Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.3.0, (Release date: 6 PDT 20)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
DATABASE
lm.fasta
Database contains
6
sequences,
584
residues
MOTIFS meme_out2/meme.html (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 11 | AACTAGACAAA |
2 | 11 | TGTTACAGTTG |
3 | 6 | TTCTTG |
Random model letter frequencies
(from non-redundant database):
A 0.282 C 0.222 G 0.229 T 0.267
Motif | Sequence Name | Start | End | p-value | q-value |
---|---|---|---|---|---|
1 | 4 | 84 | 94 | 1.96e-06 | 0.00102 |
1 | 6 | 91 | 101 | 4.94e-06 | 0.00129 |
1 | 3 | 65 | 75 | 1.18e-05 | 0.00206 |
1 | 1 | 61 | 71 | 7.55e-05 | 0.00985 |
1 | 5 | 90 | 100 | 0.000111 | 0.0115 |
Command line:
fimo --motif 1 --norc --verbosity 1 --output-pthresh 1.0E-3 meme_out2/meme.html lm.fasta
Settings:
output directory = fimo_out | MEME file name = meme_out2/meme.html | sequence file name = lm.fasta |
background file name = (null) | motif name = motif | allow clobber = true |
compute q-values = true | output p-threshold set = true | output q-threshold set = false |
text only = false | scan both strands = false | max sequence length = 250000000 |
output q-value threshold = 1 | output p-value threshold = 0.001 | pseudocount = 0.1 |
verbosity = 1 | selected motif = 1 | = |
This information can be useful in the event you wish to report a problem with the FIMO software.