FIMO version 4.3.0, (Release date: 6 PDT 20)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

• Each of the following 29 motif occurrences has p-value less then 0.001
• The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
• The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.
• The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
• The table is sorted by increasing p-value.
• If the start position is larger then the end position, the motif occurrence is on the reverse strand.

Command line:

fimo --motif 1 --norc --verbosity 1 --output-pthresh 1.0E-3 meme_out2/meme.html HKU10.fasta

Settings:

output directory = fimo_out
MEME file name = meme_out2/meme.html
sequence file name = HKU10.fasta


background file name = (null)
motif name = motif
allow clobber = true


compute q-values = true
output p-threshold set = true
output q-threshold set = false


text only = false
scan both strands = false
max sequence length = 250000000


output q-value threshold =   1
output p-value threshold = 0.001
pseudocount = 0.1


verbosity = 1
selected motif = 1
 = 

This information can be useful in the event you wish to report a problem with the FIMO software.