########################################
# Program: water
# Rundate: Sun  5 Apr 2009 20:19:04
# Commandline: water
#    [-asequence] p02925.fasta
#    [-bsequence] p39325.fasta
#    [-outfile] local.water
#    -gapopen 11
#    -gapextend 1
# Align_format: srspair
# Report_file: local.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: YTFQ_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 11.0
# Extend_penalty: 1.0
#
# Length: 276
# Identity:      88/276 (31.9%)
# Similarity:   143/276 (51.8%)
# Gaps:          14/276 ( 5.1%)
# Score: 332.0
# 
#
#=======================================

RBSB_ECOLI         3 MKKLATLVSAVALSATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKE     51
                     |.|...:||||  ||.:|:.|:|.. |:........:.:..:..:.|:.|
YTFQ_ECOLI         1 MWKRLLIVSAV--SAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSE     48

RBSB_ECOLI        52 ADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK    101
                     |:|.|..|.:.|.|.....::..|:....:|...:.|.|..:......:|
YTFQ_ECOLI        49 AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK     98

RBSB_ECOLI       102 MANQANIPVITLDRQ---ATKGEVVSHIASDNVLGGKIAGDYIAKKA-GE    147
                     .|..|.|||..|||.   ..|...::.:.:||:|.||:.||::.|:. |:
YTFQ_ECOLI        99 EAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGK    148

RBSB_ECOLI       148 GAKVIELQGIAGTSAARERGEGFQQAVA-AHKFNVLASQPADFDRIKGLN    196
                     ...|:||||..|.|.|.:|.:||.:|:. |....::.||..||.|.||..
YTFQ_ECOLI       149 PCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKE    198

RBSB_ECOLI       197 VMQNLLTAH---PDVQAVFAQNDEMALGALRALQTAG---KSDVMVVGFD    240
                     ||::.:.|.   .::..|:|.||:|.:||::|::.||   ..|::....|
YTFQ_ECOLI       199 VMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSID    248

RBSB_ECOLI       241 GTPDGEKAVNDGKLAATIAQLPDQIG    266
                     |.||..||:.||:..|::...|:..|
YTFQ_ECOLI       249 GVPDIYKAMMDGEANASVELTPNMAG    274


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