TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= RS2_YEAST P25443 40S ribosomal protein S2
{ECO:0000303|PubMed:9559554} (Omnipotent suppressor protein SUP44)
(RP12) (S4) (Small ribosomal subunit protein uS5
{ECO:0000303|PubMed:24524803}) (YS5)

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-51                                                         287     6e-89
  scaffold-104                                                        287     6e-89


> scaffold-51
Length=57241

 Score = 287 bits (734),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 0/211 (0%)
 Frame = -3

Query  31     EEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQT  90
              E+K WVPVTKLGRLVK GKI ++EE++L SLP+KE+QIID  LP L+DEVM+I PVQKQT
Sbjct  24491  EDKEWVPVTKLGRLVKEGKIRSLEELYLFSLPIKEYQIIDHFLPNLKDEVMSIMPVQKQT  24312

Query  91     RAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVagairagiiiaKLSVIPIRRGYWGTNLGQ  150
               AGQRTRFKA V+VGD NGHVGLG+K AKEVA AIR  II+AKL+V+P+RRGYWGT LG 
Sbjct  24311  TAGQRTRFKAFVIVGDMNGHVGLGVKCAKEVATAIRGAIILAKLAVVPVRRGYWGTILGD  24132

Query  151    PHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENT  210
              PH++  K TGKCGSV  RL+PAPRG+ IVA+P  KKLLQ AG++D YT + G TRT  N 
Sbjct  24131  PHTVPAKVTGKCGSVLCRLVPAPRGTSIVAAPTAKKLLQFAGIQDCYTTARGSTRTQGNF  23952

Query  211    LKAAFVAIGNTYGFLTPNLWAEQPLPVSPLD  241
              LKA F+AI NTY +LTP+LW    L  +PLD
Sbjct  23951  LKATFMAIKNTYAYLTPDLWQATELITNPLD  23859


> scaffold-104
Length=736462

 Score = 287 bits (734),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 0/211 (0%)
 Frame = -1

Query  31      EEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQT  90
               E+K WVPVTKLGRLVK GKI ++EE++L SLP+KE+QIID  LP L+DEVM+I PVQKQT
Sbjct  361585  EDKEWVPVTKLGRLVKEGKIRSLEELYLFSLPIKEYQIIDHFLPNLKDEVMSIMPVQKQT  361406

Query  91      RAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVagairagiiiaKLSVIPIRRGYWGTNLGQ  150
                AGQRTRFKA V+VGD NGHVGLG+K AKEVA AIR  II+AKL+V+P+RRGYWGT LG 
Sbjct  361405  TAGQRTRFKAFVIVGDMNGHVGLGVKCAKEVATAIRGAIILAKLAVVPVRRGYWGTILGD  361226

Query  151     PHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENT  210
               PH++  K TGKCGSV  RL+PAPRG+ IVA+P  KKLLQ AG++D YT + G TRT  N 
Sbjct  361225  PHTVPAKVTGKCGSVLCRLVPAPRGTSIVAAPTAKKLLQFAGIQDCYTTARGSTRTQGNF  361046

Query  211     LKAAFVAIGNTYGFLTPNLWAEQPLPVSPLD  241
               LKA F+AI NTY +LTP+LW    L  +PLD
Sbjct  361045  LKATFMAIKNTYAYLTPDLWQATELITNPLD  360953



Lambda      K        H        a         alpha
   0.315    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1233672374


  Database: X5.fasta
    Posted date:  Nov 10, 2021  1:52 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40