BLAST searches

Table 1. Homologue search

Number of finds	Finds with E-value < 0.001	max E-value
36	35	9.1

For this search the maximum number of finds was set to 100, therefore, this number was limited by E-value, which threshold was set to 10.

Table 2. Homologue search (word size = 2)

Number of finds	Finds with E-value < 0.001	max E-value
60	48	9.1

Table 3. Homologue search (organism = proteobacteria)

Number of finds	Finds with E-value < 0.001	max E-value
16	12	7.9

The E-value of the chosen find (P26464.3) has decreased (from 1e-24 to 3e-25) after specifying the taxonomy, because it depends on the size of the seqences data base. Score doesn't depend on that size, so it doesnt change with the database.