BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteo.fasta 48,182 sequences; 14,146,411 total letters Query= Length=4020 Score E Sequences producing significant alignments: (Bits) Value sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding sub... 843 0.0 sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub... 741 0.0 sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding sub... 724 0.0 sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding sub... 686 0.0 sp|Q8CNY5|CLPX_STAES ATP-dependent Clp protease ATP-binding sub... 600 0.0 sp|A7X396|CLPX_STAA1 ATP-dependent Clp protease ATP-binding sub... 597 0.0 sp|A7FYI1|CLPX_CLOB1 ATP-dependent Clp protease ATP-binding sub... 597 0.0 sp|Q891J8|CLPX_CLOTE ATP-dependent Clp protease ATP-binding sub... 590 0.0 sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding sub... 576 0.0 tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s... 568 0.0 sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding sub... 563 4e-180 sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding sub... 551 9e-176 tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding s... 546 5e-174 sp|P63791|CLPX_STRPN ATP-dependent Clp protease ATP-binding sub... 540 5e-172 tr|Q1GAP8|Q1GAP8_LACDA ATP-dependent Clp protease ATP-binding s... 538 3e-171 tr|J7M389|J7M389_STRP1 ATP-dependent protease ATP-binding subun... 503 1e-159 sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU 106 4e-23 sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU 104 1e-22 sp|Q8CPH0|HSLU_STAES ATP-dependent protease ATPase subunit HslU 102 6e-22 sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU 102 6e-22 sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY 102 9e-22 sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU 102 1e-21 sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU 101 2e-21 C3F5U0_BACAN ATP-dependent protease ATPase subunit HslU 101 2e-21 sp|Q1G9V4|HSLU_LACDA ATP-dependent protease ATPase subunit HslU 99.4 7e-21 sp|A7X1N1|HSLU_STAA1 ATP-dependent protease ATPase subunit HslU 99.4 7e-21 tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit 70.9 2e-11 tr|Q97N72|Q97N72_STRPN ATP-dependent Clp protease, ATP-binding ... 65.5 7e-10 B0AY46_BACAN Negative regulator of genetic competence ClpC/MecB 64.7 1e-09 tr|Q890L5|Q890L5_CLOTE Negative regulator of genetic competence... 61.6 1e-08 sp|P37571|CLPC_BACSU Negative regulator of genetic competence C... 59.7 4e-08 sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding sub... 59.3 5e-08 tr|A2RIW9|A2RIW9_LACLM ATP-dependent Clp protease ATP-binding s... 59.3 6e-08 tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C 58.5 1e-07 tr|A7WYU0|A7WYU0_STAA1 Endopeptidase 56.2 5e-07 tr|Q1G869|Q1G869_LACDA ATP-dependent Clp protease, ATP-binding ... 56.2 5e-07 tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease 55.8 5e-07 tr|Q899V4|Q899V4_CLOTE Negative regulator of genetic competence... 55.8 6e-07 tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH 55.8 6e-07 tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s... 55.5 9e-07 sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding sub... 54.3 2e-06 tr|A7FZ97|A7FZ97_CLOB1 Putative negative regulator of genetic c... 53.9 2e-06 tr|Q99XR9|Q99XR9_STRP1 Negative regulator of genetic competence 53.1 4e-06 tr|J7MBF9|J7MBF9_STRP1 Negative regulator of genetic competence 53.1 4e-06 tr|A7FYT8|A7FYT8_CLOB1 ATP-dependent zinc metalloprotease FtsH 52.8 4e-06 tr|Q82YZ7|Q82YZ7_ENTFA ATP-dependent Clp protease, ATP-binding ... 52.8 5e-06 tr|Q97SK0|Q97SK0_STRPN Putative ATP-dependent Clp protease, ATP... 52.4 7e-06 tr|Q5FM98|Q5FM98_LACAC ATPase 50.8 2e-05 tr|Q1GBM8|Q1GBM8_LACDA ATP-dependent Clp protease, ATP-binding ... 48.1 1e-04 tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH 47.4 2e-04 tr|J7M6I1|J7M6I1_STRP1 ATP-dependent zinc metalloprotease FtsH 47.0 3e-04 tr|Q891B9|Q891B9_CLOTE ATP-dependent zinc metalloprotease FtsH 47.0 3e-04 tr|Q899H3|Q899H3_CLOTE ATP-dependent zinc metalloprotease FtsH 46.2 5e-04 tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding ... 46.2 5e-04 sp|O69076|FTSH_STRPN ATP-dependent zinc metalloprotease FtsH 46.2 5e-04 sp|Q898C7|CLPB_CLOTE Chaperone protein ClpB 45.8 7e-04 > sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX; Length=420 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 420/420 (100%), Positives = 420/420 (100%), Gaps = 0/420 (0%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD Sbjct 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 3720 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS Sbjct 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 Query 3721 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 3780 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 3781 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 3840 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 3841 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 3900 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 Query 3901 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 3960 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK Sbjct 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 Query 3961 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 4020 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA Sbjct 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 > sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding subunit ClpX; Length=419 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 366/420 (87%), Positives = 393/420 (94%), Gaps = 1/420 (0%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFN+EKGQLKCSFCGKTQ QVRKLVAGPGVYICDECIELCTEIV+EEL +EEVEFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 3720 VPKP EIREIL+EYVIGQD AKK+LAVAVYNHYKRINSNSK+DDVEL+KSNI+LIGPTGS Sbjct 61 VPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS 120 Query 3721 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 3780 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 3781 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 3840 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 3841 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 3900 LFICGGAFDGIE IIKRRLG+KVIGFG++ K AD+ ++ +LS VLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIG 300 Query 3901 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 3960 RLPVIA+LE LDE+ALV ILTKPKNALVKQF+K+LELD+VELEFEE AL EIAKKAIERK Sbjct 301 RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK 360 Query 3961 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 4020 TGARGLRSIIEG+ML+VMFELPSR DIEKC++T TV P+L+L+DGT V KTSA Sbjct 361 TGARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETVADNAAPKLVLQDGT-VLDTKTSA 419 > sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding subunit ClpX; Length=421 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 363/421 (86%), Positives = 393/421 (93%), Gaps = 1/421 (0%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELG EEE EFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGNEEEFEFKD 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 3720 VPKP EIREIL+EYVIGQD+AKKSLAVAVYNHYKRINS SK+DDVELSKSNI +IGPTGS Sbjct 61 VPKPLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGS 120 Query 3721 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 3780 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE+AEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYI 180 Query 3781 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 3840 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query 3841 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 3900 LFICGGAFDGIE IIKRRLG+KVIGFGA+ D+++++LLSKVLPEDLL+FGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLIPEFIG 300 Query 3901 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 3960 RLPVI +LE LDE+AL+ ILTKPKNA+VKQ++KMLELD VELEFEE AL EIAKKAIERK Sbjct 301 RLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKKAIERK 360 Query 3961 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVS-QDKTS 4019 TGARGLRSIIEGIMLDVMFELPSR+D++KC+IT TV +PP L+ DGT + + KTS Sbjct 361 TGARGLRSIIEGIMLDVMFELPSREDVQKCIITLDTVRGTKPPTLIRHDGTVIELERKTS 420 Query 4020 A 4020 A Sbjct 421 A 421 > sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding subunit ClpX; Length=419 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 347/421 (82%), Positives = 381/421 (90%), Gaps = 3/421 (1%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELC EI+EEELG E V+F + Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNEIIEEELGISEFVDFGE 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSN-SKVDDVELSKSNISLIGPTG 3719 VPKPQEIR IL++YVIGQ++AKK+LAVAVYNHYKRINSN +K D+VELSKSNI LIGPTG Sbjct 61 VPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTG 120 Query 3720 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 3779 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ+ADYDVEKAEKGIIY Sbjct 121 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIY 180 Query 3780 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 3839 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE IQIDT N Sbjct 181 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGN 240 Query 3840 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 3899 ILFI GGAFDGIEQI+K R+G+KVIGFG DN A + E LS+V+PEDLL+FGLIPEFI Sbjct 241 ILFIVGGAFDGIEQIVKNRMGEKVIGFGTDN-AKLKDDETYLSRVVPEDLLKFGLIPEFI 299 Query 3900 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 3959 GRLPVIA+LE+LDE ALV+ILT+PKNALVKQ+K+MLELD+VELEFE AL EIAK+AIER Sbjct 300 GRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIER 359 Query 3960 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 4019 KTGARGLRSIIE IML+VMFE+PSRDDI KC+IT E P+L L+DG+ + KTS Sbjct 360 KTGARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEEPQLQLEDGS-IIPIKTS 418 Query 4020 A 4020 A Sbjct 419 A 419 > sp|Q8CNY5|CLPX_STAES ATP-dependent Clp protease ATP-binding subunit ClpX; Length=420 Score = 600 bits (1548), Expect = 0.0, Method: Composition-based stats. Identities = 303/421 (72%), Positives = 357/421 (85%), Gaps = 2/421 (0%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL F + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEGFTE 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 3719 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTG 120 Query 3720 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 3779 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 3780 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 3839 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTN 240 Query 3840 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 3899 ILFI GGAFDGI+++IKRRLG+KVIGF A N+A ++E LL ++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIDEVIKRRLGEKVIGF-ASNEADKYDEEALLEQIRPEDLQSYGLIPEFI 299 Query 3900 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 3959 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELDNVELEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKAIER 359 Query 3960 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 4019 KTGARGLRSIIE ++D+M+++PS +++ K VIT T+ P L +G ++++KTS Sbjct 360 KTGARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEIEPELYDDEGNLINKNKTS 419 Query 4020 A 4020 A Sbjct 420 A 420 > sp|A7X396|CLPX_STAA1 ATP-dependent Clp protease ATP-binding subunit ClpX; Length=420 Score = 597 bits (1538), Expect = 0.0, Method: Composition-based stats. Identities = 301/421 (71%), Positives = 356/421 (85%), Gaps = 2/421 (0%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 3719 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI K DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG 120 Query 3720 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 3779 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 3780 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 3839 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN 240 Query 3840 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 3899 ILFI GGAFDGIE++IKRRLG+KVIGF + N+A +++ LL+++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIEEVIKRRLGEKVIGF-SSNEADKYDEQALLAQIRPEDLQAYGLIPEFI 299 Query 3900 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 3959 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELD+V+LEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIER 359 Query 3960 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 4019 KTGARGLRSIIE ++D+MF++PS +++ K VIT T+ P L +G ++ KTS Sbjct 360 KTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTS 419 Query 4020 A 4020 A Sbjct 420 A 420 > sp|A7FYI1|CLPX_CLOB1 ATP-dependent Clp protease ATP-binding subunit ClpX; Length=429 Score = 597 bits (1539), Expect = 0.0, Method: Composition-based stats. Identities = 287/400 (72%), Positives = 344/400 (86%), Gaps = 5/400 (1%) Query 3606 EEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQ 3665 +EK QLKCSFCGKTQDQVR+L+AGPGVYICDECIELC+EI+ +E + +V+ +PKP Sbjct 5 DEKKQLKCSFCGKTQDQVRRLIAGPGVYICDECIELCSEIINDEFEDDIQVDLTSLPKPT 64 Query 3666 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 3725 EI+ L++YVIGQ+ AKKSL+VAVYNHYKRINSN+ DDVEL KSNI L+GPTGSGKTLL Sbjct 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGPTGSGKTLL 124 Query 3726 AQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDK 3785 AQTLA+ LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYD+EKAEKGI+YIDEIDK Sbjct 125 AQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAEKGIVYIDEIDK 184 Query 3786 VARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICG 3845 +ARKSENPSITRDVSGEGVQQALLKILEGTVA+VPPQGGRKHPHQEFIQI+TTNILFICG Sbjct 185 IARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQINTTNILFICG 244 Query 3846 GAFDGIEQIIKRRLGQKVIGFGAD---NKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRL 3902 GAFDG+++II+RR +GFGA+ K DL K LL ++P DLL+FGLIPEFIGRL Sbjct 245 GAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGK--LLKDIMPGDLLKFGLIPEFIGRL 302 Query 3903 PVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTG 3962 P++ +L+KLD EAL+ ILT+PKNALVKQ+KK+ ELD+VELEF +EAL EIA +AI R TG Sbjct 303 PIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTG 362 Query 3963 ARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEP 4002 ARGLR+IIE +M ++MF++PS+++I K ++ + +P Sbjct 363 ARGLRAIIEDMMREIMFDIPSQENIGKVIVNEDCIKTKKP 402 > sp|Q891J8|CLPX_CLOTE ATP-dependent Clp protease ATP-binding subunit ClpX; Length=431 Score = 590 bits (1522), Expect = 0.0, Method: Composition-based stats. Identities = 287/399 (72%), Positives = 341/399 (85%), Gaps = 1/399 (0%) Query 3605 NEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKP 3664 N++K QLKCSFCGK QDQV++LVAGPGVYICDECIELC+EI+ +EL + + +PKP Sbjct 6 NDDKKQLKCSFCGKKQDQVKRLVAGPGVYICDECIELCSEIITDELEEDINTDMSSLPKP 65 Query 3665 QEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTL 3724 EI+ L++YVIGQD AKK+L+VAVYNHYKRIN N+ DDVEL KSNI L+GPTGSGKTL Sbjct 66 SEIKSYLDDYVIGQDDAKKALSVAVYNHYKRINLNNVNDDVELQKSNILLLGPTGSGKTL 125 Query 3725 LAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEID 3784 LAQT+A+ LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYD+EKAE+GIIYIDEID Sbjct 126 LAQTMAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAERGIIYIDEID 185 Query 3785 KVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIC 3844 K+ARKSENPSITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHPHQEFIQ++TTNILFIC Sbjct 186 KIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPHQEFIQLNTTNILFIC 245 Query 3845 GGAFDGIEQIIKRRLGQKVIGFGADNKAA-DLEKEDLLSKVLPEDLLRFGLIPEFIGRLP 3903 GGAFDG++++I+RR +GFGAD K+ D +LL K++PEDLL+FGLIPEFIGRLP Sbjct 246 GGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMPEDLLKFGLIPEFIGRLP 305 Query 3904 VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGA 3963 + +L LD +ALV ILT+PKNALVKQ+KK+ E+DNV LEF+EEAL IA++AI R TGA Sbjct 306 ITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAEEAIRRSTGA 365 Query 3964 RGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEP 4002 RGLRSIIE IM D+MFE+PS + I K +I TV++ P Sbjct 366 RGLRSIIEEIMKDIMFEIPSDESISKVIINEETVSNKNP 404 > sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding subunit ClpX; Length=417 Score = 576 bits (1484), Expect = 0.0, Method: Composition-based stats. Identities = 289/396 (73%), Positives = 340/396 (86%), Gaps = 4/396 (1%) Query 3601 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 3660 M+ + G ++CSFCGKTQ++V+K+VAGPGVYIC+ECI+LC EI++EE E E D Sbjct 1 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD 60 Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKV---DDVELSKSNISLIGP 3717 VPKPQEI +LNEYVIGQ++AK++L+VAVYNHYKR+N + DDVEL KSNI LIGP Sbjct 61 VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP 120 Query 3718 TGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGI 3777 TGSGKT LAQTLA+ LNVPFAIADATSLTEAGYVGEDVENILLKL+Q+ADY+VE+AEKGI Sbjct 121 TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI 180 Query 3778 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 3837 IYIDEIDK+ARKSEN SITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT Sbjct 181 IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 240 Query 3838 TNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPE 3897 TN+LFI GGAFDGIE I+K RLG+K IGFG N A + E+E ++ ++PEDLL+FGLIPE Sbjct 241 TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALN-EEESIMQHIIPEDLLKFGLIPE 299 Query 3898 FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI 3957 FIGRLPV+A+L+KL + LV ILT+PKNALVKQ++K+L LD+ +LEFE EAL IA KAI Sbjct 300 FIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAI 359 Query 3958 ERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 3993 ER TGARGLRSIIE IM+DVMF++PS + IEK +IT Sbjct 360 ERNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIIT 395 > tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding subunit ClpX; Length=411 Score = 568 bits (1465), Expect = 0.0, Method: Composition-based stats. Identities = 266/405 (66%), Positives = 345/405 (85%), Gaps = 2/405 (0%) Query 3606 EEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFK-DVPKP 3664 + + Q KCSFCGK+QD+V+KL+AGPGV+ICDEC+ LC I+EEE + ++ + D+PKP Sbjct 3 KNENQYKCSFCGKSQDEVKKLIAGPGVFICDECVSLCNSIIEEEFKDVDNIQERIDLPKP 62 Query 3665 QEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTL 3724 EI+++L++YVI Q++ KK+LAVAVYNHYKRINSN +DVEL KSNI L+GPTGSGKTL Sbjct 63 IEIKDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGKTL 122 Query 3725 LAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEID 3784 LA+TLA+IL+VPFAIADATSLTEAGYVGEDVEN++LKLIQAADYD+EKAE+GIIYIDEID Sbjct 123 LAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIYIDEID 182 Query 3785 KVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIC 3844 K+ RKSENPSITRDVSGEGVQQALLKI+EGT+ +VPPQGGRKHP+QE+IQ+DT NILFI Sbjct 183 KITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIV 242 Query 3845 GGAFDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLP 3903 GGAF+G+E+II+RR K IGFGAD + +K +L PEDL++FGLIPEF+GR+P Sbjct 243 GGAFEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGLIPEFVGRIP 302 Query 3904 VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGA 3963 V+ +L++LDE+AL+ IL +PKNA++KQ++++ ++D+VELEF+E+AL IAK A +RKTGA Sbjct 303 VLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGA 362 Query 3964 RGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK 4008 RGLR+IIE ++++MFELPSR DI K ++T +V G+ P+L+ K Sbjct 363 RGLRTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLVFK 407 > sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding subunit ClpX; Length=411 Score = 563 bits (1452), Expect = 4e-180, Method: Composition-based stats. Identities = 275/404 (68%), Positives = 346/404 (86%), Gaps = 3/404 (1%) Query 3605 NEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKP 3664 N + ++CSFCGK+QD V+K++AG VYIC+ECIEL T I+EEEL E++ E +V P Sbjct 3 NTQNPNIQCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELKEEQDSEMLEVKTP 62 Query 3665 QEIREILNEYVIGQDQAKKSLAVAVYNHYKRIN-SNSKV-DDVELSKSNISLIGPTGSGK 3722 +E+ + LNEYVIGQ++AK++LAVAVYNHYKRIN + SK+ +D+EL KSNI LIGPTGSGK Sbjct 63 KEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGK 122 Query 3723 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 3782 T LAQTLA+ LNVPFAIADATSLTEAGYVGEDVENILLKL+QA+D+++E+AE+GIIYIDE Sbjct 123 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAERGIIYIDE 182 Query 3783 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 3842 IDK+A+KSEN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILF Sbjct 183 IDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILF 242 Query 3843 ICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRL 3902 I GGAFDGIE+I+K+RLG+K+IGFGA+NK +++ + +++ ED+ +FGLIPEFIGRL Sbjct 243 IVGGAFDGIEEIVKQRLGEKIIGFGANNKKLS-DEDSYMQEIIAEDIQKFGLIPEFIGRL 301 Query 3903 PVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTG 3962 P++A+LE+L EE L+ ILT+PKNAL+KQ+K++L DNVELEF++ AL IAKKAIERKTG Sbjct 302 PIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKAIERKTG 361 Query 3963 ARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLL 4006 ARGLRSIIE +M+D+MFE+PS ++I K +IT A V P ++ Sbjct 362 ARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAVVDGKAEPEMI 405 > sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding subunit ClpX; Length=409 Score = 551 bits (1420), Expect = 9e-176, Method: Composition-based stats. Identities = 264/398 (66%), Positives = 332/398 (83%), Gaps = 3/398 (1%) Query 3610 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 3669 ++ CSFCGK+QD V+K++AG V+IC+EC+ L EI++EEL E + +VPKP+E+ + Sbjct 10 KVYCSFCGKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLD 69 Query 3670 ILNEYVIGQDQAKKSLAVAVYNHYKRIN--SNSKVDDVELSKSNISLIGPTGSGKTLLAQ 3727 +LN+YV+GQD+AK++L+VAVYNHYKR++ + DDV+L KSNI +IGPTGSGKT LAQ Sbjct 70 VLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQ 129 Query 3728 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 3787 TLA+ LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADY+VE+AE+GIIY+DEIDK+A Sbjct 130 TLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIA 189 Query 3788 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 3847 +K EN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILFI GGA Sbjct 190 KKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGA 249 Query 3848 FDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIAS 3907 FDGIE+I+K+RLG+KVIGFG +++ D + + +++ ED+ +FGLIPEFIGRLPV+A+ Sbjct 250 FDGIEEIVKQRLGEKVIGFGQNSRKID-DNASYMQEIISEDIQKFGLIPEFIGRLPVVAA 308 Query 3908 LEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLR 3967 LE+L+ L+ ILT+P+NALVKQ++ +L D VEL F++EAL IA KAIERKTGARGLR Sbjct 309 LEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLR 368 Query 3968 SIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 4005 SIIE MLD+MFE+PS++D+ K IT A V P L Sbjct 369 SIIEETMLDIMFEIPSQEDVTKVRITKAAVEGKSKPVL 406 > tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding subunit ClpX; Length=420 Score = 546 bits (1408), Expect = 5e-174, Method: Composition-based stats. Identities = 259/407 (64%), Positives = 332/407 (82%), Gaps = 0/407 (0%) Query 3607 EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQE 3666 ++ ++KC+FCGKTQDQV+K++AG GVYIC+EC++L +I+++EL + ++PKP E Sbjct 7 DQEEIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKTASELPKPVE 66 Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 I++ L++YVIGQD+AKK L+VAVYNHYKRI+ EL KSNI++IGPTGSGKT LA Sbjct 67 IKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKTYLA 126 Query 3727 QTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKV 3786 QTLARILNVPFAIADAT+LTEAGYVGEDVENILLKL+Q ADYD+E+A++GIIYIDEIDK+ Sbjct 127 QTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEIDKI 186 Query 3787 ARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGG 3846 ++KSEN SITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHP QE I++DTTNILFI GG Sbjct 187 SKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGG 246 Query 3847 AFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIA 3906 AFDGIEQI+K RLG+K IGFGA+N+ ++ +D + DL++FG+IPEFIGR+P+I Sbjct 247 AFDGIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLTTADLVKFGMIPEFIGRIPIIT 306 Query 3907 SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL 3966 +L+KLD + LV +LT+PKNALVKQ+KK+L LD VEL+F + AL IA AI+R GARGL Sbjct 307 TLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIADLAIQRNMGARGL 366 Query 3967 RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEV 4013 R+IIE ++D+M+E PS +DIE +T +T PR+ K+ EV Sbjct 367 RTIIENSIMDIMYETPSEEDIESVEVTKDVITRHAQPRITRKNAEEV 413 > sp|P63791|CLPX_STRPN ATP-dependent Clp protease ATP-binding subunit ClpX; Length=410 Score = 540 bits (1392), Expect = 5e-172, Method: Composition-based stats. Identities = 265/396 (67%), Positives = 328/396 (83%), Gaps = 4/396 (1%) Query 3613 CSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILN 3672 CSFCGK Q++V+K++AG +IC+EC+EL EI+ EEL E + +VPKP E+ ILN Sbjct 13 CSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILN 72 Query 3673 EYVIGQDQAKKSLAVAVYNHYKRIN---SNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 3729 YVIGQD+AK++LAVAVYNHYKRIN + + +DV+L KSNI +IGPTGSGKT LAQTL Sbjct 73 HYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTL 132 Query 3730 ARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARK 3789 A+ LNVPFAIADAT+LTEAGYVGEDVENILLKL+Q AD+++E+AE+GIIY+DEIDK+A+K Sbjct 133 AKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIYVDEIDKIAKK 192 Query 3790 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFD 3849 SEN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP QE IQ+DT NILFI GGAFD Sbjct 193 SENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFD 252 Query 3850 GIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLE 3909 GIE+I+K+RLG+KVIGFG +NKA D E + +++ ED+ +FG+IPE IGRLPV A+LE Sbjct 253 GIEEIVKQRLGEKVIGFGQNNKAID-ENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALE 311 Query 3910 KLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSI 3969 +L + LV IL +P+NALVKQ++ +L D+VELEF++EAL EIA KAIERKTGARGLRSI Sbjct 312 QLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSI 371 Query 3970 IEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 4005 IE MLDVMFE+PS+++++ IT TV + P L Sbjct 372 IEETMLDVMFEVPSQENVKLVRITKETVDGTDKPIL 407 > tr|Q1GAP8|Q1GAP8_LACDA ATP-dependent Clp protease ATP-binding subunit ClpX; Length=417 Score = 538 bits (1387), Expect = 3e-171, Method: Composition-based stats. Identities = 260/414 (63%), Positives = 335/414 (81%), Gaps = 1/414 (0%) Query 3603 KFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVP 3662 KF + + ++KCSFCGK+ QV+K++AG GVYIC+E IEL I+++EL + E +++P Sbjct 4 KFTDPE-EVKCSFCGKSASQVKKMIAGNGVYICNEDIELAKRIIDDELRLDSLKETRELP 62 Query 3663 KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 3722 KP +I+E L++YVIGQD+AK+ L+VAVYNHYKRI+ EL KSNI+LIGPTGSGK Sbjct 63 KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGK 122 Query 3723 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 3782 T LAQTLARILNVPFAIADAT+LTEAGYVGEDVENILLKL+Q ADYD+E+A++GIIYIDE Sbjct 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDE 182 Query 3783 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 3842 IDK+++KSEN SITRDVSGEGVQQALLKILEGT+AS+PPQGGRKHP QE I++DTTNILF Sbjct 183 IDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRMDTTNILF 242 Query 3843 ICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRL 3902 I GGAFDGIE+I+K RLG+K IGFGA+ ++ ++ ++ + DL++FGLIPEFIGR+ Sbjct 243 IVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLIPEFIGRI 302 Query 3903 PVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTG 3962 P+I +L++LD LV ILT+PKNAL+KQ++K+L LD V+LEFE A+ +IA AIERK G Sbjct 303 PIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADLAIERKMG 362 Query 3963 ARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQD 4016 ARGLR+IIE M+D+M+ PS DI K +IT T+T P+++ ++ EV D Sbjct 363 ARGLRTIIENAMMDIMYRTPSESDISKIIITPETITGMGEPKVVRRELEEVVDD 416 > tr|J7M389|J7M389_STRP1 ATP-dependent protease ATP-binding subunit ClpX; Length=360 Score = 503 bits (1295), Expect = 1e-159, Method: Composition-based stats. Identities = 243/356 (68%), Positives = 300/356 (84%), Gaps = 5/356 (1%) Query 3654 EEV--EFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRIN--SNSKVDDVELSK 3709 EEV + +VPKP+E+ ++LN+YV+GQD+AK++L+VAVYNHYKR++ + DDV+L K Sbjct 3 EEVLADLTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQK 62 Query 3710 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 3769 SNI +IGPTGSGKT LAQTLA+ LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADY+ Sbjct 63 SNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYN 122 Query 3770 VEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPH 3829 VE+AE+GIIY+DEIDK+A+K EN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+ Sbjct 123 VERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPN 182 Query 3830 QEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDL 3889 QE IQIDT NILFI GGAFDGIE+I+K+RLG+KVIGFG +++ D + + +++ ED+ Sbjct 183 QEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKID-DNASYMQEIISEDI 241 Query 3890 LRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEAL 3949 +FGLIPEFIGRLPV+A+LE+L+ L+ ILT+P+NALVKQ++ +L D VEL F++EAL Sbjct 242 QKFGLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEAL 301 Query 3950 SEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 4005 IA KAIERKTGARGLRSIIE MLD+MFE+PS++D+ K IT A V P L Sbjct 302 EAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEGKSKPVL 357 > sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU; Length=465 Score = 106 bits (264), Expect = 4e-23, Method: Composition-based stats. Identities = 78/225 (35%), Positives = 113/225 (50%), Gaps = 56/225 (25%) Query 3774 EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 3833 + GII+IDEIDK+AR S S + DVS EGVQ+ +L I+EG+ ++ Sbjct 270 QSGIIFIDEIDKIAR-SGAVSGSADVSREGVQRDILPIVEGSTVMT-----------KYG 317 Query 3834 QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG 3893 + T +ILFI GAF ++K P DL Sbjct 318 PVKTDHILFIAAGAFH-------------------------------MAK--PSDL---- 340 Query 3894 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 3953 IPE GR P+ L KL + V IL +P NAL+KQ++ +L + + LEF ++A+ +IA Sbjct 341 -IPELQGRFPIRVELAKLSVDDFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIA 399 Query 3954 KKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 3993 + A E GAR L +I+E ++ D++FE P I+K VIT Sbjct 400 EVAFEVNQTTDNIGARRLHTILEKLLEDLLFEAPDI-GIDKVVIT 443 Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats. Identities = 44/103 (43%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I E L+++++GQ +AKK++A+A+ N Y+R + K+ D E+ NI +IGPTG GKT Sbjct 8 PRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRD-EVMPKNILMIGPTGVGKT 66 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 3766 +A+ LA+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 67 EIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 109 > sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU; Length=466 Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 90/145 (62%), Gaps = 14/145 (10%) Query 3661 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 3720 + P+EI +ILNEY+IGQD+AKKS+A+A+YN Y+R+ ++ E++ N+ + GPTG Sbjct 3 IKTPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQR-EITPKNLLMAGPTGV 61 Query 3721 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 3780 GKT +A+ LA I+ PF +AT TE GYVG DVE+++ L+ A + + Sbjct 62 GKTEIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEA-----------VRM 110 Query 3781 DEIDKVARKSENPSITRDVSGEGVQ 3805 +E D+ AR P T++ + E V+ Sbjct 111 EEKDQFARV--KPQATKEANKELVR 133 Score = 92.8 bits (229), Expect = 9e-19, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 119/239 (50%), Gaps = 66/239 (28%) Query 3767 DYD------VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 3819 DYD +E+++ GII+IDEIDK+ + N + +VS EGVQ+ +L I+EG+ + Sbjct 258 DYDTIYQRAIERSQNNGIIFIDEIDKII--AGNKRNSGEVSREGVQRDILPIVEGSTVNT 315 Query 3820 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 3879 ++ + T +ILFI GAF A++K +D Sbjct 316 -----------KYGPVSTDHILFIAAGAF-------------------AESKPSD----- 340 Query 3880 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 3939 LIPE GR P+ L L ++ V IL P+N+L+KQ+ +L+ D Sbjct 341 --------------LIPELQGRFPIRVELNALTKDDFVKILKDPQNSLLKQYIALLKADG 386 Query 3940 VELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 3993 ++L F +EA+ +IA+ A + GAR L +I+E ++ DV++E P D+E IT Sbjct 387 IKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLSTILEKLLEDVLYEGP---DMEMGEIT 442 > sp|Q8CPH0|HSLU_STAES ATP-dependent protease ATPase subunit HslU; Length=467 Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 57/239 (24%) Query 3751 VGEDVENILLKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALL 3809 + +D + L+ A +E AE+ GII+IDEIDKVA ++N +DVS +GVQ+ +L Sbjct 249 LADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG--QDVSRQGVQRDIL 306 Query 3810 KILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAD 3869 ILEG++ ++ ++T ++LFI GAF Sbjct 307 PILEGSMIQT-----------KYGTVNTEHMLFIGAGAFH-------------------- 335 Query 3870 NKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVK 3929 +SK P DL IPE GR P+ LE L E V ILT+PK +LVK Sbjct 336 -----------VSK--PSDL-----IPELQGRFPIRVELESLSVEDFVRILTEPKLSLVK 377 Query 3930 QFKKMLELDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPS 3983 Q++ +L+ + V + F E+A+ +A+ A + GAR L +I+E ++ D+ FE PS Sbjct 378 QYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 93.6 bits (231), Expect = 5e-19, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 80/124 (65%), Gaps = 2/124 (2%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I LNEY++GQ+ AK+ +A+A+ N Y+R + + + E++ NI +IGPTG GKT Sbjct 10 PKDIVSKLNEYIVGQNDAKRKVAIALRNRYRR-SLLKEEEKQEIAPKNILMIGPTGVGKT 68 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 3783 +A+ +A+I+ PF +AT TE GYVG DVE+++ L+ A V+ +K ++ DE Sbjct 69 EIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKKSLVK-DEA 127 Query 3784 DKVA 3787 K A Sbjct 128 TKKA 131 > sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU; Length=469 Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats. Identities = 85/266 (32%), Positives = 130/266 (49%), Gaps = 58/266 (22%) Query 3753 EDVENILLKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKI 3811 ED + L+ + A + +AE+ G+I+IDEIDK+A K + VS EGVQ+ +L I Sbjct 253 EDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNA--QVSREGVQRDILPI 310 Query 3812 LEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNK 3871 +EG+ S ++ ++T ILFI GAF Sbjct 311 VEGSQIST-----------KYGTVNTEYILFIAAGAFH---------------------- 337 Query 3872 AADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQF 3931 +SK P DL IPE GR P+ L+KL +E ILT+P NAL+KQ+ Sbjct 338 ---------MSK--PSDL-----IPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQY 381 Query 3932 KKMLELDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDD 3986 K +L+ + ++L F +EA+ IA+ A + GAR L +I+E ++ D++FE P + Sbjct 382 KALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEI-N 440 Query 3987 IEKCVITGATVTHGEPPRLLLKDGTE 4012 +E +T V P + KD T+ Sbjct 441 MESIKVTENYVNEKLAPIMQNKDLTQ 466 Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats. Identities = 47/103 (46%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I E L++Y+IGQ+ AKKS+AVA+ N Y+R + + D E+ NI +IGPTG GKT Sbjct 12 PKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRD-EIIPKNILMIGPTGVGKT 70 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 3766 +A+ +A+I+ PF+ +AT TE GYVG DVE+++ L++ + Sbjct 71 EIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVS 113 > sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY; Length=467 Score = 102 bits (253), Expect = 9e-22, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 57/241 (24%) Query 3759 LLKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA 3817 L+ + + V++AE+ GII+IDEIDK+A K+ S + DVS EGVQ+ +L I+EG+ Sbjct 256 LIDMDEVGQEAVQRAEESGIIFIDEIDKIA-KNGGASSSADVSREGVQRDILPIVEGSTV 314 Query 3818 SVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEK 3877 ++ + T ++LFI GAF Sbjct 315 VT-----------KYGSVKTDHVLFIAAGAFH---------------------------- 335 Query 3878 EDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLEL 3937 ++K P DL IPE GR P+ L KL + V IL +P NAL+KQ++ +L+ Sbjct 336 ---MAK--PSDL-----IPELQGRFPIRVELNKLTVDDFVRILVEPDNALLKQYQALLQT 385 Query 3938 DNVELEFEEEALSEIAKKA--IERKT---GARGLRSIIEGIMLDVMFELPSRDDIEKCVI 3992 + + LEF +EA+ +IA+ A + + T GAR L +I+E ++ D+ FE P +EK I Sbjct 386 EGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHTILERLLEDLSFEAPDV-TMEKITI 444 Query 3993 T 3993 T Sbjct 445 T 445 Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 99/174 (57%), Gaps = 7/174 (4%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I + L++Y++GQ AKK++AVA+ N Y+R + K+ D E+ NI ++GPTG GKT Sbjct 8 PRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKD-EVVPKNILMMGPTGVGKT 66 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 3783 +A+ +A++ PF +AT TE GYVG DVE+++ L++ + + K EK ++E+ Sbjct 67 EIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETS-VRLIKEEK----MNEV 121 Query 3784 DKVARKSENPSITR-DVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 3836 + A ++ N I R V G+ Q + E P G + QE I+ Sbjct 122 KEQAEENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIE 175 > sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU; Length=467 Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 82/126 (65%), Gaps = 1/126 (1%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P+EI + L++Y++GQ AKKS+AVA+ N Y+R+ + +++ N+ +IGPTG GKT Sbjct 8 PKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQ-DITPKNLLMIGPTGVGKT 66 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 3783 +A+ LA+I+N PF +AT TE GYVG DVE+++ L++ A VEK + +Y + Sbjct 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYAQAL 126 Query 3784 DKVARK 3789 K ++ Sbjct 127 KKANQR 132 Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats. Identities = 76/231 (33%), Positives = 113/231 (49%), Gaps = 60/231 (26%) Query 3761 KLIQAADYDVEK----AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 3816 K++ AD E GII+IDEIDK+ KS+ S +VS EGVQ+ +L I+EG+ Sbjct 256 KIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNS--GEVSREGVQRDILPIVEGSQ 313 Query 3817 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLE 3876 + ++ + T +ILFI GAF Sbjct 314 VNT-----------KYGPLQTDHILFIASGAFH--------------------------- 335 Query 3877 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 3936 LSK P DL IPE GR P+ L+ L + V+ILT+P NAL+KQ+ ++ Sbjct 336 ----LSK--PSDL-----IPELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIG 384 Query 3937 LDNVELEFEEEALSEIAKKA--IERKT---GARGLRSIIEGIMLDVMFELP 3982 +NV + F +EA+ +A A + R T GAR L +I+E ++ D+++E P Sbjct 385 TENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAP 435 > sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU; Length=463 Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 118/241 (49%), Gaps = 59/241 (24%) Query 3759 LLKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA 3817 L+ + + V +AE+ GII+IDEIDK+A K N + DVS EGVQ+ +L I+EG+ Sbjct 254 LIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGSNV 310 Query 3818 SVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEK 3877 + ++ + T ILF+ GAF Sbjct 311 AT-----------KYGSVKTDYILFVAAGAFH---------------------------- 331 Query 3878 EDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLEL 3937 +SK P DL IPE GR P+ L KL + V IL +P NAL+KQ+ +L Sbjct 332 ---MSK--PSDL-----IPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLAT 381 Query 3938 DNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVI 3992 + +E+EF +EA+ +IA+ A + GAR L +I+E ++ D+ FE S +EK I Sbjct 382 EGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE-ASEITLEKITI 440 Query 3993 T 3993 T Sbjct 441 T 441 Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats. Identities = 59/165 (36%), Positives = 95/165 (58%), Gaps = 22/165 (13%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I E L++Y+IGQ AKK++AVA+ N Y+R + D E++ NI +IGPTG GKT Sbjct 7 PRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGKT 65 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 3783 +A+ +A+++ PF +AT TE GYVG DVE+++ L++ + V++ + + Sbjct 66 EVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKE--------EMV 117 Query 3784 DKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 3828 KV K+E +QA +++E V S Q G K+P Sbjct 118 VKVQDKAE-------------EQANQRLVEILVPSPEKQSGFKNP 149 > C3F5U0_BACAN ATP-dependent protease ATPase subunit HslU Length=453 Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 118/241 (49%), Gaps = 59/241 (24%) Query 3759 LLKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA 3817 L+ + + V +AE+ GII+IDEIDK+A K N + DVS EGVQ+ +L I+EG+ Sbjct 244 LIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGSNV 300 Query 3818 SVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEK 3877 + ++ + T ILF+ GAF Sbjct 301 AT-----------KYGSVKTDYILFVAAGAFH---------------------------- 321 Query 3878 EDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLEL 3937 +SK P DL IPE GR P+ L KL + V IL +P NAL+KQ+ +L Sbjct 322 ---MSK--PSDL-----IPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLAT 371 Query 3938 DNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVI 3992 + +E+EF +EA+ +IA+ A + GAR L +I+E ++ D+ FE S +EK I Sbjct 372 EGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE-ASEITLEKITI 430 Query 3993 T 3993 T Sbjct 431 T 431 Score = 90.5 bits (223), Expect = 6e-18, Method: Composition-based stats. Identities = 57/160 (36%), Positives = 91/160 (57%), Gaps = 22/160 (14%) Query 3669 EILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQT 3728 E L++Y+IGQ AKK++AVA+ N Y+R + D E++ NI +IGPTG GKT +A+ Sbjct 2 EKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGKTEVARR 60 Query 3729 LARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVAR 3788 +A+++ PF +AT TE GYVG DVE+++ L++ + V++ + + KV Sbjct 61 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKE--------EMVVKVQD 112 Query 3789 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 3828 K+E +QA +++E V S Q G K+P Sbjct 113 KAE-------------EQANQRLVEILVPSPEKQSGFKNP 139 > sp|Q1G9V4|HSLU_LACDA ATP-dependent protease ATPase subunit HslU; Length=464 Score = 99.4 bits (246), Expect = 7e-21, Method: Composition-based stats. Identities = 49/111 (44%), Positives = 75/111 (68%), Gaps = 1/111 (1%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 3723 P++I ++L++Y++GQ++AKKS+A+A+YN Y+R V +++ NI + GPTG GKT Sbjct 6 PKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRTQLPEDVQK-DITPKNILMAGPTGVGKT 64 Query 3724 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAE 3774 +A+ LA I++ PF +AT TE GYVG DVE+++ L A VEK E Sbjct 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEE 115 Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 59/226 (26%) Query 3773 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 3832 + GII+IDEIDK+ + S VS EGVQ+ +L I+EG+ S ++ Sbjct 269 GQSGIIFIDEIDKITAADKRNSA--GVSREGVQRDILPIVEGSTVST-----------KY 315 Query 3833 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 3892 + T +ILFI GAF A++K +D Sbjct 316 GPLSTDHILFIAAGAF-------------------AESKPSD------------------ 338 Query 3893 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 3952 LIPE GR P+ L L ++ V IL P+N+L+KQ+ +L+ D V+L F EA+ +I Sbjct 339 -LIPELQGRFPIRVELNALTKDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKI 397 Query 3953 AKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 3993 A+ A E GAR L +I+E ++ +V++E P D+E IT Sbjct 398 AEIAFEVNQGTDNIGARRLATILEKLLEEVLYEGP---DMEMGQIT 440 > sp|A7X1N1|HSLU_STAA1 ATP-dependent protease ATPase subunit HslU; Length=467 Score = 99.4 bits (246), Expect = 7e-21, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 57/220 (26%) Query 3770 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 3828 +E AE+ GII+IDEIDKVA + N +DVS +GVQ+ +L ILEG+V Sbjct 268 LELAEQMGIIFIDEIDKVATNNHNSG--QDVSRQGVQRDILPILEGSVIQT--------- 316 Query 3829 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 3888 ++ ++T ++LFI GAF +SK P D Sbjct 317 --KYGTVNTEHMLFIGAGAFH-------------------------------VSK--PSD 341 Query 3889 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 3948 L IPE GR P+ L+ L E V ILT+PK +L+KQ++ +L+ + V + F +EA Sbjct 342 L-----IPELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEA 396 Query 3949 LSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPS 3983 ++ +A+ A + GAR L +I+E ++ D+ FE PS Sbjct 397 ITRLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 80/128 (63%), Gaps = 5/128 (4%) Query 3664 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKR--INSNSKVDDVELSKSNISLIGPTGSG 3721 P+EI LNEY++GQ+ AK+ +A+A+ N Y+R ++ SK E+S NI +IGPTG G Sbjct 10 PKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ---EISPKNILMIGPTGVG 66 Query 3722 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYID 3781 KT +A+ +A+++ PF +AT TE GYVG DVE+++ L+ + V+ +K ++ + Sbjct 67 KTEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDE 126 Query 3782 EIDKVARK 3789 K K Sbjct 127 ATAKANEK 134 > tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit; Length=810 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 90/329 (27%), Positives = 151/329 (46%), Gaps = 64/329 (19%) Query 3666 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 3725 ++ EIL+ V+GQD+A K++A AV +R + K D + + +GPTG GKT L Sbjct 501 KLEEILHSRVVGQDEAVKAVAKAV----RRARAGLK--DPKRPIGSFIFLGPTGVGKTEL 554 Query 3726 AQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVE 3771 A+ LA RI + +TS + GYVG + L + ++ Y V Sbjct 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSV- 613 Query 3772 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 3831 + +DE++K +P V LL++LE + GR + Sbjct 614 ------VLLDEMEKA-----HPD---------VFNILLQVLED--GRLTDSKGRTVDFRN 651 Query 3832 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR 3891 I I T+N+ GA +KR K +GF + + + +D+ SKV+ E L+ Sbjct 652 TIIIMTSNV-----GA-----DALKR---NKYVGFNIQD--GNQQYKDMKSKVMDE--LK 694 Query 3892 FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 3951 PEF+ R+ I L+++ L I+ + LVK+ K+ +++LE E A+ + Sbjct 695 KAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKRLKE----QDIDLELTEAAIEK 750 Query 3952 IAKKAIERKTGARGLRSIIEGIMLDVMFE 3980 IA + + + GAR LR ++ + D + E Sbjct 751 IAAEGFDPEYGARPLRRALQKHVEDRLSE 779 > tr|Q97N72|Q97N72_STRPN ATP-dependent Clp protease, ATP-binding subunit; Length=810 Score = 65.5 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 93/358 (26%), Positives = 156/358 (44%), Gaps = 74/358 (21%) Query 3660 DVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTG 3719 D K + L++ VIGQDQA S++ A+ + I S+ + + +GPTG Sbjct 499 DAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKR------PIGSFMFLGPTG 552 Query 3720 SGKTLLAQTLARILN------VPFAIAD------ATSLTEA--GYVGEDVENILLKLIQA 3765 GKT LA+ LA +L + F +++ A+ L A GYVG + L + ++ Sbjct 553 VGKTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRN 612 Query 3766 ADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR 3825 Y V + DE++K +P I LL++L+ V + GR Sbjct 613 KPYSV-------LLFDEVEKA-----HPDIF---------NVLLQVLDDGVLT--DSKGR 649 Query 3826 KHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVL 3885 K I I T+N+ GA K +GFGA K ++E++ ++ Sbjct 650 KVDFSNTIIIMTSNL-----GA--------TALRDDKTVGFGA--KDIRFDQENMEKRMF 694 Query 3886 PEDLLRFGLIPEFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVEL 3942 E L+ PEFI R+ V SL + +V I+ KP A + + ++L Sbjct 695 EE--LKKAYRPEFINRIDEKVVFHSLSSDHMQEVVKIMVKPLVASLTE-------KGIDL 745 Query 3943 EFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHG 4000 + + AL +A + + + GAR LR ++ + D + EL + D+ + G+T+ G Sbjct 746 KLQASALKLLANQGYDPEMGARPLRRTLQTEVEDKLAELLLKGDL----VAGSTLKIG 799 > B0AY46_BACAN Negative regulator of genetic competence ClpC/MecB Length=811 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 92/337 (27%), Positives = 149/337 (44%), Gaps = 64/337 (19%) Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 + IL++ VIGQD+A ++A + + + D + + +GPTG GKT LA Sbjct 503 LESILHDRVIGQDEAVVAVAK------AVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 556 Query 3727 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 3772 + LA RI + +TS + GYVG + L + ++ Y V Sbjct 557 RALAESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSV-- 614 Query 3773 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 3832 + +DE++K +P V LL++LE + GR + Sbjct 615 -----VLLDEVEKA-----HPD---------VFNILLQVLED--GRLTDSKGRTVDFRNT 653 Query 3833 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 3892 I I T+N+ GA + +KR K +GF +++ D D+ KV+ E L+ Sbjct 654 IVIMTSNV-----GA-----EALKR---NKHLGFNVQDESRDYS--DMKGKVMDE--LKK 696 Query 3893 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 3952 PEF+ R+ I L+++ + I+T N LV + K+ +EL E A+S I Sbjct 697 AFRPEFLNRIDEIIVFHMLEKKHIQEIVTLMVNQLVNRLKE----QEIELHLTEGAISAI 752 Query 3953 AKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 3989 A K +R+ GAR LR I+ + D + E + IEK Sbjct 753 ADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEK 789 > tr|Q890L5|Q890L5_CLOTE Negative regulator of genetic competence mecB/clpC; Length=811 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 144/345 (42%), Gaps = 62/345 (18%) Query 3659 KDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPT 3718 K+ + ++ E L+ VIGQ++A KS++ AV + + D + +GPT Sbjct 497 KESERLLKLEETLHNRVIGQNEAVKSVSRAVRR------ARVGLKDPNRPIGSFIFLGPT 550 Query 3719 GSGKTLLAQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQ 3764 G GKT L++ LA RI + A S + GYVG D L + ++ Sbjct 551 GVGKTELSKALAEAMFGDESSMIRIDMSEYMEKHAVSRLIGSPPGYVGYDEGGQLTEKVR 610 Query 3765 AADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 3824 Y V I DEI+K +P V LL+ILE + G Sbjct 611 RHPYSV-------ILFDEIEKA-----HPD---------VFNILLQILED--GRLTDGKG 647 Query 3825 RKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKV 3884 + + I I T+N+ G I K QK +GF + + E E + V Sbjct 648 KTVNFKNTIIIMTSNV---------GASTIKK----QKSLGFAISDDKIESEYEQMKENV 694 Query 3885 LPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEF 3944 + E L+ PEF+ R+ I KL EE L I+ +++ L+ ++ + F Sbjct 695 MEE--LKRSFRPEFLNRIDDIIVFHKLREEDLEKIVA----LMLESVTHRLKNQDINISF 748 Query 3945 EEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 3989 ++++ +AKK + GAR LR I + D + E + IEK Sbjct 749 DKKSQKFLAKKGFDPVYGARPLRRAITKAVEDKLSEEILKGSIEK 793 > sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB; Length=810 Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 87/337 (26%), Positives = 150/337 (45%), Gaps = 64/337 (19%) Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 + IL+ VIGQD+A ++A + + + D + + +GPTG GKT LA Sbjct 502 MENILHSRVIGQDEAVVAVAK------AVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 3727 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 3772 + LA RI + +TS + GYVG D L + ++ Y V Sbjct 556 RALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSV-- 613 Query 3773 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 3832 + +DEI+K +P V LL++LE + GR + Sbjct 614 -----VLLDEIEKA-----HPD---------VFNILLQVLED--GRLTDSKGRTVDFRNT 652 Query 3833 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 3892 I I T+N+ GA + +KR K +GF ++ + +D+ KV+ E L+ Sbjct 653 ILIMTSNV-----GASE-----LKR---NKYVGFNVQDETQN--HKDMKDKVMGE--LKR 695 Query 3893 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 3952 PEFI R+ I L+++ L I++ + L K+ K+ ++ +E + A +++ Sbjct 696 AFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKE----QDLSIELTDAAKAKV 751 Query 3953 AKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 3989 A++ ++ + GAR LR I+ + D + E R +I K Sbjct 752 AEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHK 788 > sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE; Length=699 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 92/360 (26%), Positives = 150/360 (42%), Gaps = 77/360 (21%) Query 3640 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 3698 E EIVE++ G +++ + K +E+ L+E VIGQ+ A + +A AV + S Sbjct 375 EHIQEIVEQKTGIPVGKLQADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKS 434 Query 3699 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 3747 ++ + +GPTG GKT L++TLA L F DA ++E Sbjct 435 KNR------PVGSFLFVGPTGVGKTELSKTLADEL---FGTKDAIIRLDMSEYMEKHAVS 485 Query 3748 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 3801 GYVG + L + ++ Y I+ +DEI+K +P Sbjct 486 KIIGSPPGYVGHEEAGQLTEKVRRNPYS-------IVLLDEIEKA-----HPD------- 526 Query 3802 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 3861 VQ L+I+E + GR ++ + I T+N GA + Q Sbjct 527 --VQHMFLQIMED--GRLTDSQGRTVSFKDTVIIMTSN-----AGAGE----------KQ 567 Query 3862 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 3921 +GF +D+ +E++ L+ D L PEF+ R I L++E LV I++ Sbjct 568 TKVGFQSDDSV--IEEQTLI------DSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVS 619 Query 3922 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFEL 3981 L + + + L +EA +IA+ GAR LR I+ + D M +L Sbjct 620 LLLGELEETLAER----GISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDL 675 > tr|A2RIW9|A2RIW9_LACLM ATP-dependent Clp protease ATP-binding subunit; Length=816 Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 85/327 (26%), Positives = 141/327 (43%), Gaps = 70/327 (21%) Query 3671 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 3730 L++ V+GQ++A +++ A+ + S V D + +GPTG GKT LA+ LA Sbjct 515 LHKRVVGQEEAISAVSRAIRR------ARSGVADSRRPMGSFMFLGPTGVGKTELAKALA 568 Query 3731 -----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEKG 3776 R+ F +TS GYVG D L + ++ Y V Sbjct 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSV------ 622 Query 3777 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 3836 + +DE++K N +L+IL+ V GRK + I I Sbjct 623 -VLLDEVEKAHLDVFN--------------IMLQILDD--GFVTDTKGRKVDFRNTIIIM 665 Query 3837 TTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIP 3896 T+N+ GA K +GFGA N AD + S++L E L+ P Sbjct 666 TSNL-----GA--------TALRDDKTVGFGAKNITADYSA--MQSRILEE--LKRHYRP 708 Query 3897 EFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 3953 EF+ R+ V SLE + E +V I++K +L+K+ + ++ ++ A+ IA Sbjct 709 EFLNRIDENIVFHSLESQEIEQIVKIMSK---SLIKRLAE----QDIHVKLTPSAIKLIA 761 Query 3954 KKAIERKTGARGLRSIIEGIMLDVMFE 3980 + + + GAR LR ++ + D++ E Sbjct 762 EVGFDPEYGARPLRKALQKEVEDLLSE 788 > tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C; Length=820 Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 90/339 (27%), Positives = 149/339 (44%), Gaps = 70/339 (21%) Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 + ++L+E VIGQD A K++++AV +R + K D + + +GPTG GKT LA Sbjct 501 MEKLLHERVIGQDAAVKAVSLAV----RRARAGLK--DPKRPIGSFIFLGPTGVGKTELA 554 Query 3727 QTLARILNVPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYD 3769 + LA + F D+ ++E GYVG + L + ++ Y Sbjct 555 RALAESM---FGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYS 611 Query 3770 VEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPH 3829 V + +DEI+K +P V LL++L+ + GR Sbjct 612 V-------VLLDEIEKA-----HPD---------VFNMLLQVLDD--GRLTDSKGRVVDF 648 Query 3830 QEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDL 3889 + + I T+NI GA Q +K+ K +GF + D + + +VL + Sbjct 649 RNTVIIMTSNI-----GA-----QEMKQ---DKSMGFNVTDPLKD--HKAMEHRVLQD-- 691 Query 3890 LRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEAL 3949 L+ PEFI R+ L E+ L I+T L Q K L ++ ++ E A Sbjct 692 LKQAFRPEFINRIDETIVFHSLQEKELKQIVT----LLTAQLTKRLAERDIHVKLTEGAK 747 Query 3950 SEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIE 3988 S+IAK + + GAR L+ I+ + D++ E R +I+ Sbjct 748 SKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIK 786 > tr|A7WYU0|A7WYU0_STAA1 Endopeptidase; Length=818 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 85/329 (26%), Positives = 136/329 (41%), Gaps = 64/329 (19%) Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 + + L+E VIGQ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHERVIGQKDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 3727 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 3772 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 3773 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 3832 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 3833 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 3892 I I T+N+ G +++ +R GFG + D E + +L E L+ Sbjct 653 IIIMTSNV---------GAQELQDQRFA----GFGGSSDGQDYET--IRKTMLKE--LKN 695 Query 3893 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 3952 PEF+ R+ I KL +E L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKEELKEIVT----MMVNKLTNRLSEQNINIIVTDKAKDKI 751 Query 3953 AKKAIERKTGARGLRSIIEGIMLDVMFEL 3981 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTIEDNLSEL 780 > tr|Q1G869|Q1G869_LACDA ATP-dependent Clp protease, ATP-binding subunit; Length=696 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 95/410 (23%), Positives = 157/410 (38%), Gaps = 103/410 (25%) Query 3578 AINREFFTAAASQSEQUENCEAAMFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDE 3637 A +E + AA + E E + + +EE RK VA P Sbjct 339 AAEKEDYQAALDHKAKAEKLEKQLSENHEE----------------RKTVATPADVAA-- 380 Query 3638 CIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRIN 3697 +E T I ++G D+ + + + L +IGQD+A +++A A+ Sbjct 381 AVERLTGIPVSKMGAS------DIERLKGLSSRLKGKIIGQDEAVEAVAKAIRR------ 428 Query 3698 SNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA--------RILNVPFA-IADATSL--- 3745 + + D+ + +GPTG GKT LA+ LA I+ + + +D T++ Sbjct 429 NRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSKL 488 Query 3746 --TEAGYVG-EDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGE 3802 T AGYVG +D N L + ++ Y II +DEI+K +P + Sbjct 489 IGTTAGYVGYDDNSNTLTEKVRRNPYS-------IILLDEIEKA-----DPQVI------ 530 Query 3803 GVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQK 3862 LL++L+ + G + I I T+N Sbjct 531 ---TLLLQVLDD--GRLTDGQGNTVNFKNTIIIATSN----------------------- 562 Query 3863 VIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 3921 GFG + D +K E L+ ++ P PEF+ R + L +E L I+ Sbjct 563 -AGFGNEQLMGDAKKDEKLMDRLAPY------FRPEFLNRFNAVIEFSHLTKEDLKEIV- 614 Query 3922 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 3971 N ++ K L + L E A + ++ + GAR LR +IE Sbjct 615 ---NLMLADVNKTLAKKGISLTVSESAKDYLIEQGYDEAMGARPLRRVIE 661 > tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease; Length=724 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 87/352 (25%), Positives = 145/352 (41%), Gaps = 75/352 (21%) Query 3645 IVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVD 3703 I+EE+ G ++ + K + + L VIGQ+ A K +A A+ R+ SK Sbjct 399 IIEEKTGIPVGRLQEDEQSKMKNLERNLTGKVIGQEDAVKKVAKAI--RRSRVGLKSKNR 456 Query 3704 DVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE------------- 3747 + + +GPTG GKT L +TLAR L F ++A ++E Sbjct 457 PI----GSFLFVGPTGVGKTELGRTLAREL---FGTSEAMIRLDMSEFMEKHSISKLIGS 509 Query 3748 -AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQ 3806 GYVG + L + ++ Y II +DEI+K +P VQ Sbjct 510 PPGYVGHEEAGQLTEKVRRNPYS-------IILLDEIEKA-----HPD---------VQH 548 Query 3807 ALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGF 3866 L+ILE + GR ++ + I T+N GA D + +GF Sbjct 549 MFLQILED--GRLTDSQGRTVSFKDTVIIMTSN-----AGATD----------TEASVGF 591 Query 3867 GADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNA 3926 + + D+L+K L PEF+ RL + + L+++ LV I+ + Sbjct 592 NTTTETKLEKGSDILAK------LGAYFKPEFLNRLDSVIEFKSLEKDDLVQII----DL 641 Query 3927 LVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVM 3978 ++ +ML + V ++ +E + + K GAR LR I+ + D + Sbjct 642 MLVDLNEMLAQEGVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDTI 693 > tr|Q899V4|Q899V4_CLOTE Negative regulator of genetic competence mecB; Length=767 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 88/355 (25%), Positives = 149/355 (42%), Gaps = 81/355 (23%) Query 3654 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 3713 ++V K+ K + + L++ +IGQD+A + L+ + + R+ SK ++ Sbjct 457 QKVREKEAEKLLNLEQRLHKRLIGQDKAVRKLSRTIRRN--RLGFKSKK-----RPASFI 509 Query 3714 LIGPTGSGKTLLAQTLARILNVPFAIADATSL-------------------TEAGYVGED 3754 +GPTG GKT L ++LA L D SL + GYVG D Sbjct 510 FVGPTGVGKTELVRSLACEL-----FGDEDSLIRIDMSEYMEKHTASKLIGSPPGYVGYD 564 Query 3755 VENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEG 3814 L + I+ Y V + +DEI+K +P I LL++LE Sbjct 565 EGGQLTEKIRRKPYSV-------VLLDEIEKA-----HPDIF---------NMLLQVLED 603 Query 3815 TVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAAD 3874 + GR + I T+N+ G F + IGFG N Sbjct 604 --GRLTDNQGRTVFFDNSVIIMTSNL----GTNFK-----------ESSIGFGNTNS--- 643 Query 3875 LEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKM 3934 ++ E+ + +D L+ PEFI R+ I EKL++E L I+ + + + + Sbjct 644 IQIENSI-----KDALKETFKPEFINRIDEIVIFEKLNKEELYDII----DIMFDEVSED 694 Query 3935 LELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 3989 L N+++ F +E I K + K GAR L+ I+ + D + E R+++++ Sbjct 695 LSEKNIKVHFTKEVKDFILKVGYDEKYGARELKRAIQRYIEDEISEQYFRNEVKE 749 > tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH; Length=628 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 13/142 (9%) Query 3675 VIGQDQAKKSL--AVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 3732 V GQ++AK +L V + KR N V L K + L+GP G+GKTLLAQ +A Sbjct 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGAV----LPKG-VLLVGPPGTGKTLLAQAVAGE 219 Query 3733 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 3792 VPF + E +VG + QAAD I++IDEID + ++ + Sbjct 220 AKVPFFSMSGSEFVEM-FVGLGASKVRDLFKQAAD-----KAPCIVFIDEIDAIGKRRDT 273 Query 3793 PSITRDVSGEGVQQALLKILEG 3814 I+ + E LL ++G Sbjct 274 AGISGNDEREQTLNQLLNEMDG 295 > tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding subunit ClpC; Length=806 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 135/316 (43%), Gaps = 66/316 (21%) Query 3671 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 3730 L + VIGQD+A S++ A+ KR K + + + +GPTG GKT LA+ LA Sbjct 495 LKKVVIGQDKAIDSISNAI----KRARVGLKNPNKPIG--SFVFVGPTGVGKTYLAKKLA 548 Query 3731 RIL----NVPFAIADATSLTEA-----------GYVGEDVENILLKLIQAADYDVEKAEK 3775 + L N I D T E GYVG D L +++ Y V Sbjct 549 KELFNDENAMIRI-DMTEYMEKHSVSKLIGSPPGYVGHDDGGQLTDMVRTKPYSV----- 602 Query 3776 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 3835 I DEI+K +P V LL++L+ + GR ++ + I Sbjct 603 --ILFDEIEKA-----HPD---------VFNTLLQVLDD--GRLTDSKGRVVNFKDTVII 644 Query 3836 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDL-LSKVLPEDLLRFGL 3894 T+NI G ++ + VIGF N A D+E ++ +K + ++ Sbjct 645 MTSNI---------GASELESK----NVIGF---NTAEDVEVDEYNRNKETINNAMKSMF 688 Query 3895 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 3954 PEF+ RL + L++E + I + LV + K +++ + ++E+ L + Sbjct 689 KPEFMNRLDDVIVFSNLNKENVKEIAGLMMDELVDRMAK----NDLIISYDEKILDYLVD 744 Query 3955 KAIERKTGARGLRSII 3970 K ++K GAR L +I Sbjct 745 KGYDKKFGARPLERLI 760 > sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC; Length=817 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 81/329 (25%), Positives = 140/329 (43%), Gaps = 64/329 (19%) Query 3667 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 3726 + + L++ VIGQ+ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHKRVIGQNDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 3727 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 3772 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 3773 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 3832 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 3833 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 3892 + I T+N+ G +++ +R GFG ++ +D E + K + ++ L+ Sbjct 653 VIIMTSNV---------GAQELQDQRFA----GFGGASEGSDYET---VRKTMMKE-LKN 695 Query 3893 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 3952 PEF+ R+ I KL ++ L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKDELKEIVT----MMVNKLTHRLSEQNINIVVTDKAKEKI 751 Query 3953 AKKAIERKTGARGLRSIIEGIMLDVMFEL 3981 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTVEDNLSEL 780 > tr|A7FZ97|A7FZ97_CLOB1 Putative negative regulator of genetic competence MecB/ClpC; Length=811 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 145/346 (42%), Gaps = 63/346 (18%) Query 3659 KDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPT 3718 K+ + ++ IL+ VIGQ++A KS++ +V + + D + + +GPT Sbjct 496 KESERLLKLENILHNRVIGQEEAIKSVSRSVRR------ARVGLKDPKRPIGSFIFLGPT 549 Query 3719 GSGKTLLAQTLARIL--NVPFAI-ADATSLTEA-----------GYVGEDVENILLKLIQ 3764 G GKT L + LA + N I D + E GYVG D L ++ Sbjct 550 GVGKTELTKALAEAMFGNENNMIRVDMSEYMEKHSVSRLIGSPPGYVGHDEGGQLTDKVR 609 Query 3765 AADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 3824 Y V + DEI+K + N LL+ILE + G Sbjct 610 TNPYSV-------VLFDEIEKAHPEVFN--------------ILLQILED--GRLTDGKG 646 Query 3825 RKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAD-NKAADLEKEDLLSK 3883 + + I I T+N+ GA I R QK +GF + + E E + Sbjct 647 KTVDFRNTIIIMTSNV-----GA-----STISR---QKTLGFNTSIEEERETEYEKMKDN 693 Query 3884 VLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELE 3943 ++ E L+ PEF+ R+ I +L EE + I+ ++K ++ ++LE Sbjct 694 IMNE--LKHSFRPEFLNRIDDIIVFHQLREEHIREIV----KLMLKTVSNRVKDQGIKLE 747 Query 3944 FEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 3989 F EEA +AK+ + GAR LR I I+ D + E + +I+K Sbjct 748 FTEEAEKILAKEGYDTNYGARPLRRAITKIVEDKLSEEILKGNIKK 793 > tr|Q99XR9|Q99XR9_STRP1 Negative regulator of genetic competence; Length=814 Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 85/345 (25%), Positives = 144/345 (42%), Gaps = 70/345 (20%) Query 3654 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 3713 E++ D K + + L++ VIGQD A +++ A+ + I + + + Sbjct 497 EKLTQADSKKYLNLEKELHKRVIGQDAAVTAISRAIRRNQSGIRTGKR------PIGSFM 550 Query 3714 LIGPTGSGKTLLAQTLARILN------VPFAIAD------ATSLTEA--GYVGEDVENIL 3759 +GPTG GKT LA+ LA +L + F +++ A+ L A GYVG D L Sbjct 551 FLGPTGVGKTELAKALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGEL 610 Query 3760 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 3819 + ++ Y V + DE++K +P I LL++L+ + + Sbjct 611 TQKVRNKPYSV-------LLFDEVEKA-----HPDIF---------NVLLQVLDDGILT- 648 Query 3820 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 3879 GRK I I T+N+ GA K +GFG + D + Sbjct 649 -DSRGRKVDFSNTIIIMTSNL-----GA--------TALRDDKTVGFGVKDIHQD--HQA 692 Query 3880 LLSKVLPEDLLRFGLIPEFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLE 3936 + ++L E LR PEFI R+ V SL + + +V I+ +P L Sbjct 693 MEKRILEE--LRKTYRPEFINRIDEKVVFHSLTQDNMRDVVKIMVQP-------LITTLA 743 Query 3937 LDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFEL 3981 + L+ + AL +++ + GAR LR ++ + D + EL Sbjct 744 EKGITLKIQPLALKHLSEVGYDEHMGARPLRRTLQTEIEDKLSEL 788 > tr|J7MBF9|J7MBF9_STRP1 Negative regulator of genetic competence; Length=814 Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 85/345 (25%), Positives = 144/345 (42%), Gaps = 70/345 (20%) Query 3654 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 3713 E++ D K + + L++ VIGQD A +++ A+ + I + + + Sbjct 497 EKLTQADSKKYLNLEKELHKRVIGQDAAVTAISRAIRRNQSGIRTGKR------PIGSFM 550 Query 3714 LIGPTGSGKTLLAQTLARILN------VPFAIAD------ATSLTEA--GYVGEDVENIL 3759 +GPTG GKT LA+ LA +L + F +++ A+ L A GYVG D L Sbjct 551 FLGPTGVGKTELAKALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGEL 610 Query 3760 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 3819 + ++ Y V + DE++K +P I LL++L+ + + Sbjct 611 TQKVRNKPYSV-------LLFDEVEKA-----HPDIF---------NVLLQVLDDGILT- 648 Query 3820 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 3879 GRK I I T+N+ GA K +GFG + D + Sbjct 649 -DSRGRKVDFSNTIIIMTSNL-----GA--------TALRDDKTVGFGVKDIHQD--HQA 692 Query 3880 LLSKVLPEDLLRFGLIPEFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLE 3936 + ++L E LR PEFI R+ V SL + + +V I+ +P L Sbjct 693 MEKRILEE--LRKTYRPEFINRIDEKVVFHSLTQDNMRDVVKIMVQP-------LITTLA 743 Query 3937 LDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFEL 3981 + L+ + AL +++ + GAR LR ++ + D + EL Sbjct 744 EKGITLKIQPLALKHLSEVGYDEHMGARPLRRTLQTEIEDKLSEL 788 > tr|A7FYT8|A7FYT8_CLOB1 ATP-dependent zinc metalloprotease FtsH; Length=658 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 72/139 (52%), Gaps = 9/139 (6%) Query 3673 EYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 3732 E V GQD+AK+SL V + + + +++ +L K + L+GP G+GKTLLA+ +A Sbjct 165 EDVAGQDEAKESL-VEIVDFLHKPERYTEIG-AKLPKGAL-LVGPPGTGKTLLAKAVAGE 221 Query 3733 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 3792 VPF +S E +VG + QA EKA II+IDEID + + +N Sbjct 222 AKVPFFSLSGSSFVEM-FVGMGAARVRDLFEQAQ----EKA-PCIIFIDEIDAIGKSRDN 275 Query 3793 PSITRDVSGEGVQQALLKI 3811 + D + + Q L ++ Sbjct 276 AMSSNDEREQTLNQLLAEM 294 > tr|Q82YZ7|Q82YZ7_ENTFA ATP-dependent Clp protease, ATP-binding subunit ClpC; Length=831 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 149/341 (44%), Gaps = 64/341 (19%) Query 3654 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 3713 +++E K+ + E+ IL++ V+GQ++A ++++ A+ +R S K D + Sbjct 499 QQLEKKESERLMELETILHQRVVGQNEAVEAVSRAI----RRARSGLK--DPARPIGSFM 552 Query 3714 LIGPTGSGKTLLAQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENIL 3759 +GPTG GKT LA+ LA R+ F +TS + GYVG + L Sbjct 553 FLGPTGVGKTELAKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQL 612 Query 3760 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 3819 + I+ Y V I +DE++K +P V LL++L+ + Sbjct 613 TEKIRQRPYSV-------ILLDEVEKA-----HPD---------VFNILLQVLDD--GHL 649 Query 3820 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 3879 GRK + I I T+N+ G I + +K +GF + + + E Sbjct 650 TDAKGRKVDFRNTILIMTSNL---------GATAIRE----EKHVGFNVKDISKNHE--- 693 Query 3880 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 3939 L+ K + E+L + PEF+ R+ L +E + I+ ++VK+ + Sbjct 694 LMQKRIMEELKK-AFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSVVKRMAE----QE 748 Query 3940 VELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFE 3980 V+++ A+ I K + + GAR +R ++ + D + E Sbjct 749 VKVKITPAAIEVIGKVGFDPEYGARPIRRALQKEVEDRLSE 789 > tr|Q97SK0|Q97SK0_STRPN Putative ATP-dependent Clp protease, ATP-binding subunit; Length=701 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 97/428 (23%), Positives = 172/428 (40%), Gaps = 94/428 (22%) Query 3563 TAAAFTCONFLICTGAINREFFTAAASQSE--QUENCEAAMFKFNEEKGQLKCSFCGKTQ 3620 TAA + + A+ RE T Q + + E+ EAA+ + +L+ T+ Sbjct 314 TAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAAL-NYKTRIAELERKIENHTE 372 Query 3621 DQVRKLVAGPGVYICDECIELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQD 3679 D K+ A + E VE G ++E D+ + +++ L + VIGQD Sbjct 373 DM--KVTAS---------VNDVAESVERMTGIPVSQMEASDIERLKDMAHRLQDKVIGQD 421 Query 3680 QAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA--------R 3731 +A + +A A+ + + D+ N +G TG GKT LA+ LA Sbjct 422 KAVEVVARAIR------RNRAGFDEGNRPIGNFLFVGSTGVGKTELAKQLALDMFGTQDA 475 Query 3732 ILNVPFA-IADATSL-----TEAGYVG-EDVENILLKLIQAADYDVEKAEKGIIYIDEID 3784 I+ + + +D T++ T AGYVG +D N L + ++ Y II +DEI+ Sbjct 476 IIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYS-------IILLDEIE 528 Query 3785 KVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIC 3844 K +P + LL++L+ + G + + I T+N Sbjct 529 KA-----DPQVI---------TLLLQVLDD--GRLTDGQGNTVNFKNTVIIATSN----- 567 Query 3845 GGAFDGIEQIIKRRLGQKVIGFGAD-NKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLP 3903 GFG + N D +K +L+ ++ P R PEF+ R Sbjct 568 -------------------AGFGYEANLTEDADKPELMDRLKP--FFR----PEFLNRFN 602 Query 3904 VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGA 3963 + L +E L I+ + ++ + + L +++L + A I ++ + G Sbjct 603 AVIEFSHLTKEDLSKIV----DLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGV 658 Query 3964 RGLRSIIE 3971 R LR ++E Sbjct 659 RPLRRVVE 666 > tr|Q5FM98|Q5FM98_LACAC ATPase; Length=825 Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 143/327 (44%), Gaps = 67/327 (20%) Query 3670 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 3729 IL++ VIGQD+A ++A A+ S S + D + +GPTG GKT LA+++ Sbjct 515 ILHKRVIGQDKAVSAVARAIRR------SRSGIKDERRPIGSFLFLGPTGVGKTELAKSV 568 Query 3730 A--------RILNVPFA-----IADATSLTEA-GYVGEDVENILLKLIQAADYDVEKAEK 3775 A ++ + + IA + + A GYVG + L + ++ Y V Sbjct 569 AAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSV----- 623 Query 3776 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHPHQEFIQ 3834 + +DE++K +P V LL++L EG + GRK + I Sbjct 624 --VLLDEVEKA-----HPD---------VFNLLLQVLDEGFMTD---SKGRKVDFRNTII 664 Query 3835 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 3894 I T+N+ FDG +GF AD +++ + + + + +F Sbjct 665 IMTSNLG--SRSLFDG-----------NAVGFNADK----IDQAKVRQAKVQQAIKQF-F 706 Query 3895 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 3954 PEF+ R+ ++L ++ L I++ N LV + ++ + L+ AL +I + Sbjct 707 RPEFLNRIDETIVFDELTKKQLRNIVSLLTNKLVVRLQR----KGITLKLSRAALDKIVQ 762 Query 3955 KAIERKTGARGLRSIIEGIMLDVMFEL 3981 + + GAR L+ I+ + D + E+ Sbjct 763 DGYDPENGARPLKRAIQNDVEDKVAEM 789 > tr|Q1GBM8|Q1GBM8_LACDA ATP-dependent Clp protease, ATP-binding subunit; Length=819 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 87/349 (25%), Positives = 141/349 (40%), Gaps = 77/349 (22%) Query 3670 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 3729 IL+E VIGQD A K++A A+ S S + D + +GPTG GKT LA+ + Sbjct 509 ILHERVIGQDDAVKAVANAIRR------SRSGLKDENRPIGSFLFLGPTGVGKTELAKAV 562 Query 3730 A-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEK 3775 A R+ + +++S + GYVG + L ++ Y V Sbjct 563 AEAVFGSEDNIIRVDMSEYMDRESSSKLIGSAPGYVGYEEGGQLSNKVREHPYSV----- 617 Query 3776 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHPHQEFIQ 3834 + DE++K NP I LL++L EG + GRK + I Sbjct 618 --VLFDEVEKA-----NPEIF---------NVLLRVLDEGFMTD---SLGRKVDFRNTII 658 Query 3835 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG- 3893 I T+N LG + AD+ ++ K++ E + R Sbjct 659 IMTSN-------------------LGSR--SLEADSHVGFSASQEDQGKLIAEKVTRATK 697 Query 3894 --LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 3951 PEF+ R+ + L+ + L I+T L ++ K L ++ L AL + Sbjct 698 DFFRPEFLNRIDEKIVFKPLEAKQLRKIVT----LLTRKLVKRLAEKDITLRLSPAALDQ 753 Query 3952 IAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHG 4000 +AK + GAR LR I+ + D + ++D + + + G TV G Sbjct 754 LAKDGYNPEMGARPLRRTIQDEVEDEL----AQDLVSEKLQAGDTVKIG 798 > tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH; Length=659 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 23/132 (17%) Query 3655 EVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISL 3714 +V F DV +E ++ L E V KK YK + + + + L Sbjct 183 KVRFTDVAGAEEEKQELVEVVDFLKNPKK---------YKSLGARIP--------AGVLL 225 Query 3715 IGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAE 3774 GP G+GKTLLA+ +A VPF + E +VG + ++ D +KAE Sbjct 226 EGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-----RSLFEDAKKAE 279 Query 3775 KGIIYIDEIDKV 3786 + II+IDEID V Sbjct 280 RAIIFIDEIDAV 291 > tr|J7M6I1|J7M6I1_STRP1 ATP-dependent zinc metalloprotease FtsH; Length=641 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 23/132 (17%) Query 3655 EVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISL 3714 +V F DV +E ++ L E V KK YK + + + + L Sbjct 165 KVRFTDVAGAEEEKQELVEVVDFLKNPKK---------YKSLGARIP--------AGVLL 207 Query 3715 IGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAE 3774 GP G+GKTLLA+ +A VPF + E +VG + ++ D +KAE Sbjct 208 EGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-----RSLFEDAKKAE 261 Query 3775 KGIIYIDEIDKV 3786 + II+IDEID V Sbjct 262 RAIIFIDEIDAV 273 > tr|Q891B9|Q891B9_CLOTE ATP-dependent zinc metalloprotease FtsH; Length=624 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 47/143 (33%), Positives = 68/143 (48%), Gaps = 16/143 (11%) Query 3675 VIGQDQAKKSLAVAV---YNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLAR 3731 V GQ++AK+SL V +N K +K+ L L+GP G+GKTLLA+ +A Sbjct 173 VAGQEEAKESLMEIVDFLHNSDKYTGIGAKLPKGAL------LVGPPGTGKTLLAKAVAG 226 Query 3732 ILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSE 3791 VPF + E +VG + QA EKA II+IDEID + KS Sbjct 227 EAKVPFFSISGSGFVEM-FVGMGAARVRDLFEQAQ----EKA-PCIIFIDEIDAIG-KSR 279 Query 3792 NPSITRDVSGEGVQQALLKILEG 3814 + ++ + E LL ++G Sbjct 280 DGHVSGNDEREQTLNQLLAEMDG 302 > tr|Q899H3|Q899H3_CLOTE ATP-dependent zinc metalloprotease FtsH; Length=603 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 3712 ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE 3771 + L+GP G+GKTLLA+ +A VPF + E +VG + QA + Sbjct 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFDQA-----K 250 Query 3772 KAEKGIIYIDEIDKVARK 3789 K + II+IDEID V R+ Sbjct 251 KNSRCIIFIDEIDAVGRQ 268 > tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding subunit; Length=728 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 77/350 (22%) Query 3640 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 3698 ++ +IVEE+ G +++ ++ + Q + L VIGQD+A + +A A+ + RI Sbjct 401 KIMNKIVEEKTGIPVGDIQKQEENQLQNLASDLKSNVIGQDKAVEKVARAIRRN--RIGF 458 Query 3699 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 3747 N + + +GPTG GKT LA+ LA+ + F DA ++E Sbjct 459 NKSGRPI----GSFLFVGPTGVGKTELAKQLAKQM---FGSEDAMIRFDMSEYMEQYSVS 511 Query 3748 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 3801 GYVG + L + ++ Y +I +DEI+K +P Sbjct 512 KLIGSAPGYVGYEEAGQLTEQVRHNPYS-------LILLDEIEKA-----HPD------- 552 Query 3802 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 3861 V L+IL+ + GR ++ I I T+N A GI+ Sbjct 553 --VLNLFLQILDD--GRLTDSQGRTVSFKDTIIIMTSN-------AGQGIK--------N 593 Query 3862 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 3921 +GF A+N +D S+ ++ +F PEF+ RL + +L + L+ I+ Sbjct 594 ASVGFTAEN-------DDESSESARNNMSQF-FKPEFLNRLDDVIEFNELTKPDLLEIV- 644 Query 3922 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 3971 + +++ M++ + ++ A +++ ++ GAR LR I+ Sbjct 645 ---DLMLQNTNNMVKDQGLHIDVTSAAKNKLVEEGFNPALGARPLRRTIQ 691 > sp|O69076|FTSH_STRPN ATP-dependent zinc metalloprotease FtsH; Length=652 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 42/80 (53%), Gaps = 6/80 (8%) Query 3710 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 3769 + + L GP G+GKTLLA+ +A VPF + E +VG +++ D Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-----VRSLFED 274 Query 3770 VEKAEKGIIYIDEIDKVARK 3789 +KA II+IDEID V R+ Sbjct 275 AKKAAPAIIFIDEIDAVGRQ 294 > sp|Q898C7|CLPB_CLOTE Chaperone protein ClpB; Length=865 Score = 45.8 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 101/439 (23%), Positives = 178/439 (41%), Gaps = 109/439 (25%) Query 3580 NREFFTAAASQSEQUENCEAAMFKFNEEKGQLKCSFCGKTQDQVRKLVAG--PGVYICDE 3637 ++E + EQ N K +E KGQL+ + ++V +L G PG+ E Sbjct 459 DKEMTAKYEKEKEQIINMRNLKQKLDEVKGQLEKAEREYDLNKVAELKYGIIPGIKSQIE 518 Query 3638 CIELCTE------IVEEELGTEEEV-----EFKDVP----------KPQEIREILNEYVI 3676 E+ + +++EE+ TE E+ + +P K + + L VI Sbjct 519 EKEILIKENSQGNMLKEEV-TENEISKIISHWTGIPVTKLIEGEKDKLLRLEDELKSRVI 577 Query 3677 GQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLAR----- 3731 GQD+A ++++ AV + + + + D + + +GPTG GKT LA+TL + Sbjct 578 GQDEAVEAVSNAV------LRARAGMKDPQKPIGSFIFLGPTGVGKTELAKTLCKNLFDS 631 Query 3732 ---ILNVPFA-IADATSLTE-----AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 3782 I+ + + + S++ GYVG + L + ++ Y V I DE Sbjct 632 EENIIRIDMSEYMEKYSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSV-------ILFDE 684 Query 3783 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 3842 I+K + + V L+IL+ + G+ + I I T+NI Sbjct 685 IEK--------------AHDDVFNIFLQILDD--GRLTDNKGKTVDFKNCIIIMTSNI-- 726 Query 3843 ICGGAF-------DGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 3895 G ++ DGI++ +K NK ++ K+ RF Sbjct 727 --GSSYLLENKKEDGIDETVK-------------NKVSNALKD------------RFK-- 757 Query 3896 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 3955 PEF+ RL I + L + I+ + ++ + L+ N+ L E A +AK+ Sbjct 758 PEFLNRLDDIIMFKPLTNREITKII----DIFLQDIENRLKDRNITLIVTENAKELMAKE 813 Query 3956 AIERKTGARGLRSIIEGIM 3974 + GAR L+ IE I+ Sbjct 814 GYDAIYGARPLKRYIENIL 832 Lambda K H a alpha 0.320 0.131 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32818149453 Database: proteo.fasta Posted date: Sep 12, 2014 3:46 AM Number of letters in database: 14,146,411 Number of sequences in database: 48,182 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40