#pattern name sequence name start stop score p-value q-value matched sequence 1 NC_022103.1 61 71 11.7164 7.55E-05 0.529 AAGCCGACAAC US PP1ab 1 NC_022103.1 3734 3744 8.56386 0.000288 0.808 GAGCCTACGAC in PP1ab 1 NC_022103.1 6989 6999 8.72553 0.000277 0.808 GTCCAGGCAAC in PP1ab 1 NC_022103.1 9114 9124 5.81548 0.000782 1 ATCTAGCCAAA in PP1ab 1 NC_022103.1 16688 16698 10.0997 0.000175 0.808 AAGCAAGCAAA b/n PP1a & S 1 NC_022103.1 18267 18277 7.75551 0.000373 0.95 TACTAGACAAC b/n PP1a & S 1 NC_022103.1 20326 20336 6.94717 0.000484 1 ATGCATGCAAA 200nk US S 1 NC_022103.1 20416 20426 9.61471 0.000206 0.808 CACAAGGCAAC US S 1 NC_022103.1 24610 24620 13.8989 1.18E-05 0.11 AACCATACGAA US NS3 1 NC_022103.1 25290 25300 15.2731 1.96E-06 0.0548 AACTCGACGAA US E 1 NC_022103.1 25527 25537 11.0697 0.000111 0.619 GTCTAAACGAA US M 1 NC_022103.1 26219 26229 14.7073 4.94E-06 0.0692 AACTAAACAAA US N 1 NC_022103.1 26729 26739 8.80636 0.000268 0.808 ATCAAAGCAAA DS N