FastQCFastQC Report
آْ 15 لمي 2015
chr20.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamechr20.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4661
Sequences flagged as poor quality0
Sequence length30-100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATCCCTACCCTTTGCCCCCACCCAGAGGATCCGGTGGCTCCCCACCGA60.12872774082814847No Hit
ATGGATACTAAATTCAAGGATGACTTATTTCGGAAGTACGTGCAGTTCCA50.10727311735679039No Hit
TCCACAATTAGAAATTCTACTTTTTCTTCGTTAGGGTTAAAGAAAAAAAA50.10727311735679039No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.4)