########################################
# Program: needle
# Rundate: Sun  5 Apr 2009 20:17:37
# Commandline: needle
#    [-asequence] p02925.fasta
#    [-bsequence] p39325.fasta
#    [-outfile] global.needle
#    -gapopen 11
#    -gapextend 1
# Align_format: srspair
# Report_file: global.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: YTFQ_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 11.0
# Extend_penalty: 1.0
#
# Length: 327
# Identity:      94/327 (28.7%)
# Similarity:   150/327 (45.9%)
# Gaps:          40/327 (12.2%)
# Score: 326.0
# 
#
#=======================================

RBSB_ECOLI         1 MNMKKLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQ     49
                       |.|...:||||  ||.:|:.|:|.. |:........:.:..:..:.|:
YTFQ_ECOLI         1 --MWKRLLIVSAV--SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAK     46

RBSB_ECOLI        50 KEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA     99
                     .||:|.|..|.:.|.|.....::..|:....:|...:.|.|..:......
YTFQ_ECOLI        47 SEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV     96

RBSB_ECOLI       100 VKMANQANIPVITLDRQ---ATKGEVVSHIASDNVLGGKIAGDYIAKKA-    145
                     :|.|..|.|||..|||.   ..|...::.:.:||:|.||:.||::.|:. 
YTFQ_ECOLI        97 LKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN    146

RBSB_ECOLI       146 GEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKG    194
                     |:...|:||||..|.|.|.:|.:||.:|:. |....::.||..||.|.||
YTFQ_ECOLI       147 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKG    196

RBSB_ECOLI       195 LNVMQNLLTAH---PDVQAVFAQNDEMALGALRALQTAG---KSDVMVVG    238
                     ..||::.:.|.   .::..|:|.||:|.:||::|::.||   ..|::...
YTFQ_ECOLI       197 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGS    246

RBSB_ECOLI       239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV    288
                     .||.||..||:.||:..|::...|:..|     .|...|:..|.....|.
YTFQ_ECOLI       247 IDGVPDIYKAMMDGEANASVELTPNMAG-----PAFDALEKYKKDGTMPE    291

RBSB_ECOLI       289 DLKLVVKQ-------------------    296
                     .|.|....                   
YTFQ_ECOLI       292 KLTLTKSTLYLPDTAKEELEKKKNMGY    318


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