BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 24,446 sequences; 7,885,527 total letters Query= CLPX_ECOLI P0A6H1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subun... 712 0.0 sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subun... 617 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subun... 612 0.0 sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subun... 588 0.0 sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subun... 583 0.0 sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subun... 580 0.0 sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU O... 103 3e-24 sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU O... 97.1 4e-22 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 2e-21 sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU O... 94.0 4e-21 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU O... 93.2 1e-20 tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU... 92.0 2e-20 sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU O... 82.4 4e-17 tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-bin... 51.2 5e-07 tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding su... 50.1 1e-06 tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia... 46.2 2e-05 tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease... 45.8 2e-05 tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease... 45.4 3e-05 tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS... 44.7 6e-05 tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS... 44.3 7e-05 tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease... 43.9 8e-05 sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex s... 43.5 1e-04 sp|A1AZW1|RUVB_PARDP Holliday junction branch migration complex s... 43.1 1e-04 tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH OS... 43.1 2e-04 tr|Q9CKU5|Q9CKU5_PASMU ComM OS=Pasteurella multocida (strain Pm70... 41.6 5e-04 tr|A1BBJ2|A1BBJ2_PARDP ATP-dependent zinc metalloprotease FtsH OS... 41.6 5e-04 tr|A1AY35|A1AY35_PARDP Chaperone protein ClpB OS=Paracoccus denit... 41.6 6e-04 tr|Q12QI8|Q12QI8_SHEDO ATP-dependent zinc metalloprotease FtsH OS... 41.2 7e-04 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=clpX PE=3 SV=1 Length=426 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/425 (81%), Positives = 382/425 (90%), Gaps = 1/425 (0%) Query 1 MTDKRKDG-SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M D + +G SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECV+LCNDIIREEIKE++P R Sbjct 1 MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 + LPTPHE+RNHLD+YVIGQ++AKKVLAVAVYNHYKRLRNG T GVELGKSNILLIG Sbjct 61 DHDKLPTPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKRLRNGTTKEGVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLAR L+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQRG Sbjct 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TSKILFICGGAFAGL+KVI R TG+GIGFGA VK + DKA+ ++L QVEPEDL+K+G Sbjct 241 TSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKYG 300 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEFIGRLPVVATL EL E ALIQIL +PKNALTKQY ALF +E V+LEFR++AL AIA Sbjct 301 LIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAIA 360 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 KKAM+RKTGARGLRSIVE LLDTMYDLP+++ V K VIDESV+ G+S P+LIY + + Sbjct 361 KKAMSRKTGARGLRSIVEGILLDTMYDLPTVKGVVKAVIDESVVKGESDPILIYENNDTK 420 Query 420 QASGE 424 ASGE Sbjct 421 AASGE 425 >sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=clpX PE=3 SV=1 Length=423 Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/415 (73%), Positives = 358/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 +S LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V+KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKIS KSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L +VEPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLREVEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQYQ LF +E V+LE R +AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+++ V KV+ID++VI+G KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIY 413 >sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 >sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=clpX PE=3 SV=1 Length=424 Score = 588 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 289/407 (71%), Positives = 341/407 (84%), Gaps = 3/407 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SGIKARDGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + SN +EL KSNILL+GPTG GKT L Sbjct 70 EIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRK+DNPSITRDVSGEGVQQALLK++EGT+A+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGL+++IS R E S IGF ATVKA D+ GE+ +EPEDLIKFGLIPEFIGRL Sbjct 250 GAFAGLERIISGRGEKTS-IGFSATVKA-PDERCVGEIFRDLEPEDLIKFGLIPEFIGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 P+VATL +L AL+QIL +PKNAL KQYQ LF +E V+L F ++AL IAKKA+ RKTG Sbjct 308 PIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 ARGLRSI+E LL+TM++LP++E V+KVVI V+DG++ PL IY + Sbjct 368 ARGLRSIMEKILLETMFELPALEGVQKVVISSDVVDGKAHPLYIYSE 414 >sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=clpX PE=3 SV=1 Length=418 Score = 583 bits (1504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 287/422 (68%), Positives = 350/422 (83%), Gaps = 4/422 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M+ K D S LYCSFCGKSQHEV KLIAGP+V+IC+ECV+LC DIIRE+ + Sbjct 1 MSTKSGD-SKNTLYCSFCGKSQHEVVKLIAGPTVFICNECVELCMDIIRED-NRTHLVKT 58 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 R +PTP EI LDDYVIGQ+ AK++L+VAV+NHYKRL + +N +E+ KSNI+L+GP Sbjct 59 RDGVPTPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGI Sbjct 119 TGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA V+ +++ + G +L +VEPEDL+KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGADVRDPTEQRT-GAILREVEPEDLLKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL +L E ALI+IL +PKNAL KQY LF +EGV L F ++AL +A Sbjct 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 +A+ RKTGARGLRSI+E LL+TM+DLP ++ VE+VVI+ V +G++ PL ++GK A+ Sbjct 357 RAIQRKTGARGLRSIMENILLETMFDLPGLDSVEEVVINGEVAEGRANPLFLHGKERAET 416 Query 421 AS 422 S Sbjct 417 GS 418 >sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpX PE=3 SV=1 Length=421 Score = 580 bits (1495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/416 (71%), Positives = 346/416 (83%), Gaps = 5/416 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K A + +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSSA-LKSGDGVPTPR 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI N LDDYVIGQE AK+VL+VAV+NHYKRL N + +EL KSNILLIGPTG GKTLL Sbjct 68 EICNVLDDYVIGQEHAKRVLSVAVHNHYKRL-NHSSKTDIELAKSNILLIGPTGCGKTLL 126 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+DK Sbjct 127 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDK 186 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 I+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 187 ITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 246 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++I+ R G+ +GFGA VK DK GEL Q+EPEDL+KFGLIPEF+GRL Sbjct 247 GAFAGLDRIIAQR-NKGTAMGFGAAVKEDDDKGV-GELFKQLEPEDLLKFGLIPEFVGRL 304 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALI IL +PKNAL KQYQ LF+LE V L F ++AL AIAK+A+ RKTG Sbjct 305 PVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTG 364 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDG-QSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP M+ VE+VV++E +D +KPLLI+ + + AS Sbjct 365 ARGLRSIMEDILLDTMFDLPGMDSVEEVVVNEEAVDNPTAKPLLIHTDSKKETASA 420 >sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=hslU PE=3 SV=1 Length=435 Score = 103 bits (257), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 83/144 (58%), Gaps = 6/144 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T ++ LARL PF +AT TE GYVG DVE II+ L + ++ R DE Sbjct 64 TEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMR-----DE 118 Query 186 IDKISRKSDNPSITRDVSGEGVQQ 209 + + KS + ++GEG ++ Sbjct 119 VKARAHKSAEDRVVAALAGEGARE 142 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/233 (33%), Positives = 107/233 (46%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 + GIV+IDEIDK++ ++D DVS EGVQ+ LL LIEGT + ++ Sbjct 241 ENGIVFIDEIDKVAARTDARG--GDVSREGVQRDLLPLIEGTTVST-----------KYG 287 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 288 PVRTDHILFIASGAF--------H----------------------------IAKPSDLL 311 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE I+IL E NALT+QY AL EGV ++F + + Sbjct 312 -----PELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQDGIR 366 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A+ A GAR L +++E + + P E VV+D + ++ Sbjct 367 ALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSG-ETVVVDAAFVE 418 >sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=hslU PE=3 SV=1 Length=436 Score = 97.1 bits (240), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 111/237 (47%), Gaps = 65/237 (27%) Query 157 DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE 216 D + IIQ+ L+ + D GIV+IDEIDKI+ + S VS EGVQ+ LL L+E Sbjct 228 DQDQIIQEALRVAEND------GIVFIDEIDKIATRDGGASAA--VSREGVQRDLLPLVE 279 Query 217 GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA 276 GT A ++ Q+ T ILFI GAF V Sbjct 280 GTTIAT-----------KYGQIKTDHILFIASGAFH---------------------VSK 307 Query 277 KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQ 336 SD L+PE GRLP+ LN L+ E L +IL EP+ +L KQ Sbjct 308 PSD--------------------LLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQ 347 Query 337 YQALFNLEGVDLEFRDEALDAIAKKAM---AR--KTGARGLRSIVEAALLDTMYDLP 388 Y AL E V LE D+A+DA+A A+ AR GAR L++++E L + + P Sbjct 348 YIALMATEEVHLEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAP 404 Score = 90.1 bits (222), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (64%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P E + LD ++IGQ AK+ +A+A+ N ++R + D E+ NIL+IGPTG GK Sbjct 6 SPRETVSELDRFIIGQSDAKRSVAIALRNRWRR-QQLDGPMRDEVMPKNILMIGPTGVGK 64 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 65 TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVE 106 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=hslU PE=3 SV=1 Length=441 Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQ-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDL 103 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 94/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI ++ + DVS EGVQ+ LL L+EG + KH Sbjct 247 QNGIVFLDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +P DLI Sbjct 295 -VKTDHILFIASGAFQ------------------------------------MSKPSDLI 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L+ L+ +IL EP +LT+QY AL EGV + F + +D Sbjct 318 -----PELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATEGVTISFLESGID 372 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 +A+ A GAR L +++E + D +D Sbjct 373 KLAEAAWQVNERTENIGARRLHTVMEKLMEDISFD 407 >sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 >tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=hslU PE=3 SV=1 Length=439 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (5%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGV--ELGKSNILLIGPTGS 123 TP EI + LD +++GQ+ AK+ +A+A+ N ++R + G+ E+ NIL+IGPTG Sbjct 8 TPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQ---LPEGLREEVVPKNILMIGPTGC 64 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 GKT +A LA+L PF +AT TE GYVG DVE+I++ L++ Sbjct 65 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVE 108 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 113/251 (45%), Gaps = 58/251 (23%) Query 169 CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 228 D + GIV++DEIDKI ++++ DVS EGVQ+ LL LIEGT + Sbjct 235 ADARLHAETHGIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVST------ 288 Query 229 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLA 288 ++ V T ILFI GAF V SD Sbjct 289 -----KYGPVKTDHILFIASGAFH---------------------VAKPSD--------- 313 Query 289 QVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 348 L+PE GRLP+ L LS E +IL EP+++L KQY AL E VDL Sbjct 314 -----------LLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDL 362 Query 349 EFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 F D+A+DA+A A GAR L +++E LL+ + + E V +D +++ Sbjct 363 HFTDDAVDAVAALAADINDRVENIGARRLATVLE-RLLEEISFAATDRAGETVTVDAALV 421 Query 404 DGQSKPLLIYG 414 + + PL G Sbjct 422 NDKVAPLAARG 432 >sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 101/233 (43%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ ++ +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNHEGG-GGEVSRQGVQRDLLPLVEGTTI-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS + IL +L KQYQAL E V LEF D+ + Sbjct 324 -----PELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQALLATEDVKLEFADDGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E LL+ + + V ID + +D Sbjct 379 RLAEIAYAVNEKTENIGARRLYTVIE-KLLEEVSFAAGNHAGQSVTIDSAYVD 430 >tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-binding subunit OS=Yersinia pestis OX=632 GN=clpA PE=3 SV=1 Length=758 Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 79/322 (25%), Positives = 128/322 (40%), Gaps = 72/322 (22%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L+ V GQ++A + L+ A+ K R G +G + L GPTG GKT + Sbjct 451 LSDRLNMLVFGQDKAIEALSEAI----KMSRAGLGHERQPVG--SFLFAGPTGVGKTEVT 504 Query 130 ETLARLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQR 178 LA+ LD+ D + E GYVG D ++ V K Sbjct 505 VQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTD-------SVIKHPH 557 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 ++ +DEI+K + V LL++++ + GRK + + V Sbjct 558 AVLLLDEIEK--------------AHPDVFNLLLQVMDN--GTLTDNNGRKADFRNVILV 601 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T+ AG+ R + IGF K +S L + IK Sbjct 602 MTTN---------AGV------RETQRTSIGF------KQQDSSTDAL-------EEIKK 633 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PEF RL + N LS + Q++ + + QA + +GV LE DEA D + Sbjct 634 IFTPEFRNRLDNIIWFNHLSPAVIQQVV----DKFIVELQAQLDAKGVSLEVSDEARDWL 689 Query 359 AKKAMARKTGARGLRSIVEAAL 380 ++K + GAR + +++ L Sbjct 690 SEKGYDKAMGARPMTRVIQENL 711 >tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding subunit clpA OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=Pden_3812 PE=3 SV=1 Length=772 Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/315 (24%), Positives = 119/315 (38%), Gaps = 72/315 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A + L+ A+ LR + G N L GPTG GKT +A+ LA Sbjct 465 LKRLVFGQDAAIEALSSAIKLARAGLREPEKPIG------NYLFAGPTGVGKTEVAKQLA 518 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 L V D + E GYVG D ++ V + ++ Sbjct 519 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTD-------GVDQHPHCVLL 571 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 242 +DEI+K + V LL++++ + GR QVD Sbjct 572 LDEIEK--------------AHPDVYNILLQVMDH--GKLTDHNGR--------QVDFRN 607 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 ++ I + + + GFG + D A+ I+ P Sbjct 608 VILI-------MTSNAGAADQAKAAFGFGRERREGEDTAA-------------IERTFTP 647 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EF RL V + LS E ++Q++++ Q +A GV +E EA D +A++ Sbjct 648 EFRNRLDAVISFAPLSREIIVQVVEK----FVLQLEAQLIDRGVHIELTAEAADWLAERG 703 Query 363 MARKTGARGLRSIVE 377 K GAR L +++ Sbjct 704 YDEKMGARPLGRVIQ 718 >tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia pestis OX=632 GN=YPO3902 PE=3 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 >tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease FtsH OS=Yersinia pestis OX=632 GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease FtsH OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ftsH PE=3 SV=1 Length=715 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 192 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 245 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 246 KNAPCIIFIDEIDAVGR 262 >tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=ftsH PE=3 SV=1 Length=641 Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQG-----K 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 >tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=631 Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTLLA +A VPF + E +VG + Q +K Sbjct 191 LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 244 Query 176 AQRGIVYIDEIDKISR 191 + IV+IDEID + R Sbjct 245 SAPCIVFIDEIDAVGR 260 >tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease FtsH OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=ftsH PE=3 SV=1 Length=628 Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 190 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 244 KHAPCIVFIDEIDAVGR 260 >sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex subunit RuvB OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ruvB PE=3 SV=1 Length=361 Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 28/132 (21%) Query 63 ALPTPHE----IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 A+P P++ +R + D IGQE A+ L + + + + + ++L + Sbjct 12 AVPLPNDPDRSLRPQVLDDFIGQEAARANLKIFI----------EAAKARQEALDHVLFV 61 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GP G GKT L++ +A+ L V F + +AG + + N+ +R Sbjct 62 GPPGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNL--------------EER 107 Query 179 GIVYIDEIDKIS 190 +++IDEI ++S Sbjct 108 DVLFIDEIHRLS 119 >sp|A1AZW1|RUVB_PARDP Holliday junction branch migration complex subunit RuvB OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ruvB PE=3 SV=1 Length=341 Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/127 (30%), Positives = 57/127 (45%), Gaps = 30/127 (24%) Query 72 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAET 131 L+D+V GQ +A+ L V + + R + D + L GP G GKT LA+ Sbjct 25 QRLEDFV-GQAEARANLRVFIESARMRGKAMD----------HTLFHGPPGLGKTTLAQI 73 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 +AR L V F M L AG D+ I+ L R +++IDEI ++ Sbjct 74 MARELGVNFKMTSGPVLARAG----DLAAILTNL----------EARDVLFIDEIHRM-- 117 Query 192 KSDNPSI 198 NP++ Sbjct 118 ---NPAV 121 >tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH OS=Pasteurella multocida (strain Pm70) OX=272843 GN=ftsH PE=3 SV=1 Length=639 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 186 ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 239 Query 175 KAQRGIVYIDEIDKISRK 192 K +++IDEID + R+ Sbjct 240 KNAPCLIFIDEIDAVGRQ 257 >tr|Q9CKU5|Q9CKU5_PASMU ComM OS=Pasteurella multocida (strain Pm70) OX=272843 GN=comM PE=3 SV=1 Length=509 Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 54/193 (28%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE------IRNHLDDYVIGQ 81 L++ Y + +++ N + +A S LPT H+ + L D +IGQ Sbjct 148 LVSQQDTYFAQDLLEVVNFLNDHTTLPLA-----SELPTQHDPALLATTQKDLTD-IIGQ 201 Query 82 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFT 141 AK+ L +A G+ N+L +GP G+GKT+LA L LL Sbjct 202 SHAKRALTIAAA-----------------GQHNLLFLGPPGTGKTMLASRLTTLLP---E 241 Query 142 MADATTLTEAGYVG-----EDVENIIQKLLQKCDY-----------------DVQKAQRG 179 M D + A + N Q+ + + ++ A G Sbjct 242 MNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNG 301 Query 180 IVYIDEIDKISRK 192 ++++DE+ + RK Sbjct 302 VLFLDELPEFERK 314 >tr|A1BBJ2|A1BBJ2_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=610 Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/85 (31%), Positives = 44/85 (52%), Gaps = 6/85 (7%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A V F + E +VG ++ L ++ + Sbjct 192 VLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVEL-FVGVGAAR-VRDLFEQA----R 245 Query 175 KAQRGIVYIDEIDKISRKSDNPSIT 199 K+ I++IDE+D + R ++ T Sbjct 246 KSAPAIIFIDELDALGRARNSGQFT 270 >tr|A1AY35|A1AY35_PARDP Chaperone protein ClpB OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpB PE=3 SV=1 Length=875 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 79/348 (23%), Positives = 135/348 (39%), Gaps = 84/348 (24%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L VIGQ +A A+ N +R R G LG + L +GPTG GKT L + +A Sbjct 564 LSKRVIGQSEA----VTAISNAVRRARAGLNDPKRPLG--SFLFLGPTGVGKTELTKAIA 617 Query 134 RLL---DVPFTMADATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L D D + E GYVG D ++ + +++ Y V Sbjct 618 EYLFDDDSAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQV------ 671 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 + DE++K D ++ V +G +L +G GR VD Sbjct 672 -ILFDEVEKA--HPDVFNVLLQVLDDG------QLTDGQ--------GRT--------VD 706 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 + L + S +G A + A + A G+ AQV D ++ Sbjct 707 FKQTLIVL-----------------TSNLGAQA-LSALPEGADSGQARAQV--MDAVRAH 746 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 PEF+ RL + + L+ E + I++ Q + + L+ + AL +A Sbjct 747 FRPEFLNRLDEIIIFHRLTRENMDGIVR----IQLWQLETRLAQHKIGLDLDEAALKWLA 802 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 407 + GAR L+ +++ +L + + ++ ++ V+DGQ+ Sbjct 803 DEGYDPVFGARPLKRVMQRSLQNPLAEM---------ILAGEVLDGQT 841 >tr|Q12QI8|Q12QI8_SHEDO ATP-dependent zinc metalloprotease FtsH OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=ftsH PE=3 SV=1 Length=656 Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 + +L++G G+GKTLLA+ +A VPF + E +VG + Q Sbjct 191 TGVLMVGQPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ----- 244 Query 173 VQKAQRGIVYIDEIDKISRK 192 +K+ I++IDEID + R+ Sbjct 245 AKKSAPCIIFIDEIDAVGRQ 264 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1789680994 Database: proteomes.fasta Posted date: May 6, 2024 2:43 AM Number of letters in database: 7,885,527 Number of sequences in database: 24,446 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40