACADEVQKTYLSKPIHALKNGIL----RQSPDFDW--NKLQIFLKSQWVKKIDK 1037 Query 1294 MF-TEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSY-----YIHSGKNFFCLDS 1347 + + AGQT+A F + FG M R ++R D+Y I+ KN + Sbjct 1038 IGKIDVNAGQTIAAFYQPTVMLFGTMAR-----YMRRIRDTYQPGEILINCEKNQKHISK 1092 Query 1348 FVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCR 1407 +V N + + +D+TA+D SQD +L FE+ + + E Y+ LKL Sbjct 1093 WVESNWN-HRLPAYTNDFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMF 1151 Query 1408 LGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGER 1467 LG+LAIMR TGE TF NT N+ +T +++I P+ ++AGDD C+L+ R ER Sbjct 1152 LGTLAIMRLTGEGPTFDANTECNIAYTHARFEI-PKNVAQMYAGDD-CALNC---RPVER 1206 Query 1468 AT--RLMKSFSLTAV-----EEVRKFPMFCGWYLSPYGIIKSPK-----LLWARIKMMSE 1515 + L++ F+L + ++V +P FCG ++P G +K P L A+ K SE Sbjct 1207 QSFLPLVEKFTLKSKPKVFEQKVGSWPEFCGNLITPRGYLKDPMKLQHCLQLAQRKKPSE 1266 Query 1516 RQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 LK+ +NY + + Y LG+ LY I E HY +R + Sbjct 1267 PGSLKDVAENYAMDLLPTYELGDALYEIFDERQMNAHYQSVRTLI 1311 Range 2: 26 to 319 Score:75.1 bits(183), Expect:7e-12, Method:Compositional matrix adjust., Identities:86/322(27%), Positives:128/322(39%), Gaps:37/322(11%) Query 31 EIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSL 90 +I+ + T R +SI +++L K+ + P K H H SK E L Y + Sbjct 26 QIKDLFKETTRCNPYSIPQAGRKVLEKYAIPYNPYSLKLHPHAASKAFEVSL-YEAASNY 84 Query 91 LSSFKS--VAFFSLRENKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSF 148 L S S V F + K+ F + G + NA I +D RY Sbjct 85 LPSTSSTPVTFMFTKPGKLRFFRR------RGHVDKF--VNADIVPRDLARYP------- 129 Query 149 RDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLF 208 RD V + T + F + D LH + +F P+++ ++AT V P E + Sbjct 130 RDTVYSYLPEITTTHAF-----IGDTLHHFGEDFLVEVFSRSPKLEVLLATMVLPPEAFY 184 Query 209 GDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKL 268 + S P VYT F + P G++ YE + W T + I ++ Sbjct 185 RME-SLHPSVYTLLYRDDRFLYLPGGLSGGEYEHRYKDLNW-LTFGTVTHGGITITGERI 242 Query 269 QSLFAHHVFSFDRGR-ACNEFNHFDKPSCLLAEEMRLLTKRFDKAVIN------RSTVSS 321 ++ A+H+F F RGR A +F FD P E M LL K F A N R + Sbjct 243 ETKAANHLFLFRRGRLATPKFRSFDMP-----EPMVLLPKVFRPAKYNVQKPIPREKANK 297 Query 322 LSTYMACLKTANAASAVAKLRQ 343 Y+ + A AKLRQ Sbjct 298 WLMYVKSIGNATIRDVWAKLRQ 319 >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (Australian isolate)] Sequence ID: P20128.1 Length: 1844 Range 1: 976 to 1771 Score:138 bits(348), Expect:3e-31, Method:Compositional matrix adjust., Identities:206/852(24%), Positives:326/852(38%), Gaps:127/852(14%) Query 781 GFAGSGKTHKVLQWINYTPSVKRMFIS-PRRMLADEVEPQLKGTACQVH--------TWE 831 GFAG GKT+ + Q + T K +S P L E + TA ++H TWE Sbjct 976 GFAGCGKTYPIQQLLK-TKLFKDFRVSCPTTELRTEWK-----TAMELHGSQSWRFNTWE 1029 Query 832 TALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNI 891 +++ K + +DEI P GYL L + L LEL + Sbjct 1030 SSILKSSRILV---IDEIYKMPRGYLDL---------------SILADPALEL------V 1065 Query 892 RCFGDPLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDE 951 GDPLQ Y+S + + L + Y + YR Q L + Sbjct 1066 IILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI------ 1119 Query 952 SKFSRKFFADISSVKT-EDYGLILVAKREDKGVFAGR-VPVATVSESQGMTISKRVLICL 1009 F+ + I SV T +D +L F T+S SQG+T +I L Sbjct 1120 HSFN-AWQGIIGSVSTPQDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVL 1178 Query 1010 DQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMER-IV 1068 D + +VA+TRS+ G F+ G S ++ I M+R Sbjct 1179 DNYTKWLSSANGLVALTRSRSGVQFM--GPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFP 1236 Query 1069 NMNPGASFYESPLDVGNSSIQDKA--------SNDLFIMPFINLAEE-----------EV 1109 ++ P SPL + + S + + P I L+ + + Sbjct 1237 SLFPQLKLITSPLTTRSPKLNGATPSASPTHRSPNFHLPPHIPLSYDRDFVTVNPTLPDQ 1296 Query 1110 DPEEVVGDVIQPVEWFKCH--VPVFDTDPTLA----------------EIFDKVAA---- 1147 PE + P H +P T P ++ E FD +AA Sbjct 1297 GPETRLDTHFLPPSRLPLHFDLPPAITPPPISTSVDPPQAKASPVYPGEFFDSLAAFFLP 1356 Query 1148 ---KEKREFQSVLGLSNQFLDMEKN---GCKIDILPFARQNVFPHHQASDDVTFWAGVQK 1201 RE SNQF ++ C+ L A+ P+H D A + K Sbjct 1357 AHDPSTREVLHKDQSSNQFPWFDRPFSLSCQPSSLISAKHA--PNH---DPTLLPASINK 1411 Query 1202 RIRKSNWRREKSKFEEFESQGKELLQEFISM-----------LPFEFKVNIKEIEDGEKS 1250 R+R +R ++ + LQ F S+ +PF ++ + I E + Sbjct 1412 RLR---FRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNITVPFNPELFAECISLNEYA 1468 Query 1251 FLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHI 1310 L K++ ++ RSD DW+ +F K+Q+ +G +F KA QTLA Sbjct 1469 QLSS---KTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDY 1525 Query 1311 VLFRFGPMLRAIESAFLRSCGDSY-YIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFD 1369 V+ GP+ + + F S+ Y H GK L + ++ + I +DYTAFD Sbjct 1526 VILVLGPV-KKYQRIFDNVDRPSHIYSHCGKTPNQLRDWCQEHLT-HSTPKIANDYTAFD 1583 Query 1370 SSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFA 1429 SQ + E ++ L + ++ LK + + G L MR TGE T+ NT Sbjct 1584 QSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDY 1643 Query 1430 NMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMF 1489 N+ +Y + I+ +GDD L R + ++K L E+ P+F Sbjct 1644 NLAVIYSQYDVG--SCPIMVSGDDSLIDHPLPTRHDWPS--VLKRLHLRFKLELTSHPLF 1699 Query 1490 CGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDF 1549 CG+Y+ P G I++P L+ ++ + + L + +YL E + LGE L+ +L E Sbjct 1700 CGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHV 1759 Query 1550 EYHYLVIRFFVR 1561 +Y FF R Sbjct 1760 QYQSACFDFFCR 1771 >RecName: Full=RNA replication protein; AltName: Full=156 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Plantago asiatica mosaic virus] Sequence ID: Q07518.1 Length: 1385 Range 1: 894 to 1375 Score:133 bits(335), Expect:1e-29, Method:Compositional matrix adjust., Identities:136/503(27%), Positives:226/503(44%), Gaps:44/503(8%) Query 1082 DVGNSSIQDKASNDLFIMPFINLAEEEVDPE-EVVGDVIQPVEWFKCHVPVFDTDPTLAE 1140 + +S+ +K ++ F++L E+ E + D +PV H PV + TL + Sbjct 894 NAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDD 953 Query 1141 IFDKVAAKEKRE-FQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGV 1199 +++ K RE F S G +N C P + +F H QA D+ W + Sbjct 954 FKEELRDKFDREIFTSDRGHTN---------CVQTDDPTTQ--LFSHQQAKDEALLWEMI 1002 Query 1200 QKRIRKSNWRREKSKFEEFESQGKELLQEFISM--LPFE---FKVNI--KEIEDGEKSFL 1252 + R++ S +F + G L + LP E F ++ + E+ + ++L Sbjct 1003 RARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYL 1062 Query 1253 EKR--KLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFT-EAKAGQTLACFQH 1309 +K +LK + R D+ +F+KSQ+ K K+ E K GQT+A FQ Sbjct 1063 KKTMAQLKGGE------RRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQ 1116 Query 1310 IVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFD 1369 + +G M R + ++ I+ K L +V N F S +D+TAFD Sbjct 1117 HAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL-NYWDFSKPSYANDFTAFD 1175 Query 1370 SSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFA 1429 SQD +L FE+ +Y + + YL +KL+ LG+L+IMR TGE TF NT Sbjct 1176 QSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTEC 1235 Query 1430 NMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTA-----VEEVR 1484 N+ +T ++ I P ++AGDD C+++ + + A L +L A +E Sbjct 1236 NIAYTHTRFDI-PEGTAQIYAGDD-CAIAQVCPEKPSFAL-LKNRIALQAKPAYTPQERG 1292 Query 1485 KFPMFCGWYLSPYGIIKSPKLLWARIKMMSE------RQLLKECVDNYLFEAIFAYRLGE 1538 ++ FCG+ ++P G+IK P L A +++ R + V NY +A AY LG+ Sbjct 1293 QWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGD 1352 Query 1539 RLYTILKEEDFEYHYLVIRFFVR 1561 L +L H + +R V+ Sbjct 1353 DLQDLLSPHQAHLHQVTVRDLVK 1375 >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (isolate TYMC)] Sequence ID: P28477.1 Length: 1844 Range 1: 976 to 1771 Score:130 bits(327), Expect:9e-29, Method:Compositional matrix adjust., Identities:206/857(24%), Positives:322/857(37%), Gaps:137/857(15%) Query 781 GFAGSGKTHKVLQWINYTPSVKRMFIS-PRRMLADE--VEPQLKGT-ACQVHTWETALKK 836 GFAG GKT+ + Q + T K +S P L E +L G+ + + +TWE+++ K Sbjct 976 GFAGCGKTYPIQQLLK-TKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILK 1034 Query 837 IDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGD 896 + +DEI P GYL L + L LEL + GD Sbjct 1035 SSRILV---IDEIYKMPRGYLDL---------------SILADPALEL------VIILGD 1070 Query 897 PLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSR 956 PLQ Y+S + + L + Y + YR Q L + F+ Sbjct 1071 PLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI------HSFN- 1123 Query 957 KFFADISSVKT-EDYGLILVAKREDKGVFAGR-VPVATVSESQGMTISKRVLICLDQNLF 1014 + I SV T D +L F T+S SQG+T +I LD Sbjct 1124 AWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTK 1183 Query 1015 AGGANAAIVAIT--RSKV---GFDFILKG-------------NSLKEVQRMAQKTIWQF- 1055 + +VA+T RS V G + G NSL + R Q Sbjct 1184 WLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLK 1243 Query 1056 -IIEGKSIPMERIVNMNPGAS----------------FYESPLDVGNSSIQDKASN---D 1095 I + ++ P AS Y+ NS++ D+ D Sbjct 1244 LITSPLTTRGPKLNGATPSASPTHRSPNFHLPPHIPLSYDRDFVTVNSTLPDQGPETRLD 1303 Query 1096 LFIMPFINLA--------------EEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEI 1141 +P L VDP + + P E+F +LA Sbjct 1304 THFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYPGEFFD----------SLAAF 1353 Query 1142 FDKVAAKEKREFQSVLGLSNQFLDMEKN---GCKIDILPFARQNVFPHHQASDDVTFWAG 1198 F RE SNQF ++ C+ L A+ P+H D A Sbjct 1354 FLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHA--PNH---DPTLLPAS 1408 Query 1199 VQKRIRKSNWRREKSK-----------FEEFESQGKELLQEFISMLPFEFKVNIKEIEDG 1247 + KR+R +R S + F S + ++ S +PF ++ + I Sbjct 1409 INKRLR---FRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLN 1465 Query 1248 EKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACF 1307 E + L K++ ++ RSD DW+ +F K+Q+ +G +F KA QTLA Sbjct 1466 EYAQLSS---KTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522 Query 1308 QHIVLFRFGPM---LRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESD 1364 V+ GP+ R ++A + Y H GK L + ++ + I +D Sbjct 1523 HDYVILVLGPVKKYQRIFDNA---DRPPNIYSHCGKTPNQLRDWCQEHLT-HSTPKIAND 1578 Query 1365 YTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFL 1424 YTAFD SQ + E ++ L + ++ LK + + G L MR TGE T+ Sbjct 1579 YTAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD 1638 Query 1425 FNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVR 1484 NT N+ +Y + I+ +GDD L R + ++K L E+ Sbjct 1639 DNTDYNLAVIYSQYDVG--SCPIMVSGDDSLIDHPLPTRHDWPS--VLKRLHLRFKLELT 1694 Query 1485 KFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTIL 1544 P+FCG+Y+ P G I++P L+ ++ + + L + +YL E + LGE L+ +L Sbjct 1695 SHPLFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLL 1754 Query 1545 KEEDFEYHYLVIRFFVR 1561 E +Y FF R Sbjct 1755 PETHVQYQSACFDFFCR 1771 >RecName: Full=Genome polyprotein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase; Contains: RecName: Full=RNA replication protein; Contains: RecName: Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat protein [Maize rayado fino virus isolate Costa Rica] Sequence ID: Q91TW9.1 Length: 2027 Range 1: 1285 to 1764 Score:130 bits(327), Expect:1e-28, Method:Compositional matrix adjust., Identities:129/503(26%), Positives:219/503(43%), Gaps:52/503(10%) Query 1137 TLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKN---GCKIDILPFARQNVFPHHQASDDV 1193 +LA +F E +E +SNQF ++K G + L + P H + D Sbjct 1285 SLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSL------LAPLHNSKHDP 1338 Query 1194 TFW-AGVQKRIRKSNWRREKSKF-----EE------FESQGKELLQEFISMLPFEFKVNI 1241 T A + KR+R +R ++ + +E +E+ + + + PF+ + Sbjct 1339 TLLPASIGKRLR---FRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYA 1395 Query 1242 KEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAG 1301 + I E + L K++ ++ RSD DW+ +F K+Q+ EG +F KA Sbjct 1396 ECINLNEFAQLSS---KTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKAC 1452 Query 1302 QTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSI 1361 QTLA V+ GP+ + R + Y+H+G F + + A + + Sbjct 1453 QTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWC--RAHLTPAVKL 1510 Query 1362 ESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFC 1421 +DYTAFD SQ + FE + L + E ++ LK + + G L MR TGE Sbjct 1511 ANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPG 1570 Query 1422 TFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVE 1481 T+ NT N+ L+Y + ++ +GDD S R ++ + + +LT + Sbjct 1571 TYDDNTDYNIAVLHLEYAVG--STPLMVSGDDSLLDSEPPVR--DQWSAIAPMLALTFKK 1626 Query 1482 EVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLY 1541 E ++ FCG+Y+ G ++SP L+A++ + + + + + YL E + G+ + Sbjct 1627 ERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFW 1686 Query 1542 TILKEEDFEYHYLVIRFFVR----NSKLLTGLSK------SLIFEIGEGIGSKWLSSTST 1591 TIL E Y FF R +K++ L + SL FE G KW S + Sbjct 1687 TILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFE-----GLKWASHSVY 1741 Query 1592 A----SSRRSNLQTSKLMLSRPQ 1610 A S RR L +S+ S P+ Sbjct 1742 ALMNSSHRRQLLHSSRRPRSLPE 1764 Range 2: 19 to 309 Score:79.0 bits(193), Expect:5e-13, Method:Compositional matrix adjust., Identities:75/321(23%), Positives:123/321(38%), Gaps:37/321(11%) Query 17 PSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISK 76 P+ D + + + + L + + +SI E L G+ ++ G +H HP+ K Sbjct 19 PTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHPHPVHK 78 Query 77 MIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSV---FSHGKIKSLGMYNAIID 133 IE HLL P+ V F K + F K+ S F+H + N + Sbjct 79 TIETHLLLDVWPNYARGPSDVMFI-----KPEKFAKLQSRQPNFAH-------LINYRLV 126 Query 134 GKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEI 193 KD RY L D C T +F+HD L + +P +A LF P++ Sbjct 127 PKDTTRYPSTS--------TNLPD-CET-------VFMHDALMYYTPGQIADLFFLCPQL 170 Query 194 DRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTC 253 ++ A+ V P E F +S P +Y ++ GS + P+G + Y Q + W Sbjct 171 QKIYASVVVPAESSF-THLSLHPEIYRFRFQGSDLVYEPEGNPAANYTQPRSALDW-LQT 228 Query 254 SGIQWANRKIRVTKLQSLFAHHVFSFDRGRA----CNEFNHFDKPSCLLAEEMRLLTKRF 309 +G + VT L S H RGR + F P + L + Sbjct 229 TGFTVGHEFFSVTLLDSFGPVHSLLIQRGRPPVFQAEDIASFRVPDAVALPAPASLHQDL 288 Query 310 DKAVINRSTVSSLSTYMACLK 330 ++ R +L Y+ ++ Sbjct 289 RHRLVPRKVYDALFNYVRAVR 309 >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus] Sequence ID: P10358.2 Length: 1844 Range 1: 1331 to 1771 Score:122 bits(306), Expect:3e-26, Method:Compositional matrix adjust., Identities:120/470(26%), Positives:195/470(41%), Gaps:46/470(9%) Query 1109 VDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDMEK 1168 VDP + + P E+F +LA F RE SNQF ++ Sbjct 1331 VDPPQAKASPVYPGEFFD----------SLAAFFLPAHDPSTREILHKDQSSNQFPWFDR 1380 Query 1169 N---GCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSK----------- 1214 C+ L A+ P+H D A + KR+R +R S Sbjct 1381 PFSLSCQPSSLISAKHA--PNH---DPTLLPASINKRLR---FRPSDSPHQITADDVVLG 1432 Query 1215 FEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDW 1274 + F S + ++ S +PF ++ + I E + L K++ ++ RSD DW Sbjct 1433 LQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSS---KTQSTIVANASRSDPDW 1489 Query 1275 KLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPM---LRAIESAFLRSCG 1331 + +F K+Q+ +G +F KA QTLA V+ GP+ R ++A Sbjct 1490 RHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIFDNA---DRP 1546 Query 1332 DSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSK 1391 + Y H GK L + ++ + I +DYTAFD SQ + E ++ L + Sbjct 1547 PNIYSHCGKTPNQLRDWCQEHLT-HSTPKIANDYTAFDQSQHGESVVLEALKMKRLNIPS 1605 Query 1392 EFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAG 1451 ++ LK + + G L MR TGE T+ NT N+ +Y + I+ +G Sbjct 1606 HLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYDVG--SCPIMVSG 1663 Query 1452 DDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIK 1511 DD L R + ++K L E+ P+FCG+Y+ P G I++P L+ ++ Sbjct 1664 DDSLIDHPLPTRHDWPS--VLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCKLM 1721 Query 1512 MMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVR 1561 + + L + +YL E + LGE L+ +L E +Y FF R Sbjct 1722 IAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCR 1771 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Grapevine fleck virus isolate MT48] Sequence ID: Q8UZB6.1 Length: 1949 Range 1: 1508 to 1884 Score:122 bits(305), Expect:3e-26, Method:Compositional matrix adjust., Identities:96/384(25%), Positives:163/384(42%), Gaps:12/384(3%) Query 1186 HHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFI-----SMLPFEFKVN 1240 H+Q D A + KR+R + + + ++ G L S P F Sbjct 1508 HNQKQDPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFDPV 1567 Query 1241 IKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKA 1300 + E F + + AN + RSD DW+ +F K+Q+ E +FT KA Sbjct 1568 LFASCIAENDFAQLTSKTQATIQAN-AFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKA 1626 Query 1301 GQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFS 1360 QTLA ++ GP+ + R YIH+G+ L + + + Sbjct 1627 CQTLALMHDYLILVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLT--PSVH 1684 Query 1361 IESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEF 1420 + +DYTAFD SQ + E ++ + + F ++ +K + C+ G L MR TGE Sbjct 1685 LANDYTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITGEP 1744 Query 1421 CTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAV 1480 T+ NT N+ +Y + R +L +GDD SL L F+L Sbjct 1745 GTYDDNTDYNLAILYTQYLL--HRTPVLVSGDD--SLVDRVPPMNPSWPALAPLFALKPK 1800 Query 1481 EEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERL 1540 E F +FCG+++ P G +++P+ L+A++ + E L E + +Y+ E LG+ L Sbjct 1801 PETSPFGLFCGYFVGPAGAVRAPRALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSL 1860 Query 1541 YTILKEEDFEYHYLVIRFFVRNSK 1564 ++++ E Y R++ Sbjct 1861 WSLIPPELVIYQSACFDLICRHAS 1884 Range 2: 128 to 436 Score:87.8 bits(216), Expect:1e-15, Method:Compositional matrix adjust., Identities:81/333(24%), Positives:128/333(38%), Gaps:34/333(10%) Query 20 QSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIE 79 Q D + S + +L + + +++ P L + G+ G +SH HPI K IE Sbjct 128 QKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYGHQSHPHPIHKTIE 187 Query 80 NHLLY------ICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLGMYNAIID 133 HLL+ +PS + K F LR + + +K S F H + N I+ Sbjct 188 THLLHEHWANRATLPSTVMFMKRSKFDKLRVSNA-ALVKSASNFLH-------LLNPILT 239 Query 134 GKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEI 193 +D RY + L D + + F+H L + SP +A LF P + Sbjct 240 ARDADRYTH----------LPLPDTLPSTPLY----FMHHSLMYFSPSQIAGLFLAAPFL 285 Query 194 DRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTC 253 +R+ A+ V P E G P +Y Y+ G + +G S Y Q L ++W T Sbjct 286 ERLYASLVLPAESTIGSH-PFFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTATQW-LTT 343 Query 254 SGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNH----FDKPSCLLAEEMRLLTKRF 309 S I + + VT L+S F+ H RG E P +L Sbjct 344 SSITAGDLHLTVTVLESWFSVHSILITRGVRPLELPRDIISLPSPDAVLLPNPSAFDIPL 403 Query 310 DKAVINRSTVSSLSTYMACLKTANAASAVAKLR 342 ++ R SL Y+ ++T +R Sbjct 404 RSRLVPRDVCESLFVYVRAVRTLRTTDPAGFIR 436 >RecName: Full=RNA replicase polyprotein [Eggplant mosaic virus] Sequence ID: P20126.2 Length: 1839 Range 1: 1392 to 1767 Score:121 bits(304), Expect:4e-26, Method:Compositional matrix adjust., Identities:106/391(27%), Positives:171/391(43%), Gaps:29/391(7%) Query 1186 HHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFI--------SMLP 1234 H ASD ++KR+R +R S + S G+ L S+LP Sbjct 1392 HKPASDPTLLPGSIKKRLR---FRASSSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLP 1448 Query 1235 FEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKM 1294 F+ ++ + I + + L + + ANH +RSD DW+L +F K+Q+ + + Sbjct 1449 FQPELFSECICINDYAQLSSKT--QATIVANH-QRSDPDWRLTAVRIFAKAQHKVNDASI 1505 Query 1295 FTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAS 1354 F+ KA QTLA ++ GP+ + + Y H GK L + + S Sbjct 1506 FSGWKACQTLALMHGYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHLS 1565 Query 1355 VFDGFS-IESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAI 1413 G S I +DYTAFD SQ + E ++ L + + LK ++ + G L Sbjct 1566 ---GSSYIANDYTAFDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFGPLTC 1622 Query 1414 MRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDD--MCSLSSLKRRRGERATRL 1471 MR TGE T+ N+ N+ +Y ++ H IL +GDD +C L Sbjct 1623 MRLTGEPGTYDDNSDYNLAVIYSQYSLN--GHPILISGDDSVLCGTPP----PSPLWPTL 1676 Query 1472 MKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAI 1531 K L E P+FCG+Y+SP+G ++P L+A++ + + + L + +YL E Sbjct 1677 KKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFAKLMICVDDKSLHDKKLSYLSEFS 1736 Query 1532 FAYRLGERLYTILKEEDFEYHYLVIRFFVRN 1562 + G+ + +IL Y V FF RN Sbjct 1737 TGHLAGDLVTSILPSHLLPYQSAVHDFFCRN 1767 Range 2: 54 to 250 Score:66.2 bits(160), Expect:3e-09, Method:Compositional matrix adjust., Identities:57/226(25%), Positives:90/226(39%), Gaps:31/226(13%) Query 59 GLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFS 118 G+ + +G H HPI K +E LL+ +L +V F ++ +K ++ F Sbjct 54 GIPNSGLGVTPHPHPIHKTVETFLLFNHWHALARLPSTVMF--MKPSKFQKLAALNPKFQ 111 Query 119 HGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPK--VLFLHDELH 176 + N + D RY + FP + F+HD L Sbjct 112 E-------LINFRLTAADTTRYPSTSLT------------------FPSNSICFMHDALM 146 Query 177 FLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVA 236 + SP + LF P ++ + + + P E F D +S P +YTYK+ G + + P+ Sbjct 147 YFSPAQIVDLFTQSPALETLYCSLIVPPESHFTD-LSLFPEIYTYKISGQTLHYIPENHH 205 Query 237 SECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRG 282 S Y Q L W S I + + VTKL+S H RG Sbjct 206 SGSYNQPLQAPSW-LKISSILSPSLALSVTKLESWGPVHSILIQRG 250 Range 3: 965 to 1217 Score:48.9 bits(115), Expect:6e-04, Method:Compositional matrix adjust., Identities:69/290(24%), Positives:104/290(35%), Gaps:55/290(18%) Query 781 GFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQV---HTWETALKKI 837 GFAG GKTH + + + +P P L E + ++ TA V TWE++L K Sbjct 965 GFAGCGKTHPIQKLLQTSPFHDFRISCPTNELRSEWKRDMQPTAENVWRFSTWESSLLKH 1024 Query 838 DGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDP 897 + +DEI P GYL L + L L L + GDP Sbjct 1025 SEILV---IDEIYKLPRGYLDL---------------SILADPTLSL------VIILGDP 1060 Query 898 LQLRYYSAEDTNLLDKTHDIDLMIKTIKHK-------YLFQGYRFGQWFQELVNMPTRVD 950 LQ Y+S H + + + H+ Y F +R + L + Sbjct 1061 LQGEYHSTSP-------HSSNHFLPSEVHRFKSYIDCYCFWSHRIPKQIASLFGVVCHNT 1113 Query 951 ESKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLD 1010 F R + + K + G A + V+ ++ T I LD Sbjct 1114 NEGFVRALTSHPPNSKNLTNATNTALSLQQMGHHAITISARRVTFTEAHT------ILLD 1167 Query 1011 QNLFAGGANAAIVAITRSKVGFDFI----LKGNSLKE----VQRMAQKTI 1052 ++ N +VA+TRS+ G F+ L NS Q + Q TI Sbjct 1168 RHTNLLSPNNCLVALTRSRTGVYFVGNLHLASNSFGTNYMFSQALCQGTI 1217 >RecName: Full=RNA replicase polyprotein [Erysimum latent virus] Sequence ID: P35928.1 Length: 1748 Range 1: 1252 to 1675 Score:117 bits(294), Expect:6e-25, Method:Compositional matrix adjust., Identities:113/442(26%), Positives:193/442(43%), Gaps:33/442(7%) Query 1137 TLAEIFDKVAAKEKREFQSVLGLSNQF--LDMEKN-GCKIDILPFARQNVFPHHQASDDV 1193 TLA F E +E + S QF L+++ + C+ L AR H SD Sbjct 1252 TLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISAR-----HQPGSDST 1306 Query 1194 TFWAGVQKRIRKSNWRREKSKFEEFESQ---GKELLQEFISM--------LPFEFKVNIK 1242 A + KR+R +R + ++ S G L + + + LPF + ++ Sbjct 1307 LLPASLHKRLR---FRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLE 1363 Query 1243 EIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQ 1302 I + + L K++ ++ RSD DW+ +F KSQ+ +G +F KA Q Sbjct 1364 CIAVNDYAQLSS---KTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQ 1420 Query 1303 TLACFQHIVLFRFGPMLRAIESAFLRSCGDSY-YIHSGKNFFCLDSFVTKNASVFDGFSI 1361 TLA V+ GP+ + + F + S+ Y H+G L + +K+ Sbjct 1421 TLALMHDYVILTLGPV-KKYQRLFDQLERPSHIYYHAGNTPHDLRRWCSKHLET--SHCT 1477 Query 1362 ESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFC 1421 +DYTAFD SQ + FE+ ++ L + + ++ LK + + G L MR TGE Sbjct 1478 TNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTGEPG 1537 Query 1422 TFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVE 1481 T+ NT N+ L+Y + R+ L +GDD +L R + + L Sbjct 1538 TYDDNTDYNLAVLNLQYDL--RKTPTLVSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSS 1595 Query 1482 EVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLY 1541 + +FCG+YL P G I++P L+A++ + + + + +YL E + LG+ L+ Sbjct 1596 LIDG--LFCGYYLGPQGCIRNPLALFAKLMIAEDDGSAFDKLPSYLTEFSIGHGLGDSLW 1653 Query 1542 TILKEEDFEYHYLVIRFFVRNS 1563 +L + Y +F R + Sbjct 1654 QLLPSDLVLYQSACFDYFCRKA 1675 Range 2: 4 to 331 Score:65.1 bits(157), Expect:8e-09, Method:Compositional matrix adjust., Identities:77/359(21%), Positives:139/359(38%), Gaps:40/359(11%) Query 10 EIAINKLPSK-QSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFK 68 ++A++ L S D + + D L+ + F +++ E L + G+ ++ + Sbjct 4 QLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRMGIQVSGLTST 63 Query 69 SHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLGMY 128 H H K +E +LL+ + +V F K F K+ SH K ++ Sbjct 64 PHPHAAHKTLELNLLFNHWAKSCNVDSAVVFM-----KPSKFFKLQEKNSHFK----SLH 114 Query 129 NAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFE 188 N + D RY S T +F ++HD L + +P ++ LFE Sbjct 115 NYRLHPHDSNRYPHPSTS------------LPTEKRF----YIHDSLMYFTPHQISGLFE 158 Query 189 TIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSK 248 + P + + A+ V P E D +S P +Y Y +H S+ + P+G ++ Y Q + Sbjct 159 SCPNLLSLYASLVVPPESSMTD-LSLNPDLYRYSIHKSTLHYTPEGHSAGSYNQPVNALD 217 Query 249 WPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR--------GRACNEFNHFDKPSCLLAE 300 W S IQ + + V+ L+S H +R + + F P L+ Sbjct 218 W-LKISAIQTPSLSLSVSVLESWGPLHSLLIERSSQTQNPDSQKIKDLISFQTPQALILP 276 Query 301 EMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYS 359 L ++ + T +L TY +T + +R + E N+V S Sbjct 277 NPDSLAVPLRHRLVPQKTYDALFTYTRATRTLRTSDPAGFVRTQSNK----PEFNWVTS 331 Range 3: 874 to 1101 Score:58.5 bits(140), Expect:7e-07, Method:Compositional matrix adjust., Identities:73/261(28%), Positives:107/261(40%), Gaps:40/261(15%) Query 781 GFAGSGKTHKVLQWINYTPSVKRM-FISPRRMLADEVEPQLKGTA---CQVHTWETALKK 836 GFAG GKTH + Q + TP ++P L E + + A + TWE+AL K Sbjct 874 GFAGCGKTHPIQQLLK-TPHFHNFRVVTPTTNLRSEWKSDMALPAHHNWRFSTWESALLK 932 Query 837 IDGTFMEVFV-DEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFG 895 E+ V DEI P GYL L + + ++L + G Sbjct 933 ----HAEILVIDEIYKLPRGYLDL---------------SLIADPTVKL------VILLG 967 Query 896 DPLQLRYY--SAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESK 953 DPLQ Y+ SA +N L + +I ++ I + Y + YR + +L ++P Sbjct 968 DPLQGEYHSTSAHSSN-LRLSSEIPRLLPFIDY-YCYWSYRVPKCVAKLFSLPCFNPSEG 1025 Query 954 FSRKFFADISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNL 1013 F + S +V E G A T+S SQG T S I LD+N Sbjct 1026 FIKTTLDFFPSANNLVNSHSVVHISEACGWNA-----VTISSSQGCTFSDPAFIHLDRNT 1080 Query 1014 FAGGANAAIVAITRSKVGFDF 1034 + +VA+TRS+ G F Sbjct 1081 ALLSPSNCLVALTRSRSGVYF 1101 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Sclerotinia sclerotiorum debilitation-associated virus CHN/Xie] Sequence ID: Q6YI57.2 Length: 1700 Range 1: 1293 to 1564 Score:112 bits(281), Expect:2e-23, Method:Compositional matrix adjust., Identities:80/274(29%), Positives:133/274(48%), Gaps:6/274(2%) Query 1282 FMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGD-SYYIHSGK 1340 F+K+Q+ K K KAGQT+ F + G + R + F + C + + Y+H K Sbjct 1293 FLKTQWVRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLCTNPNVYLHREK 1352 Query 1341 NFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRL 1400 ++V KN F G + +D AFD+SQD + FE ++LGV +E Y+ Sbjct 1353 TEQDFSTWV-KNGWNFSGHATINDCEAFDASQDGAFVEFERLHAEFLGVPRELIDFYVDT 1411 Query 1401 KLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMC--SLS 1458 K+ G++++MR +GE T+ FNT+ANM F KY I P ++GDD + Sbjct 1412 KIKSYIWRGTISVMRLSGEGPTYDFNTWANMAFMATKYSI-PSVAMTAYSGDDFACDQVL 1470 Query 1459 SLKRRRGERATRL-MKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQ 1517 S+K E R +K + + FCG ++P G+IK+P+ L+ +K E Sbjct 1471 SVKPAFKELECRFKLKEKRFLKSQGRGSYADFCGMIITPNGVIKNPRKLYLSLKSHDEIG 1530 Query 1518 LLKECVDNYLFEAIFAYRLGERLYTILKEEDFEY 1551 + + + NY + LG+ +++ L + E+ Sbjct 1531 TIDKAIVNYYNDLRTLISLGDNIFSALDATETEF 1564 Range 2: 267 to 644 Score:97.4 bits(241), Expect:1e-18, Method:Compositional matrix adjust., Identities:103/416(25%), Positives:168/416(40%), Gaps:55/416(13%) Query 31 EIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSL 90 EI+K + + ++ + + + Q L +G+ P +SH+H K IEN LL Sbjct 267 EIKKEIAIVRKYNPYHHSSKQQSALESYGIGSDPYAVRSHTHAAEKAIENKLL------- 319 Query 91 LSSFKSVAFFSLRENKVDSFL--KMHSVFSHGKIKSLGMY-NAIIDGKDKYRYGDVEFSS 147 + +LR V + L K + G+ +Y N I++ KD RY F Sbjct 320 -----DIVGMNLRRRSVITMLWQKRNKAHLMGRSNCKDVYVNTIMEAKDLVRYDQFSF-- 372 Query 148 FRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELL 207 GL + F+ D LH ++P + LFE P + + AT V P E L Sbjct 373 ------GLPSVATS------TAFIGDALHHMTPESVFDLFERSPNLMVLHATIVIPPETL 420 Query 208 FGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTK 267 + S P +Y+ + + F + P+G A Y + NS W S IQ + + V + Sbjct 421 LKCR-SSNPELYSLRYYDDKFVYIPEGHAGGSYVHEVKNSNW-LAISHIQRGGKFLTVKR 478 Query 268 LQSLFAHHVFSFDRGRA-CNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYM 326 L++L AHH F +G+ + F PS + ++ + + ++ + + Y+ Sbjct 479 LETLAAHHYFVIVKGKVETDSIRVFQSPSQVELLDIFADRQSNVRCSLDHAFAIKMERYV 538 Query 327 ACLKTANAASAVAKLRQL----EKRDLYPDEL----NFVYSFGEHFKNFGMRDD-----F 373 LK A AK RQL E P +L N+ Y F H F ++ F Sbjct 539 HSLKRLELADVTAKTRQLLSSEELLQYSPTDLVKIDNYFY-FLAHTSRFNSSEELIGSGF 597 Query 374 DVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIILD 429 S++ +K F ++ F+ S N K L L K I + +I D Sbjct 598 FESLVSPLKQWFSEICEKFLGKS---------NFHKTLEALEWKVINYDVKTVIYD 644 >RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Grapevine virus A isolate Is 151] Sequence ID: Q67707.1 Length: 198 Range 1: 36 to 189 Score:89.0 bits(219), Expect:2e-18, Method:Composition-based stats., Identities:64/178(36%), Positives:86/178(48%), Gaps:28/178(15%) Query 1924 NHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETD-EGRKARAGSSGEK 1982 N Y LFG IA+ G+S K +HY GE D G KA +K Sbjct 36 NMYLNTLFGYIALVGTSKKA-----------IHY--------GEVDIVGPKA-----SKK 71 Query 1983 TKI---WRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLAT 2039 T I ++ +S +V ++T + + + T R++CEPFA A +FL G + Sbjct 72 TGIDPRGKMVVSELVGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAEMGTYS 131 Query 2040 NIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGS 2097 + K ++ K P V FDFA+GL + LT E VI M RLFRTEG KGVF A S Sbjct 132 QLATKMTRSGFKEPQVMFDFASGLDLKALTLQEATVIQAMHSRLFRTEGAKGVFNAQS 189 >RecName: Full=RNA replication protein; AltName: Full=ORF 1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Lily virus X] Sequence ID: P27327.1 Length: 162 Range 1: 1 to 151 Score:78.6 bits(192), Expect:3e-15, Method:Composition-based stats., Identities:50/152(33%), Positives:80/152(52%), Gaps:4/152(2%) Query 1412 AIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSS--LKRRRGERAT 1469 AIMR +GE TF NT + + KY+++ + L+AGDDM ++ LK A Sbjct 1 AIMRMSGEGPTFDANTECAIAYHHTKYQVEQGTAQ-LYAGDDMAQDTTPILKPSFRLIAD 59 Query 1470 RL-MKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLF 1528 R+ +KS +T + ++ FCGW ++P GIIK P+ L+A +++ E NY Sbjct 60 RIELKSKEVTHTQVPGEYATFCGWCVTPKGIIKEPRKLFASLQLAKHIGKTAEVKTNYAH 119 Query 1529 EAIFAYRLGERLYTILKEEDFEYHYLVIRFFV 1560 + AYRLG+ L +L ++ +H +R V Sbjct 120 DLAHAYRLGDELQDVLTPDEAAFHQATVRDLV 151 >RecName: Full=RNA replicase polyprotein [Physalis mottle virus] Sequence ID: P36352.1 Length: 178 Range 1: 26 to 106 Score:55.1 bits(131), Expect:6e-07, Method:Compositional matrix adjust., Identities:27/81(33%), Positives:42/81(51%), Gaps:0/81(0%) Query 1482 EVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLY 1541 E+ P+FCG+YLSP G I++P +A++ + L E V +YL E + LG+++ Sbjct 26 EITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPEKVLSYLSEVSIGHNLGDQII 85 Query 1542 TILKEEDFEYHYLVIRFFVRN 1562 L +Y FF RN Sbjct 86 QHLPPHLIQYQSACFDFFCRN 106