RID: 1Z7M137M013 Job Title:Protein Sequence Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: Query ID: lcl|Query_6663815 Length: 815 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11044 1657 1657 100% 0.0 100.00 2116 O40955.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376267 1656 1656 100% 0.0 99.88 2116 Q8BCR0.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376264 1654 1654 100% 0.0 99.75 2116 Q99IE5.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376265 1654 1654 100% 0.0 99.75 2116 Q99IE7.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376266 1653 1653 100% 0.0 99.75 2116 Q9J6K9.2 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11045 1652 1652 100% 0.0 99.75 2116 P13889.5 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376262 1648 1648 100% 0.0 99.26 2116 Q6X2U4.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11043 1646 1646 100% 0.0 99.26 2116 Q86500.2 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376263 1645 1645 100% 0.0 99.14 2116 Q6X2U2.1 RecName: Full=Replicase; AltName: Full=237 kDa protein;... Beet necroti... NA 652670 45.8 45.8 30% 8e-05 24.40 2109 Q65667.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 43.9 43.9 30% 3e-04 23.08 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 43.5 43.5 30% 3e-04 24.06 1616 P90211.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 39.3 39.3 12% 0.007 29.82 2512 Q1KZ59.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117114 38.1 38.1 14% 0.014 27.27 993 Q66121.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117113 38.1 38.1 14% 0.015 27.27 993 Q83270.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117124 38.1 38.1 14% 0.015 27.27 993 O40976.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12307 38.1 38.1 14% 0.015 27.27 993 P17769.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 38.1 38.1 22% 0.017 21.20 1629 P89202.2 Alignments: >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus vaccine strain RA27/3] Sequence ID: O40955.1 Length: 2116 Range 1: 1302 to 2116 Score:1657 bits(4291), Expect:0.0, Method:Compositional matrix adjust., Identities:815/815(100%), Positives:815/815(100%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain RN-UK86] Sequence ID: Q8BCR0.1 Length: 2116 Range 1: 1302 to 2116 Score:1656 bits(4288), Expect:0.0, Method:Compositional matrix adjust., Identities:814/815(99%), Positives:815/815(100%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336] Sequence ID: Q99IE5.1 Length: 2116 Range 1: 1302 to 2116 Score:1654 bits(4284), Expect:0.0, Method:Compositional matrix adjust., Identities:813/815(99%), Positives:814/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALAL RDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALVRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336 vaccine] Sequence ID: Q99IE7.1 Length: 2116 Range 1: 1302 to 2116 Score:1654 bits(4282), Expect:0.0, Method:Compositional matrix adjust., Identities:813/815(99%), Positives:815/815(100%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVW+MAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWDMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Cendehill] Sequence ID: Q9J6K9.2 Length: 2116 Range 1: 1302 to 2116 Score:1653 bits(4280), Expect:0.0, Method:Compositional matrix adjust., Identities:813/815(99%), Positives:814/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTG FACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGIFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Therien] Sequence ID: P13889.5 Length: 2116 Range 1: 1302 to 2116 Score:1652 bits(4279), Expect:0.0, Method:Compositional matrix adjust., Identities:813/815(99%), Positives:814/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYER LTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERRLTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain BRD1] Sequence ID: Q6X2U4.1 Length: 2116 Range 1: 1302 to 2116 Score:1648 bits(4268), Expect:0.0, Method:Compositional matrix adjust., Identities:809/815(99%), Positives:813/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNI+VWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIKVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYD+EGE GTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDVEGEHAGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTP+EVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPSEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain M33] Sequence ID: Q86500.2 Length: 2116 Range 1: 1302 to 2116 Score:1646 bits(4262), Expect:0.0, Method:Compositional matrix adjust., Identities:809/815(99%), Positives:812/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALAS+QRPRKGPYNIRVWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASIQRPRKGPYNIRVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPT RSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTGRSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDG LRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGLLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRY RRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYTRRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGAR+AALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARNAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain BRDII] Sequence ID: Q6X2U2.1 Length: 2116 Range 1: 1302 to 2116 Score:1645 bits(4261), Expect:0.0, Method:Compositional matrix adjust., Identities:808/815(99%), Positives:812/815(99%), Gaps:0/815(0%) Query 1 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIRVWNMAAGAGKTTR 60 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNI+VWNMAAGAGKTTR Sbjct 1302 GTCAATDEGLAQAYYDDLEVRRLGDDAMARAALASVQRPRKGPYNIKVWNMAAGAGKTTR 1361 Query 61 ILAAFTREDLYVCPTNALLHEIQAKLRARDIEIKNAATYERALTKPLAAYRRIYIDEAFT 120 ILAAFTREDLYVCPTNALLHEIQAKLRARDI+IKNAATYERALTKPLAAYRRIYIDEAFT Sbjct 1362 ILAAFTREDLYVCPTNALLHEIQAKLRARDIDIKNAATYERALTKPLAAYRRIYIDEAFT 1421 Query 121 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 180 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR Sbjct 1422 LGGEYCAFVASQTTAEVICVGDRDQCGPHYANNCRTPVPDRWPTERSRHTWRFPDCWAAR 1481 Query 181 LRAGLDYDIEGERTGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 240 LRAGLDYD+EGE GTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG Sbjct 1482 LRAGLDYDVEGEHAGTFACNLWDGRQVDLHLAFSRETVRRLHEAGIRAYTVREAQGMSVG 1541 Query 241 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 300 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL Sbjct 1542 TACIHVGRDGTDVALALTRDLAIVSLTRASDALYLHELEDGSLRAAGLSAFLDAGALAEL 1601 Query 301 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 360 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT Sbjct 1602 KEVPAGIDRVVAVEQAPPPLPPADGIPEAQDVPPFCPRTLEELVFGRAGHPHYADLNRVT 1661 Query 361 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 420 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF Sbjct 1662 EGEREVRYMRISRHLLNKNHTEMPGTERVLSAVCAVRRYRAGEDGSTLRTAVARQHPRPF 1721 Query 421 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 480 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ Sbjct 1722 RQIPPPRVTAGVAQEWRMTYLRERIDLTDVYTQMGVAARELTDRYARRYPEIFAGMCTAQ 1781 Query 481 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 540 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII Sbjct 1782 SLSVPAFLKATLKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKII 1841 Query 541 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 600 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG Sbjct 1842 MRALRPQFLVAAGHTEPEVDAWWQAHYTTNAIEVDFTEFDMNQTLATRDVELEISAALLG 1901 Query 601 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 660 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA Sbjct 1902 LPCAEDYRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWA 1961 Query 661 GIFQGDDMVIFLPEGARSAALKWTPAEVGLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHD 720 GIFQGDDMVIFLPEGARSAALKWTP+EVGLFG HIPVKHVSTPTPSFCGHVGTAAGLFHD Sbjct 1962 GIFQGDDMVIFLPEGARSAALKWTPSEVGLFGSHIPVKHVSTPTPSFCGHVGTAAGLFHD 2021 Query 721 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 780 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE Sbjct 2022 VMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAALPDTVAANAAYYDYSAERVLAIVRE 2081 Query 781 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 815 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD Sbjct 2082 LTAYARGRGLDHPATIGALEEIQTPYARANLHDAD 2116 >RecName: Full=Replicase; AltName: Full=237 kDa protein; Contains: RecName: Full=Replicase large subunit; AltName: Full=150 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=66 kDa protein; AltName: Full=RdRp [Beet necrotic yellow vein virus S] Sequence ID: Q65667.1 Length: 2109 Range 1: 1758 to 1995 Score:45.8 bits(107), Expect:8e-05, Method:Compositional matrix adjust., Identities:61/250(24%), Positives:94/250(37%), Gaps:20/250(8%) Query 492 LKCVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKIIMRALRPQFLVA 551 LK ++ L +T+ A QG I AW+KE FR + +++++L + Sbjct 1758 LKDIEKPLKDPETDLAKAGQG-----ILAWSKEAHVKFMVAFRVLNDLLLKSLNSNVVYD 1812 Query 552 AGHTEPEVDAWWQAHYTT---NAIE--VDFTEFDMNQTLATRDVELEISAALLGLPCAED 606 +E E A +AI +D D Q + T+ +E I AAL D Sbjct 1813 NTMSETEFVGKINAAMNIVPDSAINGVIDAAACDSGQGVFTQLIERHIYAALGISDFFLD 1872 Query 607 YRALRAGSYCTLRELGSTETGCERTSGEPATLLHNTTVAMCMAMRMVPKGVRWAGIFQGD 666 + Y +TSGEP TLL NT + M M+ + +GD Sbjct 1873 WYFSFREKYVMQSRYVRAHMSYVKTSGEPGTLLGNTILMGAMLNAMLRGTGPFCMAMKGD 1932 Query 667 DMVIFLPEGARSAALKWTPAEVGLFGFHIPVKH---VSTPTPSFCGHVGTAAGLFHDVMH 723 D R A LK + L + ++ P +FCG+ + LF V Sbjct 1933 DGF------KRQANLKINDQMLKLIKKETVLDFKLDLNVPI-TFCGYALSNGHLFPSVSR 1985 Query 724 QAIKVLCRRF 733 + K+ RF Sbjct 1986 KLTKIAAHRF 1995 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1521 to 1757 Score:43.9 bits(102), Expect:3e-04, Method:Compositional matrix adjust., Identities:60/260(23%), Positives:99/260(38%), Gaps:35/260(13%) Query 528 VMSPHFRAIQKIIMRALRPQFLVAAGHTEPEVD---AWWQAHYTTNAIEVDFTEFDMNQT 584 + P + I + I AL+P + T E+D + ++E+DF++FD ++T Sbjct 1521 LFGPIMKEINERIRVALKPHVIYNTRMTSDELDPAVEFLDVREDHESVEIDFSKFDKSKT 1580 Query 585 LATRDVELEISAALLGLPCAEDYRALRAGSYCTLRELGS---TETGCERTSGEPATLLHN 641 V +E+ L GL Y ++ T+++ + + ++ SG T N Sbjct 1581 SLHIRVVIEL-YKLFGLDEMIAYLWEKSQCQTTIKDRVNGIIAQILYQQESGNCDTYGSN 1639 Query 642 TTVAMCMAMRMVPKGVRWAGIFQGDDMVIFLPEG------ARSAALKWTPAEVGLFGFHI 695 T A + +P IF GDD +IF P+G R A W + LF F Sbjct 1640 TWSAALSLLESLPLEKATFMIFGGDDSLIFFPKGMVIEDPCRRLASMWN-FDCKLFNF-- 1696 Query 696 PVKHVSTPTPSFCGHVGTAAGLFHDVMHQAIKVLCRRFDPDVLEEQQVALLDRLRGVYAA 755 SFCG G + K+L + L + + D L ++ + Sbjct 1697 -------KNNSFCGKFLIKVGEKYKFAPDPYKLLTK------LGRKDIKNSDLLSEIFTS 1743 Query 756 LPDTVAANAAYYDYSAERVL 775 + D Y Y RVL Sbjct 1744 IGDN------YKSYDDYRVL 1757 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1334 to 1577 Score:43.5 bits(101), Expect:3e-04, Method:Compositional matrix adjust., Identities:64/266(24%), Positives:112/266(42%), Gaps:42/266(15%) Query 522 AKEWVQVMSPHFRAIQKIIMRAL-RPQFLVAAGHTEPEVDAWWQ---AHYTTNAIEVDFT 577 +K+ + P F + + ++ A+ ++L T +++ ++ AH +E+D + Sbjct 1334 SKKINALFGPIFSELTRQMLSAIDTSRYLFFTRKTPEQIEEFFSDLDAHQPMEVLELDVS 1393 Query 578 EFDMNQTLATRDVELEISAAL-LGLPCAEDYRALRAGSYCTLRELGSTETGC---ERTSG 633 ++D +Q VE EI L + AE ++ + TL++ + C +R SG Sbjct 1394 KYDKSQNEFHCAVEYEIWKRLGIDEFLAEVWK--QGHRKTTLKDYTAGIKTCLWYQRKSG 1451 Query 634 EPATLLHNTTV-AMCMAMRMVPKGVRWAGIFQGDDMVIFLPEGAR------SAALKWTPA 686 + T + NT + A CMA M+P F GDD +++LP+G A L W Sbjct 1452 DVTTFIGNTVIIAACMA-SMLPMEKVIKAAFCGDDSLVYLPKGCELPNIQSCANLMWN-F 1509 Query 687 EVGLFGFHIPVKHVSTPTPSFCG----HVGTAAGLFHDVMHQAIKVLCRRF-DPDVLEEQ 741 E LF FCG H A ++ D + K+ + D + LEE Sbjct 1510 EAKLF---------KKTYGYFCGRYVIHHDRGAIVYVDPLKIISKLGAKHITDKEHLEEF 1560 Query 742 QVALLDRLRGVYAALPDTVAANAAYY 767 +++L D + + N AYY Sbjct 1561 RISLADVSKSL---------NNCAYY 1577 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 1557 to 1669 Score:39.3 bits(90), Expect:0.007, Method:Composition-based stats., Identities:34/114(30%), Positives:48/114(42%), Gaps:18/114(15%) Query 49 WNMA-AGAGKTTRILAAFTREDLYVCPTNALLHEIQAKLRAR--DIEIKNAATYERALTK 105 W A AGAGKTT ++ F DL VCPT I+ +++ R D++ K R + Sbjct 1557 WVQAVAGAGKTTLLVETFLITDLVVCPTVENRDSIRLRIKRRYPDLDPKEVDCRVRTING 1616 Query 106 PLAAYR------------RIYIDEAFTLGGEYCAFVASQ--TTAEVICVGDRDQ 145 L + R+ +DEA C FV + CVGD+ Q Sbjct 1617 YLVDFSTKLAKVTLNENTRLLVDEAIMYHAG-CLFVLCMIYNIRRMFCVGDKKQ 1669 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66121.1 Length: 993 Range 1: 694 to 813 Score:38.1 bits(87), Expect:0.014, Method:Compositional matrix adjust., Identities:33/121(27%), Positives:52/121(42%), Gaps:8/121(6%) Query 32 ALASVQRPRKGPY-NIRVWNMAAGAGKTTRILAAFT-REDLYVCPTNALLHEIQAKLRAR 89 +L++V R + P I + AG GKTT I + F D+ V +++ L + Sbjct 694 SLSNVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMVVTANKKSAQDVRMAL-FK 752 Query 90 DIEIKNAATYER----ALTKPLAAYRRIYIDEAFTLG-GEYCAFVASQTTAEVICVGDRD 144 + K A T+ R L R+ +DE L G+ CA ++ IC GD + Sbjct 753 SSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE 812 Query 145 Q 145 Q Sbjct 813 Q 813 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83270.1 Length: 993 Range 1: 694 to 813 Score:38.1 bits(87), Expect:0.015, Method:Compositional matrix adjust., Identities:33/121(27%), Positives:52/121(42%), Gaps:8/121(6%) Query 32 ALASVQRPRKGPY-NIRVWNMAAGAGKTTRILAAFT-REDLYVCPTNALLHEIQAKLRAR 89 +L++V R + P I + AG GKTT I + F D+ V +++ L + Sbjct 694 SLSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMAL-FK 752 Query 90 DIEIKNAATYER----ALTKPLAAYRRIYIDEAFTLG-GEYCAFVASQTTAEVICVGDRD 144 + K A T+ R L R+ +DE L G+ CA ++ IC GD + Sbjct 753 SSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE 812 Query 145 Q 145 Q Sbjct 813 Q 813 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain NT9)] Sequence ID: O40976.1 Length: 993 Range 1: 694 to 813 Score:38.1 bits(87), Expect:0.015, Method:Compositional matrix adjust., Identities:33/121(27%), Positives:52/121(42%), Gaps:8/121(6%) Query 32 ALASVQRPRKGPY-NIRVWNMAAGAGKTTRILAAFT-REDLYVCPTNALLHEIQAKLRAR 89 +L++V R + P I + AG GKTT I + F D+ V +++ L + Sbjct 694 SLSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMAL-FK 752 Query 90 DIEIKNAATYER----ALTKPLAAYRRIYIDEAFTLG-GEYCAFVASQTTAEVICVGDRD 144 + K A T+ R L R+ +DE L G+ CA ++ IC GD + Sbjct 753 SSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE 812 Query 145 Q 145 Q Sbjct 813 Q 813 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain FNY)] Sequence ID: P17769.2 Length: 993 Range 1: 694 to 813 Score:38.1 bits(87), Expect:0.015, Method:Compositional matrix adjust., Identities:33/121(27%), Positives:52/121(42%), Gaps:8/121(6%) Query 32 ALASVQRPRKGPY-NIRVWNMAAGAGKTTRILAAFT-REDLYVCPTNALLHEIQAKLRAR 89 +L++V R + P I + AG GKTT I + F D+ V +++ L + Sbjct 694 SLSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMAL-FK 752 Query 90 DIEIKNAATYER----ALTKPLAAYRRIYIDEAFTLG-GEYCAFVASQTTAEVICVGDRD 144 + K A T+ R L R+ +DE L G+ CA ++ IC GD + Sbjct 753 SSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE 812 Query 145 Q 145 Q Sbjct 813 Q 813 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1399 to 1577 Score:38.1 bits(87), Expect:0.017, Method:Compositional matrix adjust., Identities:39/184(21%), Positives:77/184(41%), Gaps:13/184(7%) Query 572 IEVDFTEFDMNQTLATRDVELEISAALLGLPCAEDYRALRAGSYCTLRELGS---TETGC 628 +E+D +++D +Q +VE+ I +LG+ + LR+ + T Sbjct 1399 LELDISKYDKSQNKFHFEVEMRI-WEMLGIDKYIEKVWENGHRKTHLRDYTAGIKTVIEY 1457 Query 629 ERTSGEPATLLHNTTVAMCMAMRMVPKGVRWAGIFQGDDMVIFLPEGARSAALKWTPAEV 688 +R SG+ T + NT + ++P + F GDD +I+LP ++ + Sbjct 1458 QRKSGDVTTFIGNTIIIAACLCSILPMEKVFKAGFCGDDSIIYLPRNLLYPDIQSVSNNM 1517 Query 689 GLFGFHIPVKHVSTPTPSFCGHVGTAAGLFHDVMHQAIKVL----CRRF-DPDVLEEQQV 743 ++ K FCG G + ++ +K++ C+ D D LEE ++ Sbjct 1518 ----WNFEAKLFKKLHGYFCGRYXLRNGRYLRLLPDPLKIITKLGCKAIKDWDHLEEFRI 1573 Query 744 ALLD 747 ++ D Sbjct 1574 SMFD 1577