MAST - Motif Alignment and Search Tool
MAST version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Wed May 22 01:32:27 2013
Database contains 39 sequences, 11598 residues
MOTIFS ./meme.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 29 CAKHFPGHGDTDVDSHYGLPVVNHSKERW
2 29 GRELRALGINMNFAPCVDVNNNPNNPVIG
3 29 ACMSHKIMTGLLRGEMGFQGVIITDWMNM
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.16
3 0.15 0.08
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 38 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| YBBD_BACSU/43-392
|
| 7.6e-70
| 350
|
|
| O82840_STRTL/74-414
|
| 2.7e-67
| 341
|
|
| HEXA_PSEO7/17-379
|
| 5.9e-60
| 363
|
|
| P74340_SYNY3/10-340
|
| 8.8e-46
| 331
|
|
| NAGZ_HAEIN/5-311
|
| 3.1e-20
| 307
|
|
| NAGZ_ECOLI/5-303
|
| 5.1e-20
| 299
|
|
| NAGZ_VIBFU/5-297
|
| 3.9e-17
| 293
|
|
| O82074_TROMA/48-376
|
| 2.3e-16
| 329
|
|
| O66050_RUMAL/23-293
|
| 2.8e-15
| 271
|
|
| Q12653_9ASCO/66-336
|
| 3.9e-15
| 271
|
|
| O14424_COCIT/72-350
|
| 5e-15
| 279
|
|
| O08331_CLOSR/13-285
|
| 9.9e-15
| 273
|
|
| BGLS_RHIRD/10-276
|
| 4.5e-14
| 267
|
|
| BGLS_HANAN/68-353
|
| 2.1e-13
| 286
|
|
| BGL1_SACFI/69-357
|
| 6e-13
| 289
|
|
| O30713_FLAME/2-311
|
| 8.2e-13
| 310
|
|
| Q60055_9BACT/43-352
|
| 3.1e-12
| 310
|
|
| BGLS_BUTFI/544-820
|
| 3.6e-12
| 277
|
|
| O31356_BACFG/43-352
|
| 3.8e-12
| 310
|
|
| Q00903_9PEZI/60-341
|
| 4.6e-12
| 282
|
|
| O69499_MYCLE/59-378
|
| 6.4e-12
| 320
|
|
| BGL1_ASPAC/55-340
|
| 6.4e-12
| 286
|
|
| O13385_COCHE/60-341
|
| 1.5e-11
| 282
|
|
| Q60038_THENE/12-302
|
| 4.9e-11
| 291
|
|
| BGLX_ECOLI/46-352
|
| 6.3e-11
| 307
|
|
| Q99324_SEPLY/58-345
|
| 9.1e-11
| 288
|
|
| Q56322_THENE/23-347
|
| 9.9e-11
| 325
|
|
| P96316_9CELL/63-348
|
| 1.8e-10
| 286
|
|
| BGLB_CLOTH/13-285
|
| 1.8e-09
| 273
|
|
| BGLS_RUMAL/465-761
|
| 4.1e-09
| 297
|
|
| O24749_9PROT/49-335
|
| 8.8e-09
| 287
|
|
| O68843_STRAT/2-280
|
| 4.6e-08
| 279
|
|
| BGLS_KLUMA/14-281
|
| 6.3e-08
| 268
|
|
| Q59716_PREBR/38-330
|
| 7.3e-08
| 293
|
|
| O70021_SACER/45-319
|
| 3e-07
| 275
|
|
| Q00025_AJECA/56-341
|
| 3.8e-07
| 286
|
|
| Q47912_9GAMM/80-405
|
| 1e-06
| 326
|
|
| Q92458_HYPJE/81-376
|
| 6.2
| 296
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| YBBD_BACSU/43-392
| 7.6e-70
|
|
|
| O82840_STRTL/74-414
| 2.7e-67
|
|
|
| HEXA_PSEO7/17-379
| 5.9e-60
|
|
|
| P74340_SYNY3/10-340
| 8.8e-46
|
|
|
| NAGZ_HAEIN/5-311
| 3.1e-20
|
|
|
| NAGZ_ECOLI/5-303
| 5.1e-20
|
|
|
| NAGZ_VIBFU/5-297
| 3.9e-17
|
|
|
| O82074_TROMA/48-376
| 2.3e-16
|
|
|
| O66050_RUMAL/23-293
| 2.8e-15
|
|
|
| Q12653_9ASCO/66-336
| 3.9e-15
|
|
|
| O14424_COCIT/72-350
| 5e-15
|
|
|
| O08331_CLOSR/13-285
| 9.9e-15
|
|
|
| BGLS_RHIRD/10-276
| 4.5e-14
|
|
|
| BGLS_HANAN/68-353
| 2.1e-13
|
|
|
| BGL1_SACFI/69-357
| 6e-13
|
|
|
| O30713_FLAME/2-311
| 8.2e-13
|
|
|
| Q60055_9BACT/43-352
| 3.1e-12
|
|
|
| BGLS_BUTFI/544-820
| 3.6e-12
|
|
|
| O31356_BACFG/43-352
| 3.8e-12
|
|
|
| Q00903_9PEZI/60-341
| 4.6e-12
|
|
|
| O69499_MYCLE/59-378
| 6.4e-12
|
|
|
| BGL1_ASPAC/55-340
| 6.4e-12
|
|
|
| O13385_COCHE/60-341
| 1.5e-11
|
|
|
| Q60038_THENE/12-302
| 4.9e-11
|
|
|
| BGLX_ECOLI/46-352
| 6.3e-11
|
|
|
| Q99324_SEPLY/58-345
| 9.1e-11
|
|
|
| Q56322_THENE/23-347
| 9.9e-11
|
|
|
| P96316_9CELL/63-348
| 1.8e-10
|
|
|
| BGLB_CLOTH/13-285
| 1.8e-09
|
|
|
| BGLS_RUMAL/465-761
| 4.1e-09
|
|
|
| O24749_9PROT/49-335
| 8.8e-09
|
|
|
| O68843_STRAT/2-280
| 4.6e-08
|
|
|
| BGLS_KLUMA/14-281
| 6.3e-08
|
|
|
| Q59716_PREBR/38-330
| 7.3e-08
|
|
|
| O70021_SACER/45-319
| 3e-07
|
|
|
| Q00025_AJECA/56-341
| 3.8e-07
|
|
|
| Q47912_9GAMM/80-405
| 1e-06
|
|
|
| Q92458_HYPJE/81-376
| 6.2
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
300 |
325 |
350 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
YBBD_BACSU/43-392
LENGTH = 350 COMBINED P-VALUE = 1.94e-71 E-VALUE = 7.6e-70
DIAGRAM: 118-[2]-29-[1]-46-[3]-70
[2]
1.7e-28
GRELRALGINMNFAPCVDVNNNPNNPVIG
++++++++++ ++++++++++++++++++
76 LMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRS
[1]
4.3e-28
CAKHFPGHGDTDVDSHYGLPVVNHSKERW
++++++++++++++++++++ +++ ++++
151 FSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVM
[3]
5.2e-28
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++++++++++++++++++++++++++
226 TAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAG
O82840_STRTL/74-414
LENGTH = 341 COMBINED P-VALUE = 6.95e-69 E-VALUE = 2.7e-67
DIAGRAM: 129-[2]-29-[1]-35-[3]-61
[2]
2.4e-25
GRELRALGINMNFAPCVDVNN
+ +++++++++++++++++++
76 AALAQPRGLPLLIATDQEHGIVCRIGKPATLFPGAMAIGAGGSTADARTLGRISGAELRAMGVNQDYSPDADVNV
[1]
7.2e-30
NPNNPVIG CAKHFPGHGDTDVDSHYGLPVVNHSKERW
++ +++++ +++++++++++ +++++++++++++++++
151 NPANPVIGVRSFGADPDAVARMVAAQVKGYQGSGVAATAKHFPGHGDTAVDSHTGFPVITHTREQWETLDAVPFR
[3]
9.4e-27
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++++++++++++++++++++++++++
226 AAIKAGIDSIMTAHLQFPALDPSGDPATLSRPILTGILREELGYDGVVITDSLGMEGVRTKYGDDRVPVLALKAG
HEXA_PSEO7/17-379
LENGTH = 363 COMBINED P-VALUE = 1.51e-61 E-VALUE = 5.9e-60
DIAGRAM: 131-[2]-29-[1]-46-[3]-70
[2]
5.9e-31
GRELRALGINMNFAPCVDV
+++++++++++++++++++
76 QQSKSQLPLFIAIDQEGGRVARINREQATSFTGNMSIGATYPKQGDIYATKVASAIGKELNSLGINVNFAPTVDV
[1]
8.3e-23
NNNPNNPVIG CAKHFPGHGDTDVDSHYGLPVVNHSKERW
++++++++++ ++++++++++++++++++++++ +++ +
151 NSNPNNPVINVRSFSENPTVVTKLGLAQVKAFEAAGVLSALKHFPGHGDTHVDSHTGLPRVDHDRDKINQQDLLP
[3]
7.3e-21
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++++ +++++++++++++++++++++++
226 FAEIIKASPPGMIMTAHIQYPALDNSKVVNSQGESMIRPATMSYQIMTQLLRHELGYQGVTVTDALDMAGISDFF
P74340_SYNY3/10-340
LENGTH = 331 COMBINED P-VALUE = 2.26e-47 E-VALUE = 8.8e-46
DIAGRAM: 120-[2]-29-[1]-34-[3]-61
[2]
8.4e-21
GRELRALGINMNFAPCVDVNNNPNNPVIG
+++ +++ ++ +++ +++++++++++++
76 ADIEEGVGQRFSGATWFPPPMALGSIAEQDLDLAQQYAKQMGEVIAQEALAVGLNWILAPIADVNNNPNNPVINV
[1]
2.1e-19
CAKHFPGHGDTDVDSHYGLPVVNHSKERW
+++++++++++++++++ ++++ ++ ++
151 RAFGETPEIVGTLVREFITGTQQFPVLNSAKHFPGHGDTSTDSHLHLPVIPHPIDRLETLELLPFQQAIAQGVDS
[3]
6.6e-20
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++++++++++ ++++++++++++++++ +
226 VMTAHILVPAWDDSNPATLSPAILTGQLRQKLGFDGIIVTDALIMGGITDIASPREVAVRALEAGVDILLMPPDP
NAGZ_HAEIN/5-311
LENGTH = 307 COMBINED P-VALUE = 8.02e-22 E-VALUE = 3.1e-20
DIAGRAM: 100-[2]-27-[1]-34-[3]-59
[2]
2.1e-06
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++ ++ + + ++++++
76 SMQAFQETLSATEQVSFAKEAGWQMAAEMIALDIDLSFAPVLDLGHECRAIGDRSFSSDVKSAVNLATAFIDGMH
[1] [3]
1.2e-14 9.2e-1
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMSHK
+ +++++++ + ++++ + ++++++ ++ ++
151 QAGMASTGKHFPGHGHVLADSHLETPYDDRTKEEIFSGDLQPFQQLISQNKLDAIMPAHVIYSQCDSQPASGSKY
3
IMTGLLRGEMGFQGVIITDWMNM
+ ++++++++++ ++++ +++
226 WLKEILRKKLNFQGTIFSDDLGMKGAGVMGNFVERSKKALNAGCDLLLLCNEREGVIQVLDNLKLTENQPHFMAR
NAGZ_ECOLI/5-303
LENGTH = 299 COMBINED P-VALUE = 1.31e-21 E-VALUE = 5.1e-20
DIAGRAM: 100-[2]-27-[1]-34-[3]-51
[2]
1.7e-06
GRELRALGINMNFAPCVDVNNNPNNPVIG
++++ ++ + +++++++
76 AAQSFAALSGMEEGGKLAQEAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPQKALAIASRFIDGMH
[1] [3]
3.2e-14 7.5e-1
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMSHK
+ +++++++ + +++ ++ ++++++ ++ ++
151 EAGMKTTGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSDVDPRPASGSPY
3
IMTGLLRGEMGFQGVIITDWMNM
+ +++++++++++++++ + +
226 WLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPIKAERVTRL
NAGZ_VIBFU/5-297
LENGTH = 293 COMBINED P-VALUE = 1.01e-18 E-VALUE = 3.9e-17
DIAGRAM: 97-[2]-27-[1]-31-[3]-51
[2]
1.1e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++ + + + ++++++
76 AAQLYARSDNGTQLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVG
[1] [3]
1.2e-10 3.4e-14
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMSHKIMTGLL
+ +++++++ + ++++ + +++ ++ ++ + +++
151 MATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVL
RGEMGFQGVIITDWMNM
+++++++++++++ + +
226 RQELGFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSL
O82074_TROMA/48-376
LENGTH = 329 COMBINED P-VALUE = 5.97e-18 E-VALUE = 2.3e-16
DIAGRAM: 108-[2]-43-[1]-28-[3]-63
[2]
3.3e-06
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++++ ++ +++++ + +
76 GHNNVYNATIFPHNVGLGVTRDPALIKRIGEATALECRATGIPYAFAPCIAVCRDPRWGRCYESYSEDHTIVQAM
[1]
7.0e-05
CAKHFPGHGDTDVDSHYGLPVVNHSKERW
+++++ + + + ++ +
151 TEIIPGLQGDVPPDVKKGVPFVGGKTKVAACAKHFVGDGGTTKGIDENNTVIDSRGLFSIHMPAYHDSIKKGVAT
[3]
8.4e-19
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++++++++++ ++++++++++++ +
226 VMVSYSSWNGLRMHANRDLVTGYLKNKLKFRGFVISDWEGIDRITDPPGRNYSYSVEAGVGAGIDMIMVPEDFTK
O66050_RUMAL/23-293
LENGTH = 271 COMBINED P-VALUE = 7.16e-17 E-VALUE = 2.8e-15
DIAGRAM: 78-[2]-85-[3]-50
[2]
2.4e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG
++++ + + + +++ + +++
76 KALGEECQSEKVSVILGPGCNIKRSPLCGRNFEYFSEDPYLASQMAISHIKGVQSKGAGTSLKHFAANNQEHRRM
[3]
3.9e-19
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++ ++++ +++++++++++++++++
151 SVSAEIDERTLHEIYLAAFESVIKEAKPWTVMCSYNKINGEYSSQNKSLLTDTLREKWGFDGLVMSDWGAVDDRV
Q12653_9ASCO/66-336
LENGTH = 271 COMBINED P-VALUE = 9.95e-17 E-VALUE = 3.9e-15
DIAGRAM: 73-[2]-91-[3]-49
[2
1.
GR
+
1 TNEEKTNLTFGSSGDTGCSGMISDVPDVDFPGLCLQDAGNGVRGTDMVNAYASGLHVGASWNRQLAYDRAVYMGA
]
2e-05
ELRALGINMNFAPCVDVNNNPNNPVIG
+ + ++++ +++++ +
76 EFRHKGVNVLLGPVVGPIGRVATGGRNWEGFTNDPYLAGALVYETTKGIQENVIACTKHFIGNEQETNRNPSGTY
[3]
1.7e-19
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++ ++++++++++ +++++++++++++++
151 NQSVSANIDDKTMHELYLWPFQDSVRAGLGSIMGSYNRVNNSYACKNSKVLNGLLKSELGFQGFVVSDWGGQHTG
O14424_COCIT/72-350
LENGTH = 279 COMBINED P-VALUE = 1.28e-16 E-VALUE = 5e-15
DIAGRAM: 73-[2]-91-[3]-57
[2
7.
GR
++
1 TLAGKVNLTTGTGFLMALVGQTGSALRFGIPRLCLQDGPLGLRNTDHNTAFPAGISVGATFDKKLMYERGCAMGE
]
0e-05
ELRALGINMNFAPCVDVNNNPNNPVIG
+ + + ++ +++++ +
76 EFRGKGANVHLGPSVGPLGRKPRGGRNWEGFGSDPSLQAIAAVETIKGVQSKGVIATIKHLVGNEQEMYRMTNIV
[3]
9.1e-20
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++++++++++++++++++++++++++ ++
151 QRAYSANIDDRTMHELYLWPFAESVRAGVGAVMMAYNDVNGSASCQNSKLINGILKDELGFQGFVMTDWYAQIGG
O08331_CLOSR/13-285
LENGTH = 273 COMBINED P-VALUE = 2.53e-16 E-VALUE = 9.9e-15
DIAGRAM: 80-[2]-28-[1]-28-[3]-50
[2] [1]
5.7e-05 3.6e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG CAKHFPGHGDTDV
++++ + ++ + +++ + ++ +++++ +
76 VGPALGEECQAEGIAVLLGPGTNIKLSPLSGRNFEYFSEDPYLSSEMARSHIKGVQSRGVGTSLKHFAANNQEHR
[3]
8.8e-18
DSHYGLPVVNHSKERW ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+ + ++++ ++ ++ ++ +++++++ ++++++++++++++
151 RMSVDAVIDERTLREIYLASFEGAVKKAKPWTIMCSYNRVNGEYASENKFLLTDVLRNEWGFEGIVVSDWGAVNE
BGLS_RHIRD/10-276
LENGTH = 267 COMBINED P-VALUE = 1.17e-15 E-VALUE = 4.5e-14
DIAGRAM: 74-[2]-85-[3]-50
[
6
G
+
1 TLEEQVSLLSGADFWTTVAIERLGVPKIKVTDGPNGARGGGSLVGGVKSACFPVAIALGATWDPELIERAGVALG
2]
.6e-07
RELRALGINMNFAPCVDVNNNPNNPVIG
+ ++ + + +++++ ++ ++
76 GQAKSKGASVLLAPTVNIHRSGLNGRNFECYSEDPALTAACAVAYINGVQSQGVAATIKHFVANESEIERQTMSS
[3]
6.5e-17
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+ ++ ++++++++++++++++++++ +
151 DVDERTLREIYLPPFEEAVKKAGVKAVMSSYNKLNGTYTSENPWLLTKVLREEWGFDGVVMSDWFGSHSTAETIN
BGLS_HANAN/68-353
LENGTH = 286 COMBINED P-VALUE = 5.42e-15 E-VALUE = 2.1e-13
DIAGRAM: 207-[3]-50
[3]
1.1e-18
ACMSHKIMTGLLRGEMGF
+++++ +++ ++++++++
151 DKHAGKIDPGMFNTSSSLSSEIDDRAMHEIYLWPFAEAVRGGVSSIMCSYNKLNGSHACQNSYLLNYLLKEELGF
QGVIITDWMNM
++++++++++
226 QGFVMTDWGALYSGIDAANAGLDMDMPCEAQYFGGNLTTAVLNGTLPQDRLDDMATRILSA
BGL1_SACFI/69-357
LENGTH = 289 COMBINED P-VALUE = 1.54e-14 E-VALUE = 6e-13
DIAGRAM: 202-[3]-58
[3]
1.1e-18
ACMSHKIMTGLLRGEMGFQGVII
++ ++ ++++++++++++++++
151 INPATNQTTKEAISANIPDRAMHALYLWPFADSVRAGVGSVMCSYNRVNNTYACENSYMMNHLLKEELGFQGFVV
TDWMNM
++++++
226 SDWGAQLSGVYSAISGLDMSMPGEVYGGWNTGTSFWGQNLTKAIYNETVPIERLDDMATRILAA
O30713_FLAME/2-311
LENGTH = 310 COMBINED P-VALUE = 2.10e-14 E-VALUE = 8.2e-13
DIAGRAM: 54-[2]-18-[2]-34-[1]-28-[3]-60
[2]
1.5e-05
GRELRALGINMNFAPCVDVNN
+ + +++ + + ++ ++
1 TLDEKIGQLNLPSSGDFTTGQAQSSDIGKKIEQGLVGGLFNIKGVNKIKAVQKVAIEKSRLKIPMIFGMDVIHGY
[2]
4.3e-08
NPNNPVIG GRELRALGINMNFAPCVDVNNNPNNPVIG
++ +++ ++ ++++ +++ +++ +
76 ETTFPIPLGLASSWDMDLIQRSAQIAAKEASADGINWTFSPMVDVSREPRWGRVSEGSGEDPYLGSEIAKAMVYG
[1] [3]
3.3e-05 8.8e
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMS
+ +++ + + +++ + ++ +
151 YQGKDLSLKNTILACVKHFALYGAPEGGRDYNTVDMSHIRMFNEYFPPYKAAVDAGVGSVMASFNEVDGVPATGN
-13
HKIMTGLLRGEMGFQGVIITDWMNM
+ ++ ++++++++++++++++ +
226 KWLMDDVLRKQWGFNGFIVTDYTGINEMIQHGMGDLQQVSALALNAGVDMDMVGEGFLTTLKKSLSEGKVTEQQI
Q60055_9BACT/43-352
LENGTH = 310 COMBINED P-VALUE = 7.85e-14 E-VALUE = 3.1e-12
DIAGRAM: 99-[2]-91-[3]-62
[2]
1.0e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG
+++ ++ + ++ +++ + ++
76 IFPTQLAMACSWNPELVKKAGSITAKEVAADGLHWTFSPILCLGRDLRWGRINETFGEDPYLAGELAASIIQGYQ
[3]
1.6e-1
ACMSHK
+++++
151 GDSLSDPDSILACAKHYIAYGEATGGRDAYDAQISIRKVRDVFLPPFRKAVEAGCATFMSSYQSIDGTPVTANKK
6
IMTGLLRGEMGFQGVIITDWMNM
++ +++++++++++++++++ +
226 VLRKLLKEELGFDGFVVTDWNNVGSLICNQHVAGDMETAARKAIEAGNDMIMTTNEFYEAALSLIRNGVVPGELI
BGLS_BUTFI/544-820
LENGTH = 277 COMBINED P-VALUE = 9.26e-14 E-VALUE = 3.6e-12
DIAGRAM: 201-[3]-47
[3]
5.5e-17
ACMSHKIMTGLLRGEMGFQGVIIT
++ +++++++++++++++++++++
151 LNNKESNRKGSDSRASERAIREIYLKAFEIIVKEQSPGASCLQYNIVNGQRSSESHDLLTGILRDEWGFEGVVVS
DWMNM
++ +
226 DWWGFGEHYKEVLAGNDIKMGCGYTEQLLEAIDKKALKRKDLEKRQSESSRC
O31356_BACFG/43-352
LENGTH = 310 COMBINED P-VALUE = 9.66e-14 E-VALUE = 3.8e-12
DIAGRAM: 54-[2]-18-[2]-34-[1]-28-[3]-14-[2]-17
[2]
5.5e-05
GRELRALGINMNFAPCVDVNN
+ + +++++ + ++ ++
1 TLEEKIGQLNLPVTGEITTGQAKSSDVAKRIRNGEVGGLFNLKGVERIREVQRQAVEESRLGIPLLFGMDVIHGY
[2]
3.6e-06
NPNNPVIG GRELRALGINMNFAPCVDVNNNPNNPVIG
++ + + ++ ++ + +++ +++ +
76 ETIFPIPLGLSCTWDMKAIEESARIAAVEASADGISWTFSPMVDVSRDPRWGRVSEGNGEDPFLGAAIARAMIRG
[1] [3]
1.0e-05 1.7e
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMS
+ +++ + + +++ + ++ +
151 YQGKDMSRNDEIMACVKHFALYGASEAGRDYNTVDMSRQRMFNEYMLPYQAAVEAGVGSVMASFNEVDGVPATGS
[2]
-13 8.6e-05
HKIMTGLLRGEMGFQGVIITDWMNM GRELRALGINMNFAPCVDVNNNPNNPVIG
+ +++++++++++++++++++ + + ++ ++ ++ + + +
226 KWLMTDVLRKQWGFDGFVVTDYTGINEMIDHGMGDQQTVAALALNAGVDMDMVSDAFSGTLKKSVEEGKVSAAAI
Q00903_9PEZI/60-341
LENGTH = 282 COMBINED P-VALUE = 1.19e-13 E-VALUE = 4.6e-12
DIAGRAM: 71-[2]-95-[3]-58
[2]
8.9e
GREL
+++
1 TPEEKANMVTGTPGPCVGNIAPVPRLNFTGLCLQDGPATLRQATYVTVFPGGVSAASSWDKDLIYKHGVLMAEEF
-05
RALGINMNFAPCVDVNNNPNNPVIG
+ + ++ +++++ +
76 RDKGSHVILGPVIGPRGRSPYAGRNWEGFSPTSYLAGVMAEQTVKGMQSVGVQACTKHFIGNEQEEQRNPTAVDG
[3]
1.3e-16
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++ +++++++++++++++++++ +
151 KTVEAISSNIDDRTMHEAYLWPFYNAVRAGTTSIMCSYQRINGSYGCQNSKTLNGLLKTELGFQGFVVSDWAATH
O69499_MYCLE/59-378
LENGTH = 320 COMBINED P-VALUE = 1.63e-13 E-VALUE = 6.4e-12
DIAGRAM: 103-[2]-29-[1]-130
[2]
1.1e-11
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++ +++ ++++++++ ++ +++
76 SLIGMAPSARVLAQTSTVDQVYDMALDRGHKMRDLGITIDFAPVVDVTDAPDDSVIGGRSFSSDPAVVTAYAGAY
[1]
2.9e-09
CAKHFPGHGDTDVDSHYGLPVVNHSKERW
++++++++ + +++++ + +
151 ARGLRDAGVLPVLKHFPGHGHGSGDSHTGGVTTPPLQDLQTNDLVPYRTLVADAPVGVMLGHLDVPGLTGDDPAS
BGL1_ASPAC/55-340
LENGTH = 286 COMBINED P-VALUE = 1.64e-13 E-VALUE = 6.4e-12
DIAGRAM: 120-[1]-52-[3]-56
[1]
3.1e-06
CAKHFPGHGDTDVDSHYGLPVVNHSKERW
+++ + + + ++ + ++ + +
76 QEFSDKGIDVQLGPAAGPLGRSPDGGRNWEGFSPDPALTGVLFAETIKGIQDAGVVATAKHYILNEQEHFRQVAE
[3]
1.5e-14
ACMSHKIMTGLLRGEMGFQGVIIT
++++ ++++++ ++++++++++
151 AAGYGFNISDTISSNVDDKTIHEMYLWPFADAVRAGVGAIMCSYNQINNSYGCQNSYTLNKLLKAELGFQGFVMS
DWMNM
++++
226 DWGAHHSGVGSALAGLDMSMPGDITFDSATSFWGTNLTIAVLNGTVPQWRVDDMAVRIMAA
O13385_COCHE/60-341
LENGTH = 282 COMBINED P-VALUE = 3.81e-13 E-VALUE = 1.5e-11
DIAGRAM: 194-[3]-59
[3]
2.3e-16
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++ ++++++++++++++++++++++
151 VKPGYSSNVDDRTLHELYLWPFAEGVRSGVGSVMIAYNAVNGSACAQNSYMINGLLKDELGFQGFVMSDWLAQIS
Q60038_THENE/12-302
LENGTH = 291 COMBINED P-VALUE = 1.26e-12 E-VALUE = 4.9e-11
DIAGRAM: 91-[2]-85-[3]-57
[2]
6.3e-08
GRELRALGINMNFAPCVDVNNNPNNPVIG
+++ + +++ + +++ ++ ++++
76 ASTWNRELLEEVGKAMGEEVREYGVDVLLGPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGVGACI
[3]
1.5e-11
ACMSHKIMTGLLRGEMGFQG
++++ ++ +++++++++++
151 KHFVANNQETNRMVVDTIVIERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEG
VIITDWMNM
++++++ +
226 FVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKV
BGLX_ECOLI/46-352
LENGTH = 307 COMBINED P-VALUE = 1.62e-12 E-VALUE = 6.3e-11
DIAGRAM: 97-[2]-34-[1]-28-[3]-61
[2]
2.6e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ + + + ++ ++ +++ +
76 PISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGK
[1] [3]
1.4e-05 3.6e-13
CAKHFPGHGDTDVDSHYGLPVVNHSKERW ACMSHKIM
+ +++ + + + ++ + ++ + ++
151 SPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLL
TGLLRGEMGFQGVIITDWMNM
++++++++++++++++ ++
226 KDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDA
Q99324_SEPLY/58-345
LENGTH = 288 COMBINED P-VALUE = 2.32e-12 E-VALUE = 9.1e-11
DIAGRAM: 198-[3]-61
[3]
2.2e-17
ACMSHKIMTGLLRGEMGFQGVIITDWM
++ +++++++++++++++++++++++
151 DDGTEIQAISSNIDDRTMHELYLWPFANAVRSGVASVMCSYNRLNQTYACENSKLMNGILKGELGFQGYVVSDWY
NM
+
226 ATHSGVESVNAGLDMTMPGPLDSPSTALRPPPSYLGGNLTEAVLNGTIPEARVDDMARRILMP
Q56322_THENE/23-347
LENGTH = 325 COMBINED P-VALUE = 2.55e-12 E-VALUE = 9.9e-11
DIAGRAM: 115-[2]-90-[3]-62
[2]
1.4e-06
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++ ++ ++ +++++++ +
76 MIHEECLTGYMGLGGTNFPQAIAMASTWDPDLIEKMTAAIREDMRKLGAHQGLAPVLDVARDPRWGRTEETFGES
[3]
6.8e-14
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++++++++++++ ++++++++++ +
226 SYSEIDGVPCAANRRLLTDILRKDWGFEGIVVSDYFAVNMLGEYHRIAKDKSESARLALEAGIDVELPKTDCYQH
P96316_9CELL/63-348
LENGTH = 286 COMBINED P-VALUE = 4.55e-12 E-VALUE = 1.8e-10
DIAGRAM: 90-[2]-85-[3]-53
[2]
4.6e-06
GRELRALGINMNFAPCVDVNNNPNNPVIG
+++ ++ ++++ ++ + + +
76 STWDPKVAYAGGAMIGSEARASGFNVMLAGGVNLQREPRNGRNFEYAGEDPLLAGTMIGQAIKGVESNRIISTLK
[3]
8.5e-13
ACMSHKIMTGLLRGEMGFQGV
+ ++ ++ +++ ++++++
151 HFVLNDQETGRNELDARIDKAALRMSDLLAMELALEQSDAGSVMCAYNRLNGPYTCEHPWLLSEVLKRDWGFRGY
IITDWMNM
+++++++
226 VMSDWGATHSTVAAANSGLDQQSGQEFDKSPYFGGALEEAVKTGAVPQKRLDDMVTRIVRT
BGLB_CLOTH/13-285
LENGTH = 273 COMBINED P-VALUE = 4.51e-11 E-VALUE = 1.8e-09
DIAGRAM: 137-[1]-28-[3]-50
[1]
9.5e-05
CAKHFPGHGDTDV
+++++ +
76 VGAALGEECQAENVSILLGPGANIKRSPLCGRNFEYFSEDPYLSSELAASHIKGVQSQGVGACLKHFAANNQEHR
[3]
6.1e-13
DSHYGLPVVNHSKERW ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+ + ++++ ++ + ++ +++ +++ ++ ++++++++++
151 RMTVDTIVDERTLREIYFASFENAVKKARPWVVMCAYNKLNGEYCSENRYLLTEVLKNEWMHDGFVVSDWGAVND
BGLS_RUMAL/465-761
LENGTH = 297 COMBINED P-VALUE = 1.05e-10 E-VALUE = 4.1e-09
DIAGRAM: 93-[2]-85-[3]-61
[2]
1.4e-07
GRELRALGINMNFAPCVDVNNNPNNPVIG
+ ++++ + + +++ ++ +++
76 LIAATFNKSLITELFTYLGLEMRANKVDCLLGPGMNIHRHPLNGRNFEYFSEDPFLTGTMAAAELEGLHSVGVEG
[3]
4.1e-11
ACMSHKIMTGLLRGEMGF
+ ++ + ++++++++
151 TIKHFCANNQETNRHFIDSVASERALREIYLKGFEIAVRKSKARSVMTTYGKVNGLWTAGSFDLNTMILRKQWGF
QGVIITDWMNM
++++++++ +
226 DGFTMTDWWANINDRGCAPDKNNFAAMVRAQNDVYMVCADGESGSDNVIAALADGRLTRAELQRSARNILSF
O24749_9PROT/49-335
LENGTH = 287 COMBINED P-VALUE = 2.26e-10 E-VALUE = 8.8e-09
DIAGRAM: 204-[3]-54
[3]
1.2e-13
ACMSHKIMTGLLRGEMGFQGV
++ ++ ++++ +++ +++ ++
151 HYAMNDLETSRMTMSADIDPVAMRESDLLGFEIALETGHPGAVMCSYNRVNDLYACENPYLLNKTLKQDWHYPGF
IITDWMNM
+++++++
226 VMSDWGATHSSARAALAGLDQESAGDHTDARPYFRTLLAADVKAGRVPEARINDMAERVVRA
O68843_STRAT/2-280
LENGTH = 279 COMBINED P-VALUE = 1.19e-09 E-VALUE = 4.6e-08
DIAGRAM: 188-[3]-62
[3]
2.2e-12
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++ + ++++++++++++++ + +++++
151 VNVDEQTLRERELPGFESAVAAGTGSVMCAYNKVNGQPACGSDELLNKVLKEQWKFRGWVTSDWLATQSTDALTK
BGLS_KLUMA/14-281
LENGTH = 268 COMBINED P-VALUE = 1.62e-09 E-VALUE = 6.3e-08
DIAGRAM: 187-[3]-52
[3]
4.1e-12
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
+++++++ ++++++++ ++ ++++ +
151 VSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGDHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKN
Q59716_PREBR/38-330
LENGTH = 293 COMBINED P-VALUE = 1.86e-09 E-VALUE = 7.3e-08
DIAGRAM: 212-[3]-52
[3]
2.3e-11
ACMSHKIMTGLLR
+ + ++++++++
151 QGVGVSAKHFAVNSQESDRTRVDERVSQRALRELYLKGFEIMVRKSAPWTLMSSYNRINGVYSQGNYDLLTKVLR
GEMGFQGVIITDWMNM
+ +++++++++++ +
226 QDWGFKGIVMTDWIGERADLPISDVVKAGNDLLMPGFPTQVNHIIEGVKSGKIDIKDVDRNVRNMLEY
O70021_SACER/45-319
LENGTH = 275 COMBINED P-VALUE = 7.74e-09 E-VALUE = 3e-07
DIAGRAM: 188-[3]-58
[3]
5.9e-13
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++ ++ +++ ++++++++++ +++++ +
151 VDVDQRTLRELELPGFEAAVAAGATSVMCAYPKVNGTHACGHRQLLTEILKEQWGFKGWVMSDWTATHATEDLVA
Q00025_AJECA/56-341
LENGTH = 286 COMBINED P-VALUE = 9.78e-09 E-VALUE = 3.8e-07
DIAGRAM: 74-[2]-98-[3]-56
[
7
G
+
1 TLVEKVNLTTGVGWMQENCVGQVGSIPRMGLHSLCMQDGPLGFDLPDYVSAFPAGVNVGATFSKELAYLRGKAMG
2]
.5e-05
RELRALGINMNFAPCVDVNNNPNNPVIG
++ + ++ + +++++ +
76 EEHRDKGVDVVLGPVVGPLGRSPDGGRNWEGFSPDPVNSGLLVAETIKGIQSAGVIACVKHFIGNEQERFRQGPE
[3]
9.9e-12
ACMSHKIMTGLLRGEMGFQGVIIT
+ ++ ++++++ ++++++++++
151 AQGYGFDISESSSSNIDDVTMHELYLWPFADAVRAGVGSVMCSYNQINNSYGCGNSYTQNKLLKAELGFQGFIMS
DWMNM
++ +
226 DWQAHHSGVGSALAGLDMSMPGDTVFGTGRSYWGPNLTIAVANGTIPEWRVDDMAVRIMAA
Q47912_9GAMM/80-405
LENGTH = 326 COMBINED P-VALUE = 2.68e-08 E-VALUE = 1e-06
DIAGRAM: 113-[2]-95-[3]-60
[2]
1.2e-05
GRELRALGINMNFAPCVDVNNNPNNPVIG
++++++ + + +++++ +
76 TDAVHGLGNVIGATLFPHNIGLGATNNPELLKQIGWATAREIAATGLDWYFSPTVAVARDDRWGRTYESWSEDPQ
[3]
3.7e-10
ACMSHKIMTGLLRGEMGFQGVIITDWMNM
++ ++ ++++++++ +++++++ ++ +
226 VMASFTSWEGTRMHGHKYLLTDVLKDLSGFDGLVVGDWSGHSFIPGCTALNCPQSLMAGLDIYMVPEPDWEELYK
Q92458_HYPJE/81-376
LENGTH = 296 COMBINED P-VALUE = 1.58e-01 E-VALUE = 6.2
DIAGRAM: 296
Debugging Information
CPU: kodomo.fbb.msu.ru
Time 0.016001 secs.
mast ./meme.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information