RID: 7BZYEUBH016 Job Title:prot Program: BLASTP Query: unnamed protein product ID: lcl|Query_45218(amino acid) Length: 859 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 1794 1794 100% 0.0 100.00 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 1741 1741 100% 0.0 96.62 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 656 656 96% 0.0 43.95 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 654 654 96% 0.0 43.63 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 654 654 96% 0.0 44.21 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 652 652 93% 0.0 44.34 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 652 652 94% 0.0 44.94 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 649 649 96% 0.0 43.80 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 648 648 94% 0.0 43.45 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 647 647 94% 0.0 44.32 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 644 644 96% 0.0 43.23 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 643 643 96% 0.0 42.77 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 640 640 96% 0.0 42.75 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 639 639 96% 0.0 42.99 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 639 639 96% 0.0 42.54 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 639 639 93% 0.0 43.84 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 636 636 93% 0.0 43.60 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 635 635 93% 0.0 43.47 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 628 628 96% 0.0 41.81 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 623 623 94% 0.0 42.65 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 621 621 96% 0.0 42.60 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 620 620 96% 0.0 41.69 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 619 619 96% 0.0 42.05 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 608 608 96% 0.0 41.32 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 607 607 96% 0.0 41.76 2467 P13896.3 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 89.0 89.0 32% 1e-16 28.91 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 70.5 70.5 32% 5e-11 27.42 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 66.6 66.6 32% 8e-10 27.00 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 62.4 62.4 30% 2e-08 27.21 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 57.0 57.0 31% 8e-07 25.52 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 55.5 55.5 29% 2e-06 26.42 1597 Q66220.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 562 to 1420 Score:1794 bits(4647), Expect:0.0, Method:Compositional matrix adjust., Identities:859/859(100%), Positives:859/859(100%), Gaps:0/859(0%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT Sbjct 562 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 621 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE Sbjct 622 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 681 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH Sbjct 682 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 741 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL Sbjct 742 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 801 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN Sbjct 802 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 861 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL Sbjct 862 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 921 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT Sbjct 922 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 981 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN Sbjct 982 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 1041 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS Sbjct 1042 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 1101 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV Sbjct 1102 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 1161 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR Sbjct 1162 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 1221 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL Sbjct 1222 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 1281 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT Sbjct 1282 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 1341 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYARTRKAYKMLAR 840 ARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYARTRKAYKMLAR Sbjct 1342 ARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYARTRKAYKMLAR 1401 Query 841 GSVADKVKVAEILNSMVGA 859 GSVADKVKVAEILNSMVGA Sbjct 1402 GSVADKVKVAEILNSMVGA 1420 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 563 to 1421 Score:1741 bits(4508), Expect:0.0, Method:Compositional matrix adjust., Identities:830/859(97%), Positives:844/859(98%), Gaps:0/859(0%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+TIIDCQRGTVKVITAFGDN MGEYLVLSPVTVLRTRKLA+LLGPLAEEVMQYVHKGRT Sbjct 563 GATIIDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRT 622 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYAIEKNNLKVLIPTGVSLKT HFQAL ESATLTYNDYLFTCRTLDQLATRGSA+NTDE Sbjct 623 GRYAIEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDE 682 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 VYYKLVDAAKA+DEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFA+EALRKRPAHTH Sbjct 683 VYYKLVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTH 742 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL Sbjct 743 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 802 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 YGAYRGAV+TLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN Sbjct 803 FYGAYRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 862 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL Sbjct 863 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 922 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVKDLK LYPHNELMTAAASQGLTREKVYAVRCRVT+NPLYEPTSEHITVLLTRT Sbjct 923 TCFRGWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRT 982 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN Sbjct 983 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 1042 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 TCWAVTSSRVLHEAGV ITPED+NRIFPAFREDKPHSALAALDAVA LVWGLDTSSGILS Sbjct 1043 TCWAVTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILS 1102 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV Sbjct 1103 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 1162 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 P+DP RVQVPINR+VPHVLVDTSAAAKPGFLENRL+VDRWDQVHSFKTRAAVKFAELTKR Sbjct 1163 PLDPARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKR 1222 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 VSYNSVLDLGAA GGVTDYCVKKGKTVT VSEQWD+KPRGAVV+TADINGPLNNLGIFDL Sbjct 1223 VSYNSVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLNNLGIFDL 1282 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 VFCDAAGPRRYHHYAQCEDHA TSACKHGVERTAKGGVFIVKAYGMADRRTERAVE T Sbjct 1283 VFCDAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGT 1342 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYARTRKAYKMLAR 840 ARYF+SVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYART KAYKMLAR Sbjct 1343 ARYFRSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYARTWKAYKMLAR 1402 Query 841 GSVADKVKVAEILNSMVGA 859 GSVADKVKVAEILNSMVGA Sbjct 1403 GSVADKVKVAEILNSMVGA 1421 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 534 to 1323 Score:656 bits(1692), Expect:0.0, Method:Compositional matrix adjust., Identities:367/835(44%), Positives:496/835(59%), Gaps:48/835(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR Sbjct 534 GAGSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCI-HPLAEQVIVITHSGRK 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE Sbjct 593 GRYAVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YY++V ++ + EY+Y++ KQCVKKE +G L G++ +PP+H+FA+E+LR RPA + Sbjct 653 EYYRVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 713 QVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSV 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+N Sbjct 773 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTKP K+ L+L Sbjct 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLIL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D++VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N Sbjct 952 EDKIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKAN 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1011 VCWAKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L Sbjct 1070 APTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRA---YDMNTGTLR 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 DP VP+NR +PH LV A P F+ + Sbjct 1127 NYDPRINLVPVNRRLPHALVTQHADYPPS-----------------------DFSAFVSK 1163 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 + +VL +G GKTV +SE DS R + D+ P + L +D+ Sbjct 1164 LKGRTVLVVGEKMS-------ISGKTVDWLSETPDSTFRARL----DLGIP-SELPKYDI 1211 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 VF + RYHHY QCEDHA + + K GG + YG ADR +E + Sbjct 1212 VFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAV 1271 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIYARTR 832 AR FK V KP S+ EV F F G + R H + L LT+IY +R Sbjct 1272 ARQFKFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 533 to 1323 Score:654 bits(1688), Expect:0.0, Method:Compositional matrix adjust., Identities:370/848(44%), Positives:500/848(58%), Gaps:76/848(8%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ R +KV D+ +G YL+LSP TVL++ KLA + PLAE+V H GR+ Sbjct 533 GAGVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPI-HPLAEQVTVMTHSGRS 591 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY ++K + +VLIPTG ++ + FQAL+ESAT+ YN+ F R L +A G A NTDE Sbjct 592 GRYPVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDE 651 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V A +A+ EYV+++ K C+KKE+A+G VL GD+ NPP+H+FA+E L+ RPA + Sbjct 652 ESYEKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPY 711 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VTTRDLVASGKKENC++I V +RGL + ARTVDS+ Sbjct 712 HTTIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSI 771 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+ LYVDEA+ACHSGTLLALIA VRP+GKVVLCGDPKQ G N +Q+++HYN Sbjct 772 LLNGCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I RVL K+ISRRCT +TAIVS L+Y+G+M+TTN C P+ IDTTGS+KP +VL Sbjct 832 HNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY P SEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 + LVWKTL DP I +L+ P+GD+SAT+E+W++EH+GI+ L E F K Sbjct 952 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPF-QNKAK 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA +VL AG+ +T +++N I AFRED+ +S AL+ + +G+D SG+ S Sbjct 1011 VCWAKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + EN+HW N G YG N + Y P + + G + ++ KL Sbjct 1070 AQSVSLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNS--GLQ-LNVPERKLQ 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 P VP NR +PH LV Sbjct 1127 PFSAECNIVPSNRRLPHALV---------------------------------------- 1146 Query 661 VSYNSVLDLGAARGGVTDYCVKK--GKTVTCVSEQ----------WDSKPR--GA-VVIT 705 SY RG ++ +KK G + VSE W + PR GA Sbjct 1147 TSYQQ------CRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSGADRTYD 1200 Query 706 ADINGPLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKA 765 D+ P+ + G +DLVF + R HHY QC DH+ R + GG +++A Sbjct 1201 LDLGLPM-DAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGSLLMRA 1259 Query 766 YGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFFKFS----GRCRPHARSIAHLG 821 YG ADR +E V AR F + V +P + +N EVF FS GR A ++ Sbjct 1260 YGYADRVSEMVVTALARKFSAFRVLRP-ACVTSNTEVFLLFSNFDNGR---RAVTLHQAN 1315 Query 822 PQLTDIYA 829 +L+ +YA Sbjct 1316 QKLSSMYA 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 533 to 1323 Score:654 bits(1688), Expect:0.0, Method:Compositional matrix adjust., Identities:370/837(44%), Positives:504/837(60%), Gaps:54/837(6%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ R +KV D+ +G YL+LSP TVL++ KLA + PLAE+V H GR+ Sbjct 533 GAGVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPI-HPLAEQVTVMTHSGRS 591 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY ++K + +VLIPTG ++ + FQAL+ESAT+ YN+ F R L +A G A NTDE Sbjct 592 GRYPVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDE 651 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V A +A+ EYV+++ K C+KKE+A+G VL GD+ NPP+H+FA+E L+ RPA + Sbjct 652 ESYEKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPY 711 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VTTRDLVASGKKENC++I V +RGL + ARTVDS+ Sbjct 712 HTTIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSI 771 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+ LYVDEA+ACHSGTLLALIA VRP+GKVVLCGDPKQ G N +Q+++HYN Sbjct 772 LLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I RVL K+ISRRCT +TAIVS L+Y+G+M+TTN C P+ IDTTGS+KP +VL Sbjct 832 HNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY P SEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 + LVWKTL DP I +L+ P+GD+SAT+E+W +EH+GI+ L E F K Sbjct 952 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPF-QNKAK 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA +VL AG+ +T +++N I AFRED+ +S AL+ + +G+D SG+ S Sbjct 1011 VCWAKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + EN+HW N G YG N + Y P + + G + ++ KL Sbjct 1070 AQSVSLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNS--GLQ-LNVPERKLQ 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 P VP NR +PH LV + + +E W L K+ Sbjct 1127 PFSAECNIVPSNRRLPHALVTSYQQCRGERVE-------W----------------LLKK 1163 Query 661 VSYNSVLDLGAARGGVTDY-CVKKGKTVTCVSEQWDSKPR--GA-VVITADINGPLNNLG 716 + + +L V++Y V K V W + PR GA D+ P+ + G Sbjct 1164 IPGHQML-------LVSEYNLVIPHKRVF-----WIAPPRVSGADRTYDLDLGLPM-DAG 1210 Query 717 IFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERA 776 +DLVF + R HHY QC DH+ R + GG +++AYG ADR +E Sbjct 1211 RYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGSLLMRAYGYADRVSEMV 1270 Query 777 VECTARYFKSVSVEKPVSSRITNVEVFFKFS----GRCRPHARSIAHLGPQLTDIYA 829 V AR F + V +P + +N EVF FS GR A ++ +L+ +YA Sbjct 1271 VTALARKFSAFRVLRP-ACVTSNTEVFLLFSNFDNGR---RAVTLHQANQKLSSMYA 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 532 to 1300 Score:652 bits(1683), Expect:0.0, Method:Compositional matrix adjust., Identities:364/821(44%), Positives:489/821(59%), Gaps:66/821(8%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G +++ R ++KV T GD +G YL+LSP VLR+ KLA + LAE+V H GR+ Sbjct 532 GEGVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHD-LAEQVKLVTHSGRS 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA++K +VL+PTGV++ FQAL+ESATL YN+ F R L +A G+A NTDE Sbjct 591 GRYAVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V +A+ +YV+++ K C+KKE A+G VL G++ NPP+H+FA+E LR RP+ + Sbjct 651 EGYEKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPY 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 VHT+G+YGVPG+GK+AII VT DLV SGKKENC +I VL+ R L+I A+TVDS+ Sbjct 711 KVHTVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSV 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + + LY+DEA++CH+GTLLA IA VRP KVVLCGDPKQ G N +Q++++YN Sbjct 771 LLNGVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYN 830 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H+I V K+ISRRCT +TAIVS L+Y+ RM+TTNP K ++IDTTG+TKP K L+L Sbjct 831 HDICSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLIL 890 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+ Y NE+MTAAASQGLTR VYAVR +V NPLY TSEH+ VLLTRT Sbjct 891 TCFRGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRT 950 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 ++LVWKTL DP I L+ PP+G Y+AT+ +WE EH GI+ A+ + P +N K N Sbjct 951 ENKLVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAI-QGYAPPVNTFMNKVN 1009 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA T + VL AG+ ++ ED++ + P F +D +S AL+ + ++G D +G+ S Sbjct 1010 VCWAKTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 M HW N G YG + A + +P + RGRE ++G + Sbjct 1070 RPSVPMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYL-------RGRE----KSGMQI 1118 Query 601 PMDPGRVQ--------VPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAV 652 + R+Q +PINR +PH LV T H ++ RAA Sbjct 1119 VVTEMRIQRPRSDANIIPINRRLPHSLVAT---------------------HEYR-RAAR 1156 Query 653 KFAELTKRVSYNSVLDLGAARGGVTDYCVK-KGKTVTCVSEQWDSKPRG--AVVITADIN 709 T Y +L V++Y + K +T ++ P G TA++N Sbjct 1157 AEEFFTTTRGYTMLL--------VSEYNMNLPNKKITWLA------PIGTQGAHHTANLN 1202 Query 710 ---GPLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAY 766 PL LG FD V + P R HHY QCEDHA + + GG VKAY Sbjct 1203 LGIPPL--LGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGGSLWVKAY 1260 Query 767 GMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFFKFS 807 G ADR +E V AR FKS V +P S +N EVF FS Sbjct 1261 GYADRHSEHVVLALARKFKSFRVTQP-SCVTSNTEVFLHFS 1300 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 534 to 1303 Score:652 bits(1683), Expect:0.0, Method:Compositional matrix adjust., Identities:364/810(45%), Positives:489/810(60%), Gaps:42/810(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ II+ RG +KV D+ +GEYLVLSP TVLR++KL+ L+ LAE+V H GR Sbjct 534 GAGIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLS-LIHALAEQVKTCTHSGRA 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + +VL+P+G ++ FQ+L+ESAT+ YN+ F R L +A G A NTDE Sbjct 593 GRYAVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+LV A + + EYVY++ ++C KKE+A G VL GD+ NPPYH+FA+E L+ RPA + Sbjct 653 ESYELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 + IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +RGL+I+ARTVDSL Sbjct 713 KIAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSL 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L VD LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YN Sbjct 773 LLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYN 832 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I +V K+ISRRCT +TAIVS+L+YEG+M+TTN KP+++DTTGSTKPD LVL Sbjct 833 HNICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 892 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 893 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFA--HGK 478 +LVWKTL DP I L PPKG++ AT+++WE EH I+A + C +M F K Sbjct 953 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGI---CSHQMTFDTFQNK 1009 Query 479 RNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGI 538 N CWA + +L AG+ + +++I AF+EDK +S AL+ + ++G+D SG+ Sbjct 1010 ANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGL 1069 Query 539 LSGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGK 598 S + ++HW N G +G N +A E P K + C + T + Sbjct 1070 FSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYP-FTKGKWNINKQIC--VTTRR 1126 Query 599 LVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELT 658 + +P +P NR +PH LV K +E V++ + H + A T Sbjct 1127 IEDFNPTTNIIPANRRLPHSLVAEHRPVKGERME--WLVNKINGHHVLLV-SGCSLALPT 1183 Query 659 KRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIF 718 KRV++ V LG RG Y ++ G T LG + Sbjct 1184 KRVTW--VAPLG-VRGADYTYNLELGLPAT--------------------------LGRY 1214 Query 719 DLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVE 778 DLV + P R HHY QC DHA + + GG +++AYG ADR +ER + Sbjct 1215 DLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVIC 1274 Query 779 CTARYFKSVSVEKPVSSRITNVEVFFKFSG 808 R F+S KP +N E+FF FS Sbjct 1275 VLGRKFRSSRALKP-PCVTSNTEMFFLFSN 1303 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 534 to 1319 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:364/831(44%), Positives:491/831(59%), Gaps:48/831(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR Sbjct 534 GAGSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCI-HPLAEQVIVITHSGRK 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE Sbjct 593 GRYAVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YY++V ++ + EY+Y++ KQCVKKE +G L G++ +PP+H+FA+E+LR RPA + Sbjct 653 EYYRVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 713 QVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSV 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+N Sbjct 773 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTK KE L+L Sbjct 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLIL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D++VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N Sbjct 952 EDKIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKAN 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1011 VCWAKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L Sbjct 1070 APTVPLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGR---VYDMNTGTLR 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 DP VP+NR +PH LV A P F+ + Sbjct 1127 NYDPRINLVPVNRRLPHALVTQHADHPPS-----------------------DFSAFVSK 1163 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 + +VL +G GK V +SE D+ R + D+ P L +D+ Sbjct 1164 LKGRTVLVVGEKMN-------ISGKAVDWLSETPDATFRARL----DLGIP-TELPKYDI 1211 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 VF + RYHHY QCEDHA + + K GG + YG ADR +E + Sbjct 1212 VFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAV 1271 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIY 828 AR FK V KP S+ EV F F G + R H + L LT+IY Sbjct 1272 ARQFKFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIY 1319 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 532 to 1300 Score:648 bits(1672), Expect:0.0, Method:Compositional matrix adjust., Identities:358/824(43%), Positives:493/824(59%), Gaps:71/824(8%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ R +KV D +G YL+LSP TVL++ KL + PLAE+V H GR+ Sbjct 532 GAGVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPI-HPLAEQVTIMTHSGRS 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY +++ + +VL+PTG ++ + FQAL+ESAT+ YN+ F R L +A G A NTDE Sbjct 591 GRYPVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V A +A+ EYV+++ + CVK+EDA+G VL GD+ NPP+H+FA+E L+ RPA Sbjct 651 ENYEKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPF 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII + VTTRDLVASGKKENC++I V ++RGL + ARTVDS+ Sbjct 711 QTTVIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSI 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L R V+ LYVDEA+ACHSGTLLALIA V+PTGKV+LCGDPKQ G N +Q+++++N Sbjct 771 LLNGCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFN 830 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H+I +VL K+ISRRCT +TAIVS L+Y+G+M+TTN C P+ IDTTG+TKP K +VL Sbjct 831 HDICTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVL 890 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFR WVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY P+SEH+ VLLTRT Sbjct 891 TCFRXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRT 950 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 + LVWKTL DP I +L+ PKGD+SAT+E+W++EH+ I+ ALRE F K Sbjct 951 ENRLVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPF-QNKAK 1009 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA +VL AG+ +T E+++ + AFRED+ +S AL+ + +G+D SG+ S Sbjct 1010 VCWAKCLVQVLETAGIRMTAEEWDTVL-AFREDRAYSPEVALNEICTKYYGVDLDSGLFS 1068 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + EN+HW N G YG N + +E P + RG+ Sbjct 1069 AQSVSLYYENNHWDNRPGGRMYGFNREVARKFEQRYPFL-------RGK----------- 1110 Query 601 PMDPG-RVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTK 659 MD G +V VP +V P A L + Sbjct 1111 -MDSGLQVNVPERKVQPF-------------------------------NAECNILLLNR 1138 Query 660 RVSYNSVLDLGAARGGVTDYCVKK--GKTVTCVSEQ----------WDSKPR--GA-VVI 704 R+ + V RG ++ +KK G + VSE W + P GA + Sbjct 1139 RLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAPPHVSGADRIY 1198 Query 705 TADINGPLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVK 764 D+ PL N G +DLVF + R HHY QC DH+ + + GG +++ Sbjct 1199 DLDLGLPL-NAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGGSLLIR 1257 Query 765 AYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFFKFSG 808 AYG ADR +E V AR F + V +P + +N EVF F+ Sbjct 1258 AYGYADRVSEMVVTALARKFSAFRVLRP-ACVTSNTEVFLLFTN 1300 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 534 to 1303 Score:647 bits(1668), Expect:0.0, Method:Compositional matrix adjust., Identities:359/810(44%), Positives:486/810(60%), Gaps:42/810(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ II+ RG +KV D+ +GEYLVLSP TVLR++KL+ L+ LAE+V H GR Sbjct 534 GAGIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLS-LIHALAEQVKTCTHSGRA 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + ++L+P+G ++ FQ+L+ESAT+ YN+ F R L +A G A NTDE Sbjct 593 GRYAVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+LV A + + EYVY++ ++C KKE+A G VL GD+ NPPYH+FA+E LR RPA + Sbjct 653 ESYELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSL Sbjct 713 KTAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSL 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L VD LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YN Sbjct 773 LLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYN 832 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I +V K+ISRRCT +TAIVS+L+YEG+M+TTN KP+++DTTGSTKPD LVL Sbjct 833 HNICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 892 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 893 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFA--HGK 478 +LVWKTL DP I L PPKG++ AT+++WE EH I+A + C ++ F K Sbjct 953 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGI---CNHQVTFDTFQNK 1009 Query 479 RNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGI 538 N CWA + +L AG+ + +++I AF+ED+ +S AL+ + ++G+D SG+ Sbjct 1010 ANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGL 1069 Query 539 LSGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGK 598 S + ++HW N G +G N +A E P K + C + T + Sbjct 1070 FSKPLVSVHYADNHWDNRPGGKMFGFNPEAASILERKYP-FTKGKWNTNKQIC--VTTRR 1126 Query 599 LVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELT 658 + +P +P NR +PH LV K +E V++ + H + T Sbjct 1127 IEDFNPNTNIIPANRRLPHSLVAEHRPVKGERME--WLVNKINGHHVLLV-SGYNLVLPT 1183 Query 659 KRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIF 718 KRV++ + L + RG Y ++ G T LG + Sbjct 1184 KRVTWVAPLGI---RGADYTYNLELGLPAT--------------------------LGRY 1214 Query 719 DLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVE 778 DLV + P R HHY QC DHA + + GG +++AYG ADR +ER V Sbjct 1215 DLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVVC 1274 Query 779 CTARYFKSVSVEKPVSSRITNVEVFFKFSG 808 R F+S KP +N E+FF FS Sbjct 1275 VLGRKFRSSRALKP-PCVTSNTEMFFLFSN 1303 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 534 to 1323 Score:644 bits(1660), Expect:0.0, Method:Compositional matrix adjust., Identities:361/835(43%), Positives:497/835(59%), Gaps:48/835(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG +KV + G++ +G Y VLSP VL++ KL+ + PLAE+V+ H GR Sbjct 534 GAGSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCI-HPLAEQVIVITHSGRK 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE Sbjct 593 GRYAVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK V ++ EY+Y++ KQCVKKE TG L G++ +PP+H+FA+E+LR RPA + Sbjct 653 EYYKTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 713 QVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSV 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+N Sbjct 773 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI +V K+ISRRCT ++T++VS L Y+ RM+TTNP + ++IDTTGSTKP ++ L+L Sbjct 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLIL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D +VWKTL DP I IL+ G+++AT+E+W+ EH+ I+ + E P F K N Sbjct 952 EDRIVWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVF-QNKAN 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ +T E +N + F DK HSA L+ + +GLD SG+ S Sbjct 1011 VCWAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L Sbjct 1070 APTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGR---VYDMNTGTLR 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 DP VP+NR +PH LV +H F+ + Sbjct 1127 NYDPRINLVPVNRRLPHALV----------------------LH-HNEHPQSDFSSFVSK 1163 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 + +VL +G + GK V +S+Q ++ R + D+ P ++ +D+ Sbjct 1164 LKGRTVLVVG-------EKLSVPGKKVDWLSDQPEATFRARL----DLGIP-GDVPKYDI 1211 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 VF + P +YHHY QCEDHA + + K GG + YG ADR +E + Sbjct 1212 VFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 1271 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIYARTR 832 AR FK V KP SS EV F F G + R H + L LT+IY +R Sbjct 1272 ARQFKFSRVCKPKSSH-EETEVLFVFIGYDRKARTH--NPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 539 to 1342 Score:643 bits(1658), Expect:0.0, Method:Compositional matrix adjust., Identities:361/844(43%), Positives:496/844(58%), Gaps:52/844(6%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ RG V++I D +G+Y+V+SP +VL+ KLA PLA++V H GR Sbjct 539 GAALVETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPA-HPLADQVKIITHSGRA 597 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KVL+P G ++ F AL+ESATL YN+ F R L +A G AKNT+E Sbjct 598 GRYAVEPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEE 657 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YK+ A A+ EYV+++ K+CVKKE+A+G VL G++ NPPYH+ A E L+ RPA + Sbjct 658 EQYKVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPY 717 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+ G PG+GK+AII + VT RDLV SGKKENC +I+ VL RG++I ++TVDS+ Sbjct 718 KVETIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSV 777 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 + AV+ LYVDEA+ACH+G LLALIA VRP KVVLCGDPKQ G N +Q+++H+N Sbjct 778 MLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFN 837 Query 301 H---EISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEA 357 H +I + K ISRRCT +TAIVS L+Y+G+MKTTNPCKK + ID TG+TKP Sbjct 838 HPERDICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGD 897 Query 358 LVLTCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLL 417 ++LTCFRGWVK L+I YP +E+MTAAASQGLTR+ VYAVR +V N LY TSEH+ VLL Sbjct 898 IILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLL 957 Query 418 TRTNDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHG 477 TRT D LVWKTL DP I L+ PKG++ AT+EDWE EH GI+AA+ PR N Sbjct 958 TRTEDRLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSP-APRTNPFSC 1016 Query 478 KRNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSG 537 K N CWA +L AG+++T ++ +FP F +DKPHSA+ ALD + +G+D +SG Sbjct 1017 KTNVCWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSG 1076 Query 538 ILSGKGSFMRLEN-------SHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRE 590 + S + + +HW NS +YG D E++ R + Sbjct 1077 LFSKQSIPLTYHPADSARPVAHWDNSPGTRKYG--YDHAVAAELS--RRFPVFQLAGKGT 1132 Query 591 CYDIETGKLVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRA 650 D++TG+ + VP+NR +PH LV +PG +E L+ + HS + Sbjct 1133 QLDLQTGRTRVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKH---HSVLVVS 1189 Query 651 AVKFAELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADING 710 K KR+ + + +G A G +Y + G + + R Sbjct 1190 EEKIEAPHKRIEW--IAPIGIA-GADKNYNLAFG---------FPPQAR----------- 1226 Query 711 PLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMAD 770 +DLVF + R HH+ QCEDHA + + + GG +VK+YG AD Sbjct 1227 -------YDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYAD 1279 Query 771 RRTERAVECTARYFKSVSVEKP--VSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIY 828 R +E V AR F VS +P VSS T + + F+ R + HL ++ +Y Sbjct 1280 RNSEDVVTALARKFVRVSAARPECVSSN-TEMYLIFRQLDNSRTRQFTPHHLNCVISSVY 1338 Query 829 ARTR 832 TR Sbjct 1339 EGTR 1342 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 534 to 1323 Score:640 bits(1650), Expect:0.0, Method:Compositional matrix adjust., Identities:357/835(43%), Positives:494/835(59%), Gaps:48/835(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG +KV + G++ +G Y VLSP VL++ KL+ + PLAE+V+ H GR Sbjct 534 GAGSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCI-HPLAEQVIVITHSGRK 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE Sbjct 593 GRYAVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK V ++ EY+Y++ KQCVKKE TG L G++ +PP+H+FA+E+LR RPA + Sbjct 653 EYYKTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 713 QVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSV 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+N Sbjct 773 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI +V K+ISRRCT ++T++VS L Y+ +M+TTNP + ++IDTTGSTKP ++ L+L Sbjct 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLIL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D +VWKTL DP I L+ G+++AT+E+W+ EH+ I+ + E P F K N Sbjct 952 EDRIVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVF-QNKAN 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ +T E +N + F DK HSA L+ + +GLD SG+ S Sbjct 1011 VCWAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L Sbjct 1070 APTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGR---VYDMNTGTLR 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 DP VP+NR +PH LV +H F+ + Sbjct 1127 NYDPRINLVPVNRRLPHALV----------------------LH-HNEHPQSDFSSFVSK 1163 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 + +VL +G + GK V +S+ +P D+ P ++ +D+ Sbjct 1164 LKGRTVLVVG-------EKLSVPGKMVDWLSD----RPEATFRARLDLGIP-GDVPKYDI 1211 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 +F + P +YHHY QCEDHA + + K GG + YG ADR +E + Sbjct 1212 IFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 1271 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIYARTR 832 AR FK V KP SS + EV F F G + R H + L LT+IY +R Sbjct 1272 ARQFKFSRVCKPKSS-LEETEVLFVFIGYDRKARTH--NPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 534 to 1323 Score:639 bits(1648), Expect:0.0, Method:Compositional matrix adjust., Identities:359/835(43%), Positives:493/835(59%), Gaps:48/835(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG +KV + G++ +G Y VLSP VL++ KL+ + PLAE+V+ H GR Sbjct 534 GAGSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCI-HPLAEQVIVITHSGRK 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE Sbjct 593 GRYAVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK V ++ EY+Y++ KQCVKKE TG L G++ +PP+H+FA+E+LR RPA + Sbjct 653 EYYKTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V +GL + ARTVDS+ Sbjct 713 QVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSV 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+N Sbjct 773 LLNGCKYPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFN 831 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI +V K+ISRRCT ++T++VS L Y+ RM+TTNP + + IDTTGSTKP ++ L+L Sbjct 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLIL 891 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 892 TCFRGWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRT 951 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D +VWKTL DP I L+ G+++AT+E+W+ EH+ I+ + E P F K N Sbjct 952 EDRIVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVF-QNKAN 1010 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ +T E +N + F DK HSA L+ + +GLD SG+ S Sbjct 1011 VCWAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFS 1069 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L Sbjct 1070 APTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGR---VYDMNTGTLR 1126 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 DP VP+NR +PH LV +H F+ + Sbjct 1127 NYDPRINLVPVNRRLPHALV----------------------LH-HNEHPQSDFSSFVSK 1163 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 + +VL +G + GKTV +S+ +P D+ P ++ +D+ Sbjct 1164 LKGRTVLVVG-------EKLSVPGKTVDWLSD----RPEATFRARLDLGIP-GDVPKYDI 1211 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 +F + P +YHHY QCEDHA + + K GG + YG ADR +E + Sbjct 1212 IFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 1271 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIYARTR 832 AR FK V KP SS + EV F F G + R H + L LT+IY +R Sbjct 1272 ARQFKFSRVCKPKSS-LEETEVLFVFIGYDRKARTH--NPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 539 to 1342 Score:639 bits(1647), Expect:0.0, Method:Compositional matrix adjust., Identities:359/844(43%), Positives:496/844(58%), Gaps:52/844(6%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ RG V++I D +G+Y+V+SP +VL+ KLA PLA++V H GR+ Sbjct 539 GAALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPA-HPLADQVKIITHSGRS 597 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + KVL+P G ++ F AL+ESATL YN+ F R L +A G AKNT+E Sbjct 598 GRYAVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEE 657 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YK+ A A+ EYV+++ K+CVKKE+A+G VL G++ NPPYH+ A E L+ RPA + Sbjct 658 EQYKVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPY 717 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+ G PG+GK+AII + VT RDLV SGKKENC +I+ VL RG++I ++TVDS+ Sbjct 718 KVETIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSV 777 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 + AV+ LYVDEA+ACH+G LLALIA VRP KVVLCGDP Q G N +Q+++H+N Sbjct 778 MLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFN 837 Query 301 H---EISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEA 357 H +I + K ISRRCT +TAIVS L+Y+G+MKTTNPCKK + ID TG+TKP Sbjct 838 HPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGD 897 Query 358 LVLTCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLL 417 ++LTCFRGWVK L+I YP +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLL Sbjct 898 IILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLL 957 Query 418 TRTNDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHG 477 TRT D LVWKTL DP I + PKG++ AT+EDWE EH GI+AA+ PR N Sbjct 958 TRTEDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSP-TPRANPFSC 1016 Query 478 KRNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSG 537 K N CWA +L AG+++T ++ +FP F +DKPHSA+ ALD + +G+D +SG Sbjct 1017 KTNVCWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSG 1076 Query 538 ILSGKGSFMRLEN-------SHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRE 590 + S + + +HW NS +YG D E++ R + Sbjct 1077 LFSKQSIPLTYHPADSARPVAHWDNSPGTRKYG--YDHAIAAELS--RRFPVFQLAGKGT 1132 Query 591 CYDIETGKLVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRA 650 D++TG+ + VP+NR +PH LV +PG ++ L+ + HS + Sbjct 1133 QLDLQTGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKH---HSVLVVS 1189 Query 651 AVKFAELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADING 710 K KR+ + + +G A G +Y + G + + R Sbjct 1190 EEKIEAPRKRIEW--IAPIGIA-GADKNYNLAFG---------FPPQAR----------- 1226 Query 711 PLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMAD 770 +DLVF + R HH+ QCEDHA + + + GG +VK+YG AD Sbjct 1227 -------YDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYAD 1279 Query 771 RRTERAVECTARYFKSVSVEKP--VSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIY 828 R +E V AR F VS +P VSS T + + F+ R + HL ++ +Y Sbjct 1280 RNSEDVVTALARKFVRVSAARPDCVSSN-TEMYLIFRQLDNSRTRQFTPHHLNCVISSVY 1338 Query 829 ARTR 832 TR Sbjct 1339 EGTR 1342 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 534 to 1302 Score:639 bits(1647), Expect:0.0, Method:Compositional matrix adjust., Identities:356/812(44%), Positives:483/812(59%), Gaps:48/812(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ I++ RG +KV D +GEYLVL+P VLR++KL+ L+ LAE+V H GR Sbjct 534 GAGIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLS-LIHALAEQVKTCTHSGRA 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + +VL+P+G ++ FQ+L+ESAT+ +N+ F R L +A G A NTDE Sbjct 593 GRYAVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+LV K + EYVY++ K+C K+E+ATG VL GD+ +PPYH+FA+E L+ RPA + Sbjct 653 ESYELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSL Sbjct 713 KTAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSL 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L V+ LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YN Sbjct 773 LLNGCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYN 832 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I +V K+ISRRCT +TAIVS+L+YE +M+TTN +P+++DTTG TKP+ LVL Sbjct 833 HNICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVL 892 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRT 952 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFA--HGK 478 +L WKTL DP I IL PPKGD+ AT+++WE EH I+A + C +M F K Sbjct 953 EGKLTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGI---CNHQMAFDTFQNK 1009 Query 479 RNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGI 538 N CWA +L AG+ ++ +++I AF+ED+ +S AL+ + ++G+D SG+ Sbjct 1010 ANVCWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGL 1069 Query 539 LSGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGK 598 S + ++HW N G +G N + E P K + C I T K Sbjct 1070 FSKPLISVYYADNHWDNRPGGKMFGFNPEVALMLEKKYP-FTKGKWNINKQIC--ITTRK 1126 Query 599 LVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLE---NRLSVDRWDQVHSFKTRAAVKFA 655 + +P +P NR +PH LV + + +E N++S H + Sbjct 1127 VDEFNPETNIIPANRRLPHSLVAEHHSVRGERMEWLVNKIS------GHHMLLVSGHNLI 1180 Query 656 ELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNL 715 TKRV++ V LG RG Y ++ G T L Sbjct 1181 LPTKRVTW--VAPLG-TRGADYTYNLELGLPAT--------------------------L 1211 Query 716 GIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTER 775 G +DLV + P R HHY QC DHA + + GG +++AYG ADR +ER Sbjct 1212 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSER 1271 Query 776 AVECTARYFKSVSVEKPVSSRITNVEVFFKFS 807 + R F+S KP +N E+FF FS Sbjct 1272 VISVLGRKFRSSRALKP-QCITSNTEMFFLFS 1302 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 534 to 1302 Score:636 bits(1641), Expect:0.0, Method:Compositional matrix adjust., Identities:354/812(44%), Positives:483/812(59%), Gaps:48/812(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ I++ RG +KV D +GEYLVL+P VLR++KL+ L+ LAE+V H GR Sbjct 534 GAGIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLS-LIHALAEQVKTCTHSGRA 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + +VL+P+G ++ FQ+L+ESAT+ +N+ F R L +A G A NTDE Sbjct 593 GRYAVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+LV K + EYVY++ K+C K+E+ATG VL GD+ +PPYH+FA+E L+ RPA + Sbjct 653 ESYELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSL Sbjct 713 KTAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSL 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L V+ LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YN Sbjct 773 LLNGCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYN 832 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I +V K+ISRRCT +TAIVS+L+YE +M+TTN +P+++DTTG TKP+ LVL Sbjct 833 HNICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVL 892 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFA--HGK 478 +L+WKTL DP I IL PPKG++ AT+++WE EH I+A + C +M F K Sbjct 953 EGKLIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGI---CNHQMAFDTFQNK 1009 Query 479 RNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGI 538 N CWA +L AG+ ++ +++I AF+ED+ +S AL+ + ++G+D SG+ Sbjct 1010 ANVCWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGL 1069 Query 539 LSGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGK 598 S + ++HW N G +G N + E P K + C I T K Sbjct 1070 FSKPLISVYYADNHWDNRPGGKMFGFNPEVALMLEKKYP-FTKGKWNINKQIC--ITTRK 1126 Query 599 LVPMDPGRVQVPINRVVPHVLV---DTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFA 655 + +P +P NR +PH LV T + +L N+++ H + Sbjct 1127 VDEFNPETNIIPANRRLPHSLVAEHHTVRGERMEWLVNKIN------GHHMLLVSGYNLI 1180 Query 656 ELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNL 715 TKRV++ V LG RG Y ++ G T L Sbjct 1181 LPTKRVTW--VAPLG-TRGADYTYNLELGLPAT--------------------------L 1211 Query 716 GIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTER 775 G +DLV + P R HHY QC DHA + + GG +++AYG ADR +ER Sbjct 1212 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSER 1271 Query 776 AVECTARYFKSVSVEKPVSSRITNVEVFFKFS 807 + R F+S KP +N E+FF FS Sbjct 1272 VISVLGRKFRSSRALKP-QCITSNTEMFFLFS 1302 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 534 to 1302 Score:635 bits(1637), Expect:0.0, Method:Compositional matrix adjust., Identities:353/812(43%), Positives:483/812(59%), Gaps:48/812(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ I++ RG +KV D +GEYLVL+P VLR++KL L+ LAE+V H GR Sbjct 534 GAGIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLG-LIHALAEQVKTCTHSGRA 592 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRYA+E + +VL+P+G ++ FQ+L+ESAT+ +N+ F R L +A G A NTDE Sbjct 593 GRYAVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDE 652 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+LV K + EYVY++ K+C K+E+ATG VL GD+ +PPYH+FA+E L+ RPA + Sbjct 653 ESYELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPY 712 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSL Sbjct 713 KTAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSL 772 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L V+ LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YN Sbjct 773 LLNGCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYN 832 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I +V K+ISRRCT +TAIVS+L+YE +M+TTN +P+++DTTG+TKP+ LVL Sbjct 833 HNICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVL 892 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFA--HGK 478 +L+WKTL DP I IL PPKG++ AT+++WE EH I+A + C +M F K Sbjct 953 EGKLIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGI---CNYQMAFDTFQNK 1009 Query 479 RNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGI 538 N CWA +L AG+ ++ +++I AF+ED+ +S AL+ + ++G+D SG+ Sbjct 1010 ANVCWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGL 1069 Query 539 LSGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGK 598 S + ++HW N G +G N + E P K + C I T K Sbjct 1070 FSKPLISVYYADNHWDNRPGGKMFGFNPEVALMLEKKYP-FTKGKWNINKQIC--ITTRK 1126 Query 599 LVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLE---NRLSVDRWDQVHSFKTRAAVKFA 655 + +P +P NR +PH LV + + +E N+++ H + Sbjct 1127 VDEFNPETNIIPANRRLPHSLVAEHHSVRGERMEWLVNKIN------GHHMLLVSGYNLI 1180 Query 656 ELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNL 715 TKRV++ V LG RG Y ++ G T L Sbjct 1181 LPTKRVTW--VAPLG-TRGADYTYNLELGLPAT--------------------------L 1211 Query 716 GIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTER 775 G +DLV + P R HHY QC DHA + + GG +++AYG ADR +ER Sbjct 1212 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSER 1271 Query 776 AVECTARYFKSVSVEKPVSSRITNVEVFFKFS 807 + R F+S KP +N E+FF FS Sbjct 1272 VISVLGRKFRSSRALKP-QCITSNTEMFFLFS 1302 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 536 to 1327 Score:628 bits(1619), Expect:0.0, Method:Compositional matrix adjust., Identities:352/842(42%), Positives:485/842(57%), Gaps:63/842(7%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ R +KV D +G Y+VLSP TVL++ KLA + PLAE+V H GR Sbjct 536 GAGVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPV-HPLAEQVKIITHNGRA 594 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY ++ + +VL+P G ++ FQAL+ESAT+ YN+ F R L +A G + NTDE Sbjct 595 GRYQVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDE 654 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V A + EYV+++ K CVK+E+A+G VL G++ NPP+H+FA+E L+ RP+ + Sbjct 655 ENYEKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPY 714 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 +G++GVPG+GK+AII + VT DLV SGKKENC++I V + RGL I A+TVDS+ Sbjct 715 KTTVVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSI 774 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L R AVD LYVDEA+ACHSGTLLALIA V+P KVVLCGDPKQ G N +Q+++++N Sbjct 775 LLNGCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFN 834 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I V K+ISRRCT +TAIVS L+Y G+M+TTNPC KP++IDTTG TKP +VL Sbjct 835 HNICTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVL 894 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L++ Y +E+MTAAASQGLTR+ VYAVR +V NPLY P SEH+ VLLTRT Sbjct 895 TCFRGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRT 954 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 D LVWKTL DP I +LS P+G+++AT+E+W++EH+ I+ + P F K N Sbjct 955 EDRLVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAF-QNKAN 1013 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA + VL AG+ +T E+++ I AF+ED+ +S + AL+ + +G+D SG+ S Sbjct 1014 VCWAKSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFS 1073 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + EN+HW N G YG N E A +K + G++ I K+ Sbjct 1074 APKVSLYYENNHWDNRPGGRMYGFNAATAARLE-ARHTFLKG-QWHTGKQAV-IAERKIQ 1130 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 P+ +PINR +PH L V +KT + L + Sbjct 1131 PLSVLDNVIPINRRLPHAL-----------------------VAEYKTVKGSRVEWLVNK 1167 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADIN----------- 709 V +G V VSE + PR V + +N Sbjct 1168 V---------------------RGYHVLLVSEYNLALPRRRVTWLSPLNVTGADRCYDLS 1206 Query 710 -GPLNNLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGM 768 G + G FDLVF + R HHY QC DHA + + GG +++AYG Sbjct 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPGGSLLMRAYGY 1266 Query 769 ADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIAH-LGPQLTDI 827 AD+ +E V +R F S V +P +N EVF FS S H + +L+ + Sbjct 1267 ADKISEAVVSSLSRKFSSARVLRP-DCVTSNTEVFLLFSNFDNGKRPSTLHQMNTKLSAV 1325 Query 828 YA 829 YA Sbjct 1326 YA 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 532 to 1297 Score:623 bits(1607), Expect:0.0, Method:Compositional matrix adjust., Identities:345/809(43%), Positives:476/809(58%), Gaps:43/809(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ R +KV T G+ +G Y VLSP VL + KLA + PLAE+V+ HKGR Sbjct 532 GAGSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACI-HPLAEQVLVMTHKGRA 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY +E + +V++P+G ++ FQAL+ESAT+ +N+ F R L +A G A NTDE Sbjct 591 GRYKVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK+V + + EYV+++ +K+CVKK DA L G++ +PP+H+FA+E+L+ RPA H Sbjct 651 EYYKVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPH 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT RDLV S KKENC +I + V RG+ IAARTVDS+ Sbjct 711 KVPTIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSV 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + +VDTLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+N Sbjct 771 LLNGVKHSVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFN 829 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI V K+ISRRCT T+T+IVS L Y+ RM+T NPC ++IDTT +TKP K+ ++L Sbjct 830 HEICTEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIIL 889 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 890 TCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRT 949 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 +VWKTL DP I L+ G+++AT+E+W+ EH+ I+A + E F K N Sbjct 950 EKRIVWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVF-QNKVN 1008 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL A + +T + I PAF++DK +S AL+ +G+D SG+ S Sbjct 1009 VCWAKALEPVLATANITLTRSQWETI-PAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFS 1067 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + N HW NS YGL + + P ++KA+ R D+ T + Sbjct 1068 APTVPLTYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGR---VADVRTDTIK 1124 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 +P VP+NR +PH LV T G +++L + Sbjct 1125 DYNPLINVVPLNRRLPHSLVVTHRYTGNG-----------------------DYSQLVTK 1161 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDL 720 ++ +VL +G GK V E P+ D+ P LG +D+ Sbjct 1162 MTGKTVLVVGTPMN-------IPGKRV----ETLGPSPQCTYKAELDLGIPA-ALGKYDI 1209 Query 721 VFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECT 780 +F + P R+HHY QCEDHA + + V+ KGG I YG ADR TE + Sbjct 1210 IFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCIALGYGTADRATENIISAV 1269 Query 781 ARYFKSVSVEKPVSSRITNVEVFFKFSGR 809 AR F+ V +P + N EV F F G+ Sbjct 1270 ARSFRFSRVCQPKCA-WENTEVAFVFFGK 1297 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 535 to 1327 Score:621 bits(1602), Expect:0.0, Method:Compositional matrix adjust., Identities:360/845(43%), Positives:487/845(57%), Gaps:66/845(7%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ R +KV D +G YLVLSP TVL++ KL L PLAE V HKGR Sbjct 535 GAGVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQAL-HPLAESVKIITHKGRA 593 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY ++ + +VL+PTG ++ FQAL+ESAT+ YN+ F R L +A G+A NTDE Sbjct 594 GRYQVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDE 653 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 Y+ V A EYVY++ KQCVK+E+A G V+ GD+ NPP+H+FA+E L++RPA + Sbjct 654 EGYEKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPY 713 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 +G++GVPG+GK+ II + VT DLVASGKKENC++I V R L + A+TVDS+ Sbjct 714 KTTVVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSV 773 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + VD LYVDEA+ACH+GTLLALIA VRP KVVLCGDPKQ G N +Q+++++N Sbjct 774 LLNGVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFN 833 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H I V K+ISRRCT +TAIVS L+YEGRM+TTNP KPV+IDTTG TKP++E +VL Sbjct 834 HNICTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVL 893 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L++ Y +E+MTAAASQGLTR+ VYAVR +V NPLY +SEH+ VLLTRT Sbjct 894 TCFRGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRT 953 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 LVWKTL DP I LS PKG+++AT+EDW+ EH+ I+ A+ + P ++ K Sbjct 954 EGRLVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAP-LDVFQNKAK 1012 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL AG+ ++ D++ I AF+ED+ +S AL+ + ++G+D SG+ S Sbjct 1013 VCWAKCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFS 1072 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYD---IETG 597 + +HW NS G YG +++A E +P RGR + Sbjct 1073 APRVSLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFY-------RGRWASGQVLVAER 1125 Query 598 KLVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAEL 657 K P+D +P NR +PH LV K +E W V+ + +E Sbjct 1126 KTQPIDVTCNLIPFNRRLPHTLVTEYHPIKGERVE-------W-LVNKIPGYHVLLVSE- 1176 Query 658 TKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLN---- 713 YN +L R VT W + P V AD+ L+ Sbjct 1177 -----YNLIL----PRRKVT----------------WIAPP---TVTGADLTYDLDLGLP 1208 Query 714 -NLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRR 772 N G +DLVF + P R HHY QC DHA + + GG ++ Y ADR Sbjct 1209 PNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPGGSLLLSTYAYADRT 1268 Query 773 TERAVECTARYFKSVSVEKPVSSR--ITNVEVFFKFS----GRCRPHARSIAHLGPQLTD 826 +E V AR F S + V+ R +N EVF F+ GR ++ +L+ Sbjct 1269 SEAVVTALARRFSSF---RAVTVRCVTSNTEVFLLFTNFDNGR---RTVTLHQTNGKLSS 1322 Query 827 IYART 831 IYA T Sbjct 1323 IYAGT 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 532 to 1317 Score:620 bits(1598), Expect:0.0, Method:Compositional matrix adjust., Identities:346/830(42%), Positives:488/830(58%), Gaps:46/830(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ R +KV T G+ +G Y VLSP VL + KLA + PLAE+V+ HKGR Sbjct 532 GAGSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACI-HPLAEQVLVMTHKGRA 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY +E + +V++P+G ++ FQAL+ESAT+ YN+ F R L +A G A NTDE Sbjct 591 GRYKVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK++ + +A+ EYV+++ +K+CVKK +A L GD+ +PP+H+FA+E+L+ RPA H Sbjct 651 EYYKVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPH 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT RDLV S KKENC +I + V RG+ +AARTVDS+ Sbjct 711 KVPTIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSV 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + VDTLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+N Sbjct 771 LLNGVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFN 829 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI V K+ISRRCT T+TAIVS L Y+ RM+T NPC ++IDTT +TKP K+ ++L Sbjct 830 HEICTEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIIL 889 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 890 TCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRT 949 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 +VWKTL DP I L+ G++SAT+E+W+ EH+ I+ + E + K + Sbjct 950 EKRIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPA-NSDVYQNKVH 1008 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL A + +T + I PAF++DK S AL+ + +G+D SG+ S Sbjct 1009 VCWAKALEPVLATANITLTRSQWETI-PAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFS 1067 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + N HW NS YGL + + P ++KA+ R D+ T + Sbjct 1068 APTVPLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR---VADVRTNTIR 1124 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 +P VP+NR +PH LV + +R + D +++L + Sbjct 1125 DYNPMINVVPLNRRLPHSLV----------VSHRYTGDG-------------NYSQLLSK 1161 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADIN-GPLNNLGIFD 719 ++ ++L +G GK V + P AD++ G + +G +D Sbjct 1162 LTGKTILVIGTPIN-------VPGKRVETLG------PGPQCTYKADLDLGIPSMIGKYD 1208 Query 720 LVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEC 779 ++F + P ++HHY QCEDHA + + V+ KGG + YG ADR TE + Sbjct 1209 IIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVALGYGTADRATENIISA 1268 Query 780 TARYFKSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 828 AR F+ V +P + N EV F F G+ H R L L +IY Sbjct 1269 VARSFRFSRVCQPKCA-WENTEVAFVFFGKDNGNHLRDQDQLSVVLNNIY 1317 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 532 to 1317 Score:619 bits(1597), Expect:0.0, Method:Compositional matrix adjust., Identities:349/830(42%), Positives:489/830(58%), Gaps:46/830(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ R +KV T G+ T+G Y VLSP VL + KLA + PLAE+V+ HKGR Sbjct 532 GAGSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACI-HPLAEQVLVMTHKGRA 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY +E + +V++P+G ++ FQAL+ESAT+ YN+ F R L +A G A NTDE Sbjct 591 GRYKVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK++ +++A EYV+++ +++CVKK DA L G++ +PP+H+FA+E+L+ RPA H Sbjct 651 EYYKVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPH 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT RDLV S KKENC +I + V RG+ IAARTVDS+ Sbjct 711 KVPTIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSV 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + VDTLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+N Sbjct 771 LLNGVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFN 829 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 HEI V K+ISRRCT T+TAIVS L Y+ RM+T NPC ++IDTT +TKP ++ ++L Sbjct 830 HEICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIIL 889 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 890 TCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRT 949 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 480 +VWKTL DP I L+ G++SAT+E+W+ EH+ I+ + E + K + Sbjct 950 EKRIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPA-SSDVYQNKVH 1008 Query 481 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 540 CWA VL A + +T + I PAF++DK S AL+ + +G+D SG+ S Sbjct 1009 VCWAKALEPVLATANITLTRSQWETI-PAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFS 1067 Query 541 GKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLV 600 + N HW NS YGL + + P ++KA+ R D+ T + Sbjct 1068 APTVPLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR---LADVRTNTIK 1124 Query 601 PMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKR 660 P VP+NR +PH LV + +R + D +++L + Sbjct 1125 DYSPLINVVPLNRRLPHSLV----------VSHRYTGDG-------------NYSQLLSK 1161 Query 661 VSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADIN-GPLNNLGIFD 719 + +VL +G T V GK V + P AD++ G + +G +D Sbjct 1162 LIGKTVLVIG------TPISV-PGKRVETLG------PGPQCTYKADLDLGIPSTIGKYD 1208 Query 720 LVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEC 779 ++F + P ++HHY QCEDHA + + V+ KGG + YG ADR TE + Sbjct 1209 IIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVALGYGTADRATENIISA 1268 Query 780 TARYFKSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 828 AR F+ V +P + N EV F F G+ H R L L +IY Sbjct 1269 VARSFRFSRVCQPKCA-WENTEVAFVFFGKDNGNHLRDQDQLSIVLNNIY 1317 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 538 to 1336 Score:608 bits(1567), Expect:0.0, Method:Compositional matrix adjust., Identities:350/847(41%), Positives:485/847(57%), Gaps:67/847(7%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ +++ RG +K+I GD +G Y V+SP VLR ++L + LAE+V H GRT Sbjct 538 GAALVETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPI-HELAEQVKIITHGGRT 596 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY++E + KVL+PTG + HF AL+ESATL YN+ F R L +AT+G+AKNT+E Sbjct 597 GRYSVEPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEE 656 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YK+ A EYVY++ +++CVK+E A G VL G++ NPPYH+ A+E LR RPA + Sbjct 657 EQYKVCKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPY 716 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 + T+G+ G PG+GK+AII + VT +DLV SGKKENC++I+ V + RG+ IA RTVDS+ Sbjct 717 HIETLGVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSV 776 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L ++ AVD LYVDEA+ACH+GTL+ALIA V+P KVVLCGDPKQ N +Q+++++N Sbjct 777 LLNGWKKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFN 836 Query 301 HEISDRVLR---KNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEA 357 + D K ISRRCT +TAIVS L+Y+G+M+TTNPCK+ + ID GSTKP K Sbjct 837 NPERDLCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGD 896 Query 358 LVLTCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLL 417 +VLTCFRGWVK +I YP AASQGLTR VYAVR +V NPLY SEH+ VLL Sbjct 897 IVLTCFRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLL 956 Query 418 TRTNDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHG 477 TRT D +VWKTL DP I L+ PKG+++AT+E+W+ EH I+ A+ FA Sbjct 957 TRTEDRIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFA-S 1015 Query 478 KRNTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSG 537 K NTCWA +L AG+ +T E + +FP FR D+P+S + ALD + ++G+D SSG Sbjct 1016 KVNTCWAKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSG 1075 Query 538 ILSGKGSFMRLE-------NSHWSNSNRGYEYGLN---LDALEGYEIANPRMIKALKQRR 587 I S + +HW NS G ++G N + + Y + L+ + Sbjct 1076 IFSRPEIPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVIPTCKKYPV-------YLRAGK 1128 Query 588 GRECYDIETGKLVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFK 647 G + I VP + VP+NR +PH L S + Sbjct 1129 GDQILPIYGRVSVPSARNNL-VPLNRNLPHSL-----------------------TASLQ 1164 Query 648 TRAAVKFAELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITAD 707 + A + ++ +S+L + T YCV K +T V+ P G V AD Sbjct 1165 KKEAAPLHKFLNQLPGHSMLLVSKE----TCYCV--SKRITWVA------PLG--VRGAD 1210 Query 708 INGPLN----NLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIV 763 N L+ L +DLV + P R+HHY QCE+HA + + + GG + Sbjct 1211 HNHDLHFGFPPLSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSALNCLKPGGTLAL 1270 Query 764 KAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFFKFSGRCRPHARSIA--HLG 821 KAYG AD +E V AR F S +P ++ N E+FF F R HL Sbjct 1271 KAYGFADSNSEDVVLSLARKFVRASAVRPSCTQF-NTEMFFVFRQLDNDRERQFTQHHLN 1329 Query 822 PQLTDIY 828 +++I+ Sbjct 1330 LAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 532 to 1317 Score:607 bits(1565), Expect:0.0, Method:Compositional matrix adjust., Identities:347/831(42%), Positives:481/831(57%), Gaps:48/831(5%) Query 1 GSTIIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRT 60 G+ ++ RG ++V + G+ +G Y +LSP VL + KLA + PLAE+V+ HKGR Sbjct 532 GAGSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACI-HPLAEQVLVMTHKGRA 590 Query 61 GRYAIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDE 120 GRY +E + KV++P G ++ FQAL+ESAT+ +N+ F R L +A G A NTDE Sbjct 591 GRYKVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDE 650 Query 121 VYYKLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTH 180 YYK V EYV+++ +++CVK+EDA L GD+ +PP+H+FA+E+L+ RPA H Sbjct 651 EYYKTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPH 710 Query 181 DVHTIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSL 240 V TIG+YGVPG+GK+ II + VT +DLV S KKENC +I R V R + +AARTVDS+ Sbjct 711 KVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSV 770 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + V+TLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+N Sbjct 771 LLNGVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFN 829 Query 301 HEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 360 H+I V K+ISRRCT T+TAIVS L Y+ RMKT NPC ++IDTTG+TKP K+ L+L Sbjct 830 HDICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLIL 889 Query 361 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 420 TCFRGWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 890 TCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRT 949 Query 421 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRM-NFAHGKR 479 +VWKTL DP I L+ GD++A+++DW+ EH+ I+A + + P+ + K Sbjct 950 EKRIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDK--PQTADVFQNKV 1007 Query 480 NTCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGIL 539 N CWA VL A +++T + + + P F+ D+ +S AL+ +G+D SG+ Sbjct 1008 NVCWAKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLF 1066 Query 540 SGKGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKL 599 S + + HW NS YGLN + + P + KA+ R DI + Sbjct 1067 SAPTVALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGR---VADIRNNTI 1123 Query 600 VPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTK 659 P VP+NR +PH L+ VD K + + Sbjct 1124 KDYSPTINVVPLNRRLPHSLI----------------VDH-------KGQGTTDHSGFLS 1160 Query 660 RVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFD 719 ++ SVL +G D GK V E P + D+ P +++G +D Sbjct 1161 KMKGKSVLVIG-------DPISIPGKKV----ESMGPLPTNTIRCDLDLGIP-SHVGKYD 1208 Query 720 LVFCDAAGPRRYHHYAQCEDHA-RRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVE 778 ++F + P R HHY QCEDHA S CK V GG + YG+ADR TE + Sbjct 1209 IIFVNVRTPYRNHHYQQCEDHAIHHSMLTCK-AVHHLNTGGTCVAIGYGLADRATENIIT 1267 Query 779 CTARYFKSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 828 AR F+ V +P ++ N EV F F G+ H LG L +IY Sbjct 1268 AVARSFRFTRVCQPKNT-AENTEVLFVFFGKDNGNHTHDQDRLGVVLDNIY 1317 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 842 to 1132 Score:89.0 bits(219), Expect:1e-16, Method:Compositional matrix adjust., Identities:85/294(29%), Positives:130/294(44%), Gaps:17/294(5%) Query 168 AFEALRKRPAHTHDVHTIGIYGVPGAGKTAIITTEVTTR-DLVASGKKENCEDIKR--CV 224 + E L K VH + GVPG GKTA I V + DLV + +E I+R C Sbjct 842 SLEVLNKEAIVDPGVHITLVDGVPGCGKTAEIIARVNWKTDLVLTPGREAAAMIRRRACA 901 Query 225 LERRGLKIA--ARTVDSLLYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCG 282 L + + RT DS + D +YVDE H+G LL + K + G Sbjct 902 LHKSPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTG-LLNFALKISGCKKAFVFG 960 Query 283 DPKQVGCVNQLQMRMHYNHE----ISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNP 338 D KQ+ +N++ M Y E I D V R+ ++ RC +T+ ++ + Y+ + TT+P Sbjct 961 DAKQIPFINRV-MNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTI-YKAAVATTSP 1018 Query 339 C---KKPVLIDTTGSTKPDKEAL--VLTCFRGWVKDLKILYPHNELMTAAASQGLTREKV 393 K + + G +P+ + + F K I +N++ T QG T E+ Sbjct 1019 VVHSVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIKSGYNDVNTVHEIQGETFEET 1078 Query 394 YAVRCRVTSNPLYEPTSEHITVLLTRTNDELVWKTLPNDPLIPILSKPPKGDYS 447 VR T L S H+ V LTR +V+ T+ D + I++ K D S Sbjct 1079 AVVRATPTPIGLIARDSPHVLVALTRHTKAMVYYTVVFDAVTSIIADVEKVDQS 1132 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 826 to 1116 Score:70.5 bits(171), Expect:5e-11, Method:Compositional matrix adjust., Identities:82/299(27%), Positives:127/299(42%), Gaps:30/299(10%) Query 189 GVPGAGKT-AIITTEVTTRDLVASGKKENCEDIKRCVLER-------RGLKIAARTVDSL 240 GVPG GKT I+ T DL+ KE C + +++R R K RTVDS Sbjct 826 GVPGCGKTKEILETVNFDEDLILVPGKEAC----KMIIKRANKSGHVRATKDNVRTVDSF 881 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQ---MRM 297 L + L++DE H+G + LIA +V GD +Q+ +N++ Sbjct 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVF-GDTEQIPFINRVANFPYPK 940 Query 298 HYNHEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPV---LIDTTGSTKPD 354 H+ + D + +S RC +T + N Y+G++ TN + V ++ G P Sbjct 941 HFATLVYDHREVRRLSLRCPADVTHFM-NSKYDGKVLCTNDVIRSVDAEVVRGKGVFNPK 999 Query 355 KEAL---VLTCFRGWVKDLK-----ILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLY 406 + L ++T + +LK + E+ T QG T E V VR T L Sbjct 1000 SKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLELI 1059 Query 407 EPTSEHITVLLTRTNDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALR 465 +S H+ V LTR + ++ DPL+ + S K S + D GIL L+ Sbjct 1060 SKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSK--VSDFILDMYKVDAGILXQLQ 1116 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 826 to 1116 Score:66.6 bits(161), Expect:8e-10, Method:Compositional matrix adjust., Identities:81/300(27%), Positives:129/300(43%), Gaps:32/300(10%) Query 189 GVPGAGKT-AIITTEVTTRDLVASGKKENCEDIKRCVLER-------RGLKIAARTVDSL 240 GVPG GKT I+ T DL+ KE C + +++R R + RTVDS Sbjct 826 GVPGCGKTKEILETVNFDEDLILVPGKEAC----KMIIKRANKSGHVRATRDNVRTVDSF 881 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYN 300 L + L++DE H+G + L+A +V GD +Q+ +N++ + Sbjct 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVF-GDAEQIPFINRVANFPYPK 940 Query 301 HE----ISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPV---LIDTTGSTKP 353 H + R +R+ +S RC +T + N Y+G++ TN + V ++ G P Sbjct 941 HFRYTCLYHREVRR-LSLRCPADVTHFM-NSKYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998 Query 354 DKEAL---VLTCFRGWVKDLK-----ILYPHNELMTAAASQGLTREKVYAVRCRVTSNPL 405 + L ++T + +LK + E+ T QG T E V VR T L Sbjct 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058 Query 406 YEPTSEHITVLLTRTNDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALR 465 +S H+ V LTR + ++ DPL+ + S K S + D GIL L+ Sbjct 1059 ISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSK--VSDFILDMYKVDAGILXQLQ 1116 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 823 to 1091 Score:62.4 bits(150), Expect:2e-08, Method:Compositional matrix adjust., Identities:74/272(27%), Positives:117/272(43%), Gaps:16/272(5%) Query 185 IGIYGVPGAGKTAIITTEVT-TRDLVASGKKENCEDIKRCVLER---RGLKIAARTVDSL 240 I + GVPG GKT I +V + DL+ KE + I R + R K RTVDS Sbjct 823 ILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRADKDNVRTVDSF 882 Query 241 LYGAYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGC---VNQLQMRM 297 L R L++DE H+G + L+ + V GD KQ+ V Sbjct 883 LMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVY-GDTKQIPFICRVANFPYPA 941 Query 298 HYNHEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPV---LIDTTGSTKPD 354 H+ ++D + ++ RC +T + N Y+G + T+ ++ V ++ G+ P Sbjct 942 HFAKLVADEKEVRRVTLRCPADVTYFL-NKKYDGAVMCTSAVERSVKAEVVRGKGALNPI 1000 Query 355 K---EALVLTCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSE 411 E +LT F K + + ++ T QG T EK VR T + S Sbjct 1001 TLPLEGKILT-FTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTSTPLEIISSASP 1059 Query 412 HITVLLTRTNDELVWKTLPNDPLIPILSKPPK 443 H+ V LTR + T+ DP++ ++S+ K Sbjct 1060 HVLVALTRHTTCCKYYTVVLDPMVNVISEMEK 1091 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 812 to 1090 Score:57.0 bits(136), Expect:8e-07, Method:Compositional matrix adjust., Identities:73/286(26%), Positives:114/286(39%), Gaps:24/286(8%) Query 170 EALRKRPAHTHDVHTIGIYGVPGAGK-TAIITTEVTTRDLVASGKKENCEDIKRCVLER- 227 + +R H + + GVPG GK DL+ K+ I+R Sbjct 812 KTMRDGEPHEPTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSG 871 Query 228 --RGLKIAARTVDSLLYGAYRGAVDTLYVDEAYACHSG--TLLALIAAVRPTGKVVLCGD 283 R RTVDSLL + L++DE H+G L LI+ + GD Sbjct 872 LIRATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGC---DIAYIYGD 928 Query 284 PKQVGCVNQLQ---MRMHYNHEISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCK 340 +Q+ +N++Q H+ D V + + RC + + + YEG + TT+ + Sbjct 929 TQQIPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS-KYEGAVTTTSTVQ 987 Query 341 KPVLIDTTGS-------TKPDKEALV-LTCFRGWVKDLKILYPHNELMTAAASQGLTREK 392 + V + G +KP K +V T + + K + + T QG T E Sbjct 988 RSVSSEMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEK---GYKNVNTVHEIQGETFED 1044 Query 393 VYAVRCRVTSNPLYEPTSEHITVLLTRTNDELVWKTLPNDPLIPIL 438 V VR T L +S H+ V LTR + T+ DPL+ I+ Sbjct 1045 VSLVRLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 823 to 1084 Score:55.5 bits(132), Expect:2e-06, Method:Compositional matrix adjust., Identities:70/265(26%), Positives:111/265(41%), Gaps:16/265(6%) Query 189 GVPGAGKTAIITTEVT-TRDLVASGKKENCEDIKRCVLE---RRGLKIAARTVDSLLYGA 244 GVPG GKT I +V + DLV KE + I R + R K RTVDS L Sbjct 823 GVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNVRTVDSFLMHP 882 Query 245 YRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGC---VNQLQMRMHYNH 301 + L++DE H+G + L+ V D +Q+ V H+ Sbjct 883 PKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYV-DTQQIPFICRVANFPYPAHFAK 941 Query 302 EISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPV---LIDTTGSTKPDK--- 355 + D + ++ RC +T + N Y+G + T+ ++ V ++ G+ P Sbjct 942 LVVDEKEDRRVTLRCPADVTYFL-NQKYDGSVLCTSSVERSVSAEVVRGKGALNPITLPL 1000 Query 356 EALVLTCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITV 415 E +LT F K + + ++ T QG T EK VR T + S H+ V Sbjct 1001 EGKILT-FTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASPHVLV 1059 Query 416 LLTRTNDELVWKTLPNDPLIPILSK 440 LTR + T+ DP++ ++S+ Sbjct 1060 ALTRHTTRCKYYTVVLDPMVNVISE 1084