BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 33,949 sequences; 11,155,146 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q820F8|CLPX_STRAW ATP-dependent Clp protease ATP-binding subun... 535 0.0 sp|Q0SGZ3|CLPX_RHOJR ATP-dependent Clp protease ATP-binding subun... 534 0.0 sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subun... 528 0.0 sp|P9WPB9|CLPX_MYCTU ATP-dependent Clp protease ATP-binding subun... 519 0.0 sp|Q9CBY6|CLPX_MYCLE ATP-dependent Clp protease ATP-binding subun... 519 0.0 sp|Q6NFU7|CLPX_CORDI ATP-dependent Clp protease ATP-binding subun... 518 0.0 sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subun... 516 0.0 tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacte... 54.3 7e-08 tr|Q0S6Y7|Q0S6Y7_RHOJR Chaperone protein ClpB OS=Rhodococcus jost... 47.8 9e-06 tr|Q0S8C7|Q0S8C7_RHOJR ATP-binding subunit of ATP-dependent Clp p... 47.0 1e-05 tr|Q6NFB1|Q6NFB1_CORDI ATP-dependent Clp protease ATP-binding sub... 45.8 4e-05 sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase... 42.4 3e-04 tr|Q82QV8|Q82QV8_STRAW Putative AAA family ATPase OS=Streptomyces... 41.6 4e-04 tr|A1SDV1|A1SDV1_NOCSJ ATP-dependent zinc metalloprotease FtsH OS... 42.0 5e-04 tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS... 41.6 6e-04 tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arth... 41.6 7e-04 tr|Q82EE9|Q82EE9_STRAW ATP-dependent zinc metalloprotease FtsH OS... 41.6 7e-04 tr|Q82EB8|Q82EB8_STRAW Putative ATP-dependent Clp protease OS=Str... 41.6 8e-04 sp|P9WQN3|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=M... 41.2 9e-04 >sp|Q820F8|CLPX_STRAW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=clpX PE=3 SV=1 Length=428 Score = 535 bits (1377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/409 (64%), Positives = 324/409 (79%), Gaps = 9/409 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E + R LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEE-LPKPRE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG------VELGKSNILLIGPTGS 123 I L+ YV+GQE AKK L+VAVYNHYKR++ G+ G +EL KSNILL+GPTGS Sbjct 67 IYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGS 126 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKTLLA+TLAR+L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ GI+YI Sbjct 127 GKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYI 186 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 243 DEIDK++RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ + Sbjct 187 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNV 246 Query 244 LFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 303 LFI GGAFAGL+K+I R GIGFGAT+++K + S+ + V PEDL+KFG+IPE Sbjct 247 LFIVGGAFAGLEKLIESRA-GAKGIGFGATIRSKRELESKDQ-FEDVMPEDLVKFGMIPE 304 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 FIGRLPV+ +++ L EAL+QIL EP+NAL KQYQ LF L+GV+L+F EAL+AIA +A+ Sbjct 305 FIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAI 364 Query 364 ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 R+TGARGLR+I+E L+ MY++PS +DV +VVI V+ P LI Sbjct 365 LRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413 >sp|Q0SGZ3|CLPX_RHOJR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpX PE=3 SV=1 Length=426 Score = 534 bits (1375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/413 (63%), Positives = 331/413 (80%), Gaps = 8/413 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E + + LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAE-SSEVKLDELPKPAE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-----VELGKSNILLIGPTGSG 124 IR+ L++YVIGQ+ AK+ LAVAVYNHYKR++ GD VEL KSNIL++GPTG G Sbjct 67 IRDFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPTGCG 126 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 127 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 186 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 E+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +L Sbjct 187 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVL 246 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GAFAGL++++S RV GIGFGA V++K++ ++ + A+V PEDLIKFGLIPEF Sbjct 247 FIVAGAFAGLERIVSDRVGK-RGIGFGAEVRSKAEIDTQ-DHFAEVMPEDLIKFGLIPEF 304 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 IGRLPVVA++ L +E+L+QIL EPKNAL KQY LF+++GV+LEF +AL+AIA +A+ Sbjct 305 IGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIADQAIL 364 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 R TGARGLR+I+E LL MYD+PS +DVEKVV+ ++ P ++ KPE Sbjct 365 RGTGARGLRAIMEEVLLPVMYDIPSRDDVEKVVVSAETVNDNVLPTIVPRKPE 417 >sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=clpX PE=3 SV=1 Length=426 Score = 528 bits (1360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 267/423 (63%), Positives = 331/423 (78%), Gaps = 13/423 (3%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E A LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSEGA-EVSLDELPKPKE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG--------DTSNGVELGKSNILLIGPT 121 I L+ YVIGQEQAKK LAVAVYNHYKR++ G VE+ KSNIL+IGPT Sbjct 67 IFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPMSGKHSKEEVVEVAKSNILVIGPT 126 Query 122 GSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 181 G GKT LA+TLAR+L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ GI+ Sbjct 127 GCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGII 186 Query 182 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTS 241 YIDEIDK++RK++NPSITRDVSGEGVQQALLK+IEGT A+VPPQGGRKHP QEF+Q+DT+ Sbjct 187 YIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQIDTT 246 Query 242 KILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLI 301 ILF+ GGAFAGL+ +I RV + +GF A V+ K+++ +E +LLAQV PEDL KFGLI Sbjct 247 NILFVVGGAFAGLEHIIEQRVGKKT-LGFTAEVRGKAEREAE-DLLAQVRPEDLTKFGLI 304 Query 302 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 361 PEFIGRLP++A++++L +EAL+QIL EP+NAL KQYQ LF L+GV+LEF +A++AIA Sbjct 305 PEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIADN 364 Query 362 AMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID-ESVIDGQSKPLLIYGKPEAQQ 420 A+ R TGARGLR+I+E LL MYD+PS D+ KV++ E V+DG S P LI + E ++ Sbjct 365 ALERGTGARGLRAIIEEVLLHVMYDVPSRGDIAKVIVTREVVMDGVS-PTLIPRESEKKK 423 Query 421 ASG 423 S Sbjct 424 KSA 426 >sp|P9WPB9|CLPX_MYCTU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=clpX PE=1 SV=1 Length=426 Score = 519 bits (1336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 257/412 (62%), Positives = 323/412 (78%), Gaps = 8/412 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ + A + LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAD-ADDVKLDELPKPAE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-----VELGKSNILLIGPTGSG 124 IR L+ YVIGQ+ AK+ LAVAVYNHYKR++ G+ VEL KSNIL++GPTG G Sbjct 67 IREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPTGCG 126 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 127 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 186 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 E+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +L Sbjct 187 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVL 246 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GAFAGL+K+I RV G+GFGA V++K++ + A V PEDLIKFGLIPEF Sbjct 247 FIVAGAFAGLEKIIYERV-GKRGLGFGAEVRSKAE-IDTTDHFADVMPEDLIKFGLIPEF 304 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 IGRLPVVA++ L +E+L++IL EPKNAL KQY LF ++GV+LEF D+AL+AIA +A+ Sbjct 305 IGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIH 364 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 R TGARGLR+I+E LL MYD+PS +DV KVV+ + + P ++ KP Sbjct 365 RGTGARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNVLPTIVPRKP 416 >sp|Q9CBY6|CLPX_MYCLE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Mycobacterium leprae (strain TN) OX=272631 GN=clpX PE=3 SV=1 Length=426 Score = 519 bits (1336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 255/413 (62%), Positives = 323/413 (78%), Gaps = 8/413 (2%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 SG LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ + A + LP P Sbjct 7 SGDLLKCSFCGKSQTQVKKLIAGPGVYICDECIDLCNEIIEEELAD-ADDVQLDELPKPV 65 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-----VELGKSNILLIGPTGS 123 EIR L+ YVIGQ+ AK+ LAVAVYNHYKR++ G+ VEL KSNIL++GPTG Sbjct 66 EIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSKREPVELAKSNILMLGPTGC 125 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YI Sbjct 126 GKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYI 185 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 243 DE+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ + Sbjct 186 DEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNV 245 Query 244 LFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 303 LFI GAFAGLDK+I R+ G+GFGA V++K++ + A V PEDLIKFGLIPE Sbjct 246 LFIVAGAFAGLDKIIYERI-GKRGLGFGAEVRSKAE-IDTTDHFADVMPEDLIKFGLIPE 303 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 FIGRLPV+A++ L E+L++IL EPKNAL KQY LF ++GV+LEF ++AL+A+A +A+ Sbjct 304 FIGRLPVIASVINLDMESLVKILSEPKNALVKQYTWLFEMDGVELEFTNDALEAVADQAI 363 Query 364 ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 R TGARGLR+I+E LL MYD+PS +DV KVV+ + + P ++ KP Sbjct 364 HRGTGARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNVLPTIVPRKP 416 >sp|Q6NFU7|CLPX_CORDI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=clpX PE=3 SV=1 Length=430 Score = 518 bits (1333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 258/418 (62%), Positives = 321/418 (77%), Gaps = 12/418 (3%) Query 5 RKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSA- 63 R S LL CSFCGKSQ +V+KLIAG VYICDEC++LCN+II EE+ A + + Sbjct 3 RMQESADLLKCSFCGKSQKQVKKLIAGGGVYICDECIELCNEIIEEELNSSAAEAKDNGD 62 Query 64 -LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG--------VELGKSN 114 LP P +I LD YVIGQ+ AK++L+VAVYNHYKR+R ++ EL KSN Sbjct 63 RLPRPSQISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRTTHKRASEEETELQKSN 122 Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GPTGSGKT LA+TLARLLDVPF +ADAT+LTEAGYVGEDVENI+ KLLQ D+DVQ Sbjct 123 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQ 182 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 +AQRGI+Y+DE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA++PPQGGRKHP Q+ Sbjct 183 RAQRGIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQD 242 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 F+Q+DTS ILFI GAFAGL+KVI R GIGFGA + K+D + ++ V PED Sbjct 243 FIQLDTSNILFIVAGAFAGLEKVIEER-RGKKGIGFGAELTTKADTDAV-DVFRDVLPED 300 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 L+KFGLIPEFIGRLP+VAT+N L + +L+++L EP+N+L KQYQ LF+++ VDLEF EA Sbjct 301 LVKFGLIPEFIGRLPIVATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEA 360 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 L AIA A+ R TGARGLR+I+E L+ MYD+P EDV V I+E+ + G +P +I Sbjct 361 LQAIADLAIDRGTGARGLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418 >sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Arthrobacter sp. (strain FB24) OX=290399 GN=clpX PE=3 SV=1 Length=429 Score = 516 bits (1330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 263/416 (63%), Positives = 318/416 (76%), Gaps = 18/416 (4%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LL CSFCGKSQ +VRKLIAGP VYICDEC++LCN+II EE+ EVA LP P Sbjct 7 STDLLKCSFCGKSQKQVRKLIAGPGVYICDECIELCNEIIEEELAEVA-DLGSFELPKPR 65 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------SNGVELGKSNILL 117 EI + L +YVIGQE AK+ LAVAVYNHYKR++ G + VE+ KSNILL Sbjct 66 EIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSNILL 125 Query 118 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 IGPTG GKT LA+TLAR L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ Sbjct 126 IGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 185 Query 178 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 237 +GI+YIDEIDKISRKS+NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q Sbjct 186 QGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 245 Query 238 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATV-KAKSDKASEGELLAQVEPEDLI 296 +DT+ +LFI GAFAGL+ +I R GIGFGA + + K++ S GE++ PEDL+ Sbjct 246 IDTTNVLFIVAGAFAGLEDIIGSR-SGRKGIGFGAPLNEVKNNSDSYGEVM----PEDLL 300 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLPV+ T++ L ALIQIL PKNAL KQYQ +F L+GV+L F DEALD Sbjct 301 KFGLIPEFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQLDGVELLFDDEALD 360 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 IA +A+ R TGARGLR+I+E LL M+DLPS +D+ VVI V+ ++ P +I Sbjct 361 VIADQALERGTGARGLRAIMEEVLLPVMFDLPSRDDIASVVITADVVAKKAPPTMI 416 >tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3818 PE=3 SV=1 Length=857 Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 85/328 (26%), Positives = 144/328 (44%), Gaps = 65/328 (20%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V+GQE A ++A +V +R R G + G +G + L +GPTG GKT LA+ LA Sbjct 547 LHQRVVGQEDAVSLIAKSV----RRNRTGMGAAGRPIG--SFLFLGPTGVGKTELAKALA 600 Query 134 RLL------DVPFTMAD------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L + F M++ + L A GYVG D + + +++ Y Sbjct 601 GSLFGSEDSMIRFDMSEFGERHTVSRLVGAPPGYVGYDEAGQLTERVRRNPYS------- 653 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IV +DE++K D ++ V +G +L +G GR + + + Sbjct 654 IVLLDEVEKA--HPDVFNLLLQVLDDG------RLTDGH--------GRTVDFRNTVVIM 697 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TS + G F L T +G FG S+KA +LA+ ++ Sbjct 698 TSNL----GSEF--LASKAGPTGFTAAGDAFG------SEKALRDRVLAR------LRES 739 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 + PEF+ R+ + +L L QI++ + + A +G+ L ++A+D IA Sbjct 740 MRPEFLNRIDEIVLFRKLDRAQLRQIVR----LMLDETDARLRSQGIGLVVSEDAVDWIA 795 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDL 387 ++ + GAR +R +++ L D + DL Sbjct 796 ERGYEPEYGARPMRRVIQRELDDRIADL 823 >tr|Q0S6Y7|Q0S6Y7_RHOJR Chaperone protein ClpB OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpC2 PE=3 SV=1 Length=807 Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/332 (23%), Positives = 136/332 (41%), Gaps = 66/332 (20%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L VIGQ+ A + +A AV +R R G + +G + L +GPTG GKT LA Sbjct 502 LEDELHRRVIGQDDAVRAIARAV----RRSRTGMSDPDRPVG--SFLFLGPTGVGKTELA 555 Query 130 ETLARLL---DVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQK 175 + LA L + D + E GYVG + + +++ Y V Sbjct 556 KALAATLFGDENKMLRLDMSEFGERHTVSRLVGAPPGYVGYGEAGQLTEQVRRNPYSV-- 613 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 + +DEI+K +P + LL++++ GR Q Sbjct 614 -----ILLDEIEKA-----HPDVF---------NTLLQVLDD---------GRLTDGQ-G 644 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 VD + I +IS + +GF S+K ++ + Sbjct 645 RTVDFKNTVLIMTSNLGS--DIISSK---SGALGFSTGDAEASEKPLRDRVMGR------ 693 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 ++ + PEF+ R+ + +L E L +I + K+ Q+ +G+++ F + A+ Sbjct 694 LRESMRPEFLNRIDEIVIFRKLDNEQLHRITDLLLDDSRKRLQS----KGIEISFSEAAV 749 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDL 387 D IA+ + GAR LR ++ A+ D + DL Sbjct 750 DWIAEHGHQPEFGARPLRRSIQRAVDDRIADL 781 >tr|Q0S8C7|Q0S8C7_RHOJR ATP-binding subunit of ATP-dependent Clp protease OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpC1 PE=4 SV=1 Length=845 Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/330 (22%), Positives = 136/330 (41%), Gaps = 68/330 (21%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + L +IGQE A K +A A+ L++ +G + + GP+G GKT LA Sbjct 508 MEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSG------SFIFAGPSGVGKTELA 561 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVG-EDVENIIQKLLQKCDYDVQ 174 ++LA L D D A+ L A GYVG E+ + +K V+ Sbjct 562 KSLANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEK--------VR 613 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 + +V DEI+K ++ + LL+++E G Q Sbjct 614 RKPFSVVLFDEIEKAHQE--------------IYNTLLQVLE--------DGRLTDGQGR 651 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + + ++F + + K + G+GF K D+++ + +V E Sbjct 652 TVDFKNTVLIFTSNLGTSDISKAV--------GLGF---TSGKGDESNYERMKLKVHDE- 699 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 +K PEF+ R+ + ++L+ E ++Q++ + + + + + + +E D+A Sbjct 700 -LKKHFRPEFLNRIDDIVVFHQLTTEQIVQMV----DLMVARVEVALKNKDMTMEVTDKA 754 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTM 384 +AK+ GAR LR ++ + D + Sbjct 755 KSLLAKRGFDPVLGARPLRRTIQREIEDQL 784 >tr|Q6NFB1|Q6NFB1_CORDI ATP-dependent Clp protease ATP-binding subunit OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=clpC PE=4 SV=1 Length=883 Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/356 (21%), Positives = 148/356 (42%), Gaps = 67/356 (19%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + L +IGQ+ A K ++ A+ L++ +G + + GP+G GKT L+ Sbjct 528 MEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSG------SFIFAGPSGVGKTELS 581 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQK 175 ++LA L D D A+ L A GYVG D + + +++ + V Sbjct 582 KSLANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYDEGGQLTEKVRRKPFSV-- 639 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 V DEI+K ++ + LL+++E +G Q Sbjct 640 -----VLFDEIEKAHKE--------------IYNTLLQVLE--------EGRLTDGQGRV 672 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 + + ++F + K + G+GF + + D + + + Q + D Sbjct 673 VDFKNTVLIFTSNLGTQDISKAV--------GMGFSSV--GEHDADGQYDRMKQ-KVNDE 721 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 +K PEF+ R+ + ++L++E +++++ + L + + + +E ++A Sbjct 722 LKKHFRPEFLNRIDEIVVFHQLTQEQIVEMV----DLLIGRVSKALAQKDMGIELTEKAK 777 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV---EKVVIDESVIDGQSK 408 + +AK+ GAR LR ++ + D + + +V E V +D DG+SK Sbjct 778 NLLAKRGFDPVLGARPLRRTIQREIEDVLSEKILFGEVGAGEIVTVDVEGWDGESK 833 >sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase RuvB OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ruvB PE=3 SV=1 Length=362 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (49%), Gaps = 25/123 (20%) Query 72 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAET 131 +L D+V GQ + +K L++ + R R+ D ++LL GP G GKT L+ Sbjct 25 KNLHDFV-GQHRVRKQLSLVLEASRMRGRSAD----------HVLLSGPPGLGKTTLSMI 73 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 +A ++ P ++ + AG D+ I+ L ++ ++++DEI ++SR Sbjct 74 IAAEMNAPLRISSGPAIQHAG----DLAAILSSL----------SEGEVLFLDEIHRMSR 119 Query 192 KSD 194 ++ Sbjct 120 PAE 122 >tr|Q82QV8|Q82QV8_STRAW Putative AAA family ATPase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_387 PE=4 SV=1 Length=261 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (9%) Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKS---NILLIGPTGSGKTL 127 R H D V+ ++Q + + +A + + GD G + L GP+G+GKT Sbjct 3 RAHWADLVLPEQQTEVLRRMAGHVRHGATVFGDWGFGERTNRGQGVTALFSGPSGTGKTF 62 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 +E LA L + D + + YVGE +N+ Q +D ++ ++ DE D Sbjct 63 ASEVLAHELGLDLYRVDLSAVVNK-YVGETEKNLRQV------FDAAESGGSLLLFDEAD 115 Query 188 KI-SRKSD 194 + R+SD Sbjct 116 ALFGRRSD 123 >tr|A1SDV1|A1SDV1_NOCSJ ATP-dependent zinc metalloprotease FtsH OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=ftsH PE=3 SV=1 Length=681 Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 199 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQAKENAP 256 Query 175 KAQRGIVYIDEIDKISR 191 IV+IDEID + R Sbjct 257 ----AIVFIDEIDAVGR 269 >tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ftsH PE=3 SV=1 Length=689 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 205 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA----K 258 Query 175 KAQRGIVYIDEIDKISR 191 + I+++DEID + R Sbjct 259 ASSPAIIFVDEIDAVGR 275 >tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3981 PE=3 SV=1 Length=471 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/105 (29%), Positives = 52/105 (50%), Gaps = 18/105 (17%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYD 172 ++L GP G+GKT A+ +A L+ PF + L G G L++ + Sbjct 231 VVLFGPPGTGKTTFAKAIASRLEWPFVEVFPSRLAADPKGLAGA---------LRETFLE 281 Query 173 VQKAQRGIVYIDEIDKIS--RKSDNPSITRDVSGEGVQQALLKLI 215 + + + +V+IDE+++I+ R + PS +GV LLK+I Sbjct 282 IAELEHAVVFIDEVEEIASQRSGEPPSPL-----QGVTNELLKII 321 >tr|Q82EE9|Q82EE9_STRAW ATP-dependent zinc metalloprotease FtsH OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=ftsH PE=3 SV=1 Length=664 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQAKANAP 253 Query 175 KAQRGIVYIDEIDKISR 191 IV++DEID + R Sbjct 254 ----AIVFVDEIDAVGR 266 >tr|Q82EB8|Q82EB8_STRAW Putative ATP-dependent Clp protease OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=clpC2 PE=4 SV=1 Length=841 Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 83/380 (22%), Positives = 153/380 (40%), Gaps = 80/380 (21%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L VIGQ+ A K L+ A+ L++ G + + GP+G GKT L+ Sbjct 506 MEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGG------SFIFAGPSGVGKTELS 559 Query 130 ETLARLL----DVPFTMADATTLTEA-----------GYVG-EDVENIIQKLLQKCDYDV 173 + LA L D ++ D + +E GYVG E+ + +K V Sbjct 560 KALAEFLFGDEDALISL-DMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEK--------V 610 Query 174 QKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ 233 ++ +V DE++K +P I +LL+++E GR Q Sbjct 611 RRKPFSVVLFDEVEKA-----HPDIF---------NSLLQILED---------GRLTDSQ 647 Query 234 EFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPE 293 + VD + I D + G +GF A KS+ +A Sbjct 648 GRV-VDFKNTVIIMTTNLGTRD------ISKGFNLGFAAQGDTKSNYERMKNKVA----- 695 Query 294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE 353 D +K PEF+ R+ V +L+++ +++I+ + + + + +E Sbjct 696 DELKQHFRPEFLNRVDDVVVFPQLTQDDILRIV----DLMITKVDERLKDRDMGIELAQS 751 Query 354 ALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE--KVVIDESVIDGQSKPLL 411 A + +AKK GAR LR ++ + DT+ + ++ +V+ ++ +G++K Sbjct 752 AKELLAKKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVDTEGEGETKTFT 811 Query 412 IYGK--------PEAQQASG 423 G+ P +QA+G Sbjct 812 FRGEEKSALPDVPPIEQAAG 831 >sp|P9WQN3|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ftsH PE=1 SV=1 Length=760 Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 199 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEQA----K 252 Query 175 KAQRGIVYIDEIDKISRK 192 + I+++DEID + R+ Sbjct 253 QNSPCIIFVDEIDAVGRQ 270 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2495593931 Database: proteomes.fasta Posted date: May 26, 2023 1:35 PM Number of letters in database: 11,155,146 Number of sequences in database: 33,949 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40