******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ./housekeeping.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ AGIAALFC_00060 1.0000 100 AGIAALFC_00061 1.0000 100 AGIAALFC_00080 1.0000 100 AGIAALFC_00112 1.0000 100 AGIAALFC_00113 1.0000 100 AGIAALFC_00118 1.0000 100 AGIAALFC_00132 1.0000 100 AGIAALFC_00146 1.0000 100 AGIAALFC_00149 1.0000 100 AGIAALFC_00165 1.0000 100 AGIAALFC_00195 1.0000 100 AGIAALFC_00197 1.0000 100 AGIAALFC_00199 1.0000 100 AGIAALFC_00215 1.0000 100 AGIAALFC_00216 1.0000 100 AGIAALFC_00217 1.0000 100 AGIAALFC_00221 1.0000 100 AGIAALFC_00237 1.0000 100 AGIAALFC_00248 1.0000 100 AGIAALFC_00326 1.0000 100 AGIAALFC_00345 1.0000 100 AGIAALFC_00350 1.0000 100 AGIAALFC_00352 1.0000 100 AGIAALFC_00365 1.0000 100 AGIAALFC_00368 1.0000 100 AGIAALFC_00369 1.0000 100 AGIAALFC_00384 1.0000 100 AGIAALFC_00416 1.0000 100 AGIAALFC_00449 1.0000 100 AGIAALFC_00454 1.0000 100 AGIAALFC_00471 1.0000 100 AGIAALFC_00516 1.0000 100 AGIAALFC_00517 1.0000 100 AGIAALFC_00565 1.0000 100 AGIAALFC_00578 1.0000 100 AGIAALFC_00579 1.0000 100 AGIAALFC_00613 1.0000 100 AGIAALFC_00638 1.0000 100 AGIAALFC_00677 1.0000 100 AGIAALFC_00700 1.0000 100 AGIAALFC_00712 1.0000 100 AGIAALFC_00745 1.0000 100 AGIAALFC_00755 1.0000 100 AGIAALFC_00756 1.0000 100 AGIAALFC_00757 1.0000 100 AGIAALFC_00758 1.0000 100 AGIAALFC_00759 1.0000 100 AGIAALFC_00760 1.0000 100 AGIAALFC_00761 1.0000 100 AGIAALFC_00763 1.0000 100 AGIAALFC_00764 1.0000 100 AGIAALFC_00765 1.0000 100 AGIAALFC_00766 1.0000 100 AGIAALFC_00767 1.0000 100 AGIAALFC_00768 1.0000 100 AGIAALFC_00769 1.0000 100 AGIAALFC_00770 1.0000 100 AGIAALFC_00771 1.0000 100 AGIAALFC_00772 1.0000 100 AGIAALFC_00773 1.0000 100 AGIAALFC_00774 1.0000 100 AGIAALFC_00775 1.0000 100 AGIAALFC_00776 1.0000 100 AGIAALFC_00777 1.0000 100 AGIAALFC_00778 1.0000 100 AGIAALFC_00779 1.0000 100 AGIAALFC_00780 1.0000 100 AGIAALFC_00781 1.0000 100 AGIAALFC_00782 1.0000 100 AGIAALFC_00783 1.0000 100 AGIAALFC_00787 1.0000 100 AGIAALFC_00788 1.0000 100 AGIAALFC_00789 1.0000 100 AGIAALFC_00790 1.0000 100 AGIAALFC_00822 1.0000 100 AGIAALFC_00854 1.0000 100 AGIAALFC_00855 1.0000 100 AGIAALFC_00866 1.0000 100 AGIAALFC_00869 1.0000 100 AGIAALFC_00875 1.0000 100 AGIAALFC_00877 1.0000 100 AGIAALFC_00880 1.0000 100 AGIAALFC_00902 1.0000 100 AGIAALFC_00935 1.0000 100 AGIAALFC_00936 1.0000 100 AGIAALFC_00940 1.0000 100 AGIAALFC_00947 1.0000 100 AGIAALFC_00968 1.0000 100 AGIAALFC_00976 1.0000 100 AGIAALFC_00978 1.0000 100 AGIAALFC_00985 1.0000 100 AGIAALFC_00989 1.0000 100 AGIAALFC_00990 1.0000 100 AGIAALFC_00991 1.0000 100 AGIAALFC_00992 1.0000 100 AGIAALFC_00993 1.0000 100 AGIAALFC_00994 1.0000 100 AGIAALFC_00995 1.0000 100 AGIAALFC_00996 1.0000 100 AGIAALFC_00997 1.0000 100 AGIAALFC_01021 1.0000 100 AGIAALFC_01040 1.0000 100 AGIAALFC_01050 1.0000 100 AGIAALFC_01065 1.0000 100 AGIAALFC_01066 1.0000 100 AGIAALFC_01093 1.0000 100 AGIAALFC_01094 1.0000 100 AGIAALFC_01163 1.0000 100 AGIAALFC_01203 1.0000 100 AGIAALFC_01206 1.0000 100 AGIAALFC_01218 1.0000 100 AGIAALFC_01232 1.0000 100 AGIAALFC_01251 1.0000 100 AGIAALFC_01286 1.0000 100 AGIAALFC_01315 1.0000 100 AGIAALFC_01337 1.0000 100 AGIAALFC_01356 1.0000 100 AGIAALFC_01379 1.0000 100 AGIAALFC_01381 1.0000 100 AGIAALFC_01382 1.0000 100 AGIAALFC_01383 1.0000 100 AGIAALFC_01384 1.0000 100 AGIAALFC_01385 1.0000 100 AGIAALFC_01386 1.0000 100 AGIAALFC_01387 1.0000 100 AGIAALFC_01413 1.0000 100 AGIAALFC_01414 1.0000 100 AGIAALFC_01456 1.0000 100 AGIAALFC_01495 1.0000 100 AGIAALFC_01497 1.0000 100 AGIAALFC_01499 1.0000 100 AGIAALFC_01527 1.0000 100 AGIAALFC_01528 1.0000 100 AGIAALFC_01540 1.0000 100 AGIAALFC_01543 1.0000 100 AGIAALFC_01547 1.0000 100 AGIAALFC_01554 1.0000 100 AGIAALFC_01566 1.0000 100 AGIAALFC_01573 1.0000 100 AGIAALFC_01574 1.0000 100 AGIAALFC_01590 1.0000 100 AGIAALFC_01596 1.0000 100 AGIAALFC_01597 1.0000 100 AGIAALFC_01598 1.0000 100 AGIAALFC_01606 1.0000 100 AGIAALFC_01619 1.0000 100 AGIAALFC_01622 1.0000 100 AGIAALFC_01623 1.0000 100 AGIAALFC_01629 1.0000 100 AGIAALFC_01639 1.0000 100 AGIAALFC_01640 1.0000 100 AGIAALFC_01643 1.0000 100 AGIAALFC_01650 1.0000 100 AGIAALFC_01679 1.0000 100 AGIAALFC_01694 1.0000 100 AGIAALFC_01716 1.0000 100 AGIAALFC_01737 1.0000 100 AGIAALFC_01782 1.0000 100 AGIAALFC_01789 1.0000 100 AGIAALFC_01791 1.0000 100 AGIAALFC_01809 1.0000 100 AGIAALFC_01826 1.0000 100 AGIAALFC_01849 1.0000 100 AGIAALFC_01852 1.0000 100 AGIAALFC_01882 1.0000 100 AGIAALFC_01889 1.0000 100 AGIAALFC_01916 1.0000 100 AGIAALFC_01933 1.0000 100 AGIAALFC_01958 1.0000 100 AGIAALFC_01961 1.0000 100 AGIAALFC_01995 1.0000 100 AGIAALFC_02006 1.0000 100 AGIAALFC_02007 1.0000 100 AGIAALFC_02010 1.0000 100 AGIAALFC_02018 1.0000 100 AGIAALFC_02025 1.0000 100 AGIAALFC_02056 1.0000 100 AGIAALFC_02120 1.0000 100 AGIAALFC_02122 1.0000 100 AGIAALFC_02167 1.0000 100 AGIAALFC_02232 1.0000 100 AGIAALFC_02246 1.0000 100 AGIAALFC_02299 1.0000 100 AGIAALFC_02305 1.0000 100 AGIAALFC_02326 1.0000 100 AGIAALFC_02333 1.0000 100 AGIAALFC_02352 1.0000 100 AGIAALFC_02428 1.0000 100 AGIAALFC_02519 1.0000 100 AGIAALFC_02540 1.0000 100 AGIAALFC_02574 1.0000 100 AGIAALFC_02582 1.0000 100 AGIAALFC_02591 1.0000 100 AGIAALFC_02610 1.0000 100 AGIAALFC_02646 1.0000 100 AGIAALFC_02647 1.0000 100 AGIAALFC_02664 1.0000 100 AGIAALFC_02683 1.0000 100 AGIAALFC_02705 1.0000 100 AGIAALFC_02706 1.0000 100 AGIAALFC_02707 1.0000 100 AGIAALFC_02750 1.0000 100 AGIAALFC_02751 1.0000 100 AGIAALFC_02757 1.0000 100 AGIAALFC_02761 1.0000 100 AGIAALFC_02765 1.0000 100 AGIAALFC_02786 1.0000 100 AGIAALFC_02789 1.0000 100 AGIAALFC_02795 1.0000 100 AGIAALFC_02802 1.0000 100 AGIAALFC_02816 1.0000 100 AGIAALFC_02820 1.0000 100 AGIAALFC_02854 1.0000 100 AGIAALFC_02865 1.0000 100 AGIAALFC_02871 1.0000 100 AGIAALFC_02910 1.0000 100 AGIAALFC_02919 1.0000 100 AGIAALFC_02927 1.0000 100 AGIAALFC_02968 1.0000 100 AGIAALFC_02986 1.0000 100 AGIAALFC_02991 1.0000 100 AGIAALFC_03070 1.0000 100 AGIAALFC_03094 1.0000 100 AGIAALFC_03100 1.0000 100 AGIAALFC_03126 1.0000 100 AGIAALFC_03166 1.0000 100 AGIAALFC_03179 1.0000 100 AGIAALFC_03225 1.0000 100 AGIAALFC_03231 1.0000 100 AGIAALFC_03264 1.0000 100 AGIAALFC_03313 1.0000 100 AGIAALFC_03345 1.0000 100 AGIAALFC_03359 1.0000 100 AGIAALFC_03407 1.0000 100 AGIAALFC_03424 1.0000 100 AGIAALFC_03429 1.0000 100 AGIAALFC_03433 1.0000 100 AGIAALFC_03446 1.0000 100 AGIAALFC_03450 1.0000 100 AGIAALFC_03468 1.0000 100 AGIAALFC_03479 1.0000 100 AGIAALFC_03517 1.0000 100 AGIAALFC_03573 1.0000 100 AGIAALFC_03682 1.0000 100 AGIAALFC_03687 1.0000 100 AGIAALFC_03704 1.0000 100 AGIAALFC_03742 1.0000 100 AGIAALFC_03747 1.0000 100 AGIAALFC_03825 1.0000 100 AGIAALFC_03827 1.0000 100 AGIAALFC_03891 1.0000 100 AGIAALFC_03895 1.0000 100 AGIAALFC_03912 1.0000 100 AGIAALFC_03924 1.0000 100 AGIAALFC_03939 1.0000 100 AGIAALFC_03942 1.0000 100 AGIAALFC_03965 1.0000 100 AGIAALFC_03981 1.0000 100 AGIAALFC_04002 1.0000 100 AGIAALFC_04023 1.0000 100 AGIAALFC_04028 1.0000 100 AGIAALFC_04042 1.0000 100 AGIAALFC_04043 1.0000 100 AGIAALFC_04058 1.0000 100 AGIAALFC_04104 1.0000 100 AGIAALFC_04156 1.0000 100 AGIAALFC_04176 1.0000 100 AGIAALFC_04202 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme ./housekeeping.fasta -dna -nmotifs 3 -minw 6 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 268 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 26800 N= 268 sample: seed= 0 hsfrac= 0 searchsize= 26800 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.218 G 0.234 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.218 G 0.234 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 width = 50 sites = 7 llr = 255 E-value = 1.5e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9174:44a9:a33:1::13443341:3:::::31:4436414a:1::33: pos.-specific C :9:3::3::::1::3:a13:16:::a3:111:::a111:141:a3:13:7 probability G ::3::63:1a::7:1a:4311:149:39939:1::111:413::6a:1:3 matrix T 1::3a::::::6:a4::3143161::11:6:a69:3344:31::::937: bits 2.2 * ** * * * * 2.0 * * * ** * * * * * 1.8 * * ** * ** * * * ** * 1.5 * * * ** * ** ** ** ** * ** * Relative 1.3 ** * **** * ** ** ** ** ** ** ** * Entropy 1.1 *** * **** ** ** ** ** ** ** ** ** ** (52.6 bits) 0.9 *** ** **** ** ** ** ** ** ** * ** ** ** 0.7 *** ** ******* ** * ** ***** ** * ***** ** 0.4 ************** ** * ***** ******** ** ***** ** 0.2 ****************** * ***** ******** ********** ** 0.0 -------------------------------------------------- Multilevel ACAATGAAAGATGTTGCGAAACTAGCAGGTGTTTCAATAACAACGGTATC consensus GC AC AA C TCTTAAG C G A TTATGTG C CAG sequence T G G G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- AGIAALFC_00880 51 1.05e-20 CACAATGACC ACGATGAAAGATGTTGCTGAAATGGCAGGTGTATCAACAGCAACCGTGTC AGIAALFC_02854 27 2.68e-19 ACGTGTGGCC ACAATGAAAGATGTTGCGCTGAGGGCTGGGGTTTCAGTAGCAACGGTCAG TCGTGTTCTT AGIAALFC_00822 27 2.14e-18 AAAGATGGTT ACACTGGAAGACGTCGCGGTATTAGCCGGGGTATCCCGTGCTACGGTTTC CCGCGTGGTC AGIAALFC_00146 39 7.87e-18 GAAAAGCACC ACATTAGAAGATGTTGCCCGCCATGCAGGTGTTTCTTATCAAACGGTTTC TCGGGTACTG AGIAALFC_03433 27 1.88e-16 CGTAATGGTC TCACTGAAAGAAGTGGCAAATCTAGCCTCTGTTTCATTAATGACCGCATC TCGAGCGATT AGIAALFC_02610 39 7.85e-16 CCAGCGAGTT ACGTTACAGGATATCGCGTTACTGGCGGGCGTGACTAAAATGACAGTCAG CCGCTATTTA AGIAALFC_00149 36 8.28e-16 TGGAAAGCTA AAAATACAAGAAATAGCTAATCAAACGGGTCTTTCGATTAGCACGGTATC AAGAGTGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AGIAALFC_00880 1.1e-20 50_[+1] AGIAALFC_02854 2.7e-19 26_[+1]_24 AGIAALFC_00822 2.1e-18 26_[+1]_24 AGIAALFC_00146 7.9e-18 38_[+1]_12 AGIAALFC_03433 1.9e-16 26_[+1]_24 AGIAALFC_02610 7.9e-16 38_[+1]_12 AGIAALFC_00149 8.3e-16 35_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC width=50 seqs=7 AGIAALFC_00880 ( 51) ACGATGAAAGATGTTGCTGAAATGGCAGGTGTATCAACAGCAACCGTGTC 1 AGIAALFC_02854 ( 27) ACAATGAAAGATGTTGCGCTGAGGGCTGGGGTTTCAGTAGCAACGGTCAG 1 AGIAALFC_00822 ( 27) ACACTGGAAGACGTCGCGGTATTAGCCGGGGTATCCCGTGCTACGGTTTC 1 AGIAALFC_00146 ( 39) ACATTAGAAGATGTTGCCCGCCATGCAGGTGTTTCTTATCAAACGGTTTC 1 AGIAALFC_03433 ( 27) TCACTGAAAGAAGTGGCAAATCTAGCCTCTGTTTCATTAATGACCGCATC 1 AGIAALFC_02610 ( 39) ACGTTACAGGATATCGCGTTACTGGCGGGCGTGACTAAAATGACAGTCAG 1 AGIAALFC_00149 ( 36) AAAATACAAGAAATAGCTAATCAAACGGGTCTTTCGATTAGCACGGTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 13668 bayes= 10.7742 E= 1.5e-018 158 -945 -945 -87 -100 197 -945 -945 132 -945 29 -945 58 39 -945 12 -945 -945 -945 193 58 -945 128 -945 58 39 29 -945 181 -945 -945 -945 158 -945 -71 -945 -945 -945 209 -945 181 -945 -945 -945 0 -61 -945 112 0 -945 161 -945 -945 -945 -945 193 -100 39 -71 71 -945 -945 209 -945 -945 220 -945 -945 -100 -61 87 12 0 39 29 -87 58 -945 -71 71 58 -61 -71 12 0 139 -945 -87 0 -945 -71 112 58 -945 87 -87 -100 -945 187 -945 -945 220 -945 -945 0 39 29 -87 -945 -945 187 -87 -945 -61 187 -945 -945 -61 29 112 -945 -61 187 -945 -945 -945 -945 193 0 -945 -71 112 -100 -945 -945 171 -945 220 -945 -945 58 -61 -71 12 58 -61 -71 12 0 -61 -71 71 100 -945 -945 71 58 -61 87 -945 -100 97 -71 12 58 -61 29 -87 181 -945 -945 -945 -945 220 -945 -945 -100 39 128 -945 -945 -945 209 -945 -945 -61 -945 171 0 39 -71 12 0 -945 -945 145 -945 171 29 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 7 E= 1.5e-018 0.857143 0.000000 0.000000 0.142857 0.142857 0.857143 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.428571 0.285714 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.428571 0.000000 0.571429 0.000000 0.428571 0.285714 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.142857 0.000000 0.571429 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.285714 0.142857 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.142857 0.428571 0.285714 0.285714 0.285714 0.285714 0.142857 0.428571 0.000000 0.142857 0.428571 0.428571 0.142857 0.142857 0.285714 0.285714 0.571429 0.000000 0.142857 0.285714 0.000000 0.142857 0.571429 0.428571 0.000000 0.428571 0.142857 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.285714 0.285714 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.285714 0.571429 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.142857 0.571429 0.142857 0.000000 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.428571 0.142857 0.142857 0.285714 0.428571 0.142857 0.142857 0.285714 0.285714 0.142857 0.142857 0.428571 0.571429 0.000000 0.000000 0.428571 0.428571 0.142857 0.428571 0.000000 0.142857 0.428571 0.142857 0.285714 0.428571 0.142857 0.285714 0.142857 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.285714 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.285714 0.285714 0.142857 0.285714 0.285714 0.000000 0.000000 0.714286 0.000000 0.714286 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAHTRVAAGAWGTYGCKNWWMWRGCNGGKGTWTCWWWWRYRACSGTNTC MEME-1 regular expression -------------------------------------------------------------------------------- AC[AG][ACT]T[GA][ACG]AAGA[TA][GA]T[TC]GC[GT][ACG][AT][AT][CA][TA][AG]GC[ACG]GG[TG]GT[TA]TC[AT][AT][TA][AT][AG][CT][AG]AC[GC]GT[ACT][TA][CG] -------------------------------------------------------------------------------- Time 39.37 secs. ******************************************************************************** ******************************************************************************** MOTIF YGTAGCHATTCGTTTTKMT MEME-2 width = 19 sites = 8 llr = 134 E-value = 5.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :116133a::1:::1::41 pos.-specific C 5::1:84:119::1:::6: probability G 19:39::::::91::36:: matrix T 4:9:::4:99:199984:9 bits 2.2 2.0 1.8 * 1.5 * * * ** Relative 1.3 ** ** ******** * Entropy 1.1 ** ** ************ (24.1 bits) 0.9 ** ** ************ 0.7 ****** ************ 0.4 ******************* 0.2 ******************* 0.0 ------------------- Multilevel CGTAGCCATTCGTTTTGCT consensus T G AT GTA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- AGIAALFC_02006 74 1.63e-10 GTAGGCATGA TGTGGCCATTCGTTTTTCT CAAACGAT AGIAALFC_01528 52 9.61e-10 ACGGCATAAG CGTGGCTATTCGTTTTGCA CTCCGATAAG AGIAALFC_00767 24 4.75e-09 GGTCCAGACG CGTAGATATTCTTTTTTCT ACTCGACGGT AGIAALFC_01849 23 1.30e-08 AGGATGTTAT GGTAACAATTCGTTTGGCT CGTGGCGGCG AGIAALFC_00765 26 1.40e-08 TCTACGGCGT CGTCGACATCCGTTTTGAT AACGACTCGC AGIAALFC_02056 62 1.77e-08 GTTTAACCAG CAAAGCCATTCGTTTTTAT GAAGAAAAAA AGIAALFC_00782 60 2.20e-08 GCAGACCAAC TGTAGCAACTCGGTTGGCT CTTTTGGCAA AGIAALFC_01094 65 8.78e-08 CGAAGCAGGC TGTAGCTATTAGTCATGAT GAATTAAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AGIAALFC_02006 1.6e-10 73_[+2]_8 AGIAALFC_01528 9.6e-10 51_[+2]_30 AGIAALFC_00767 4.7e-09 23_[+2]_58 AGIAALFC_01849 1.3e-08 22_[+2]_59 AGIAALFC_00765 1.4e-08 25_[+2]_56 AGIAALFC_02056 1.8e-08 61_[+2]_20 AGIAALFC_00782 2.2e-08 59_[+2]_22 AGIAALFC_01094 8.8e-08 64_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGTAGCHATTCGTTTTKMT width=19 seqs=8 AGIAALFC_02006 ( 74) TGTGGCCATTCGTTTTTCT 1 AGIAALFC_01528 ( 52) CGTGGCTATTCGTTTTGCA 1 AGIAALFC_00767 ( 24) CGTAGATATTCTTTTTTCT 1 AGIAALFC_01849 ( 23) GGTAACAATTCGTTTGGCT 1 AGIAALFC_00765 ( 26) CGTCGACATCCGTTTTGAT 1 AGIAALFC_02056 ( 62) CAAAGCCATTCGTTTTTAT 1 AGIAALFC_00782 ( 60) TGTAGCAACTCGGTTGGCT 1 AGIAALFC_01094 ( 65) TGTAGCTATTAGTCATGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 21976 bayes= 11.4231 E= 5.1e+000 -965 120 -91 52 -119 -965 190 -965 -119 -965 -965 174 113 -80 9 -965 -119 -965 190 -965 -19 178 -965 -965 -19 78 -965 52 181 -965 -965 -965 -965 -80 -965 174 -965 -80 -965 174 -119 200 -965 -965 -965 -965 190 -107 -965 -965 -91 174 -965 -80 -965 174 -119 -965 -965 174 -965 -965 9 152 -965 -965 141 52 39 152 -965 -965 -119 -965 -965 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 8 E= 5.1e+000 0.000000 0.500000 0.125000 0.375000 0.125000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.875000 0.625000 0.125000 0.250000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.375000 0.000000 0.375000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.875000 0.000000 0.125000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.625000 0.375000 0.375000 0.625000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTAGCHATTCGTTTTKMT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]GT[AG]G[CA][CTA]ATTCGTTT[TG][GT][CA]T -------------------------------------------------------------------------------- Time 76.66 secs. ******************************************************************************** ******************************************************************************** MOTIF ASCAGCAG MEME-3 width = 8 sites = 11 llr = 116 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::a::a: pos.-specific C :6a::a:: probability G :4::a::a matrix T :::::::: bits 2.2 * ** * 2.0 * ** * 1.8 * ****** 1.5 * ****** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCAGCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- AGIAALFC_03407 44 1.33e-05 CTCAAAACGC ACCAGCAG CTATCGGACC AGIAALFC_00779 83 1.33e-05 CAGTCGCACA ACCAGCAG CATCGCTGAC AGIAALFC_00777 46 1.33e-05 GACAGGTATT ACCAGCAG TCGTGCAAGG AGIAALFC_00768 42 1.33e-05 CGTTGGTTTG ACCAGCAG GAGTACCAAA AGIAALFC_00471 71 1.33e-05 GGCGGGATAC ACCAGCAG GCACCGAAGT AGIAALFC_00416 49 1.33e-05 AGACGGTTGT ACCAGCAG TTAGCTGCAG AGIAALFC_00113 91 1.33e-05 GTTGCCGAAT ACCAGCAG CT AGIAALFC_02820 68 2.75e-05 CGGTGGTTAA AGCAGCAG CGTTGAGTCA AGIAALFC_02574 52 2.75e-05 AGTGAACTAC AGCAGCAG ATCCGTGATC AGIAALFC_02333 89 2.75e-05 GTTTTACCAA AGCAGCAG GTAA AGIAALFC_01716 67 2.75e-05 GATGTAATCG AGCAGCAG CTCGAATACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AGIAALFC_03407 1.3e-05 43_[+3]_49 AGIAALFC_00779 1.3e-05 82_[+3]_10 AGIAALFC_00777 1.3e-05 45_[+3]_47 AGIAALFC_00768 1.3e-05 41_[+3]_51 AGIAALFC_00471 1.3e-05 70_[+3]_22 AGIAALFC_00416 1.3e-05 48_[+3]_44 AGIAALFC_00113 1.3e-05 90_[+3]_2 AGIAALFC_02820 2.8e-05 67_[+3]_25 AGIAALFC_02574 2.8e-05 51_[+3]_41 AGIAALFC_02333 2.8e-05 88_[+3]_4 AGIAALFC_01716 2.8e-05 66_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ASCAGCAG width=8 seqs=11 AGIAALFC_03407 ( 44) ACCAGCAG 1 AGIAALFC_00779 ( 83) ACCAGCAG 1 AGIAALFC_00777 ( 46) ACCAGCAG 1 AGIAALFC_00768 ( 42) ACCAGCAG 1 AGIAALFC_00471 ( 71) ACCAGCAG 1 AGIAALFC_00416 ( 49) ACCAGCAG 1 AGIAALFC_00113 ( 91) ACCAGCAG 1 AGIAALFC_02820 ( 68) AGCAGCAG 1 AGIAALFC_02574 ( 52) AGCAGCAG 1 AGIAALFC_02333 ( 89) AGCAGCAG 1 AGIAALFC_01716 ( 67) AGCAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 24924 bayes= 11.5004 E= 2.1e+002 181 -1010 -1010 -1010 -1010 154 63 -1010 -1010 220 -1010 -1010 181 -1010 -1010 -1010 -1010 -1010 209 -1010 -1010 220 -1010 -1010 181 -1010 -1010 -1010 -1010 -1010 209 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.1e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASCAGCAG MEME-3 regular expression -------------------------------------------------------------------------------- A[CG]CAGCAG -------------------------------------------------------------------------------- Time 113.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AGIAALFC_00060 4.58e-01 100 AGIAALFC_00061 9.88e-01 100 AGIAALFC_00080 7.91e-01 100 AGIAALFC_00112 8.26e-02 100 AGIAALFC_00113 2.09e-03 90_[+3(1.33e-05)]_2 AGIAALFC_00118 7.56e-01 100 AGIAALFC_00132 7.74e-01 100 AGIAALFC_00146 1.02e-13 38_[+1(7.87e-18)]_12 AGIAALFC_00149 1.62e-11 35_[+1(8.28e-16)]_15 AGIAALFC_00165 2.21e-01 100 AGIAALFC_00195 2.69e-01 100 AGIAALFC_00197 4.84e-01 100 AGIAALFC_00199 8.13e-01 100 AGIAALFC_00215 1.20e-01 100 AGIAALFC_00216 6.91e-01 100 AGIAALFC_00217 4.53e-02 100 AGIAALFC_00221 5.10e-01 100 AGIAALFC_00237 2.55e-02 51_[+2(3.09e-05)]_30 AGIAALFC_00248 2.37e-02 100 AGIAALFC_00326 6.68e-02 100 AGIAALFC_00345 4.84e-01 100 AGIAALFC_00350 3.01e-02 100 AGIAALFC_00352 8.02e-02 100 AGIAALFC_00365 2.69e-01 100 AGIAALFC_00368 8.97e-02 100 AGIAALFC_00369 1.10e-01 100 AGIAALFC_00384 3.40e-01 100 AGIAALFC_00416 5.24e-03 48_[+3(1.33e-05)]_44 AGIAALFC_00449 1.57e-01 100 AGIAALFC_00454 4.12e-01 100 AGIAALFC_00471 4.51e-03 70_[+3(1.33e-05)]_22 AGIAALFC_00516 4.48e-01 100 AGIAALFC_00517 9.30e-01 100 AGIAALFC_00565 9.49e-01 100 AGIAALFC_00578 9.69e-01 100 AGIAALFC_00579 1.14e-01 100 AGIAALFC_00613 5.23e-01 100 AGIAALFC_00638 5.36e-01 100 AGIAALFC_00677 8.03e-01 100 AGIAALFC_00700 1.42e-01 100 AGIAALFC_00712 2.25e-01 100 AGIAALFC_00745 6.27e-01 100 AGIAALFC_00755 7.01e-01 100 AGIAALFC_00756 6.65e-01 100 AGIAALFC_00757 8.40e-01 100 AGIAALFC_00758 7.43e-01 100 AGIAALFC_00759 2.46e-01 100 AGIAALFC_00760 1.80e-01 100 AGIAALFC_00761 1.77e-02 100 AGIAALFC_00763 3.17e-01 100 AGIAALFC_00764 9.53e-01 100 AGIAALFC_00765 1.05e-04 25_[+2(1.40e-08)]_56 AGIAALFC_00766 2.06e-01 100 AGIAALFC_00767 9.71e-06 23_[+2(4.75e-09)]_58 AGIAALFC_00768 4.00e-03 41_[+3(1.33e-05)]_51 AGIAALFC_00769 3.62e-01 100 AGIAALFC_00770 1.63e-01 100 AGIAALFC_00771 3.17e-01 100 AGIAALFC_00772 7.16e-01 100 AGIAALFC_00773 7.82e-01 100 AGIAALFC_00774 3.39e-01 100 AGIAALFC_00775 1.73e-01 100 AGIAALFC_00776 5.03e-03 23_[+2(9.86e-06)]_58 AGIAALFC_00777 3.59e-03 45_[+3(1.33e-05)]_47 AGIAALFC_00778 1.51e-01 100 AGIAALFC_00779 1.76e-02 82_[+3(1.33e-05)]_10 AGIAALFC_00780 8.00e-02 100 AGIAALFC_00781 7.69e-01 100 AGIAALFC_00782 2.62e-05 59_[+2(2.20e-08)]_22 AGIAALFC_00783 9.32e-01 100 AGIAALFC_00787 8.48e-01 100 AGIAALFC_00788 7.52e-01 100 AGIAALFC_00789 3.59e-01 100 AGIAALFC_00790 1.21e-01 100 AGIAALFC_00822 9.70e-15 26_[+1(2.14e-18)]_24 AGIAALFC_00854 7.07e-01 100 AGIAALFC_00855 3.14e-01 100 AGIAALFC_00866 8.43e-02 100 AGIAALFC_00869 8.16e-01 100 AGIAALFC_00875 3.29e-03 21_[+1(4.95e-06)]_29 AGIAALFC_00877 6.85e-02 100 AGIAALFC_00880 5.35e-17 50_[+1(1.05e-20)] AGIAALFC_00902 8.30e-01 100 AGIAALFC_00935 7.39e-01 100 AGIAALFC_00936 7.32e-01 100 AGIAALFC_00940 4.25e-02 100 AGIAALFC_00947 1.19e-01 100 AGIAALFC_00968 9.48e-01 100 AGIAALFC_00976 3.77e-01 100 AGIAALFC_00978 1.14e-01 100 AGIAALFC_00985 6.56e-01 100 AGIAALFC_00989 1.17e-01 100 AGIAALFC_00990 3.75e-01 100 AGIAALFC_00991 6.22e-01 100 AGIAALFC_00992 9.11e-01 100 AGIAALFC_00993 3.67e-01 100 AGIAALFC_00994 7.24e-01 100 AGIAALFC_00995 5.53e-02 100 AGIAALFC_00996 5.10e-01 100 AGIAALFC_00997 5.35e-01 100 AGIAALFC_01021 5.46e-02 100 AGIAALFC_01040 2.48e-01 100 AGIAALFC_01050 6.97e-01 100 AGIAALFC_01065 5.00e-01 100 AGIAALFC_01066 6.41e-01 100 AGIAALFC_01093 3.66e-01 100 AGIAALFC_01094 2.61e-04 64_[+2(8.78e-08)]_17 AGIAALFC_01163 4.12e-01 100 AGIAALFC_01203 4.88e-01 100 AGIAALFC_01206 4.19e-01 100 AGIAALFC_01218 2.47e-02 100 AGIAALFC_01232 8.21e-01 100 AGIAALFC_01251 1.51e-01 100 AGIAALFC_01286 1.51e-02 100 AGIAALFC_01315 5.80e-01 100 AGIAALFC_01337 5.52e-02 100 AGIAALFC_01356 8.00e-01 100 AGIAALFC_01379 2.57e-01 100 AGIAALFC_01381 9.58e-01 100 AGIAALFC_01382 7.43e-03 100 AGIAALFC_01383 7.02e-01 100 AGIAALFC_01384 8.16e-02 100 AGIAALFC_01385 3.94e-01 100 AGIAALFC_01386 2.82e-01 100 AGIAALFC_01387 2.47e-01 100 AGIAALFC_01413 7.10e-02 100 AGIAALFC_01414 7.12e-01 100 AGIAALFC_01456 8.88e-01 100 AGIAALFC_01495 4.73e-01 100 AGIAALFC_01497 9.44e-01 100 AGIAALFC_01499 4.72e-01 100 AGIAALFC_01527 3.53e-01 100 AGIAALFC_01528 4.21e-06 51_[+2(9.61e-10)]_30 AGIAALFC_01540 2.79e-01 100 AGIAALFC_01543 5.18e-01 100 AGIAALFC_01547 8.56e-01 100 AGIAALFC_01554 9.80e-01 100 AGIAALFC_01566 6.96e-01 100 AGIAALFC_01573 8.04e-01 100 AGIAALFC_01574 6.45e-01 100 AGIAALFC_01590 4.88e-01 100 AGIAALFC_01596 4.13e-01 100 AGIAALFC_01597 7.12e-01 100 AGIAALFC_01598 6.29e-02 100 AGIAALFC_01606 8.27e-01 100 AGIAALFC_01619 6.55e-01 100 AGIAALFC_01622 8.09e-02 100 AGIAALFC_01623 3.57e-01 100 AGIAALFC_01629 5.38e-01 100 AGIAALFC_01639 2.72e-02 100 AGIAALFC_01640 2.08e-01 100 AGIAALFC_01643 1.79e-02 41_[+1(7.88e-05)]_9 AGIAALFC_01650 1.29e-01 100 AGIAALFC_01679 6.20e-02 100 AGIAALFC_01694 4.19e-01 100 AGIAALFC_01716 2.62e-02 66_[+3(2.75e-05)]_26 AGIAALFC_01737 1.15e-01 100 AGIAALFC_01782 9.43e-03 100 AGIAALFC_01789 7.90e-01 100 AGIAALFC_01791 5.25e-01 100 AGIAALFC_01809 3.93e-01 100 AGIAALFC_01826 4.57e-02 100 AGIAALFC_01849 3.82e-06 22_[+2(1.30e-08)]_59 AGIAALFC_01852 5.37e-02 100 AGIAALFC_01882 2.34e-01 100 AGIAALFC_01889 4.93e-01 100 AGIAALFC_01916 6.70e-01 100 AGIAALFC_01933 9.00e-01 100 AGIAALFC_01958 8.74e-01 100 AGIAALFC_01961 5.44e-01 100 AGIAALFC_01995 3.98e-01 100 AGIAALFC_02006 2.17e-06 73_[+2(1.63e-10)]_8 AGIAALFC_02007 9.04e-01 100 AGIAALFC_02010 4.02e-01 100 AGIAALFC_02018 5.94e-01 100 AGIAALFC_02025 2.04e-01 100 AGIAALFC_02056 1.04e-08 61_[+2(1.77e-08)]_20 AGIAALFC_02120 2.40e-01 100 AGIAALFC_02122 6.99e-01 100 AGIAALFC_02167 7.89e-01 100 AGIAALFC_02232 1.09e-01 100 AGIAALFC_02246 1.74e-01 100 AGIAALFC_02299 1.91e-01 100 AGIAALFC_02305 7.67e-01 100 AGIAALFC_02326 9.86e-01 100 AGIAALFC_02333 1.42e-02 88_[+3(2.75e-05)]_4 AGIAALFC_02352 1.81e-01 100 AGIAALFC_02428 9.80e-01 100 AGIAALFC_02519 5.83e-01 100 AGIAALFC_02540 6.88e-01 100 AGIAALFC_02574 3.61e-02 51_[+3(2.75e-05)]_41 AGIAALFC_02582 1.87e-01 100 AGIAALFC_02591 9.78e-01 100 AGIAALFC_02610 3.97e-12 38_[+1(7.85e-16)]_12 AGIAALFC_02646 7.70e-01 100 AGIAALFC_02647 8.74e-01 100 AGIAALFC_02664 9.17e-01 100 AGIAALFC_02683 3.15e-01 100 AGIAALFC_02705 2.29e-01 100 AGIAALFC_02706 8.59e-01 100 AGIAALFC_02707 6.72e-01 100 AGIAALFC_02750 5.98e-01 100 AGIAALFC_02751 9.30e-01 100 AGIAALFC_02757 9.12e-01 100 AGIAALFC_02761 7.33e-01 100 AGIAALFC_02765 3.33e-01 100 AGIAALFC_02786 3.11e-01 100 AGIAALFC_02789 4.52e-01 100 AGIAALFC_02795 5.44e-01 100 AGIAALFC_02802 2.54e-01 100 AGIAALFC_02816 5.84e-01 100 AGIAALFC_02820 5.12e-04 67_[+3(2.75e-05)]_25 AGIAALFC_02854 7.91e-16 26_[+1(2.68e-19)]_24 AGIAALFC_02865 6.18e-01 100 AGIAALFC_02871 2.21e-02 100 AGIAALFC_02910 9.25e-01 100 AGIAALFC_02919 9.90e-01 100 AGIAALFC_02927 5.97e-01 100 AGIAALFC_02968 5.82e-01 100 AGIAALFC_02986 9.13e-01 100 AGIAALFC_02991 6.04e-03 10_[+2(7.54e-06)]_71 AGIAALFC_03070 9.04e-01 100 AGIAALFC_03094 6.45e-01 100 AGIAALFC_03100 5.11e-01 100 AGIAALFC_03126 4.12e-01 100 AGIAALFC_03166 6.69e-02 100 AGIAALFC_03179 8.62e-02 37_[+2(8.65e-05)]_44 AGIAALFC_03225 3.23e-02 100 AGIAALFC_03231 8.16e-01 100 AGIAALFC_03264 2.43e-01 100 AGIAALFC_03313 5.33e-01 100 AGIAALFC_03345 7.86e-01 100 AGIAALFC_03359 9.19e-01 100 AGIAALFC_03407 1.56e-02 43_[+3(1.33e-05)]_49 AGIAALFC_03424 8.09e-01 100 AGIAALFC_03429 4.49e-01 100 AGIAALFC_03433 1.31e-12 26_[+1(1.88e-16)]_24 AGIAALFC_03446 2.84e-01 100 AGIAALFC_03450 3.19e-01 100 AGIAALFC_03468 4.54e-01 100 AGIAALFC_03479 8.73e-01 100 AGIAALFC_03517 7.30e-01 100 AGIAALFC_03573 9.68e-02 100 AGIAALFC_03682 5.90e-01 100 AGIAALFC_03687 6.89e-01 100 AGIAALFC_03704 7.63e-01 100 AGIAALFC_03742 8.69e-01 100 AGIAALFC_03747 8.99e-01 100 AGIAALFC_03825 7.64e-01 100 AGIAALFC_03827 8.08e-01 100 AGIAALFC_03891 9.09e-01 100 AGIAALFC_03895 3.89e-01 100 AGIAALFC_03912 4.42e-01 100 AGIAALFC_03924 5.03e-01 100 AGIAALFC_03939 1.90e-01 100 AGIAALFC_03942 2.76e-01 100 AGIAALFC_03965 5.86e-01 100 AGIAALFC_03981 9.05e-01 100 AGIAALFC_04002 1.47e-01 100 AGIAALFC_04023 6.26e-01 100 AGIAALFC_04028 5.18e-01 100 AGIAALFC_04042 5.61e-01 100 AGIAALFC_04043 6.85e-01 100 AGIAALFC_04058 6.84e-01 100 AGIAALFC_04104 4.45e-01 100 AGIAALFC_04156 3.76e-01 100 AGIAALFC_04176 3.95e-01 100 AGIAALFC_04202 9.63e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************