TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= SDHA_HUMAN Length=664 Score E Sequences producing significant alignments: (Bits) Value scaffold-199 827 0.0 scaffold-212 822 0.0 scaffold-277 52.8 6e-07 scaffold-105 52.8 6e-07 > scaffold-199 Length=1112851 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/616 (68%), Positives = 488/616 (79%), Gaps = 18/616 (3%) Frame = -2 Query 50 SISAQYPVVDHEFDavvvgaggaglraafgLSEAGFNTACVTKLFPTRSHTVAAQGGINA 109 S S Y V+DHEFDAVVVGAGGAGLRAAFGL+ +GF ACVTKLFPTRSHTVAA GGINA Sbjct 386025 STSKAYTVIDHEFDAVVVGAGGAGLRAAFGLASSGFKVACVTKLFPTRSHTVAA*GGINA 385846 Query 110 ALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIY 169 ALGNM ED+WRWH YDTVKGSDWLGD DAIHYM ++AP+ V+ELE+YGMPFSRT +GKIY Sbjct 385845 ALGNMTEDDWRWHMYDTVKGSDWLGD*DAIHYMCKEAPSTVIELEHYGMPFSRTPEGKIY 385666 Query 170 QRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENG 229 RAFGGQSL +GKGG A+RC VADRTGHSLLHTLYG SLRYD +YF+EY ALDL+MENG Sbjct 385665 *RAFGGQSL*YGKGG*AYRCAAVADRTGHSLLHTLYG*SLRYDCNYFIEYLALDLIMENG 385486 Query 230 ECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQD 289 ECRG++ALC+EDG++HR A T++ATGGYGR YFSCTSAHT TGDG AM+ RAGLP D Sbjct 385485 ECRGIMALCLEDGTLHRFNAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVARAGLPL*D 385306 Query 290 LEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTL 349 +EFV FHPTGIYG+GCLITEG RGEGG L+N GERFMERYAP AKDLASRDVVSRSMT+ Sbjct 385305 MEFV*FHPTGIYGSGCLITEGSRGEGGYLLNGNGERFMERYAPTAKDLASRDVVSRSMTI 385126 Query 350 EIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYN 409 EI EGRG GPEKDH++L L HLP + L RLPGISETAMIFAGVDVTKEPIPVLPTVHYN Sbjct 385125 EILEGRGVGPEKDHIHL*LSHLPAQVLHERLPGISETAMIFAGVDVTKEPIPVLPTVHYN 384946 Query 410 MGGIPTNYKGQVLR-HVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACA 468 MGGIPT Y G+VL +G+D+IVPGL+A GEAAC SVHGANRLGANSLLD+VVFGRA A Sbjct 384945 MGGIPTKYTGEVLTVDKDGKDKIVPGLFAAGEAACVSVHGANRLGANSLLDIVVFGRAIA 384766 Query 469 LSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRV 528 I E+ +PG+K+ P+ AGE+++ +LD++R+A G + TSELRL M K+MQNHAAVFR Sbjct 384765 HHITETSKPGEKLKPLPAGAGEKTI*DLDEMRYAKGQVPTSELRLKM*KTMQNHAAVFRE 384586 Query 529 GSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKES 588 L G K+ + + + DRG++WNTDL ET EL+NL+ A+QT+Y A RKES Sbjct 384585 QKSLD*GVSKMDDVVKEFSDIGVKDRGLIWNTDLTETWELRNLLNNAIQTMYSAWNRKES 384406 Query 589 RGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKT 648 RGAHAR+DYK R D ++W KHTLS+ D KV L+YR V T Sbjct 384405 RGAHARDDYKERDD-----------------KNWMKHTLSWFDEDKNKVKLDYRGVTMTT 384277 Query 649 LNEADCATVPPAIRSY 664 L+E +CA+VPP R Y Sbjct 384276 LDEKECASVPPMKRVY 384229 > scaffold-212 Length=372105 Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/616 (68%), Positives = 487/616 (79%), Gaps = 18/616 (3%) Frame = +2 Query 50 SISAQYPVVDHEFDavvvgaggaglraafgLSEAGFNTACVTKLFPTRSHTVAAQGGINA 109 S S Y V+DHEFDAVVVGAGGAGLRAAFGL+ +GF ACVTKLFPTRSHTVAA GGINA Sbjct 160730 STSKAYTVIDHEFDAVVVGAGGAGLRAAFGLASSGFKVACVTKLFPTRSHTVAA*GGINA 160909 Query 110 ALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIY 169 ALGNM ED+WRWH YDTVKGSDWLGD DAIHYM ++AP+ V+ELE+YGMPFSRT +GKIY Sbjct 160910 ALGNMTEDDWRWHMYDTVKGSDWLGD*DAIHYMCKEAPSTVIELEHYGMPFSRTPEGKIY 161089 Query 170 QRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENG 229 RAFGGQSL +GKGG A+RC VADRTGHSLLHTLYG SLRYD +YF+EY ALDL+MENG Sbjct 161090 *RAFGGQSL*YGKGG*AYRCAAVADRTGHSLLHTLYG*SLRYDCNYFIEYLALDLIMENG 161269 Query 230 ECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQD 289 ECRG++ALC+EDG++HR A T++ATGGYGR YFSCTSAHT TGDG AM+ RAGLP D Sbjct 161270 ECRGIMALCLEDGTLHRFNAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVARAGLPL*D 161449 Query 290 LEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTL 349 +EFV FHPTGIYG+GCLITEG RGEGG L+N GERFMERYAP AKDLASRDVVSRSMT+ Sbjct 161450 MEFV*FHPTGIYGSGCLITEGSRGEGGYLLNGNGERFMERYAPTAKDLASRDVVSRSMTI 161629 Query 350 EIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYN 409 EI EGRG GPEKDH++L L HLP + L RLPGISETAMIFAGVDVTKEPIPVLPTVHYN Sbjct 161630 EILEGRGVGPEKDHIHL*LSHLPAQVLHERLPGISETAMIFAGVDVTKEPIPVLPTVHYN 161809 Query 410 MGGIPTNYKGQVLR-HVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACA 468 MGGIPT Y G+VL +G+D+IVPGL+A GEAAC SVHGANRLGANSLLD+VVFGRA A Sbjct 161810 MGGIPTKYTGEVLTVDKDGKDKIVPGLFAAGEAACVSVHGANRLGANSLLDIVVFGRAIA 161989 Query 469 LSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRV 528 I E+ +PG+K+ P+ AGE+++ +LD++R A G + TSELRL M K+MQNHAAVFR Sbjct 161990 HHITETSKPGEKLKPLPAGAGEKTI*DLDEMRHAKGQVPTSELRLKM*KTMQNHAAVFRE 162169 Query 529 GSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKES 588 L +G K+ + + + DRG++WNTDL ET EL+NL+ A+ T+Y A RKES Sbjct 162170 QKSLDQGVSKMDDVVKEFSDIGVKDRGLIWNTDLTETWELRNLLNNAI*TMYSAWNRKES 162349 Query 589 RGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKT 648 RGAHAR+DYK R D ++W KHTLS+ D KV L+YR V T Sbjct 162350 RGAHARDDYKERDD-----------------KNWMKHTLSWFDEDKNKVKLDYRGVTMTT 162478 Query 649 LNEADCATVPPAIRSY 664 L+E +CA+VPP R Y Sbjct 162479 LDEKECASVPPMKRVY 162526 > scaffold-277 Length=563196 Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 29/118 (25%) Frame = +2 Query 252 TVVATGGYGRTYFS---------------CTSAHTSTGDGTAMITRAGLPCQDLEFVQFH 296 ++ATGGY + S T+ STGDG +AG D++ VQ H Sbjct 45599 VIIATGGYAADFTSDSLLKKYRPDIYDLPTTNGDHSTGDGIKFALKAGANTIDMDKVQVH 45778 Query 297 PTGIYGAG-------CLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSM 347 PTG+ L E RG GGIL+++ G RF + +L RD VS M Sbjct 45779 PTGLVDPNEPDAKVKFLAAEALRGCGGILLDANGNRFCD-------ELGHRDYVSGEM 45931 Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 4/67 (6%) Frame = +2 Query 402 VLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLV 461 V +H+ MGG+ + K QV V + V GL+ACGE VHGANRLG +SLL V Sbjct 46202 VTQVLHFTMGGL*IDDKSQV---VGSGGRPVDGLFACGEIG-GGVHGANRLGGSSLLGCV 46369 Query 462 VFGRACA 468 V+GR Sbjct 46370 VYGRVAG 46390 > scaffold-105 Length=655906 Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 29/118 (25%) Frame = +2 Query 252 TVVATGGYGRTYFS---------------CTSAHTSTGDGTAMITRAGLPCQDLEFVQFH 296 ++ATGGY + S T+ STGDG +AG D++ VQ H Sbjct 147005 VIIATGGYAADFTSDSLLKKYRPDIYDLPTTNGDHSTGDGIKFALKAGANTIDMDKVQVH 147184 Query 297 PTGIYGAG-------CLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSM 347 PTG+ L E RG GGIL+++ G RF + +L RD VS M Sbjct 147185 PTGLVDPNEPDAKVKFLAAEALRGCGGILLDANGNRFCD-------ELGHRDYVSGEM 147337 Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 4/67 (6%) Frame = +2 Query 402 VLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLV 461 V +H+ MGG+ + K QV V + V GL+ACGE VHGANRLG +SLL V Sbjct 147608 VTQVLHFTMGGL*IDDKSQV---VGSGGRPVDGLFACGEIG-GGVHGANRLGGSSLLGCV 147775 Query 462 VFGRACA 468 V+GR Sbjct 147776 VYGRVAG 147796 Lambda K H a alpha 0.319 0.136 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4355303719 Database: X5.fasta Posted date: Nov 5, 2016 4:47 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40