******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= ememe/meme.fasta ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 0 1.0000 25 1 1.0000 25 2 1.0000 25 3 1.0000 25 4 1.0000 25 5 1.0000 25 6 1.0000 25 7 1.0000 25 8 1.0000 25 9 1.0000 25 10 1.0000 25 11 1.0000 25 12 1.0000 25 13 1.0000 25 14 1.0000 25 15 1.0000 25 16 1.0000 25 17 1.0000 25 18 1.0000 25 19 1.0000 25 20 1.0000 25 21 1.0000 25 22 1.0000 25 23 1.0000 25 24 1.0000 25 25 1.0000 25 26 1.0000 25 27 1.0000 25 28 1.0000 25 29 1.0000 25 30 1.0000 25 31 1.0000 25 32 1.0000 25 33 1.0000 25 34 1.0000 25 35 1.0000 25 36 1.0000 25 37 1.0000 25 38 1.0000 25 39 1.0000 25 40 1.0000 25 41 1.0000 25 42 1.0000 25 43 1.0000 25 44 1.0000 25 45 1.0000 25 46 1.0000 25 47 1.0000 25 48 1.0000 25 49 1.0000 25 50 1.0000 25 51 1.0000 25 52 1.0000 25 53 1.0000 25 54 1.0000 25 55 1.0000 25 56 1.0000 25 57 1.0000 25 58 1.0000 25 59 1.0000 25 60 1.0000 25 61 1.0000 25 62 1.0000 25 63 1.0000 25 64 1.0000 25 65 1.0000 25 66 1.0000 25 67 1.0000 25 68 1.0000 25 69 1.0000 25 70 1.0000 25 71 1.0000 25 72 1.0000 25 73 1.0000 25 74 1.0000 25 75 1.0000 25 76 1.0000 25 77 1.0000 25 78 1.0000 25 79 1.0000 25 80 1.0000 25 81 1.0000 25 82 1.0000 25 83 1.0000 25 84 1.0000 25 85 1.0000 25 86 1.0000 25 87 1.0000 25 88 1.0000 25 89 1.0000 25 90 1.0000 25 91 1.0000 25 92 1.0000 25 93 1.0000 25 94 1.0000 25 95 1.0000 25 96 1.0000 25 97 1.0000 25 98 1.0000 25 99 1.0000 25 100 1.0000 25 101 1.0000 25 102 1.0000 25 103 1.0000 25 104 1.0000 25 105 1.0000 25 106 1.0000 25 107 1.0000 25 108 1.0000 25 109 1.0000 25 110 1.0000 25 111 1.0000 25 112 1.0000 25 113 1.0000 25 114 1.0000 25 115 1.0000 25 116 1.0000 25 117 1.0000 25 118 1.0000 25 119 1.0000 25 120 1.0000 25 121 1.0000 25 122 1.0000 25 123 1.0000 25 124 1.0000 25 125 1.0000 25 126 1.0000 25 127 1.0000 25 128 1.0000 25 129 1.0000 25 130 1.0000 25 131 1.0000 25 132 1.0000 25 133 1.0000 25 134 1.0000 25 135 1.0000 25 136 1.0000 25 137 1.0000 25 138 1.0000 25 139 1.0000 25 140 1.0000 25 141 1.0000 25 142 1.0000 25 143 1.0000 25 144 1.0000 25 145 1.0000 25 146 1.0000 25 147 1.0000 25 148 1.0000 25 149 1.0000 25 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme ememe/meme.fasta -mod zoops -prior dirichlet -nostatus -dna -oc ememe/ model: mod= zoops nmotifs= 1 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 150 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 3750 N= 150 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.374 C 0.101 G 0.292 T 0.233 Background letter frequencies (from dataset with add-one prior applied): A 0.373 C 0.101 G 0.292 T 0.233 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 21 sites = 134 llr = 659 E-value = 7.8e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 34445446672:811344444 pos.-specific C 222111:::1:::::111112 probability G 22221232228a198331112 matrix T 33343332211::11433332 bits 3.3 3.0 2.6 2.3 Relative 2.0 Entropy 1.7 * (7.1 bits) 1.3 * * 1.0 * ** 0.7 ***** 0.3 ******* * 0.0 --------------------- Multilevel AAAAAAAAAAGGAGGTAAAAA consensus TTTTTTGTT AGTTTG sequence GT GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 22 3 2.40e-07 AT AACTATTAAAGGAGGTATTTT CC 109 3 6.91e-07 GT TCTTAATATAGGAGGTGTAAC GG 132 3 1.31e-06 TC CGATATAAAAGGAGGTAATTT TG 107 3 5.35e-06 TA TTTAATTAAAGGAGGAACTAT AA 135 3 1.40e-05 CG ACGTTTTAAAGGAGGGTTATG GA 126 1 1.75e-05 . AAAAGATAAAGGAGGTAACCA TTGT 9 2 1.75e-05 T ATATATTAAAGGAGGAATTAG AAC 112 4 2.17e-05 TAC ACATTGAGAAGGAGGGACAAC G 100 3 2.17e-05 TT ACAATTAATAGGAGGATTCAA TC 88 3 2.17e-05 TC TATGAAGAAAGGAGGATTTTC TT 83 2 2.17e-05 T CAGAATAATAGGAGGAAAATC CTT 1 3 2.17e-05 AC TTCCAAATTAGGAGGGAACTA AA 124 3 3.27e-05 AT TTTTAATTGAGGAGGTGCTAG GT 118 2 3.27e-05 T TCTACAGAGAGGAGGTTAGCC TCA 114 3 3.27e-05 AC GCTAATGAGAGGAGGTACTAG GC 50 1 3.27e-05 . ACAATTTTATGGAGGTAATCA AACA 98 4 3.98e-05 TAA CCACAATAGAGGAGGAAATAA A 142 3 4.81e-05 GG ATAATTAAAGGGAGGTAAATG AA 120 1 4.81e-05 . ACCTTGTCAAGGAGGTGCGTA AAGC 61 2 4.81e-05 G TTATTTCGAAGGAGGTAATAG CTT 10 2 4.81e-05 T ATCTTGATAAGGAGGATATTG AGT 59 2 5.79e-05 A ATATTGATAAGGAGGGTATTT AAT 97 3 6.92e-05 CA CGGACTTTAAGGAGGTGTGTC TC 40 4 6.92e-05 TTT TTTTATGTTCGGAGGAACTAA G 17 2 8.24e-05 G TCATTTTAAAGGAGTGGATAA ATA 103 3 9.76e-05 CA CATTAAAAAGGGAGGATTGCC CC 99 4 9.76e-05 GAG GAATTTAATAGGAGGTGGAAC A 86 2 9.76e-05 T TATTCCTAAGGGAGGCAACAA GTA 123 2 1.15e-04 C GATTCGGGAAGGAGGTAATTA GTA 121 3 1.35e-04 TT GTCTGTGAAAGGAGGGCTACA CT 20 4 1.35e-04 ACA TTCCTTTAAAAGAGGTGGTTA C 137 4 1.84e-04 CTG AGGTATTAGAGGAGGCTTATA G 113 4 1.84e-04 CGA AACCCGGGAAGGAGGCTTATC C 89 1 2.14e-04 . GAGGAAAAAAGGAGGGTCTTA GAAA 58 4 2.14e-04 AGG TGAAAAAAGAGGAGGAAAATA A 8 2 2.14e-04 A TACTTATGATGGAGGTACAAG AAA 105 3 2.47e-04 AT CTAGAAGAAAGGAGGATGTAA CG 41 5 2.47e-04 GAAT TAATGGATCAGGAGGTTCAAC 122 4 2.85e-04 AAA GCTAATACAAGGAGGGAAAAT T 68 5 3.27e-04 TTCC CCATCTGGGAGGAGGTAGGCA 128 4 3.75e-04 ATT AGTGTAAAGAGGAGGTGCTCG C 146 1 4.28e-04 . AGCAAGAAACGGAGGGTATAG AAGG 127 3 4.28e-04 CT GTTAGGATAAGGAGGGAAACA CT 104 3 4.28e-04 AA TGTAATGAAGGGAGGACAAAA AC 80 3 4.28e-04 CT TTATAAGATATGAGGTGCAAA TT 45 2 4.28e-04 A GCTTATTAGAGGGGGAACTTT TTC 37 3 4.28e-04 GG AAGAGATTTAGGAGGCACAAC GA 73 4 4.88e-04 ACT TGGAATTAGAGGAGGAAGTCA G 94 5 6.28e-04 AAAT CCCTTTATAAGGGGTGGAATA 49 4 6.28e-04 ATT TAGAGATAATGGAGGTTTCCT A 36 3 6.28e-04 AT TCCAAGAACAGGAGTGATCAC AG 26 4 6.28e-04 ACT AGCTTTTAACGGAGGTGGAGA A 71 1 7.10e-04 . TAAAATAAAAGGAGAGATATT CCCA 141 1 8.01e-04 . ATTGATATATGGAGGGAAAAA TATC 119 1 8.01e-04 . GATTCCGAAGGGAGGTCACAG CGTT 90 5 8.01e-04 GTGT GCGTTGGAAAAGAGGTAAGTA 54 2 8.01e-04 A TACAGTTATAAGAGGGGACAA ACG 32 4 8.01e-04 GCA CTTCAAATACAGAGGTGAAAA A 23 4 9.02e-04 TTG TGGTTGTGTAGGAGGAAACAT C 0 1 9.02e-04 . AATTAGGAAAGGAGTGAGCAC TACT 148 2 1.01e-03 A CAAAGAAAAAGGAGGTTTGGG GAT 136 3 1.13e-03 GT TTCGAAAAAGGGAGGGATAGT CC 115 3 1.13e-03 AA CTGAAAAGAAGGAGGGATAGT CA 19 4 1.13e-03 TTT TATTTAATGAAGGGGTGCTTC T 4 2 1.13e-03 A TAATTTAAAAGGAAGTGACGA TTT 111 1 1.27e-03 . AAAAAGCAGGGGAGGTGCTCG CATA 79 4 1.27e-03 ACA AATAAAGAGGGGAGGAAAATG C 85 5 1.42e-03 CAAT ACTGGAGTTAGGAGGTGAGCG 77 4 1.42e-03 AGA CAGAGAAAAAGGATGTAAAAA G 55 2 1.42e-03 A TTTTAGAAAGTGAGGCTACTT AGA 48 2 1.42e-03 C AAAGAGAAAAGGTGGTGAAAC ATC 6 1 1.42e-03 . TTAGTGATTGGGAGGTAATGA AAGA 110 4 1.58e-03 CAC ACAAACGAAGGGAGGATATGT C 34 4 1.58e-03 CAA GACAGGATAAAGAGGGATCAC T 30 3 1.58e-03 GT GATTATGAAAGGGGGCTGGAC AC 63 4 1.76e-03 AGT TTGAAAGATAGGAGTGGATAA C 47 3 1.76e-03 AC ATTCGGGTTTGGAGGTGTCAC AA 35 2 1.76e-03 A CGAAACAGGCGGAGGAAATTA TTT 13 5 1.76e-03 TAAT CTTATCATTAGGGGGAGTATT 131 4 1.95e-03 TGA TTTGAAGAAGGGAGATCACAC G 72 2 1.95e-03 G AGAGAAGAAAGGAAGTTACAC TTC 57 3 1.95e-03 GG TTAGCGGAAAAGAGGAATAAA CG 44 5 1.95e-03 ATTA TCCTATGTGAGGTGGAGTGTA 3 4 2.16e-03 ATA TCGTGATTAAAGAGGACTAAA C 106 4 2.39e-03 TTT CAATTAGGAAGGAGAAGAATA C 16 4 2.39e-03 TGC AAAATCATAGTGAGGTGATTA A 38 4 2.64e-03 TTA AAAAAGAAAAGGATGAACAAG T 147 2 2.91e-03 A TAAATAGAAGAGAGGGAGATA TGT 93 5 3.20e-03 AAGC GGAATTTGCAGGAGGCGATCT 84 3 3.20e-03 AC AATAAAGAGAAGGGGTAATAA AT 52 4 3.20e-03 CAT CGTCTGTAAAGGAAGAATAAA A 18 4 3.20e-03 ACT TTAAATAAAGAGATGTGATAC T 116 2 3.51e-03 T AAGTAAAGGAGGGGGCTACTT ACT 67 4 3.51e-03 AAG GGAATATTTAGGAGGATGAAT C 11 5 3.51e-03 GCCA AGTCATGAAGGGAGAAAAACC 149 1 3.85e-03 . AAAAAATGAGAGAGGTGTATG CCAT 62 2 3.85e-03 T CTTTTAAGGAGGAGCATTTTT TTT 81 3 4.22e-03 TA ATTCATGTAAGGGGGAATGGA TT 75 3 4.22e-03 TC TATGGGAAAAGGAGTCTTTAG GA 108 4 4.61e-03 TAT GGGCGACAAAGGAGGGAAAAT A 64 3 4.61e-03 GT GGATAAAGAGGGAGGTTAAGG CA 42 4 4.61e-03 GAG ACATATCGTGTGAGGTGTACA G 15 1 4.61e-03 . AAAACAGAGAGGATGATATTA CACC 102 4 5.98e-03 ATG TAAGATTTAAGGGGTGAAGCA G 33 2 5.98e-03 C CACAGAATGATGAGGTGAGTG GGC 29 5 5.98e-03 AATG AAAAAGAAAAGGGTGGTAACA 25 1 5.98e-03 . GATATGGAGAAGAGGTTGATG CGAG 51 2 6.50e-03 T TAATAAACTTGGAGGGTGATT TTA 7 2 6.50e-03 T GTCTATCTTAGGGGGAAATGT TAT 21 1 7.05e-03 . TAGATTAATAAGGGGAATGTA AACT 76 4 7.64e-03 TAG AAATTTATAGGGAGAGGGAAA A 39 3 7.64e-03 AT TGGGAGTGAGGGGGGCTTTTA TG 91 4 8.27e-03 TAC GCGGAAGAAAGGAGAGATAGC C 53 4 8.27e-03 CAG ATCGTTTAACTGGGGTGGTAA A 129 2 8.94e-03 G GCGGTCAATCTGAGGTGATTT AAT 95 2 1.04e-02 C GTGTGGGTTCGGGGGGTACAA TAA 82 1 1.04e-02 . ATGATTCGAAAGAGGGTGATG ATCA 125 4 1.12e-02 GTT AGGCGAGAAAGGAGTGACCGA G 56 5 1.12e-02 TTCG TAGAAGTAAAGGAAATACATT 140 2 1.29e-02 T AGGGAAAGAAAGAGGTTGAAG TAA 92 5 1.29e-02 AACG TCATCCTCTCGGAGATCAGTA 78 4 1.29e-02 TTT ATAGAGAATTGGAGTGATAAA A 66 3 1.29e-02 TT TTAGTGAAGCGGTGGGTAAAT CG 31 3 1.39e-02 GG GGATCAATTAGGATGGATGAA TG 145 1 1.49e-02 . AAGATGGTATGGATGTGAGCA TCAA 43 3 1.49e-02 TC CTTATAATAAAGAAGACTGCC GA 65 3 1.94e-02 AA AAACTTGCTAAGGGGTATGAG GC 133 2 2.19e-02 A ATAAACAGGAGGTGCTACTAA GCT 117 3 2.33e-02 CG TGAAGAAATTGGTGGTGAAAG CA 14 2 2.33e-02 C TAAATTTTGGAGGGCTAAAAC AAA 5 3 2.48e-02 TT TCAACAGAAATGAGTGTGAGA AA 69 4 2.63e-02 ATT CACGAAGAAAGGAAACCCAAG T 87 2 3.85e-02 T CAAAGTTGAGAGAAGCAAATG CTA 130 5 4.68e-02 AGCC AACAAAAGCGAGGGGAAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22 2.4e-07 2_[1]_2 109 6.9e-07 2_[1]_2 132 1.3e-06 2_[1]_2 107 5.3e-06 2_[1]_2 135 1.4e-05 2_[1]_2 126 1.8e-05 [1]_4 9 1.8e-05 1_[1]_3 112 2.2e-05 3_[1]_1 100 2.2e-05 2_[1]_2 88 2.2e-05 2_[1]_2 83 2.2e-05 1_[1]_3 1 2.2e-05 2_[1]_2 124 3.3e-05 2_[1]_2 118 3.3e-05 1_[1]_3 114 3.3e-05 2_[1]_2 50 3.3e-05 [1]_4 98 4e-05 3_[1]_1 142 4.8e-05 2_[1]_2 120 4.8e-05 [1]_4 61 4.8e-05 1_[1]_3 10 4.8e-05 1_[1]_3 59 5.8e-05 1_[1]_3 97 6.9e-05 2_[1]_2 40 6.9e-05 3_[1]_1 17 8.2e-05 1_[1]_3 103 9.8e-05 2_[1]_2 99 9.8e-05 3_[1]_1 86 9.8e-05 1_[1]_3 123 0.00012 1_[1]_3 121 0.00014 2_[1]_2 20 0.00014 3_[1]_1 137 0.00018 3_[1]_1 113 0.00018 3_[1]_1 89 0.00021 [1]_4 58 0.00021 3_[1]_1 8 0.00021 1_[1]_3 105 0.00025 2_[1]_2 41 0.00025 4_[1] 122 0.00028 3_[1]_1 68 0.00033 4_[1] 128 0.00037 3_[1]_1 146 0.00043 [1]_4 127 0.00043 2_[1]_2 104 0.00043 2_[1]_2 80 0.00043 2_[1]_2 45 0.00043 1_[1]_3 37 0.00043 2_[1]_2 73 0.00049 3_[1]_1 94 0.00063 4_[1] 49 0.00063 3_[1]_1 36 0.00063 2_[1]_2 26 0.00063 3_[1]_1 71 0.00071 [1]_4 141 0.0008 [1]_4 119 0.0008 [1]_4 90 0.0008 4_[1] 54 0.0008 1_[1]_3 32 0.0008 3_[1]_1 23 0.0009 3_[1]_1 0 0.0009 [1]_4 148 0.001 1_[1]_3 136 0.0011 2_[1]_2 115 0.0011 2_[1]_2 19 0.0011 3_[1]_1 4 0.0011 1_[1]_3 111 0.0013 [1]_4 79 0.0013 3_[1]_1 85 0.0014 4_[1] 77 0.0014 3_[1]_1 55 0.0014 1_[1]_3 48 0.0014 1_[1]_3 6 0.0014 [1]_4 110 0.0016 3_[1]_1 34 0.0016 3_[1]_1 30 0.0016 2_[1]_2 63 0.0018 3_[1]_1 47 0.0018 2_[1]_2 35 0.0018 1_[1]_3 13 0.0018 4_[1] 131 0.0019 3_[1]_1 72 0.0019 1_[1]_3 57 0.0019 2_[1]_2 44 0.0019 4_[1] 3 0.0022 3_[1]_1 106 0.0024 3_[1]_1 16 0.0024 3_[1]_1 38 0.0026 3_[1]_1 147 0.0029 1_[1]_3 93 0.0032 4_[1] 84 0.0032 2_[1]_2 52 0.0032 3_[1]_1 18 0.0032 3_[1]_1 116 0.0035 1_[1]_3 67 0.0035 3_[1]_1 11 0.0035 4_[1] 149 0.0039 [1]_4 62 0.0039 1_[1]_3 81 0.0042 2_[1]_2 75 0.0042 2_[1]_2 108 0.0046 3_[1]_1 64 0.0046 2_[1]_2 42 0.0046 3_[1]_1 15 0.0046 [1]_4 102 0.006 3_[1]_1 33 0.006 1_[1]_3 29 0.006 4_[1] 25 0.006 [1]_4 51 0.0065 1_[1]_3 7 0.0065 1_[1]_3 21 0.007 [1]_4 76 0.0076 3_[1]_1 39 0.0076 2_[1]_2 91 0.0083 3_[1]_1 53 0.0083 3_[1]_1 129 0.0089 1_[1]_3 95 0.01 1_[1]_3 82 0.01 [1]_4 125 0.011 3_[1]_1 56 0.011 4_[1] 140 0.013 1_[1]_3 92 0.013 4_[1] 78 0.013 3_[1]_1 66 0.013 2_[1]_2 31 0.014 2_[1]_2 145 0.015 [1]_4 43 0.015 2_[1]_2 65 0.019 2_[1]_2 133 0.022 1_[1]_3 117 0.023 2_[1]_2 14 0.023 1_[1]_3 5 0.025 2_[1]_2 69 0.026 3_[1]_1 87 0.038 1_[1]_3 130 0.047 4_[1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=134 22 ( 3) AACTATTAAAGGAGGTATTTT 1 109 ( 3) TCTTAATATAGGAGGTGTAAC 1 132 ( 3) CGATATAAAAGGAGGTAATTT 1 107 ( 3) TTTAATTAAAGGAGGAACTAT 1 135 ( 3) ACGTTTTAAAGGAGGGTTATG 1 126 ( 1) AAAAGATAAAGGAGGTAACCA 1 9 ( 2) ATATATTAAAGGAGGAATTAG 1 112 ( 4) ACATTGAGAAGGAGGGACAAC 1 100 ( 3) ACAATTAATAGGAGGATTCAA 1 88 ( 3) TATGAAGAAAGGAGGATTTTC 1 83 ( 2) CAGAATAATAGGAGGAAAATC 1 1 ( 3) TTCCAAATTAGGAGGGAACTA 1 124 ( 3) TTTTAATTGAGGAGGTGCTAG 1 118 ( 2) TCTACAGAGAGGAGGTTAGCC 1 114 ( 3) GCTAATGAGAGGAGGTACTAG 1 50 ( 1) ACAATTTTATGGAGGTAATCA 1 98 ( 4) CCACAATAGAGGAGGAAATAA 1 142 ( 3) ATAATTAAAGGGAGGTAAATG 1 120 ( 1) ACCTTGTCAAGGAGGTGCGTA 1 61 ( 2) TTATTTCGAAGGAGGTAATAG 1 10 ( 2) ATCTTGATAAGGAGGATATTG 1 59 ( 2) ATATTGATAAGGAGGGTATTT 1 97 ( 3) CGGACTTTAAGGAGGTGTGTC 1 40 ( 4) TTTTATGTTCGGAGGAACTAA 1 17 ( 2) TCATTTTAAAGGAGTGGATAA 1 103 ( 3) CATTAAAAAGGGAGGATTGCC 1 99 ( 4) GAATTTAATAGGAGGTGGAAC 1 86 ( 2) TATTCCTAAGGGAGGCAACAA 1 123 ( 2) GATTCGGGAAGGAGGTAATTA 1 121 ( 3) GTCTGTGAAAGGAGGGCTACA 1 20 ( 4) TTCCTTTAAAAGAGGTGGTTA 1 137 ( 4) AGGTATTAGAGGAGGCTTATA 1 113 ( 4) AACCCGGGAAGGAGGCTTATC 1 89 ( 1) GAGGAAAAAAGGAGGGTCTTA 1 58 ( 4) TGAAAAAAGAGGAGGAAAATA 1 8 ( 2) TACTTATGATGGAGGTACAAG 1 105 ( 3) CTAGAAGAAAGGAGGATGTAA 1 41 ( 5) TAATGGATCAGGAGGTTCAAC 1 122 ( 4) GCTAATACAAGGAGGGAAAAT 1 68 ( 5) CCATCTGGGAGGAGGTAGGCA 1 128 ( 4) AGTGTAAAGAGGAGGTGCTCG 1 146 ( 1) AGCAAGAAACGGAGGGTATAG 1 127 ( 3) GTTAGGATAAGGAGGGAAACA 1 104 ( 3) TGTAATGAAGGGAGGACAAAA 1 80 ( 3) TTATAAGATATGAGGTGCAAA 1 45 ( 2) GCTTATTAGAGGGGGAACTTT 1 37 ( 3) AAGAGATTTAGGAGGCACAAC 1 73 ( 4) TGGAATTAGAGGAGGAAGTCA 1 94 ( 5) CCCTTTATAAGGGGTGGAATA 1 49 ( 4) TAGAGATAATGGAGGTTTCCT 1 36 ( 3) TCCAAGAACAGGAGTGATCAC 1 26 ( 4) AGCTTTTAACGGAGGTGGAGA 1 71 ( 1) TAAAATAAAAGGAGAGATATT 1 141 ( 1) ATTGATATATGGAGGGAAAAA 1 119 ( 1) GATTCCGAAGGGAGGTCACAG 1 90 ( 5) GCGTTGGAAAAGAGGTAAGTA 1 54 ( 2) TACAGTTATAAGAGGGGACAA 1 32 ( 4) CTTCAAATACAGAGGTGAAAA 1 23 ( 4) TGGTTGTGTAGGAGGAAACAT 1 0 ( 1) AATTAGGAAAGGAGTGAGCAC 1 148 ( 2) CAAAGAAAAAGGAGGTTTGGG 1 136 ( 3) TTCGAAAAAGGGAGGGATAGT 1 115 ( 3) CTGAAAAGAAGGAGGGATAGT 1 19 ( 4) TATTTAATGAAGGGGTGCTTC 1 4 ( 2) TAATTTAAAAGGAAGTGACGA 1 111 ( 1) AAAAAGCAGGGGAGGTGCTCG 1 79 ( 4) AATAAAGAGGGGAGGAAAATG 1 85 ( 5) ACTGGAGTTAGGAGGTGAGCG 1 77 ( 4) CAGAGAAAAAGGATGTAAAAA 1 55 ( 2) TTTTAGAAAGTGAGGCTACTT 1 48 ( 2) AAAGAGAAAAGGTGGTGAAAC 1 6 ( 1) TTAGTGATTGGGAGGTAATGA 1 110 ( 4) ACAAACGAAGGGAGGATATGT 1 34 ( 4) GACAGGATAAAGAGGGATCAC 1 30 ( 3) GATTATGAAAGGGGGCTGGAC 1 63 ( 4) TTGAAAGATAGGAGTGGATAA 1 47 ( 3) ATTCGGGTTTGGAGGTGTCAC 1 35 ( 2) CGAAACAGGCGGAGGAAATTA 1 13 ( 5) CTTATCATTAGGGGGAGTATT 1 131 ( 4) TTTGAAGAAGGGAGATCACAC 1 72 ( 2) AGAGAAGAAAGGAAGTTACAC 1 57 ( 3) TTAGCGGAAAAGAGGAATAAA 1 44 ( 5) TCCTATGTGAGGTGGAGTGTA 1 3 ( 4) TCGTGATTAAAGAGGACTAAA 1 106 ( 4) CAATTAGGAAGGAGAAGAATA 1 16 ( 4) AAAATCATAGTGAGGTGATTA 1 38 ( 4) AAAAAGAAAAGGATGAACAAG 1 147 ( 2) TAAATAGAAGAGAGGGAGATA 1 93 ( 5) GGAATTTGCAGGAGGCGATCT 1 84 ( 3) AATAAAGAGAAGGGGTAATAA 1 52 ( 4) CGTCTGTAAAGGAAGAATAAA 1 18 ( 4) TTAAATAAAGAGATGTGATAC 1 116 ( 2) AAGTAAAGGAGGGGGCTACTT 1 67 ( 4) GGAATATTTAGGAGGATGAAT 1 11 ( 5) AGTCATGAAGGGAGAAAAACC 1 149 ( 1) AAAAAATGAGAGAGGTGTATG 1 62 ( 2) CTTTTAAGGAGGAGCATTTTT 1 81 ( 3) ATTCATGTAAGGGGGAATGGA 1 75 ( 3) TATGGGAAAAGGAGTCTTTAG 1 108 ( 4) GGGCGACAAAGGAGGGAAAAT 1 64 ( 3) GGATAAAGAGGGAGGTTAAGG 1 42 ( 4) ACATATCGTGTGAGGTGTACA 1 15 ( 1) AAAACAGAGAGGATGATATTA 1 102 ( 4) TAAGATTTAAGGGGTGAAGCA 1 33 ( 2) CACAGAATGATGAGGTGAGTG 1 29 ( 5) AAAAAGAAAAGGGTGGTAACA 1 25 ( 1) GATATGGAGAAGAGGTTGATG 1 51 ( 2) TAATAAACTTGGAGGGTGATT 1 7 ( 2) GTCTATCTTAGGGGGAAATGT 1 21 ( 1) TAGATTAATAAGGGGAATGTA 1 76 ( 4) AAATTTATAGGGAGAGGGAAA 1 39 ( 3) TGGGAGTGAGGGGGGCTTTTA 1 91 ( 4) GCGGAAGAAAGGAGAGATAGC 1 53 ( 4) ATCGTTTAACTGGGGTGGTAA 1 129 ( 2) GCGGTCAATCTGAGGTGATTT 1 95 ( 2) GTGTGGGTTCGGGGGGTACAA 1 82 ( 1) ATGATTCGAAAGAGGGTGATG 1 125 ( 4) AGGCGAGAAAGGAGTGACCGA 1 56 ( 5) TAGAAGTAAAGGAAATACATT 1 140 ( 2) AGGGAAAGAAAGAGGTTGAAG 1 92 ( 5) TCATCCTCTCGGAGATCAGTA 1 78 ( 4) ATAGAGAATTGGAGTGATAAA 1 66 ( 3) TTAGTGAAGCGGTGGGTAAAT 1 31 ( 3) GGATCAATTAGGATGGATGAA 1 145 ( 1) AAGATGGTATGGATGTGAGCA 1 43 ( 3) CTTATAATAAAGAAGACTGCC 1 65 ( 3) AAACTTGCTAAGGGGTATGAG 1 133 ( 2) ATAAACAGGAGGTGCTACTAA 1 117 ( 3) TGAAGAAATTGGTGGTGAAAG 1 14 ( 2) TAAATTTTGGAGGGCTAAAAC 1 5 ( 3) TCAACAGAAATGAGTGTGAGA 1 69 ( 4) CACGAAGAAAGGAAACCCAAG 1 87 ( 2) CAAAGTTGAGAGAAGCAAATG 1 130 ( 5) AACAAAAGCGAGGGGAAGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 750 bayes= 4.16506 E= 7.8e-113 -12 63 -83 53 0 88 -76 20 6 63 -59 16 8 -18 -83 59 31 -18 -97 36 -3 -60 -33 53 14 -118 -4 16 56 -144 -83 8 66 -177 -70 -21 86 -44 -70 -180 -125 -1371 143 -197 -1371 -1371 178 -1371 115 -1371 -112 -264 -284 -1371 162 -216 -247 -218 152 -164 -56 -18 -20 79 21 -77 -20 12 26 56 -112 20 14 56 -104 36 21 48 -159 49 21 88 -53 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 134 E= 7.8e-113 0.343284 0.156716 0.164179 0.335821 0.373134 0.186567 0.171642 0.268657 0.388060 0.156716 0.194030 0.261194 0.395522 0.089552 0.164179 0.350746 0.462687 0.089552 0.149254 0.298507 0.365672 0.067164 0.231343 0.335821 0.410448 0.044776 0.283582 0.261194 0.552239 0.037313 0.164179 0.246269 0.589552 0.029851 0.179104 0.201493 0.679104 0.074627 0.179104 0.067164 0.156716 0.000000 0.783582 0.059701 0.000000 0.000000 1.000000 0.000000 0.828358 0.000000 0.134328 0.037313 0.052239 0.000000 0.895522 0.052239 0.067164 0.022388 0.835821 0.074627 0.253731 0.089552 0.253731 0.402985 0.432836 0.059701 0.253731 0.253731 0.447761 0.149254 0.134328 0.268657 0.410448 0.149254 0.141791 0.298507 0.432836 0.141791 0.097015 0.328358 0.432836 0.186567 0.201493 0.179104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AT][AT][AT][AT][AT][ATG][AGT][AT][AT]AGGAGG[TAG][AGT][AT][AT][AT][AG] -------------------------------------------------------------------------------- Time 2.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 0 4.50e-03 25 1 1.09e-04 2_[1(2.17e-05)]_2 2 3.41e-01 25 3 1.07e-02 25 4 5.66e-03 25 5 1.18e-01 25 6 7.06e-03 25 7 3.21e-02 25 8 1.07e-03 25 9 8.76e-05 1_[1(1.75e-05)]_3 10 2.41e-04 1_[1(4.81e-05)]_3 11 1.74e-02 25 12 9.74e-01 25 13 8.75e-03 25 14 1.11e-01 25 15 2.29e-02 25 16 1.19e-02 25 17 4.12e-04 1_[1(8.24e-05)]_3 18 1.59e-02 25 19 5.66e-03 25 20 6.76e-04 25 21 3.48e-02 25 22 1.20e-06 2_[1(2.40e-07)]_2 23 4.50e-03 25 24 5.65e-01 25 25 2.95e-02 25 26 3.14e-03 25 27 7.21e-01 25 28 3.00e-01 25 29 2.95e-02 25 30 7.87e-03 25 31 6.75e-02 25 32 4.00e-03 25 33 2.95e-02 25 34 7.87e-03 25 35 8.75e-03 25 36 3.14e-03 25 37 2.14e-03 25 38 1.31e-02 25 39 3.76e-02 25 40 3.46e-04 3_[1(6.92e-05)]_1 41 1.23e-03 25 42 2.29e-02 25 43 7.21e-02 25 44 9.70e-03 25 45 2.14e-03 25 46 4.40e-01 25 47 8.75e-03 25 48 7.06e-03 25 49 3.14e-03 25 50 1.64e-04 [1(3.27e-05)]_4 51 3.21e-02 25 52 1.59e-02 25 53 4.07e-02 25 54 4.00e-03 25 55 7.06e-03 25 56 5.48e-02 25 57 9.70e-03 25 58 1.07e-03 25 59 2.89e-04 1_[1(5.79e-05)]_3 60 7.04e-01 25 61 2.41e-04 1_[1(4.81e-05)]_3 62 1.91e-02 25 63 8.75e-03 25 64 2.29e-02 25 65 9.31e-02 25 66 6.30e-02 25 67 1.74e-02 25 68 1.64e-03 25 69 1.25e-01 25 70 2.41e-01 25 71 3.55e-03 25 72 9.70e-03 25 73 2.44e-03 25 74 2.70e-01 25 75 2.09e-02 25 76 3.76e-02 25 77 7.06e-03 25 78 6.30e-02 25 79 6.33e-03 25 80 2.14e-03 25 81 2.09e-02 25 82 5.09e-02 25 83 1.09e-04 1_[1(2.17e-05)]_3 84 1.59e-02 25 85 7.06e-03 25 86 4.88e-04 1_[1(9.76e-05)]_3 87 1.78e-01 25 88 1.09e-04 2_[1(2.17e-05)]_2 89 1.07e-03 25 90 4.00e-03 25 91 4.07e-02 25 92 6.30e-02 25 93 1.59e-02 25 94 3.14e-03 25 95 5.09e-02 25 96 1.00e+00 25 97 3.46e-04 2_[1(6.92e-05)]_2 98 1.99e-04 3_[1(3.98e-05)]_1 99 4.88e-04 3_[1(9.76e-05)]_1 100 1.09e-04 2_[1(2.17e-05)]_2 101 7.91e-01 25 102 2.95e-02 25 103 4.88e-04 2_[1(9.76e-05)]_2 104 2.14e-03 25 105 1.23e-03 25 106 1.19e-02 25 107 2.67e-05 2_[1(5.35e-06)]_2 108 2.29e-02 25 109 3.45e-06 2_[1(6.91e-07)]_2 110 7.87e-03 25 111 6.33e-03 25 112 1.09e-04 3_[1(2.17e-05)]_1 113 9.20e-04 25 114 1.64e-04 2_[1(3.27e-05)]_2 115 5.66e-03 25 116 1.74e-02 25 117 1.11e-01 25 118 1.64e-04 1_[1(3.27e-05)]_3 119 4.00e-03 25 120 2.41e-04 [1(4.81e-05)]_4 121 6.76e-04 25 122 1.42e-03 25 123 5.75e-04 25 124 1.64e-04 2_[1(3.27e-05)]_2 125 5.48e-02 25 126 8.76e-05 [1(1.75e-05)]_4 127 2.14e-03 25 128 1.87e-03 25 129 4.39e-02 25 130 2.13e-01 25 131 9.70e-03 25 132 6.54e-06 2_[1(1.31e-06)]_2 133 1.05e-01 25 134 4.86e-01 25 135 7.02e-05 2_[1(1.40e-05)]_2 136 5.66e-03 25 137 9.20e-04 25 138 5.11e-01 25 139 7.30e-01 25 140 6.30e-02 25 141 4.00e-03 25 142 2.41e-04 2_[1(4.81e-05)]_2 143 3.31e-01 25 144 6.09e-01 25 145 7.21e-02 25 146 2.14e-03 25 147 1.44e-02 25 148 5.05e-03 25 149 1.91e-02 25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 1 reached. ******************************************************************************** CPU: kodomo.fbb.msu.ru ********************************************************************************