RID: 93PBSZTY013 Job Title:POLN_EEVVC Q8V294 Polyprotein P1234 OS=Venezuelan... Program: BLASTP Query: POLN_EEVVC Q8V294 Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain CPA201) OX=376610 PE=3 SV=3 ID: lcl|Query_97472(amino acid) Length: 607 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 1261 1261 100% 0.0 100.00 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 1252 1252 100% 0.0 99.34 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 1171 1171 100% 0.0 94.73 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 1171 1171 100% 0.0 94.73 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 1170 1170 100% 0.0 94.73 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 991 991 100% 0.0 77.47 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 983 983 100% 0.0 78.62 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 982 982 100% 0.0 78.29 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 976 976 100% 0.0 78.95 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 915 915 100% 0.0 72.16 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 910 910 100% 0.0 72.53 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 909 909 100% 0.0 72.53 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 907 907 100% 0.0 71.71 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 906 906 100% 0.0 72.32 2515 P27283.2 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 904 904 100% 0.0 71.05 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 904 904 100% 0.0 72.16 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 904 904 100% 0.0 71.38 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 902 902 100% 0.0 71.22 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 902 902 100% 0.0 70.89 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 897 897 100% 0.0 70.39 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 895 895 100% 0.0 70.23 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 894 894 100% 0.0 69.03 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 894 894 100% 0.0 70.07 2467 Q9JGL0.3 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 887 887 100% 0.0 69.85 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 876 876 100% 0.0 70.07 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 672 672 99% 0.0 54.28 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 668 668 99% 0.0 54.11 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 82.4 82.4 70% 6e-15 25.34 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 79.3 79.3 71% 4e-14 24.89 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 73.2 73.2 69% 5e-12 24.20 1616 P90211.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 72.4 72.4 78% 8e-12 22.63 2512 Q1KZ59.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 70.1 70.1 65% 4e-11 25.12 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 69.7 69.7 65% 4e-11 25.37 1616 Q98745.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=Gamma... Barley strip... NA 12327 69.3 69.3 69% 5e-11 24.71 771 Q80873.1 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 69.7 69.7 74% 6e-11 23.82 1707 Q9J942.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 69.3 69.3 70% 7e-11 25.88 1612 P29098.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 68.9 68.9 70% 8e-11 25.88 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 68.9 68.9 65% 8e-11 25.12 1616 Q9YQ08.1 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 68.9 68.9 74% 8e-11 23.82 1707 P05080.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 68.6 68.6 65% 1e-10 25.12 1616 P30738.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Tomato asper... NA 12315 67.4 67.4 76% 2e-10 23.11 828 P29035.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 67.4 67.4 65% 2e-10 25.12 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 67.0 67.0 65% 3e-10 24.88 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 67.0 67.0 65% 3e-10 24.88 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 67.0 67.0 65% 4e-10 24.88 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 66.6 66.6 69% 4e-10 24.77 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 66.2 66.2 68% 6e-10 21.36 1672 Q84687.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 66.2 66.2 65% 6e-10 23.79 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 65.9 65.9 71% 8e-10 24.03 1612 Q84133.2 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Grapevine le... NA 651354 65.9 65.9 65% 8e-10 24.75 2772 O71189.3 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 65.1 65.1 29% 1e-09 29.78 822 P03594.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 63.2 63.2 71% 5e-09 24.13 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 63.2 63.2 50% 6e-09 23.96 1648 P69514.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Peanut stunt... NA 12314 62.8 62.8 74% 6e-09 24.04 834 P28727.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 61.6 61.6 50% 1e-08 26.21 3094 Q08534.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117114 61.2 61.2 75% 2e-08 24.24 858 Q66117.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 59.7 59.7 58% 5e-08 22.31 808 P20179.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Pelargonium ... NA 650488 57.8 57.8 60% 2e-07 23.95 687 Q9DUT2.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 57.4 57.4 70% 3e-07 23.33 1629 P89202.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117113 57.0 57.0 75% 4e-07 23.05 857 Q83262.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117124 56.6 56.6 75% 4e-07 23.83 857 O40977.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117115 56.6 56.6 75% 4e-07 23.83 858 Q86783.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117122 56.6 56.6 75% 5e-07 23.11 857 Q66145.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12307 56.2 56.2 60% 6e-07 24.62 857 P16490.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117119 56.2 56.2 75% 6e-07 23.42 857 Q66136.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Alfalfa mosa... NA 12322 55.5 55.5 36% 9e-07 24.68 790 P03593.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 55.5 55.5 67% 1e-06 25.41 1609 P18339.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117116 55.1 55.1 60% 1e-06 24.36 857 Q96711.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12312 55.1 55.1 60% 1e-06 24.36 857 Q83265.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Olive latent... NA 650489 53.5 53.5 61% 4e-06 24.81 787 Q83944.1 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 52.0 52.0 62% 2e-05 22.19 1694 Q05983.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73473 51.2 51.2 45% 2e-05 24.16 1884 P27738.1 RecName: Full=Replicase large subunit [Tobacco rattle virus-PSG] Tobacco ratt... NA 12297 47.0 47.0 22% 9e-05 30.28 179 P05079.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 47.8 47.8 45% 3e-04 23.83 1885 P54891.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 45.8 45.8 64% 0.001 22.52 1812 Q9QBU0.3 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Broad bean m... NA 12301 45.4 45.4 27% 0.001 26.90 810 P27462.1 RecName: Full=RNA replication protein; AltName: Full=ORF 1... Chrysanthemu... NA 12165 42.7 42.7 24% 0.005 27.89 260 P37987.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Cucumber gre... NA 12237 40.8 40.8 14% 0.008 34.04 153 P69515.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12310 42.7 42.7 77% 0.009 22.45 839 P06012.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 509627 42.4 42.4 23% 0.012 28.08 1707 Q9IVZ9.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Lettuce infe... NA 651355 42.4 42.4 28% 0.013 23.43 2379 Q83045.2 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 42.4 42.4 71% 0.013 21.72 1828 Q89249.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:1261 bits(3263), Expect:0.0, Method:Compositional matrix adjust., Identities:607/607(100%), Positives:607/607(100%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2010 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP Sbjct 2011 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2070 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY Sbjct 2071 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2130 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK Sbjct 2131 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2190 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2191 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2250 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK Sbjct 2251 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2310 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD Sbjct 2311 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2370 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE Sbjct 2371 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2430 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG Sbjct 2431 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 2490 Query 601 APIALYG 607 APIALYG Sbjct 2491 APIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:1252 bits(3240), Expect:0.0, Method:Compositional matrix adjust., Identities:603/607(99%), Positives:604/607(99%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2012 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP Sbjct 2013 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2072 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY Sbjct 2073 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2132 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK Sbjct 2133 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2192 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2193 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2252 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK Sbjct 2253 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2312 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD Sbjct 2313 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2372 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE Sbjct 2373 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2432 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSV SF LRG Sbjct 2433 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLRG 2492 Query 601 APIALYG 607 API+LYG Sbjct 2493 APISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:1171 bits(3030), Expect:0.0, Method:Compositional matrix adjust., Identities:575/607(95%), Positives:592/607(97%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLD KEE+LRKKLQLNPT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 RSRYQSRRVENMKAIT +RILQGLGHYLK+EGKVECYRTLHPVPLYS+SVNRAFSSPKVA Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 VEACN +LKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKH+YLEP Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET+ Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 K+NPIRLTEENVVNYITKLKGPKAAAL+AKTHNL+MLQDIPMDRF+MDLKRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAADPLATA LCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2187 HTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 QPGD VLETDIASFDKSEDDAMALTALMILEDLGVD ELLTLIEAAFGEISSIHLPTKTK Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTVIN+VIASRVLRERLT SPCAAFIGDDNIVKGVKSDKLMAD Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2426 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 HDDDRRRAL EES RWNRVGI ELCKAVESRYETVGT++I+MAMTTLASSV+SFS LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 APIALYG 607 API LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:1171 bits(3029), Expect:0.0, Method:Compositional matrix adjust., Identities:575/607(95%), Positives:593/607(97%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLD KEE+LRKKLQLNPT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 RSRYQSR+VENMKAIT +RILQGLGHYLK+EGKVECYRTLHPVPLYS+SVNRAFSSPKVA Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 VEACN +LKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKH+YLEP Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET+ Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 K+NPIRLTEENVVNYITKLKGPKAAAL+AKTHNL+MLQDIPMDRF+MDLKRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2187 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 QPGD VLETDIASFDKSEDDAMALTALMILEDLGVD ELLTLIEAAFGEISSIHLPTKTK Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTVIN+VIASRVLRERLT SPCAAFIGDDNIVKGVKSDKLMAD Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLA DDE Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2426 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 HDDDRRRAL EES RWNRVGI SELCKAVESRYETVGT++I+MAMTTLASSV+SFS LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 APIALYG 607 API LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:1170 bits(3028), Expect:0.0, Method:Compositional matrix adjust., Identities:575/607(95%), Positives:592/607(97%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLD KEE+LRKKLQLNPT AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 RSRYQSRRVENMKAIT +RILQGLGHYLK+EGKVECYRTLHPVPLYS+SVNRAFSSPKVA Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 1998 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 VEACN +LKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKH+YLEP Sbjct 1999 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2058 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET+ Sbjct 2059 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2118 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 K+NPIRLTEENVVNYITKLKGPKAAAL+AKTHNL+MLQDIPMDRF+MDLKRDVKVTPGTK Sbjct 2119 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2178 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2179 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2238 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 QPGD VLETDIASFDKSEDDAMALTALMILEDLGVD ELLTLIEAAFGEISSIHLPTKTK Sbjct 2239 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2298 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTVIN+VIASRVLRERLT SPCAAFIGDDNIVKGVKSDKLMAD Sbjct 2299 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2358 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLA DDE Sbjct 2359 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2418 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 HDDDRRRAL EES RWNRVGI ELCKAVESRYETVGT++I+MAMTTLASSV+SFS LRG Sbjct 2419 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2478 Query 601 APIALYG 607 API LYG Sbjct 2479 APITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:991 bits(2562), Expect:0.0, Method:Compositional matrix adjust., Identities:471/608(77%), Positives:535/608(87%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSS+TGQGHLQQKSVRQ L E +L+R E YAPRLDL +E++L+KKLQL ++ N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKAIT +R++ GLG YL SE VECYR +PVP+YS++V F+S +V Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEV 1979 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV+ CN+V++EN+PTVASYCI EYDAYLDMVDGASCCLDTA+FCPAKLRS+PKKH+YL+ Sbjct 1980 AVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQ 2039 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS IQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV+CFKKYACN+EYW+T Sbjct 2040 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDT 2099 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 ++ NPIRLT ENV Y+TKLKGPKAAAL+A THNL LQ+IPMD+F+MDLKRDVKVTPGT Sbjct 2100 FRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGT 2159 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH Sbjct 2160 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2219 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F GD VLETDIASFDKSEDDA+A++ALMILEDLGVD LL LIEAAFG I+S+HLPT T Sbjct 2220 FHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGT 2279 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N++IASRVLRERLT S CAA IGDDNIV GV SD LMA Sbjct 2280 RFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMA 2339 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCATWLNMEVKIIDAV+G KAPYFCGGFIL D +TGTACRVADPLKRLFKLGKPL VDD Sbjct 2340 ERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDD 2399 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D DRRRAL +E+ RWNR+GI EL KAVESRYE + +II +++TLA SV++F +R Sbjct 2400 TQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIR 2459 Query 600 GAPIALYG 607 G+PI LYG Sbjct 2460 GSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:983 bits(2540), Expect:0.0, Method:Compositional matrix adjust., Identities:478/608(79%), Positives:536/608(88%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSS+TGQGHLQQKS RQ L +LER+ E YAPRLDL +E++L+KKLQL ++ N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGK-VECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKAIT +R+LQG+G YL +E + VECY+ +PVP+YS + + FSS V Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKVNYPVPIYSTTRSNRFSSADV 1986 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN+VL+ENFPTVASY I EYDAYLDMVDGASCCLDTA+FCPAKLRSFPKKH+YL Sbjct 1987 AVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2046 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS IQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACN+EYW+T Sbjct 2047 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDT 2106 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K NPIRLT ENV Y+TKLKGPKAAAL+AKTHNL L +IPMDRF+MDLKRDVKVTPGT Sbjct 2107 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2166 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH Sbjct 2167 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2226 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQ GD VLETDIASFDKSEDDA+A++ALMILEDLGVD LL LIEAAFG I+S+HLPT T Sbjct 2227 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2286 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NTV+N++IASRVLRERLTNSPCAAFIGDDNIVKGVKSD LMA Sbjct 2287 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2346 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCATWLNMEVKIIDA VG KAPYFCGGFI+ D VTGTACRVADPLKRLFKLGKPL +DD Sbjct 2347 ERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPLDD 2406 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 + D DRRRAL +E+ RWNR+GI EL KAVESRYE +++I A+TTLA++V +F +R Sbjct 2407 DQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKYIR 2466 Query 600 GAPIALYG 607 G PI LYG Sbjct 2467 GNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:982 bits(2538), Expect:0.0, Method:Compositional matrix adjust., Identities:476/608(78%), Positives:539/608(88%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSS+TGQGHLQQKS RQ L +LER+ E YAPRLDL +E++L++KLQL ++ N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGK-VECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKAIT +R+LQG+G YL +E + VECY+ +PVP+YS + + FSS V Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKINYPVPVYSTTRSNRFSSADV 1983 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN+V++ENFPTVASY I EYDAYLDMVDGASCCLDTA+FCPAKLRSFPKKH+YL+ Sbjct 1984 AVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLK 2043 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS IQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACN+EYWET Sbjct 2044 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWET 2103 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K NPIRLT ENV Y+TKLKGPKAAAL+AKTHNL L +IPMDRF+MDLKRDVKVTPGT Sbjct 2104 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2163 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH Sbjct 2164 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2223 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQ GD VLETDIASFDKSEDDA+A++ALMILEDLGVD LL LIEAAFG I+S+HLPT T Sbjct 2224 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2283 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NTV+N++IASRVLRERLTNSPCAAFIGDDNIVKGVKSD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2343 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCATWLNMEVKIIDAVVG KAPYFCGGFI+ D +TGTACRVADPLKRLFKLGKPL +DD Sbjct 2344 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2403 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 + D DRRRAL +E+ RWNR+GI EL KAVESRY+ + +++I A++TLA++V +F +R Sbjct 2404 DQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKHIR 2463 Query 600 GAPIALYG 607 G PI LYG Sbjct 2464 GNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:976 bits(2523), Expect:0.0, Method:Compositional matrix adjust., Identities:480/608(79%), Positives:538/608(88%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSS+TGQGHLQQKS RQ L +LER+ E YAPRLDL +E++L+KKLQL ++ N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGK-VECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKAIT +R+LQG+G YL +E + VECY+ +P P+YS++ + +FSS +V Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTYPAPMYSSTASNSFSSAEV 2006 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV+ CN+VL+ENFPTVASY I EYDAYLDMVDGASCCLDTA+FCPAKLRSFPKKH+YL Sbjct 2007 AVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2066 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS IQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACN+EYW+ Sbjct 2067 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDF 2126 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 YK NPIRLT ENV Y+TKLKGPKAAAL+AKTHNL L +IPMDRF+MDLKRDVKVTPGT Sbjct 2127 YKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2186 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH Sbjct 2187 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2246 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQ GD VLETDIASFDKSEDDA+A++ALMILEDLGVD LL LIEAAFG I+S+HLPT T Sbjct 2247 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPTGT 2306 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NTV+N++IASRVLRERLT SPCAAFIGDDNIVKGV SD LMA Sbjct 2307 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDALMA 2366 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCATWLNMEVKIIDAVVG KAPYFCGGFI+ D +TGTACRVADPLKRLFKLGKPL +DD Sbjct 2367 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2426 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 + D DRRRAL +E+ARWNR+GI EL KAVESRYE ++II A+TTLASSV +F +R Sbjct 2427 DQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKHIR 2486 Query 600 GAPIALYG 607 G PI LYG Sbjct 2487 GHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2496 Score:915 bits(2365), Expect:0.0, Method:Compositional matrix adjust., Identities:438/607(72%), Positives:509/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LDL KEE+L+ + Q++PT AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRYQSR+VENMKA+TT R+L GL Y+ + + ECY+ +P P+YSASV F SP+VA Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 2009 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK H+YLEP Sbjct 2010 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 2069 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE + Sbjct 2070 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 2129 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 K+ PIR+T E V +Y+ +LKGP+AAAL+AKTH L LQ++PMDRF+MD+KRDVKVTPGTK Sbjct 2130 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 2189 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2190 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 2249 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2250 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 2309 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTV+N+VIASRVL +RL +S CAAFIGDDNI+ GV SDK+MAD Sbjct 2310 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 2369 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL VDDE Sbjct 2370 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 2429 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 D DRRRAL++E+ W RVGI EL KAVESRYE +++A+ T + S ++F LRG Sbjct 2430 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 2489 Query 601 APIALYG 607 +P LYG Sbjct 2490 SPRHLYG 2496 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2471 Score:910 bits(2351), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:501/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD KE++L KKLQ + + AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA +R+ G YL SE KV YRT +P P+YS +N S+P+ Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 1983 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 1984 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2043 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2044 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 2103 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2224 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 2283 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 2343 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLA D Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 2403 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 E DDDRRRAL +E RW R G+ EL KAV SRYE G +V++M+M T ASS +F LR Sbjct 2404 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 600 GAPIALYG 607 G + LYG Sbjct 2464 GPVVTLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2471 Score:909 bits(2350), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:501/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSVRQ+VL LE E Y P+LD KE++L KKLQ + + AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA +R+ +G YL SE KV YRT +P P+YS +N S+P+ Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTYPAPVYSPPINVRLSNPES 1983 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L N+PTV+SY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+HAY Sbjct 1984 AVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAYHA 2043 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P+IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYWE Sbjct 2044 PSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWEE 2103 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2224 FKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPTGT 2283 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDELMA 2343 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D VTGTACRVADPLKRLFKLGKPLA D Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAAGD 2403 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 E D+DRRRAL +E RW R G+ EL KAV SRYE G +V++M+M T ASS +F LR Sbjct 2404 EQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 600 GAPIALYG 607 G + LYG Sbjct 2464 GPVVTLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2510 Score:907 bits(2345), Expect:0.0, Method:Compositional matrix adjust., Identities:436/608(72%), Positives:498/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQT L ++E E Y P+LD KE++L K+LQ + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA R+ +G YL S+ +V YR +P P+YS S+N S+P+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSINIKLSNPET 2022 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN L N+PTVASY + EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFKKYACN EYW Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF MD+KRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2262 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++ALTA+M+LEDLGVD +L LIEAAFGEISS HLPT T Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNI+ GV SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 RCATW+NMEVKIIDAVV EKAPYFCGGFIL D+VTGT+CRVADPLKRLFKLGKPLA D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 E D+DRRRAL +E RW R G+ +EL KAV SRYE G +I +M T ASS E+F LR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 600 GAPIALYG 607 G + LYG Sbjct 2503 GPVVTLYG 2510 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2512 Score:906 bits(2342), Expect:0.0, Method:Compositional matrix adjust., Identities:439/607(72%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFS+DTG GHLQ KSV Q L+E LER LE YAP LD +KEE L+ + Q+ PT+AN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRYQSR+VEN KAITT+R+L GL Y + + ECY+ +P P YS+SV +S PK A Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITYPKPSYSSSVAANYSDPKFA 2025 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 V CN L EN+PTVASY I EYDAYLDMVDG CLDTA+FCPAKLRS+PK+H Y P Sbjct 2026 VAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYRAP 2085 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 IRSAVPSA+QNTLQNVL AATKRNCNVTQMRELP LDSA FNVECF+KYACN+EYWE + Sbjct 2086 NIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEEF 2145 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 + PIR+T E V Y+ +LKGPKAAAL+AKTHNL LQ++PMDRF+MD+KRDVKVTPGTK Sbjct 2146 ARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGTK 2205 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2206 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEHF 2265 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 + GD VLETDIASFDKS+DDAMALT LMILEDLGVD LL LIE AFGEISS HLPT T+ Sbjct 2266 KQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGTR 2325 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTV+N+VIASRVL ERL S CAAFIGDDNI+ GV SDK MA+ Sbjct 2326 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEMAE 2385 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAV+GE+ PYFCGGFIL DSVT TACRVADPLKRLFKLGKPL DDE Sbjct 2386 RCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADDE 2445 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 D+DRRRAL +E+ W RVGI L AV +RYE +++A+ T A S +F +RG Sbjct 2446 QDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAIRG 2505 Query 601 APIALYG 607 LYG Sbjct 2506 EIKHLYG 2512 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1146 Score:904 bits(2337), Expect:0.0, Method:Compositional matrix adjust., Identities:432/608(71%), Positives:503/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD +E++L+ K+Q+ PT+AN Sbjct 539 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 598 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 599 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 658 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 659 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 718 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 719 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 778 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K NPIR+T EN+ Y+T+LKGPKAAAL+AKTHNL LQ++PMDRF++D+KRDVKVTPGT Sbjct 779 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 838 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 839 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 898 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 899 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 958 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+VIA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 959 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 1018 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL D Sbjct 1019 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 1078 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D+DRRRAL++E+ RW RVG+ SEL A+ SRYE GT I+ AM TLA S+++F LR Sbjct 1079 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 1138 Query 600 GAPIALYG 607 G + LYG Sbjct 1139 GPIVHLYG 1146 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2510 Score:904 bits(2337), Expect:0.0, Method:Compositional matrix adjust., Identities:438/607(72%), Positives:496/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFS+DTG GHLQ+KSV Q L+E LER LE +AP LD +KEE L+ + Q+ PT+AN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRYQSR+VEN KAITT+R+L GL Y + + ECY+ +P PLYS+SV +S P+ A Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITYPKPLYSSSVPANYSDPQFA 2023 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 V CN L EN+PTVASY I EYDAYLDMVDG CLDTA+FCPAKLRS+PKKH Y P Sbjct 2024 VAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYRAP 2083 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 IRSAVPSA+QNTLQNVL AATKRNCNVTQMRELP LDSA FNVECF+KYACN+EYWE + Sbjct 2084 NIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEEF 2143 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 + PIR+T E V Y+ +LKGPKAAAL+AKT+NL LQ++PMDRF+MD+KRDVKVTPGTK Sbjct 2144 ARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPGTK 2203 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIAEHF Sbjct 2204 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEHF 2263 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 + GD VLETDIASFDKS+DDAMALT LMILEDLGVD LL LIE AFGEISS HLPT T+ Sbjct 2264 KQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGTR 2323 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNTV+N+VIASRVL ERL S CAAFIGDDNI+ GV SDK MA+ Sbjct 2324 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEMAE 2383 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATWLNMEVKIIDAV+GE+ PYFCGGFIL DSVT TACRVADPLKRLFKLGKPL DDE Sbjct 2384 RCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADDE 2443 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 D+DRRRAL +E+ W RVGI L AV +RYE +++A+ T A S +F +RG Sbjct 2444 QDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAIRG 2503 Query 601 APIALYG 607 LYG Sbjct 2504 EIKHLYG 2510 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2511 Score:904 bits(2336), Expect:0.0, Method:Compositional matrix adjust., Identities:434/608(71%), Positives:497/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQT L ++E E Y P+LD KE++L K+LQ + + AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA R+ +G YL SE +V YR +P P+YS S+N ++P+ Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTYPAPIYSPSINIKLTNPET 2023 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN L N+PTVASY + EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 2024 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2083 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFKKYACN EYW Sbjct 2084 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2143 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF MD+KRDVKVTPGT Sbjct 2144 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2203 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2204 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2263 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++A TA+M+LEDLGVD +L LIEAAFGEISS HLPT T Sbjct 2264 FKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2323 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNI+ GV SD LMA Sbjct 2324 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2383 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 RCATW+NMEVKIIDAVV EKAPYFCGGFIL D+VTGT+CRVADPLKRLFKLGKPLA D Sbjct 2384 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2443 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 E D+DRRRAL +E RW R G+ +EL KAV SRYE G +I +M T A+S E+F LR Sbjct 2444 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKKLR 2503 Query 600 GAPIALYG 607 G + LYG Sbjct 2504 GPVVTLYG 2511 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2510 Score:902 bits(2332), Expect:0.0, Method:Compositional matrix adjust., Identities:433/608(71%), Positives:498/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTGQGHLQQKSVRQT L ++E E Y P+LD KE++L K+LQ + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA R+ +G YL S+ +V YR +P P+YS S++ ++P+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSISIKLNNPET 2022 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN L N+PTVASY + EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFKKYACN EYW Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF MD+KRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISTH 2262 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++ALTA+M+LEDLGVD +L LIEAAFGEISS HLPT T Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNI+ GV SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 RCATW+NMEVKIIDAVV EKAPYFCGGFIL D+VTGT+CRVADPLKRLFKLGKPLA D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 E D+DRRRAL +E RW R G+ +EL KAV SRYE G +I +M T ASS E+F LR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 600 GAPIALYG 607 G + LYG Sbjct 2503 GPVVTLYG 2510 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2477 Score:902 bits(2331), Expect:0.0, Method:Compositional matrix adjust., Identities:431/608(71%), Positives:504/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD +E++L+ K+Q+ PT+AN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + SP+V Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K +PIR+T EN+ Y+T+LKGPKAAAL+AKTHNL LQ++PMDRF++D+KRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIE AFGEI+S+HLPT T Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NT++N+VIA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D+VTG+ACRVADPLKRLFKLGKPL D Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D+DRRRAL++E+ RW RVG+ SEL A+ SRYE GT I+ AM TLA S+++F LR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 600 GAPIALYG 607 G + LYG Sbjct 2470 GPIVHLYG 2477 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2426 Score:897 bits(2317), Expect:0.0, Method:Compositional matrix adjust., Identities:428/608(70%), Positives:498/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD +E++L K+Q++P++AN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 119 +SRYQSR+VENMKA R+ G Y ++ G++ Y +P P+YS +V FSSP V Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 1938 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 1939 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 1998 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 1999 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 2058 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 Y K PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2059 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 2118 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2119 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 2178 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2179 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 2238 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NTV+N+ IASRVL +RLT+S CAAFIGDDNIV GV SDKLMA Sbjct 2239 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 2298 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL +D Sbjct 2299 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 2358 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 + D+DRRRAL +E ++W R G+ +EL A+ SRYE G I++AM TLA +++F LR Sbjct 2359 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 2418 Query 600 GAPIALYG 607 G I LYG Sbjct 2419 GPVIHLYG 2426 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2464 Score:895 bits(2314), Expect:0.0, Method:Compositional matrix adjust., Identities:427/608(70%), Positives:502/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQKSVRQ L L E E Y P D KE++L+ K+Q+ PT+AN Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELPCETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEAN 1916 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 119 +SRYQSR+VENMKA+ +R+ +G YL + KV Y + +P P+YS SV+ + S P+V Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPEV 1976 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L+EN+PTVA+Y I EYDAYLD+VDG+ CLD A+FCPAKLR +PK HAY + Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVE FKKYAC EYW+ Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K NPIR+T EN+ Y+ KLKGPKAAAL+AKTHNL LQ++PMDRF+MD+KRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NT++N+VIA RVLR++L++S CAAFIGDDNIV GV+SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCA+W+NMEVKIIDA + EK PYFCGGFIL DSV GTACRVADPLKRLFKLGKPL DD Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D+DRRRAL++E+ +W+R+G+ EL A+ SRY+ G I AM+TL+ S++SF +R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKIR 2456 Query 600 GAPIALYG 607 G I LYG Sbjct 2457 GPIIHLYG 2464 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2408 Score:894 bits(2311), Expect:0.0, Method:Compositional matrix adjust., Identities:419/607(69%), Positives:493/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQ+SV Q +E + E +LE +AP+LD KE+ILR K Q+ P++AN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRYQSR+VENMKA R+L GLG YL +E VECYR +PVP+YS S R SS K A Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTEHPVECYRITYPVPIYSTSDLRGLSSAKTA 1921 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 V ACN L+ NFP+V SY I EYDAYLDMVDG+ CLD +SF P++LRSFPK H+YL+P Sbjct 1922 VRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYLDP 1981 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 I SAVPS QNTLQNVLAAATKRNCNVTQMRELP DSA NVE F+KYAC + W+ Y Sbjct 1982 QINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWDEY 2041 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 + NPI +T ENV Y+ KLKGPKAAAL+AKTHNL L +PMD+F +D+KRDVKVTPGTK Sbjct 2042 RDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPGTK 2101 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLN L PNIHTLFDMSAEDFDAIIAEHF Sbjct 2102 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAEHF 2161 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 + GD VLETDIASFDKS+DD+MALTALMILEDLGVD L+ LIEAAFGEI S HLPT T+ Sbjct 2162 KHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTGTR 2221 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNT++N+VIA RVL ++L SP AFIGDDNI+ G+ SDKLMAD Sbjct 2222 FKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLMAD 2281 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCATW+NMEVKI+D++VG + PYFCGGFI+CD VTGTACRVADPLKRLFKLGKPL +DD Sbjct 2282 RCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLDDG 2341 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 D+DRRRAL +E W+RVG+ +C+A+E RY + ++++A+TTL+ +++SF +RG Sbjct 2342 QDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNIRG 2401 Query 601 APIALYG 607 PI LYG Sbjct 2402 KPIHLYG 2408 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2464 Score:894 bits(2310), Expect:0.0, Method:Compositional matrix adjust., Identities:426/608(70%), Positives:503/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQ+SVRQ L L E E Y P D KE+IL+ K+Q+ PT+AN Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELPCETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEAN 1916 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 119 +SRYQSR+VENMKA+ +R+ +G YL + KV Y + +P P+YS SV+ + S+P+V Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPEV 1976 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV ACN L+EN+PTVA+Y I EYDAYLD+VDG+ CLD A+FCPAKLR +PK HAY + Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVE FKKYAC EYW+ Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 +K NPIR+T EN+ Y+ KLKGPKAAAL+AKTHNL LQ++PMDRF+MD+KRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NT++N+VIA RVLR++L++S CAAFIGDDNIV GV+SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 +RCA+W+NMEVKIIDA + EK PYFCGGFIL DSV GTACRVADPLKRLFKLGKPL DD Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D+DRRRAL++E+ +W+R+G+ EL A+ SRY+ G I AM+TL+ +++SF +R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKIR 2456 Query 600 GAPIALYG 607 G I LYG Sbjct 2457 GPIIHLYG 2464 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 992 Score:887 bits(2292), Expect:0.0, Method:Compositional matrix adjust., Identities:424/607(70%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D KE +L ++Q+ PT+AN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS SV SS K A Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 505 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKH+Y Sbjct 506 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 565 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ + Sbjct 566 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 625 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAAL+AKT++L LQ++PMDRF++D+KRDVKVTPGTK Sbjct 626 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 685 Query 301 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 686 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 745 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 746 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 805 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 480 F+FGAMMKSGMFLTLFVNT++NM IASRVL ERLTNS CAAFIGDDNIV GVKSDKL+A+ Sbjct 806 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 865 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 866 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 925 Query 541 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G +I A+TTL+ + +F LRG Sbjct 926 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 985 Query 601 APIALYG 607 I LYG Sbjct 986 PVIDLYG 992 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2434 Score:876 bits(2264), Expect:0.0, Method:Compositional matrix adjust., Identities:426/608(70%), Positives:490/608(80%), Gaps:1/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSD G GHLQQKSVRQ L +++R E Y P+LD KE+ L KLQ++ T AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 119 RSRYQSR+VENMKA R+ QG +Y+ + K Y + P YS V + SS + Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 120 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 179 AV CN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 180 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 239 P IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA +NVECF+KYACNNEYWE Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 299 + K PIR+T EN+ Y+TKLKG KAAAL+AKTHNL LQ++PMDRFIMD+KRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAII+EH Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 F+PGD VLETDIASFDKS+DD++ALT LMILEDLGVD +LL LIEAAFG+I+S HLPT T Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 420 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 479 +F+FGAMMKSGMFLTLF+NTV+N+ IASRVL RLTNS CAAFIGDDN+V GV SDKLMA Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 DRCATW+NMEVKIIDAV+ K PYFCGGF++ D VT TACR+ADPLKRLFKLGKPL DD Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 599 D+DRRRAL +E +W+R G+ SE+ A+ SRY G+ +++AM+T A S+++FS LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 600 GAPIALYG 607 G I LYG Sbjct 2427 GPVIHLYG 2434 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:672 bits(1735), Expect:0.0, Method:Compositional matrix adjust., Identities:330/608(54%), Positives:434/608(71%), Gaps:2/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSD G HL Q + + +EV++ + L + DL E R Q+ PTQ N Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLLAEMKKRLAYQMRPTQKN 2044 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRY S +V NMK + + +G GHYL+ + + ++ P P YS + F S A Sbjct 2045 KSRYLSAKVHNMKHKIVQCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2104 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 + A N+ + N+PT++S+ + +YDAYLDMVDG +C LDT +F PAK+RS PKK Y +P Sbjct 2105 IVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKKSKYNQP 2164 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYAC-NNEYWET 239 I+S VP + +TLQ++L AATKRNCNVTQMRELP +DSAA NVE FKK+AC + + W Sbjct 2165 LIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKDTDLWTE 2224 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNL-DMLQDIPMDRFIMDLKRDVKVTPG 298 + + P+RL+ + Y+ L+G KA ++++ L ++ MDRF +D+KRDVKVTPG Sbjct 2225 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRDVKVTPG 2284 Query 299 TKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAE 358 TKH EERPKVQVIQAADP+ATAYLC IHRELVRRL AVL P+IH LFDMS+EDFDAI+ Sbjct 2285 TKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2344 Query 359 HFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTK 418 + GD VLETDI+SFDKS+D AMA+TALM+LEDLGV+ +LLTLIEA+FG+I+S+HLPT Sbjct 2345 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITSVHLPTG 2404 Query 419 TKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLM 478 T+F+FG+MMKSG+FLTLFVNT++N+ IA+RVLRE+L ++ CAAFIGDDN++ GV SD +M Sbjct 2405 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2464 Query 479 ADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVD 538 RCA+WLNMEVKI++ +G+++PYFCGGF+L D+VTGT RV+DP+KRL K+GKP D Sbjct 2465 VARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2524 Query 539 DEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCL 598 E D DR RAL+EE W RVGI L A +RY + MAM TLA + S+ Sbjct 2525 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2584 Query 599 RGAPIALY 606 RG ++LY Sbjct 2585 RGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:668 bits(1723), Expect:0.0, Method:Compositional matrix adjust., Identities:329/608(54%), Positives:429/608(70%), Gaps:2/608(0%) Query 1 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 60 YIFSSD G HL Q + + +EV++ + L + DL E R Q+ PTQ N Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRLAYQMRPTQKN 2052 Query 61 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 120 +SRY S +V NMK + + +G GHYL+ + + ++ P P YS + F S A Sbjct 2053 KSRYLSAKVHNMKHKIVRCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2112 Query 121 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 180 + A N+ + N+PT++S+ I +YDAYLDMVDG +C LDT +F PAK+RS PKK Y +P Sbjct 2113 IVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSEYNQP 2172 Query 181 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYAC-NNEYWET 239 I+S VP + +TLQ++L AATKRNCNVTQMRELP +DSAA NVE FK +AC + + W Sbjct 2173 LIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTDLWTE 2232 Query 240 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNL-DMLQDIPMDRFIMDLKRDVKVTPG 298 + + P+RL+ + Y+ L+G KA ++++ + L ++ MDRF +D+KRDVKVTPG Sbjct 2233 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVKVTPG 2292 Query 299 TKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAE 358 TKH EERPKVQ IQAADP+ATAYLC IHRELVRRL AVL P+IH LFDMS+EDFDAI+ Sbjct 2293 TKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2352 Query 359 HFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTK 418 + GD VLETDI+SFDKS+D AMA+TALM+L DLGV+ +LLTLIEA+FG+I+S HLPT Sbjct 2353 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAHLPTG 2412 Query 419 TKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLM 478 T+F+FG+MMKSG+FLTLFVNT++N+ IA+RVLRE+L ++ CAAFIGDDN++ GV SD +M Sbjct 2413 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2472 Query 479 ADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVD 538 RCA+WLNMEVKI+D +G +PYFCGGF+L D+VTGT RV+DP+KRL K+GKP D Sbjct 2473 VARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2532 Query 539 DEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCL 598 E D DR RAL+EE W RVGI L A +RY + MAM TLA + S+ Sbjct 2533 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2592 Query 599 RGAPIALY 606 RG ++LY Sbjct 2593 RGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 1176 to 1594 Score:82.4 bits(202), Expect:6e-15, Method:Compositional matrix adjust., Identities:113/446(25%), Positives:184/446(41%), Gaps:46/446(10%) Query 172 PKKH-AYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMR-ELPVLDSAAFNVECFKK 229 PK+ +++P +R+A L L A KRN N + + + D+A+ VE F Sbjct 1176 PKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWD 1235 Query 230 YACNNEYWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMD 288 E+ T + + +T E+ +++K + L + + + D+P +D + Sbjct 1236 AYVVKEFSGT---DGMAMTRESFSRWLSKQESSTVGQL----ADFNFV-DLPAVDEYKHM 1287 Query 289 LKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTL-FDM 347 +K K +E P +Q I A + EL R +LL I T F Sbjct 1288 IKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTR----MLLETIDTSKFLF 1343 Query 348 SAEDFDAIIAEHFQPGDW-----VLETDIASFDKSEDDAMALTALMILEDLGVDPELLTL 402 I E F D +LE DI+ +DKS+++ I E LG+D L + Sbjct 1344 YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEV 1403 Query 403 IEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI------NMVIASRVLRERLTN 456 + + K KSG T NT+I +M+ +V++ Sbjct 1404 WRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIK----- 1458 Query 457 SPCAAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDS 513 AAF GDD+++ KG+ + A TW N E K+ G YFCG +++ Sbjct 1459 ---AAFCGDDSLIYIPKGLDLPDIQAGANLTW-NFEAKLFRKKYG----YFCGRYVIHHD 1510 Query 514 VTGTACRVADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRY 573 A DPLK + KLG D+ H ++ RR+L + ++ N FS+L +AV + Sbjct 1511 --RGAIVYYDPLKLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVH 1568 Query 574 ET-VGTAVIIMAMTTLASSVESFSCL 598 +T VG A + ++ S F L Sbjct 1569 KTAVGGAFVYCSIIKYLSDKRLFKDL 1594 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1148 to 1574 Score:79.3 bits(194), Expect:4e-14, Method:Compositional matrix adjust., Identities:113/454(25%), Positives:186/454(40%), Gaps:45/454(9%) Query 140 IIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHA-YLEPTIRSAVPSAIQNTLQNVL 198 I+ E+DA + S + +K PK+ +L+P IR+A L L Sbjct 1148 ILNEFDAVTMNLRDISLNVKDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENL 1207 Query 199 AAATKRNCNVTQMR-ELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYIT 257 A KRN N + + + D+A+ VE F + E+ T N + +T E+ +++ Sbjct 1208 VAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDSYVDKEFSGT---NEMTMTRESFSRWLS 1264 Query 258 KLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADP 316 K + L + + + D+P +D + +K K +E P +Q I Sbjct 1265 KQESSTVGQL----ADFNFV-DLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSK 1319 Query 317 LATAYLCGIHRELVRRLNAVLLPNI-HTLFDMSAEDFDAIIAEHFQPGDW-----VLETD 370 A + EL R +LL I + F A I + F D +LE D Sbjct 1320 KINAIFGPMFSELTR----MLLERIDSSKFLFYTRKTPAQIEDFFSDLDSTQAMEILELD 1375 Query 371 IASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSG 430 I+ +DKS+++ I E LG+D L + + + + K KSG Sbjct 1376 ISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTTLKDYTAGVKTCLWYQRKSG 1435 Query 431 MFLTLFVNTVI------NMVIASRVLRERLTNSPCAAFIGDDNIV---KGVKSDKLMADR 481 T NT+I +M+ +V++ AAF GDD+++ KG+ + A Sbjct 1436 DVTTFIGNTIIIAACLSSMIPMDKVIK--------AAFCGDDSLIYIPKGLDLPDIQAGA 1487 Query 482 CATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDEH 541 W N E K+ G YFCG +++ A DPLK + KLG D H Sbjct 1488 NLMW-NFEAKLFRKKYG----YFCGRYVIHHD--RGAIVYYDPLKLISKLGCKHIRDVVH 1540 Query 542 DDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 ++ R +L + ++ N FS+L +AV ++T Sbjct 1541 LEELRESLCDVASNLNNCAYFSQLDEAVAEVHKT 1574 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1177 to 1590 Score:73.2 bits(178), Expect:5e-12, Method:Compositional matrix adjust., Identities:106/438(24%), Positives:179/438(40%), Gaps:42/438(9%) Query 156 CCLDTASFCPAKLRSFPKKHAY--LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRE 213 C LD + P P+ + + P IR+A L L A KRN N ++ Sbjct 1177 CVLDFSKSVP-----LPRDNTKVPMTPVIRTAAERPRSQGLLENLVAMIKRNFNSPELSG 1231 Query 214 LPVLDSAA-------FNVECFKKYACNNEYWETYKKNPIRLTEENVVNYITKLKGPKAAA 266 +++ A F+ K ++ KN I + ++ ++ K + Sbjct 1232 TVDMENTASVVADRFFDSYFLKDKLSGCSLGDSGGKNII--DRQALIRWMEKQEKSTIGQ 1289 Query 267 LYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGI 325 L + D + D+P +D++ +K K E P +Q I A I Sbjct 1290 L----ADYDFV-DLPAIDQYRHIIKSQPKQKLDLSIQSEYPSLQTIVYHSKKINALFGPI 1344 Query 326 HRELVRRLNAVLLPNIHTLFDMSA----EDFDAIIAEHFQPGDWVLETDIASFDKSEDDA 381 EL R++ + + + + F E+F + + H QP + VLE D++ +DKS+++ Sbjct 1345 FSELTRQMLSAIDTSRYLFFTRKTPEQIEEFFSDLDAH-QPME-VLELDVSKYDKSQNEF 1402 Query 382 MALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI 441 I + LG+D L + + + + K KSG T NTVI Sbjct 1403 HCAVEYEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVI 1462 Query 442 -NMVIASRVLRERLTNSPCAAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVV 497 +AS + E++ AAF GDD++V KG + + + W N E K+ Sbjct 1463 IAACMASMLPMEKVIK---AAFCGDDSLVYLPKGCELPNIQSCANLMW-NFEAKLFKKTY 1518 Query 498 GEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWN 557 G YFCG +++ A DPLK + KLG D EH ++ R +L + S N Sbjct 1519 G----YFCGRYVIHHD--RGAIVYVDPLKIISKLGAKHITDKEHLEEFRISLADVSKSLN 1572 Query 558 RVGIFSELCKAVESRYET 575 +++L +AV ++T Sbjct 1573 NCAYYAQLDEAVREVHKT 1590 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 2031 to 2500 Score:72.4 bits(176), Expect:8e-12, Method:Compositional matrix adjust., Identities:110/486(23%), Positives:190/486(39%), Gaps:27/486(5%) Query 130 ENF--PTVASYCIIPEY-DAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAV 186 +NF T + C +P Y DA++ +D K + + + + P + Sbjct 2031 QNFLCTTFPNSCYVPNYMDAWITYNLDLDLAIDDIVINVIKFATIDRTYDCMIPRLSFCS 2090 Query 187 PSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIR 246 P + L L A KRN NV Q+ A + + + Y++ P Sbjct 2091 PVVRKACLVESLIAVQKRNRNVPQLSSEVSPYVMADQLFDSLRSLLDERYYQEVHYGPAE 2150 Query 247 LTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERP 306 L ++ KG + + + ++R+ + K K T + E Sbjct 2151 LAA-----WLNDQKGSVVDEVIGEY----CIYSTAVERYQLITKNSPKPTLSDEAYMEFA 2201 Query 307 KVQVIQAADPLATAYLCGIHRELVRRLNAVLLP--NIHTLFDMSAEDFDAIIAEHF---- 360 QV+ A C I R + + ++L NI DM + F ++ E Sbjct 2202 APQVVLHQTKDINAVFCVIWRGIKTVVQSMLRHHNNIFMFADMDPDSFADLLTEKVSTKV 2261 Query 361 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 420 Q LE DI +DKS+D + L +L GV EL+ + + E + K Sbjct 2262 QETFDSLEIDIKKYDKSQDLKVLLLECKLLRYFGVSEELVIIWFKSHVESIVKDRRSGLK 2321 Query 421 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSD-KLMA 479 F+ +SG T NT+ + + +R L A F GDD+++ G K D + + Sbjct 2322 FKVQVQRRSGDGGTFIGNTLFLIALCARNF--DLRKLKLAVFSGDDSLLVGEKRDLQCDS 2379 Query 480 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 + N++VK K +FC F++ +V + DP+K +L + V+ Sbjct 2380 QNFSDLFNLDVKFFPNF---KYYHFCSKFLI--AVEDRWYFIPDPVKLCIRLARLDLVNW 2434 Query 540 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYET-VGTAVIIMAMTTLASSVESFSCL 598 H ++ R +L++ + + I EL KAV RY V A + + ++ SS + F L Sbjct 2435 GHIEEYRISLKDTTKYYCDDSIVRELSKAVCDRYPVAVDPAEVFRVVCSIVSSKDEFRLL 2494 Query 599 RGAPIA 604 P+A Sbjct 2495 FEEPLA 2500 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 1196 to 1585 Score:70.1 bits(170), Expect:4e-11, Method:Compositional matrix adjust., Identities:103/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LTPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ ++ K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNVSLFSRESLNRWLEK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 T E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE DI+ +DKS+++ I LG + L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E++ AF GDD+++ Sbjct 1427 TLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEFPDVQHSANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D EH ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVREVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 1196 to 1585 Score:69.7 bits(169), Expect:4e-11, Method:Compositional matrix adjust., Identities:104/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ ++ K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNVSLFSRESLNRWLEK----QERVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 T E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE DI+ +DKS+++ I LG + L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVINMVIASRVLR-ERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI + +LR E++ AF GDD+++ Sbjct 1427 TLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLRMEKIIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +I+ C V DPL Sbjct 1484 YFPKGCEFPDIQHSVNLMW-NFEAKLFKKQYG----YFCGRYIIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D EH ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVWEVHKT 1585 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=Gamma-A protein [Barley stripe mosaic virus] Sequence ID: Q80873.1 Length: 771 Range 1: 344 to 748 Score:69.3 bits(168), Expect:5e-11, Method:Compositional matrix adjust., Identities:108/437(25%), Positives:176/437(40%), Gaps:50/437(11%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFN----VECFKKYACN 233 L+P +R+A+P Q +L + A KRN +++ A N +E K A Sbjct 344 LKPVLRTAMPEKRQGSLIESVLAFRKRNLAAPRLQ-------GALNEWHTIENVLKKALK 396 Query 234 NEYWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDV 293 ++E T E+ + + K A L A L D+ + +K DV Sbjct 397 VFFFEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRR---LCDVDFTTYNFMIKNDV 453 Query 294 KVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFD--MSAED 351 K E +Q + D + A+ I +E+ R+ L P H +F+ M+A++ Sbjct 454 KPKLDLTPQVEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRP--HVVFNSRMTADE 511 Query 352 FDAIIAEHFQPGDW-VLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 + +A P + LE D + FDKS+ + + + G+D L L E + Sbjct 512 LNETVA-FLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKS---- 566 Query 411 SSIHLPTKTKFR-FGA------MMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFI 463 T K R FG KSG T NT + L L ++ F Sbjct 567 ---QYQTYVKDRNFGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCL--PLEDAHFCVFG 621 Query 464 GDDNIVKGVKSDKLMADRC----ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTAC 519 GDD+++ +++D C TW N+E K+ D K P FCG F+LC + G Sbjct 622 GDDSLIL-FDQGYIISDPCRQLAGTW-NLECKVFDF----KYPAFCGKFLLC--IDGKYQ 673 Query 520 RVADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTA 579 V D K + KLG+ D E + ++ + + + L KA+ RY + +A Sbjct 674 FVPDAAKFITKLGRTDVRDVEVLSEIYISINDNYKSYKDFKVLDALDKALVDRYRSPYSA 733 Query 580 VIIMAMTTLASSVESFS 596 I A+ +L + F+ Sbjct 734 --ISALVSLCYHIFDFN 748 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 1234 to 1675 Score:69.7 bits(169), Expect:6e-11, Method:Compositional matrix adjust., Identities:111/466(24%), Positives:190/466(40%), Gaps:36/466(7%) Query 145 DAYLDMVDGASCCLDTASFCPAKLRS-FPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATK 203 D YL + LD + + F +K +L+P IR+A+P + T L A K Sbjct 1234 DGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQLESLLALQK 1293 Query 204 RNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVN--YITKLKG 261 RN ++E + + E KK Y IR + +VN + + Sbjct 1294 RNQAAPDLQE--NVHATVLIEETMKKLKS-----VVYDVGKIR--ADPIVNRAQMERWWR 1344 Query 262 PKAAALYAK-THNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATA 320 ++ A+ AK ++ L +I ++ +K DVK E +Q + + L + Sbjct 1345 NQSTAVQAKVVADVRELHEIDYSSYMFMIKSDVKPKTDLTPQFEYSALQTVVYHEKLINS 1404 Query 321 YLCGIHRELVRRLNAVLLPNIHTLFD--MSAEDF-DAIIAEHFQPGDWVLETDIASFDKS 377 I +E+ R + P H +F+ M++ D D + + + +E D++ FDKS Sbjct 1405 LFGPIFKEINERKLDAMQP--HFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDKS 1462 Query 378 EDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFV 437 + L I G+D L E + + + + KSG T Sbjct 1463 ANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTYNA 1522 Query 438 NTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRC---ATWLNMEVKIID 494 N+ + + + + L + + GDD+++ + + + D C AT N E KI Sbjct 1523 NS--DRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFV-DPCPKLATKWNFECKIFK 1579 Query 495 AVVGEKAPYFCGGFILCDSVTGTACR--VADPLKRLFKLGKPLAVDDEHDDDRRRALQEE 552 V P FCG F+L S +C V DP+K L KLGK D +H + +L + Sbjct 1580 YDV----PMFCGKFLLKTS----SCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDS 1631 Query 553 SARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCL 598 + + S+L ++V RY G +V A+ L ++SF+ L Sbjct 1632 NRALGNYMVVSKLSESVSDRYLYKGDSV--HALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 1158 to 1579 Score:69.3 bits(168), Expect:7e-11, Method:Compositional matrix adjust., Identities:117/452(26%), Positives:179/452(39%), Gaps:52/452(11%) Query 140 IIPEYDAYL-----DMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTL 194 I+ EYDA + ++ C LD + P S L+P IR+A + L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRES----ETTLKPVIRTAAEKPRKPGL 1213 Query 195 QNVLAAATKRNCNVTQMREL-PVLDSAAFNVECFKKYACNNEYWETYKKNPIR---LTEE 250 L A KRN N ++ + + D+A+ V+ F + Y KK P L+ Sbjct 1214 LENLVAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYLIKEKKKPKNIPLLSRA 1268 Query 251 NVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQ 309 ++ +I K + L + D + D+P +D++ +K+ K E P +Q Sbjct 1269 SLERWIEKQEKSTIGQL----ADFDFI-DLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQ 1323 Query 310 VIQAADPLATAYLCGIHRELVRRLNAVLLPNI-HTLFDMSAEDFDAIIAEHFQ------P 362 I A + EL R+L L I + F I E F P Sbjct 1324 TIVYHSKKINALFGPVFSELTRQL----LETIDSSRFMFYTRKTPTQIEEFFSDLDSNVP 1379 Query 363 GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFR 422 D +LE DI+ +DKS+++ I + LG+D L + + + + K Sbjct 1380 MD-ILELDISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTC 1438 Query 423 FGAMMKSGMFLTLFVNTVINMVIASRVL-RERLTNSPCAAFIGDDNIV---KGVKSDKLM 478 KSG T NT+I S +L ERL AF GDD+I+ KG + Sbjct 1439 LWYQRKSGDVTTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQ 1495 Query 479 ADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPLKRLFKLGKPLAV 537 W N E K+ G YFCG +I+ C V DPLK + KLG Sbjct 1496 QGANLLW-NFEAKLFRKRYG----YFCGRYIIHHD---RGCIVYYDPLKLISKLGAKHIK 1547 Query 538 DDEHDDDRRRALQEESARWNRVGIFSELCKAV 569 + EH ++ R +L + + N ++ L AV Sbjct 1548 NREHLEEFRTSLCDVAGSLNNCAYYTHLNDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 1158 to 1579 Score:68.9 bits(167), Expect:8e-11, Method:Compositional matrix adjust., Identities:117/452(26%), Positives:179/452(39%), Gaps:52/452(11%) Query 140 IIPEYDAYL-----DMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTL 194 I+ EYDA + ++ C LD + P S L+P IR+A + L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRES----ETTLKPVIRTAAEKPRKPGL 1213 Query 195 QNVLAAATKRNCNVTQMREL-PVLDSAAFNVECFKKYACNNEYWETYKKNPIR---LTEE 250 L A KRN N ++ + + D+A+ V+ F + Y KK P L+ Sbjct 1214 LENLVAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYLIKEKKKPKNIPLLSRA 1268 Query 251 NVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQ 309 ++ +I K + L + D + D+P +D++ +K+ K E P +Q Sbjct 1269 SLERWIEKQEKSTIGQL----ADFDFI-DLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQ 1323 Query 310 VIQAADPLATAYLCGIHRELVRRLNAVLLPNI-HTLFDMSAEDFDAIIAEHFQ------P 362 I A + EL R+L L I + F I E F P Sbjct 1324 TIVYHSKKINALFGPVFSELTRQL----LETIDSSRFMFYTRKTPTQIEEFFSDLDSNVP 1379 Query 363 GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFR 422 D +LE DI+ +DKS+++ I + LG+D L + + + + K Sbjct 1380 MD-ILELDISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTC 1438 Query 423 FGAMMKSGMFLTLFVNTVINMVIASRVL-RERLTNSPCAAFIGDDNIV---KGVKSDKLM 478 KSG T NT+I S +L ERL AF GDD+I+ KG + Sbjct 1439 LWYQRKSGDVTTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQ 1495 Query 479 ADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPLKRLFKLGKPLAV 537 W N E K+ G YFCG +I+ C V DPLK + KLG Sbjct 1496 QGANLLW-NFEAKLFRKRYG----YFCGRYIIHHD---RGCIVYYDPLKLISKLGAKHIK 1547 Query 538 DDEHDDDRRRALQEESARWNRVGIFSELCKAV 569 + EH ++ R +L + + N ++ L AV Sbjct 1548 NREHLEEFRTSLCDVAGSLNNCAYYTHLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 1196 to 1585 Score:68.9 bits(167), Expect:8e-11, Method:Compositional matrix adjust., Identities:103/410(25%), Positives:168/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ ++ K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNVSLFSRESLNRWLEK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 T E P +Q I +A + EL R+L + + F E Sbjct 1309 QKLDTSIQTEYPALQTIVYHSKKISAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE DI+ +DKS+++ I LG + L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E++ AF GDD+++ Sbjct 1427 TLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEFPDVQHSANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D EH ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVWEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 1234 to 1675 Score:68.9 bits(167), Expect:8e-11, Method:Compositional matrix adjust., Identities:111/466(24%), Positives:190/466(40%), Gaps:36/466(7%) Query 145 DAYLDMVDGASCCLDTASFCPAKLRS-FPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATK 203 D YL + LD + + F +K +L+P IR+A+P + T L A K Sbjct 1234 DGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQLESLLALQK 1293 Query 204 RNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVN--YITKLKG 261 RN ++E + + E KK Y IR + +VN + + Sbjct 1294 RNQAAPDLQE--NVHATVLIEETMKKLKS-----VVYDVGKIR--ADPIVNRAQMERWWR 1344 Query 262 PKAAALYAK-THNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATA 320 ++ A+ AK ++ L +I ++ +K DVK E +Q + + L + Sbjct 1345 NQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLINS 1404 Query 321 YLCGIHRELVRRLNAVLLPNIHTLFD--MSAEDF-DAIIAEHFQPGDWVLETDIASFDKS 377 I +E+ R + P H +F+ M++ D D + + + +E D++ FDKS Sbjct 1405 LFGPIFKEINERKLDAMQP--HFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDKS 1462 Query 378 EDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFV 437 + L I G+D L E + + + + KSG T Sbjct 1463 ANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTYNA 1522 Query 438 NTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRC---ATWLNMEVKIID 494 N+ + + + + L + + GDD+++ + + + D C AT N E KI Sbjct 1523 NS--DRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFV-DPCPKLATKWNFECKIFK 1579 Query 495 AVVGEKAPYFCGGFILCDSVTGTACR--VADPLKRLFKLGKPLAVDDEHDDDRRRALQEE 552 V P FCG F+L S +C V DP+K L KLGK D +H + +L + Sbjct 1580 YDV----PMFCGKFLLKTS----SCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDS 1631 Query 553 SARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCL 598 + + S+L ++V RY G +V A+ L ++SF+ L Sbjct 1632 NRALGNYMVVSKLSESVSDRYLYKGDSV--HALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 1196 to 1585 Score:68.6 bits(166), Expect:1e-10, Method:Compositional matrix adjust., Identities:103/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ ++ K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNVSLFSRESLNRWLEK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 T E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE DI+ +DKS+++ I LG + L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E++ AF GDD+++ Sbjct 1427 TLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEFPDVQHSANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D EH ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVWEVHKT 1585 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Tomato aspermy virus] Sequence ID: P29035.1 Length: 828 Range 1: 242 to 686 Score:67.4 bits(163), Expect:2e-10, Method:Compositional matrix adjust., Identities:113/489(23%), Positives:190/489(38%), Gaps:68/489(13%) Query 75 ITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPT 134 I +L+ LG +L ++C T P P + +V V+ + PT Sbjct 242 IDDATLLKNLGSFLL---PIQCEYTKLPEPTLITPPELTRPTDRVTVDLLQAICDSTLPT 298 Query 135 VASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTL 194 Y + +++ D S +D + L + +L+P + + T Sbjct 299 HVCYDDT-YHQTFIENAD-YSVDIDRVRLKQSDLLAKVIDEGHLKPVLNTGSGQKRIGTT 356 Query 195 QNVLAAATKRNCNVTQMRELPVLDSAAFNV-ECFKKYACNNEYWETYKKNPIRLTEENVV 253 + VL A KRN +V ++ L + +V ECF N + +L N + Sbjct 357 REVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLSFMNGD----------KLCSSNFI 406 Query 254 NYITKLKGPKAAALYAKTHNLDMLQDIP------MDRFIMDLKRDVKVTPGTKHTEERP- 306 N ++ A +K ++ D+P + + +K DVK + +RP Sbjct 407 NIVSDFH-----AYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTDTLNIDRPL 461 Query 307 -------KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 + Q+ PL TA R L +R V+LP + + + +DF + Sbjct 462 PATITFHRKQLTSQFSPLFTALFQRFQRCLTKR---VILP-VGKISSLEIKDFSVL---- 513 Query 360 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 + LE D++ FDKS+ + + IL LG P ++ F +S I K Sbjct 514 ---NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGC-PVHISKWWCDFHRMSYI----KD 565 Query 420 KFRFGAMM------KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVK 473 K R G M ++G T F NT++ M + + + F GDD++ +K Sbjct 566 K-RAGVSMPISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDK--LIFSGDDSLGFSIK 622 Query 474 SDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGK 533 + + NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 623 APVGDPSLFTSLFNMEAKVMEPSV----PYICSKFLLTDDF-GNTFSVPDPLREIQRLGS 677 Query 534 ---PLAVDD 539 PL DD Sbjct 678 KKIPLDEDD 686 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 1196 to 1585 Score:67.4 bits(163), Expect:2e-10, Method:Compositional matrix adjust., Identities:103/410(25%), Positives:166/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ ++ K + + + D + D+P +D++ K K Sbjct 1256 --RKPNKNVSLFSRESLNRWLEK----QEQVTIGQLADFDFV-DLPAVDQYRHMYKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 T E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE DI+ +DKS+++ I LG + L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E++ AF GDD+++ Sbjct 1427 TLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEFPDVQHSANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D EH ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVWEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 1196 to 1585 Score:67.0 bits(162), Expect:3e-10, Method:Compositional matrix adjust., Identities:102/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNSPELSGVVDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ +I K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNFSLFSRESLNRWIAK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE D++ +DKS+++ I LG++ L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E+L AF GDD+++ Sbjct 1427 TLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEYPDIQQAANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D +H ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 1196 to 1585 Score:67.0 bits(162), Expect:3e-10, Method:Compositional matrix adjust., Identities:102/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNSPELSGVVDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ +I K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNFSLFSRESLNRWIAK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE D++ +DKS+++ I LG++ L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E+L AF GDD+++ Sbjct 1427 TLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEYPDIQQAANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D +H ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 1196 to 1585 Score:67.0 bits(162), Expect:4e-10, Method:Compositional matrix adjust., Identities:102/410(25%), Positives:167/410(40%), Gaps:32/410(7%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNE 235 L P +R+A Q L L A KRN N ++ + +++ A V + F Y + Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNSPELSGVVDIENTASLVVDKFFDSYLLKEK 1255 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVK 294 KN + E++ +I K + + + D + D+P +D++ +K K Sbjct 1256 --RKPNKNFSLFSRESLNRWIAK----QEQVTIGQLADFDFV-DLPAVDQYRHMIKAQPK 1308 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----E 350 E P +Q I A + EL R+L + + F E Sbjct 1309 QKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIE 1368 Query 351 DFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEI 410 DF + H P D VLE D++ +DKS+++ I LG++ L + + + Sbjct 1369 DFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKT 1426 Query 411 SSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDNIV 469 + K KSG T NTVI +AS + E+L AF GDD+++ Sbjct 1427 TLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLL 1483 Query 470 ---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPL 525 KG + + W N E K+ G YFCG +++ C V DPL Sbjct 1484 YFPKGCEYPDIQQAANLMW-NFEAKLFKKQYG----YFCGRYVIHHD---RGCIVYYDPL 1535 Query 526 KRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 K + KLG D +H ++ RR+L + + N +++L AV ++T Sbjct 1536 KLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 1178 to 1585 Score:66.6 bits(161), Expect:4e-10, Method:Compositional matrix adjust., Identities:107/432(25%), Positives:173/432(40%), Gaps:36/432(8%) Query 156 CCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELP 215 C LD + A + P L P +R+A Q L L A KRN N ++ + Sbjct 1178 CILDMSKSVAAPKDAKPT----LIPMVRTAAEMPRQTGLLENLVAMIKRNFNSPELSGVV 1233 Query 216 VLDSAAFNV--ECFKKYACNNEYWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHN 273 +++ A V + F Y + KN + E++ +I K + + + Sbjct 1234 DIENTASLVVDKFFDSYLLKEK--RKPNKNFSLFSRESLNRWIAK----QEQVTIGQLAD 1287 Query 274 LDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRR 332 D + D+P +D++ +K K E P +Q I A + EL R+ Sbjct 1288 FDFV-DLPAVDQYRHMIKAQPKQKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQ 1346 Query 333 LNAVLLPNIHTLFDMSA----EDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALM 388 L + + F EDF + H P D VLE D++ +DKS+++ Sbjct 1347 LLDSIDSSRFLFFTRKTPAQIEDFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYE 1404 Query 389 ILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIAS 447 I LG++ L + + + + K KSG T NTVI +AS Sbjct 1405 IWRRLGLEDFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLAS 1464 Query 448 RVLRERLTNSPCAAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYF 504 + E+L AF GDD+++ KG + + W N E K+ G YF Sbjct 1465 MLPMEKLIK---GAFCGDDSLLYFPKGCEYPDIQQAANLMW-NFEAKLFKKQYG----YF 1516 Query 505 CGGFILCDSVTGTACRVA-DPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFS 563 CG +++ C V DPLK + KLG D +H ++ RR+L + N ++ Sbjct 1517 CGRYVIHHD---RGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCNVAESLNNCAYYT 1573 Query 564 ELCKAVESRYET 575 +L AV ++T Sbjct 1574 QLDDAVGEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 1216 to 1613 Score:66.2 bits(160), Expect:6e-10, Method:Compositional matrix adjust., Identities:91/426(21%), Positives:183/426(42%), Gaps:36/426(8%) Query 168 LRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECF 227 +R F +K + P +R+A+P Q + + A KRN +++E V + Sbjct 1216 IRGFQEKICF-SPKLRTAMPEKRQGSFAESILALRKRNMACPRLQE-SVNEHQIIEDTIA 1273 Query 228 KKYACNNEYWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIM 287 K ++C + +++ +T+E+ + + K + A LD + D+ F++ Sbjct 1274 KAFSCY--FTDSFVDQSPLITDESALRWWEKQSTTAKNQMLADWRTLDQI-DVCTYNFMI 1330 Query 288 --DLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLF 345 D+K + +TP +++ +Q + + + + +E+ R+ + L PN+ Sbjct 1331 KNDVKPKLDLTPQSEYA----ALQTVVYPEKIVNGLFGPVIKEINERVLSALKPNVFVNT 1386 Query 346 DMSAEDFDAIIAEHFQPGD--WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLI 403 M++E+ + AE+ PGD V+E D + +DKS+ + + E G++ + L Sbjct 1387 RMTSEEL-SRTAEYLYPGDEFEVVEIDFSKYDKSKTSLHIRMVIKLYEQFGLNGYMKYLW 1445 Query 404 EAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFI 463 E + + + KSG T NT +M L + + + F Sbjct 1446 EKSQTQTVVKDRNYGVEAYILYQQKSGNCDTYGSNTYSSMFALLDCL--PMEKAVYSIFG 1503 Query 464 GDDNIVKGVKSDKLMADRC---ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACR 520 GDD+++ K ++ D C A+ N + K + + P FCG F++ V G Sbjct 1504 GDDSLILFPKG-TIINDPCGRLASLWNFDCKSMKF----RVPAFCGKFLI--PVGGRYRF 1556 Query 521 VADPLKRLFKLG-KPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTA 579 DP+K + KLG K +A++ + + R+ N + SE+ ++ Y+ A Sbjct 1557 EPDPMKLITKLGNKTIAIEGKTKAEVRK---------NGSKLLSEIYVSICDNYKNYDDA 1607 Query 580 VIIMAM 585 ++ A+ Sbjct 1608 RVLDAL 1613 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 1196 to 1585 Score:66.2 bits(160), Expect:6e-10, Method:Compositional matrix adjust., Identities:98/412(24%), Positives:169/412(41%), Gaps:36/412(8%) Query 178 LEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYW 237 L P +R+A Q L L A KRN N ++ + +++ A V ++++ Sbjct 1196 LIPMVRTAAEMPRQTGLLENLVAMIKRNFNSPELSGIIDIENTASLVV--------DKFF 1247 Query 238 ETYKKNPIRLTEENVVNY----ITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRD 292 ++Y R +NV + + + + + + D + D+P +D++ +K Sbjct 1248 DSYLLKEKRKPNKNVSLFCRESLNRWLEKQEQVTIGQLADFDFV-DLPAVDQYRHMIKAQ 1306 Query 293 VKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA--- 349 K T E P +Q I A + EL R++ + + F Sbjct 1307 PKQKLDTSIQSEYPALQTIVYHSKKINAIFGPLFSELTRQMLESIDSSKFLFFTRKTPAQ 1366 Query 350 -EDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFG 408 EDF + H P D +LE DI+ +DKS+++ I LG++ L + + Sbjct 1367 IEDFFGDLDSHV-PMD-ILELDISKYDKSQNEFHCAVEYEIWRRLGLEDFLGEVWKQGHR 1424 Query 409 EISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVI-NMVIASRVLRERLTNSPCAAFIGDDN 467 + + K KSG T NTVI +AS + E++ AF GDD+ Sbjct 1425 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDS 1481 Query 468 IV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-D 523 ++ KG + + W N E K+ G YFCG +++ C V D Sbjct 1482 LLYFPKGCEFPDIQHTANLMW-NFEAKLFRKQYG----YFCGRYVIHHD---RGCIVYYD 1533 Query 524 PLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 PLK + KLG D +H ++ RR+L + + N +++L AV ++T Sbjct 1534 PLKLISKLGAKHIKDWDHLEEFRRSLCDVANSLNNCAYYTQLDDAVSEVHKT 1585 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 1153 to 1579 Score:65.9 bits(159), Expect:8e-10, Method:Compositional matrix adjust., Identities:111/462(24%), Positives:184/462(39%), Gaps:61/462(13%) Query 140 IIPEYDAYL-----DMVDGASCCLDTASFCPAKLRSFPKKHA-YLEPTIRSAVPSAIQNT 193 I+ EYDA + ++ C +D + K S P++ + P R+A Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFS-----KSVSVPRQQQEFFTPAHRTAAERPRSAG 1207 Query 194 LQNVLAAATKRNCNVTQMRE-LPVLDSAAFNVECFKKYACNNEYWETY------KKNPIR 246 L L A KRN N + L + D+A V N++W+ Y N Sbjct 1208 LLENLVAMIKRNFNSPDLTGILDIEDTAELVV---------NKFWDAYIIDELSGGNVTP 1258 Query 247 LTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEER 305 +T + ++ K + + + + D + D+P +D++ +K K G +E Sbjct 1259 MTSDAFHRWMAK----QEKSTIGQLADFDFV-DLPAIDQYKHMIKAQPKQKLGLSPQDEY 1313 Query 306 PKVQVIQAADPLATAYLCGIHRELVRRL------NAVLLPNIHTLFDMSA--EDFDAIIA 357 +Q I A + EL R+L + L T + A D D+ + Sbjct 1314 AALQTIVYHSKQINAIFGPLFSELTRQLLERIDSSKFLFYTRKTPEQIEAFFSDLDSTVP 1373 Query 358 EHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPT 417 VLE DI+ +DKS+++ +I E LG++ L + + + S Sbjct 1374 ME------VLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTA 1427 Query 418 KTKFRFGAMMKSGMFLTLFVNTV-INMVIASRVLRERLTNSPCAAFIGDDNIV---KGVK 473 K KSG T NTV I +AS + +++ AAF GDD+I+ KG+ Sbjct 1428 GIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVIK---AAFCGDDSILYIPKGLD 1484 Query 474 SDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGK 533 + + W N E K+ G YFCG +I+ A DPLK + KLG Sbjct 1485 LPDIQSGANLMW-NFEAKLYRKRYG----YFCGRYIIHHD--RGAIVYYDPLKLISKLGC 1537 Query 534 PLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 +H ++ R +L + S+ N F +L A+ ++T Sbjct 1538 KHIKSLDHLEEFRISLCDVSSSLNNCAYFGQLNDAIAEVHKT 1579 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71189.3 Length: 2772 Range 1: 2318 to 2707 Score:65.9 bits(159), Expect:8e-10, Method:Compositional matrix adjust., Identities:101/408(25%), Positives:165/408(40%), Gaps:30/408(7%) Query 182 IRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV-ECFKKYACNNEYWETY 240 IRS+V +NTL+ L RN N + + DS A + E F + N Sbjct 2318 IRSSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEV 2377 Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKV----T 296 ++ + + +++ K + P A + + + + + +K DVK T Sbjct 2378 TESHLSSNTMLLSDWLDK-RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNT 2436 Query 297 PGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAII 356 P +K+ Q I D TA I V RL V+ M + A + Sbjct 2437 PLSKYVTG----QNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAAL 2492 Query 357 AEHFQPGD----WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISS 412 + GD + E DI+ +DKS+ M +IL LGVD E+L+ GE S Sbjct 2493 RNNL--GDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFC--GEYDS 2548 Query 413 IHLPTKTK---FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIV 469 + + T TK G+ +SG T N+++ + S VLR + GDD+++ Sbjct 2549 V-VRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRG--LDYSYIVVSGDDSLI 2605 Query 470 KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLF 529 + + + +VKI + + APYFC F++ V + V DPLK Sbjct 2606 FSRQPLDIDTSVLSDNFGFDVKIFN----QAAPYFCSKFLV--QVEDSLFFVPDPLKLFV 2659 Query 530 KLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVG 577 K G D + + ++ + S +NR + EL K V +Y+ G Sbjct 2660 KFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKYKHSG 2707 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 460 to 629 Score:65.1 bits(157), Expect:1e-09, Method:Compositional matrix adjust., Identities:53/178(30%), Positives:81/178(45%), Gaps:9/178(5%) Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLP-TKTKFRF 423 + LE D++ FDKS+ + IL LG P LT + F S + P K Sbjct 460 YFLEADLSKFDKSQGELHLEFQREILLALGF-PAPLTNWWSDFHRDSYLSDPHAKVGMSV 518 Query 424 GAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRCA 483 ++G T F NT++ M + + L++ CA F GDD+++ L D Sbjct 519 SFQRRTGDAFTYFGNTLVTMAMIAYA--SDLSDCDCAIFSGDDSLIISKVKPVLDTDMFT 576 Query 484 TWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDEH 541 + NME+K++D V PY C F L ++ G V DPL+ + +L K + DE Sbjct 577 SLFNMEIKVMDPSV----PYVCSKF-LVETEMGNLVSVPDPLREIQRLAKRKILRDEQ 629 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 1153 to 1579 Score:63.2 bits(152), Expect:5e-09, Method:Compositional matrix adjust., Identities:111/460(24%), Positives:183/460(39%), Gaps:57/460(12%) Query 140 IIPEYDAYL-----DMVDGASCCLDTASFCPAKLRSFPKKHA-YLEPTIRSAVPSAIQNT 193 I+ EYDA + ++ C +D + K S P++ + P IR+A Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFS-----KSVSVPRQQQEFFTPVIRTAAERPRSRG 1207 Query 194 LQNVLAAATKRNCNVTQMRE-LPVLDSAAFNVECFKKYACNNEYWETY------KKNPIR 246 L L A KRN N + L + D+A V N++W+ Y N Sbjct 1208 LLENLVAMIKRNFNSPDLTGILDIEDTAELVV---------NKFWDAYIIDELSGGNVTP 1258 Query 247 LTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEER 305 +T + ++ K + + + + D + D+P +D++ +K K +E Sbjct 1259 MTSDAFHRWMAK----QEKSTIGQLADFDFV-DLPAIDQYKHMIKAQPKQKLDLSPQDEY 1313 Query 306 PKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNI-HTLFDMSAEDFDAIIAEHFQPGD 364 +Q I A + EL R+L L I + F I E F D Sbjct 1314 AALQTIVYHSKQINAIFGPLFSELTRQL----LERIDSSKFLFYTRKTPEQIEEFFSDLD 1369 Query 365 W-----VLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 419 VLE DI+ +DKS+++ +I E LG++ L + + + S Sbjct 1370 STVPMEVLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGI 1429 Query 420 KFRFGAMMKSGMFLTLFVNTV-INMVIASRVLRERLTNSPCAAFIGDDNIV---KGVKSD 475 K KSG T NTV I +AS + +++ AAF GDD+++ KG+ Sbjct 1430 KTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVIK---AAFCGDDSMLYIPKGLDLP 1486 Query 476 KLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPL 535 + + W N E K+ G YFCG +I+ A DP+K + KLG Sbjct 1487 DIQSGANLMW-NFEAKLYRKRYG----YFCGRYIIHHD--RGAIVYYDPVKLISKLGCKH 1539 Query 536 AVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYET 575 +H ++ R +L + SA N + +L A+ ++T Sbjct 1540 IKSLDHLEEFRISLCDVSASLNNCAYYGQLNDAIAEVHKT 1579 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 1325 to 1626 Score:63.2 bits(152), Expect:6e-09, Method:Compositional matrix adjust., Identities:75/313(24%), Positives:127/313(40%), Gaps:19/313(6%) Query 279 DIP-MDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVL 337 D+P D ++ +KR K T E P +Q I + A + + L + +++ Sbjct 1325 DLPAFDTYMHMIKRQPKSRLDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMV 1384 Query 338 LPNIHTLFDMSA-EDFDAIIAEHFQPGDW-VLETDIASFDKSEDDAMALTALMILEDLGV 395 + + ED ++ D+ +LE D++ +DKS+ D + I E LG+ Sbjct 1385 DSSKFFFYTRKKPEDLQEFFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGL 1444 Query 396 DPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNT-VINMVIASRVLRERL 454 D L + K KSG T NT +I +AS + ++ Sbjct 1445 DDILAWMWSMGHKRTILQDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMLPLDKC 1504 Query 455 TNSPCAAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILC 511 A+F GDD+++ KG++ + A W N E K+ +K YFCG +I+ Sbjct 1505 FK---ASFCGDDSLIYLPKGLEYPDIQATANLVW-NFEAKLFR----KKYGYFCGKYIIH 1556 Query 512 DSVTGTACRV-ADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVE 570 + C V DPLK + KLG V EH ++ R +L + + F L A+ Sbjct 1557 HA---NGCIVYPDPLKLISKLGNKSLVGYEHVEEFRISLLDVAHSLFNGAYFHLLDDAIH 1613 Query 571 SRYETVGTAVIIM 583 + G ++ Sbjct 1614 ELFPNAGGCSFVI 1626 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Peanut stunt virus (strain J)] Sequence ID: P28727.1 Length: 834 Range 1: 229 to 659 Score:62.8 bits(151), Expect:6e-09, Method:Compositional matrix adjust., Identities:113/470(24%), Positives:185/470(39%), Gaps:56/470(11%) Query 80 ILQGLGHYLKSEGKVEC-YRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPTVASY 138 +L LG +L + C Y + P L S + + + +V+VE+ V + PT Y Sbjct 229 LLANLGSFLL---PIHCEYSRVDPS-LSSFHLTQPHPTDRVSVESLQAVCDTSLPTHVCY 284 Query 139 CIIPEYDAYLDM-VDGASCCLDTASFCPAKLRSFPKKHA--YLEPTIRSAVPSAIQNTLQ 195 D Y + V+ + D + PK YL+P + + S T + Sbjct 285 D-----DTYHQVFVENSDFTTDIDHLTLKQSDLIPKADGGNYLKPVLTTGSGSKRLGTTK 339 Query 196 NVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNY 255 VL A KRN +V ++ S + ++ K A + E+Y N L + N +N Sbjct 340 EVLTAIKKRNADVPEL-------SGSVDLTRISK-AVARRFKESY-FNTNALAQSNFLNV 390 Query 256 ITKLKG--PKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQA 313 + K AA +L L + + +K DVK +RP I Sbjct 391 VGNFHAYMQKWAASGLTYDDLPDLHAENLQLYEHMVKSDVKPVVADTLNVDRPVPATITF 450 Query 314 ADPLATAYLCGIHRELVRRL-----NAVLLPNIHTLFDMSAEDFDAIIAEHFQPGDWVLE 368 T+ + L R V++P + + + ++F +++ +H LE Sbjct 451 HAKGITSQFSPLFISLFERFQRCLRGRVVVP-VGKISSLEMDNF-SVLNKH------CLE 502 Query 369 TDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMM- 427 D++ FDKS+ + + IL LG P ++ F S I K K R G M Sbjct 503 IDLSKFDKSQGELHLMIQEEILNLLGC-PVDISKWWCDFHRYSYI----KDK-RAGVSMP 556 Query 428 -----KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRC 482 ++G T F NT++ M + S + F GDD++ + + +D Sbjct 557 ISFQRRTGDAFTYFGNTLVTMALFSWCYDTDQFDR--MLFSGDDSLAFSLNPIEGKSDWF 614 Query 483 ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLG 532 + NME K +D PY C F+L D + G V DPL+ L +LG Sbjct 615 TSLFNMEAKNMDP----PTPYICSKFLLTDEL-GNTFSVPDPLRELQRLG 659 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2693 to 2986 Score:61.6 bits(148), Expect:1e-08, Method:Compositional matrix adjust., Identities:81/309(26%), Positives:124/309(40%), Gaps:20/309(6%) Query 241 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHN-LDMLQDIPMDRFIMDLKRDVKVTPGT 299 + + I +TE+ V +++K + + AL + L++ ++I F + +KRD KV + Sbjct 2693 RSDVIAITEKGVRTWMSKREPSQLRALSSDLQKPLNLEEEITT--FKLMVKRDAKVKLDS 2750 Query 300 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 359 + P Q I A E R+ NI +M+ +I E Sbjct 2751 SCLVKHPPAQNIMFHRKAVNAIFSPCFDEFKNRVITCTNSNIVFFTEMTNSTLASIAKEM 2810 Query 360 FQPGDW--VLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPT 417 V E D + FDKS+D + + G D +LL + ++ L Sbjct 2811 LGSEHVYNVGEIDFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQGEYTSNATTLDG 2870 Query 418 KTKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFI-GDDNIVKGVKSDK 476 + F KSG T N++ + I S TN A F+ GDD+++ + Sbjct 2871 QLSFSVDNQRKSGASNTWIGNSIETLGILSMFY---YTNRFKALFVSGDDSLIFSESPIR 2927 Query 477 LMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTG-TACRVADPLKRLFKLGKPL 535 AD T L E K + V PYFC F + +TG V DP K L KLG Sbjct 2928 NSADAMCTELGFETKFLTPSV----PYFCSKFFV---MTGHDVFFVPDPYKLLVKLG--- 2977 Query 536 AVDDEHDDD 544 A DE DD+ Sbjct 2978 ASKDEVDDE 2986 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66117.1 Length: 858 Range 1: 242 to 683 Score:61.2 bits(147), Expect:2e-08, Method:Compositional matrix adjust., Identities:119/491(24%), Positives:187/491(38%), Gaps:79/491(16%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYS--ASVNRAFSSPKVAVEACNVVLKENFPTVAS 137 +L LG +L V+C +P P + S+NRA + +V + + PT ++ Sbjct 242 LLSNLGPFLVP---VKCQYKQYPTPTVAIPPSLNRA--TDRVDINLVQSICDSTLPTHSN 296 Query 138 YCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNV 197 Y + +++ D S LD + L + ++ P + + T + V Sbjct 297 Y-DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLNTGSGHKRVGTTKEV 354 Query 198 LAAATKRNCNVTQMRE---LPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVN 254 L A KRN +V ++ + LP L S A F Y N L N VN Sbjct 355 LTAIKKRNADVPELGDSVNLPRL-SKAVAERFFIAYINGNS-----------LATSNFVN 402 Query 255 YITK----LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERP---- 306 ++ ++ K++ L +L L + + +K DVK +RP Sbjct 403 VVSNFHDYMEKWKSSGL--SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVPAT 460 Query 307 ----KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQP 362 K + PL TA R L R V+LP + + + FD Sbjct 461 ITYHKKGITSQFSPLFTALFERFQRCLRER---VILP-VGKISSLEMSGFDV-------K 509 Query 363 GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFR 422 + LE D++ FDKS+ + + IL LG P +T F S I R Sbjct 510 NKYCLEIDLSKFDKSQGEFHLMIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRR 563 Query 423 FGAMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGV 472 G M ++G T F NT++ M + E+L F GDD++ V Sbjct 564 AGVGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FPGDDSLGFSV 617 Query 473 KSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLG 532 + T NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 618 LPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLG 672 Query 533 K---PLAVDDE 540 P + +DE Sbjct 673 TKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 293 to 632 Score:59.7 bits(143), Expect:5e-08, Method:Compositional matrix adjust., Identities:81/363(22%), Positives:142/363(39%), Gaps:29/363(7%) Query 177 YLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV-ECFKKYACNNE 235 Y EP + T + VL A KRN +V ++ + + A V E FK+ N+ Sbjct 293 YYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEVAEKFKRAYLNH- 351 Query 236 YWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVK- 294 + I L +++ L+ K + + +L +I + R+ +K D+K Sbjct 352 -------SGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIKSDIKP 404 Query 295 VTPGTKHTEERPKVQVI---QAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAED 351 V T H E + + + Y + + L + + I + + ++ Sbjct 405 VVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKISSLELKN 464 Query 352 FDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEIS 411 W LE D++ FDKS+ + IL LG P LT F S Sbjct 465 VPL-------SNKWFLEADLSKFDKSQGELHLEFQREILLSLGF-PAPLTNWWCDFHRES 516 Query 412 SIHLP-TKTKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVK 470 + P ++G T F NT++ M + + + CA F GDD+++ Sbjct 517 MLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCD--MNTVDCAIFSGDDSLLI 574 Query 471 GVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFK 530 L A+ + NME+K++D + PY C F+L ++ V DP++ + + Sbjct 575 CKSKPHLDANVFQSLFNMEIKVMDPSL----PYVCSKFLL-ETEMNNLVSVPDPMREIQR 629 Query 531 LGK 533 L K Sbjct 630 LAK 632 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT2.1 Length: 687 Range 1: 258 to 598 Score:57.8 bits(138), Expect:2e-07, Method:Compositional matrix adjust., Identities:91/380(24%), Positives:139/380(36%), Gaps:53/380(13%) Query 177 YLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNN 234 Y +P + + S T + L A KRN +V ++ + ++ + +V + Y C+ Sbjct 258 YYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVERLSESVAKKFLSSYVCD- 316 Query 235 EYWETYKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVK 294 P+ E + Y K K HNL R+ +K DVK Sbjct 317 -------LKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQ--------RYEHMIKTDVK 361 Query 295 VTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDA 354 P H+ ++ A P AT G + + A P+ LFD + D Sbjct 362 --PTVAHSMH------VERAIP-ATITFHG------KSICAGFSPSFTALFDEFQKSLDE 406 Query 355 IIAEHFQP-----------GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLI 403 + P + LE D++ FDKS+ IL +G+ P L Sbjct 407 RVVIPSGPISTIEMDFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGL-PAHLANW 465 Query 404 EAAFGEISSIHLP-TKTKFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAF 462 F S I P K F ++G T F NT++ M + S R F Sbjct 466 WCDFHYKSFISDPRAKVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEK--MLF 523 Query 463 IGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA 522 GDD++ +D + NME KI+D V PY C F++ D + G Sbjct 524 AGDDSLAISSSPIVGCSDYFVSLFNMEAKIMDPGV----PYICSKFLVSDEL-GRCFSAP 578 Query 523 DPLKRLFKLGKPLAVDDEHD 542 DP++ +LGK D D Sbjct 579 DPIREFQRLGKKKISADNDD 598 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1199 to 1625 Score:57.4 bits(137), Expect:3e-07, Method:Compositional matrix adjust., Identities:105/450(23%), Positives:174/450(38%), Gaps:43/450(9%) Query 169 RSFPK-KHAYLEPTIRSAV-PSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVEC 226 R P+ K +L P + +AV P I L+N+LA KRN N + + + + Sbjct 1199 RHIPRTKGEFLRPLLNTAVEPPRIPGLLENLLAL-IKRNFNAPDL-------AGQLDYDF 1250 Query 227 FKKYACNNEYWETYKKNP-----IRL------TEENVVNYITKLKGPKAAALYAKTHNLD 275 + C+ + + + +RL + +N +++ K + + + N D Sbjct 1251 LSRKVCDGFFGKLLPPDVEASELLRLPVDHMYSVQNFDDWLNK----QEPGVVGQLANWD 1306 Query 276 MLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNA 335 + D++ +KR K E P +Q I A I L RL + Sbjct 1307 HIGMPAADQYRHMIKRTPKAKLDLSIQSEYPALQTIVYHSKHVNAVFGPIFSCLTERLLS 1366 Query 336 VLLPNIHTLFDMSAEDFDAIIAEHFQPGDW-VLETDIASFDKSEDDAMALTALMILEDLG 394 V+ P F + GD +LE DI+ +DKS++ + I E LG Sbjct 1367 VVDPLRFKFFTRTTPADLEFFFRDMVVGDMEILELDISKYDKSQNKFHFEVEMRIWEMLG 1426 Query 395 VDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVINMVIASRVL-RER 453 +D + + E + K KSG T NT+I +L E+ Sbjct 1427 IDKYIEKVWENGHRKTHLRDYTAGIKTVIEYQRKSGDVTTFIGNTIIIAACLCSILPMEK 1486 Query 454 LTNSPCAAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFIL 510 + A F GDD+I+ + + + + W N E K+ + G YFCG + L Sbjct 1487 VFK---AGFCGDDSIIYLPRNLLYPDIQSVSNNMW-NFEAKLFKKLHG----YFCGRYXL 1538 Query 511 CDSVTGTACR-VADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAV 569 + G R + DPLK + KLG D +H ++ R ++ + + + F L AV Sbjct 1539 RN---GRYLRLLPDPLKIITKLGCKAIKDWDHLEEFRISMFDMACEYKNCFGFDVLESAV 1595 Query 570 -ESRYETVGTAVIIMAMTTLASSVESFSCL 598 ES + G V A+ S+ F L Sbjct 1596 KESFPKAEGCNVAFCAIYKFLSNKYLFRTL 1625 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83262.1 Length: 857 Range 1: 242 to 683 Score:57.0 bits(136), Expect:4e-07, Method:Compositional matrix adjust., Identities:112/486(23%), Positives:185/486(38%), Gaps:69/486(14%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPTVASYC 139 +L LG +L V+C P P + N ++ +V + + PT ++Y Sbjct 242 LLSNLGPFLV---PVKCQYEKCPTPTIAIPPNLNRATDRVDINLVQSICDSTLPTHSNY- 297 Query 140 IIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLA 199 + +++ D S LD + L + ++ P + + T + VL Sbjct 298 DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLNTGSGHKRVGTTKEVLT 356 Query 200 AATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYITK- 258 A KRN +V ++ + + N+ K A ++ +Y N L N VN ++ Sbjct 357 AIKKRNADVPELGD-------SVNLSRLSK-AVAERFFISYI-NGNSLASSNFVNVVSNF 407 Query 259 ---LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERP--------K 307 ++ K++ L +L L + + +K DVK +RP K Sbjct 408 HDYMEKWKSSGL--SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVPATITYHK 465 Query 308 VQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGDWVL 367 + PL TA R L R ++LP + + + FD + L Sbjct 466 KSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFDV-------KSKYCL 514 Query 368 ETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMM 427 E D++ FDKS+ + L IL LG P +T F S I R G M Sbjct 515 EIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRRAGVGM 568 Query 428 ------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGVKSDKL 477 ++G T F NT++ M + E+L F GDD++ + Sbjct 569 PISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLLPPVG 622 Query 478 MADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGK---P 534 + T NME K+++ V PY C F+L D G V DPL+ + +LG P Sbjct 623 DPSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGTKKIP 677 Query 535 LAVDDE 540 + +DE Sbjct 678 YSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain NT9)] Sequence ID: O40977.1 Length: 857 Range 1: 242 to 683 Score:56.6 bits(135), Expect:4e-07, Method:Compositional matrix adjust., Identities:117/491(24%), Positives:192/491(39%), Gaps:79/491(16%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYS--ASVNRAFSSPKVAVEACNVVLKENFPTVAS 137 +L LG +L V+C P P + S+NRA + +V + + PT ++ Sbjct 242 LLSNLGPFLV---PVKCQYEKCPTPTVAIPPSLNRA--TDRVDINLVQSICDSTLPTHSN 296 Query 138 YCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNV 197 Y + +++ D S LD + L + ++ P + + T + V Sbjct 297 Y-DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLSTGSGHKRVGTTKEV 354 Query 198 LAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYIT 257 L A KRN +V ++ + + N+ K A ++ +Y N L N VN ++ Sbjct 355 LTAIKKRNADVPELGD-------SVNLSRLSK-AVAERFFISYI-NGNSLASSNFVNVVS 405 Query 258 K----LKGPKAAALYAKTHNLDMLQDIPMDR---FIMDLKRDVKVTPGTKHTEERP---- 306 ++ K++ L + D L D+ + + +K DVK +RP Sbjct 406 NFHDYMEKWKSSGL-----SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVPAT 460 Query 307 ----KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQP 362 K + PL TA R L R ++LP + + + FD + +H Sbjct 461 ITYHKKGITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH--- 512 Query 363 GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFR 422 LE D++ FDKS+ + + IL LG P +T F S I R Sbjct 513 ---CLEIDLSKFDKSQGEFHLMIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRR 563 Query 423 FGAMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGV 472 G M ++G T F NT++ M + E+L F GDD++ V Sbjct 564 AGVGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSV 617 Query 473 KSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLG 532 + T NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 618 LPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLG 672 Query 533 K---PLAVDDE 540 P + +DE Sbjct 673 TKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain K)] Sequence ID: Q86783.1 Length: 858 Range 1: 242 to 683 Score:56.6 bits(135), Expect:4e-07, Method:Compositional matrix adjust., Identities:117/491(24%), Positives:192/491(39%), Gaps:79/491(16%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYS--ASVNRAFSSPKVAVEACNVVLKENFPTVAS 137 +L LG +L V+C P P + S+NRA + +V + + PT ++ Sbjct 242 LLSNLGPFLV---PVKCQYEKCPTPTVANPPSLNRA--TDRVDINLVQSICDSTLPTHSN 296 Query 138 YCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNV 197 Y + +++ D S LD + L + ++ P + + T + V Sbjct 297 Y-DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLNTGSGHKRVGTTKEV 354 Query 198 LAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYIT 257 L A KRN +V ++ + + N+ K A ++ +Y N L N VN ++ Sbjct 355 LTAIKKRNADVPELGD-------SVNLSRLSK-AVAERFFISYI-NGNSLASSNFVNVVS 405 Query 258 K----LKGPKAAALYAKTHNLDMLQDIPMDR---FIMDLKRDVKVTPGTKHTEERP---- 306 ++ K++ L + D L D+ + + +K DVK +RP Sbjct 406 NFHDYMEKWKSSGL-----SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVPAT 460 Query 307 ----KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQP 362 K + PL TA R L R ++LP + + + FD + +H Sbjct 461 ITYHKKGITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH--- 512 Query 363 GDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFR 422 LE D++ FDKS+ + + IL LG P +T F S I R Sbjct 513 ---CLEIDLSKFDKSQGEFHLMIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRR 563 Query 423 FGAMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGV 472 G M ++G T F NT++ M + E+L F GDD++ V Sbjct 564 AGVGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSV 617 Query 473 KSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLG 532 + T NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 618 LPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLG 672 Query 533 K---PLAVDDE 540 P + +DE Sbjct 673 TKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain MB-8)] Sequence ID: Q66145.1 Length: 857 Range 1: 242 to 683 Score:56.6 bits(135), Expect:5e-07, Method:Compositional matrix adjust., Identities:113/489(23%), Positives:188/489(38%), Gaps:75/489(15%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPTVASYC 139 +L LG +L V+C P P + N ++ +V + + PT ++Y Sbjct 242 LLSNLGPFLV---PVKCQYEKCPTPPIAIPPNLNRATDRVDINLVQSICDSTLPTHSNY- 297 Query 140 IIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLA 199 + +++ D S LD + L + ++ P + + T + VL Sbjct 298 DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLNTGSGHKRVGTTKEVLT 356 Query 200 AATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYITK- 258 A KRN +V ++ + + N+ K A ++ +Y N L N VN ++ Sbjct 357 AIKKRNADVPELGD-------SVNLSRLSK-AVAERFFISYI-NGNSLASSNFVNVVSNF 407 Query 259 ---LKGPKAAALYAKTHNLDMLQDIPMDR---FIMDLKRDVKVTPGTKHTEERP------ 306 ++ K++ L + D L D+ + + +K DVK +RP Sbjct 408 HDYMEKWKSSGL-----SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPIPATIT 462 Query 307 --KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGD 364 K + PL TA R L R ++LP + + + FD Sbjct 463 YHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFDV-------KNK 511 Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFG 424 + LE D++ FDKS+ + L IL LG P +T F S I R G Sbjct 512 YCLEIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRRAG 565 Query 425 AMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGVKS 474 M ++G T F NT++ M + E+L F GDD++ + Sbjct 566 VGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLLP 619 Query 475 DKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGK- 533 + + T NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 620 PVGDSSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGTK 674 Query 534 --PLAVDDE 540 P + +DE Sbjct 675 KIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain FNY)] Sequence ID: P16490.1 Length: 857 Range 1: 333 to 683 Score:56.2 bits(134), Expect:6e-07, Method:Compositional matrix adjust., Identities:96/390(25%), Positives:153/390(39%), Gaps:64/390(16%) Query 176 AYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNE 235 ++ P + + T + VL A KRN +V ++ + + N+ K A Sbjct 333 GHMIPVLNTGSGHKRVGTTKEVLTAIKKRNADVPELGD-------SVNLSRLSK-AVAER 384 Query 236 YWETYKKNPIRLTEENVVNYITK----LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKR 291 ++ +Y N L N VN ++ ++ K++ L +L L + + +K Sbjct 385 FFISYI-NGNSLASSNFVNVVSNFHDYMEKWKSSGL--SYDDLPDLHAENLQFYDHMIKS 441 Query 292 DVKVTPGTKHTEERP--------KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHT 343 DVK +RP K + PL TA R L R ++LP + Sbjct 442 DVKPVVSDTLNIDRPVPATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGK 497 Query 344 LFDMSAEDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLI 403 + + FD + +H LE D++ FDKS+ + L IL LG P +T Sbjct 498 ISSLEMAGFD-VKNKH------CLEIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKW 549 Query 404 EAAFGEISSIHLPTKTKFRFGAMM------KSGMFLTLFVNTVINMVIASRVLR----ER 453 F S I R G M ++G LT F NT++ M + E+ Sbjct 550 WCDFHRFSYIR-----DRRAGVGMPISFQRRTGDALTYFGNTIVTMAEFAWCYDTDQFEK 604 Query 454 LTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDS 513 L F GDD++ + + T NME K+++ V PY C F+L D Sbjct 605 LL------FSGDDSLGFSLLPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDE 654 Query 514 VTGTACRVADPLKRLFKLGK---PLAVDDE 540 G V DPL+ + +LG P + +DE Sbjct 655 F-GNTFSVPDPLREVQRLGTKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain B)] Sequence ID: Q66136.1 Length: 857 Range 1: 242 to 683 Score:56.2 bits(134), Expect:6e-07, Method:Compositional matrix adjust., Identities:115/491(23%), Positives:189/491(38%), Gaps:79/491(16%) Query 80 ILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPTVASYC 139 +L LG +L V+C P P + N ++ +V + + PT ++Y Sbjct 242 LLSNLGPFLV---PVKCQYEKCPTPTIAIPPNLNRATDRVDINLVQSICDSTLPTHSNY- 297 Query 140 IIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLA 199 + +++ D S LD + L + ++ P + + T + VL Sbjct 298 DDSFHQVFVESAD-YSIDLDHVRLRQSDLIAKIPDSGHMIPVLNTGSGHKRVGTTKEVLT 356 Query 200 AATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYITK- 258 A KRN +V ++ + + N+ K A ++ +Y N L N VN ++ Sbjct 357 AIKKRNADVPELGD-------SVNLSRLSK-AVAERFFISYI-NGNSLASSNFVNVVSNF 407 Query 259 ---LKGPKAAALYAKTHNLDMLQDIPMDR---FIMDLKRDVKVTPGTKHTEERP------ 306 ++ K++ L + D L D+ + + +K DVK +RP Sbjct 408 HDYMEKWKSSGL-----SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVPATIT 462 Query 307 --KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGD 364 K + PL TA R L R ++LP + + + FD Sbjct 463 YHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFDV-------KNK 511 Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFG 424 + LE D++ FDKS+ + L IL LG P +T F S I R G Sbjct 512 YCLEIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKWWCDFHRFSYIR-----DRRAG 565 Query 425 AMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGVKS 474 M ++G T F NT++ M + E+L F GDD++ G Sbjct 566 VGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSL--GFSQ 617 Query 475 DKLMAD--RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLG 532 + D + T NME K+++ V PY C F+L D G V DPL+ + +LG Sbjct 618 LPPVGDSSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLG 672 Query 533 K---PLAVDDE 540 P + +DE Sbjct 673 TKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Alfalfa mosaic virus (strain 425 / isolate Leiden)] Sequence ID: P03593.2 Length: 790 Range 1: 479 to 691 Score:55.5 bits(132), Expect:9e-07, Method:Compositional matrix adjust., Identities:57/231(25%), Positives:97/231(41%), Gaps:26/231(11%) Query 310 VIQAADPLATAYLCGIHRELVRRLNAVLLPN--IHTLFDMSAEDFDAIIAEHFQPGDWVL 367 ++ ++ P+ +L R ++ + + +P+ H LF + AE FDA + HF+ Sbjct 479 IVMSSSPI---FLAAAARLMLILRDKITIPSGKFHQLFSIDAEAFDA--SFHFK------ 527 Query 368 ETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMM 427 E D + FDKS+++ L L+ LG+ E LTL A + F Sbjct 528 EIDFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNAHRKSRISDSKNGVFFNVDFQR 587 Query 428 KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADR---CAT 484 ++G LT NT++ + V N GDD+++ V ++L D+ T Sbjct 588 RTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLIGTV--EELPRDQEFLFTT 645 Query 485 WLNMEVKIIDAVVGEKAPYFCGGFILCDSVTG---TACRVADPLKRLFKLG 532 N+E K P+ C F++ T + +PLK L +LG Sbjct 646 LFNLEAKF-----PHNQPFICSKFLITMPTTSGGKVVLPIPNPLKLLIRLG 691 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 1152 to 1553 Score:55.5 bits(132), Expect:1e-06, Method:Compositional matrix adjust., Identities:109/429(25%), Positives:172/429(40%), Gaps:46/429(10%) Query 140 IIPEYDAYL-----DMVDGASCCLDTASFCPAKLRSFPKK-HAYLEPTIRSAV-PSAIQN 192 I+ +YDA + ++ C LD + P PK+ LEP +R+A P Sbjct 1152 ILNKYDAVTMRLRDNSLNVKDCVLDFSKSIP-----MPKEVKPCLEPVLRTAAEPPRAAG 1206 Query 193 TLQNVLAAATKRNCNVTQMRELPVLDSAAFNV--ECFKKYACNNEYWETYKKNPIR-LTE 249 L+N L A KRN N + ++S A V + F Y E Y KN +T+ Sbjct 1207 LLEN-LVAMIKRNFNAPDLTGTIDIESTASVVVDKFFDSYFIKKE---KYTKNIAGVMTK 1262 Query 250 ENVVNYITKLKGPKAAALYAKTHNLDMLQDIP-MDRFIMDLKRDVKVTPGTKHTEERPKV 308 ++++ ++ K L N + D+P +D++ +K K E P + Sbjct 1263 DSMMRWLENRK----EVLLDDLANYN-FTDLPAIDQYKHMIKAQPKQKLDLSIQNEYPAL 1317 Query 309 QVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSA----EDFDAIIAEHFQPGD 364 Q I L G EL R L F ++F + + H P D Sbjct 1318 QTIVYHSKQINGILAGF-SELTRLLLEAFDSKKFLFFTRKTPEQIQEFFSDLDSHV-PMD 1375 Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFG 424 VLE DI+ +DKS+++ I + LG++ L + + + + K Sbjct 1376 -VLELDISKYDKSQNEFHCAVEYEIWKRLGLNEFLAEVWKQGHRKTTLKDYIAGIKTCLW 1434 Query 425 AMMKSGMFLTLFVNTV-INMVIASRVLRERLTNSPCAAFIGDDNIV---KGVKSDKLMAD 480 KSG T NTV I + S + E++ AF GDD+++ KG+ + + Sbjct 1435 YQRKSGDVTTFIGNTVIIAACLGSMLPMEKVIK---GAFCGDDSVLYFPKGLDFPDIQSC 1491 Query 481 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 540 W N E K+ G YFCG +I+ A DPLK + KLG D + Sbjct 1492 ANLMW-NFEAKLYRKRYG----YFCGRYIIHHD--KGAIVYYDPLKLISKLGAKHIKDYD 1544 Query 541 HDDDRRRAL 549 H ++ R +L Sbjct 1545 HLEELRVSL 1553 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Kor)] Sequence ID: Q96711.1 Length: 857 Range 1: 333 to 683 Score:55.1 bits(131), Expect:1e-06, Method:Compositional matrix adjust., Identities:95/390(24%), Positives:152/390(38%), Gaps:64/390(16%) Query 176 AYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNE 235 ++ P + + T + VL A KRN +V ++ + + N+ K A Sbjct 333 GHMIPVLNTGSGHKRVGTTKEVLTAIKKRNADVPELGD-------SVNLSRLSK-AVAER 384 Query 236 YWETYKKNPIRLTEENVVNYITK----LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKR 291 ++ +Y N L N VN ++ ++ K++ L +L L + + +K Sbjct 385 FFISYI-NGNSLASSNFVNVVSNFHDYMEKWKSSGL--SYDDLPDLHAENLQFYDHMIKS 441 Query 292 DVKVTPGTKHTEERP--------KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHT 343 DVK +RP K + PL TA R L R ++LP + Sbjct 442 DVKPVVSDTLNIDRPVPATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGK 497 Query 344 LFDMSAEDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLI 403 + + FD + +H LE D++ FDKS+ + L IL LG P +T Sbjct 498 ISSLEMAGFD-VKNKH------CLEIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKW 549 Query 404 EAAFGEISSIHLPTKTKFRFGAMM------KSGMFLTLFVNTVINMVIASRVLR----ER 453 F S I R G M ++G T F NT++ M + E+ Sbjct 550 WCDFHRFSYIR-----DRRAGVGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEK 604 Query 454 LTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDS 513 L F GDD++ + + T NME K+++ V PY C F+L D Sbjct 605 LL------FSGDDSLGFSLLPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDE 654 Query 514 VTGTACRVADPLKRLFKLGK---PLAVDDE 540 G V DPL+ + +LG P + +DE Sbjct 655 F-GNTFSVPDPLREVQRLGTKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Y)] Sequence ID: Q83265.1 Length: 857 Range 1: 333 to 683 Score:55.1 bits(131), Expect:1e-06, Method:Compositional matrix adjust., Identities:95/390(24%), Positives:152/390(38%), Gaps:64/390(16%) Query 176 AYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNE 235 ++ P + + T + VL A KRN +V ++ + + N+ K A Sbjct 333 GHMIPVLNTGSGHKRVGTTKEVLTAIKKRNADVPELGD-------SVNLSRLSK-AVAER 384 Query 236 YWETYKKNPIRLTEENVVNYITK----LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKR 291 ++ +Y N L N VN ++ ++ K++ L +L L + + +K Sbjct 385 FFISYI-NGNSLASSNFVNVVSNFHDYMEKWKSSGL--SYDDLPDLHAENLQFYDHMIKS 441 Query 292 DVKVTPGTKHTEERP--------KVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHT 343 DVK +RP K + PL TA R L R ++LP + Sbjct 442 DVKPVVSDTLNIDRPVPATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGK 497 Query 344 LFDMSAEDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLI 403 + + FD + +H LE D++ FDKS+ + L IL LG P +T Sbjct 498 ISSLEMAGFD-VKNKH------CLEIDLSKFDKSQGEFHLLIQEHILNGLGC-PAPITKW 549 Query 404 EAAFGEISSIHLPTKTKFRFGAMM------KSGMFLTLFVNTVINMVIASRVLR----ER 453 F S I R G M ++G T F NT++ M + E+ Sbjct 550 WCDFHRFSYIR-----DRRAGVGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEK 604 Query 454 LTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDS 513 L F GDD++ + + T NME K+++ V PY C F+L D Sbjct 605 LL------FSGDDSLGFSLLPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDE 654 Query 514 VTGTACRVADPLKRLFKLGK---PLAVDDE 540 G V DPL+ + +LG P + +DE Sbjct 655 F-GNTFSVPDPLREVQRLGTKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Olive latent virus 2 isolate Italy] Sequence ID: Q83944.1 Length: 787 Range 1: 331 to 676 Score:53.5 bits(127), Expect:4e-06, Method:Compositional matrix adjust., Identities:97/391(25%), Positives:155/391(39%), Gaps:62/391(15%) Query 171 FPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELP----VLDSAAFNVEC 226 F +K + +IR+ + T + +L A +KRN QM E+P V A Sbjct 331 FRRKPDFAVSSIRTGLEMPRIATKKEMLMAFSKRNVGAPQMVEVPQEIHVKRLADRFFRT 390 Query 227 FKKYAC----NNEYWETY--KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDI 280 F K + YW+ + +K + EN + P ++ L ML+ Sbjct 391 FLKEGGWDKGDGHYWDDFFHRKGRKVFSLENCYD------DPLSSYLV-------MLKS- 436 Query 281 PMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPN 340 +F +DL V+ P T E+ +V + +L + R R + V++P Sbjct 437 -AGKFSLDLNFPVRSVPQTITYHEKWVTEV------FSPMFLQVMARFFSRLQDWVVVPA 489 Query 341 IHTLFDMSAEDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELL 400 DF + G + E D++ FDKS+ + I LG P Sbjct 490 ------GPMADFSRVWPSF--EGKCLTEIDLSKFDKSQGKLLHDVQREIFLRLGFPP--- 538 Query 401 TLIEAAFGEISSIHLPTKT---KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNS 457 + F S +L K F ++G T F NT++ M++ + V L + Sbjct 539 IWCDWWFKFHESSYLNDKNLGIAFSVDYQRRTGNTATYFGNTLVTMIMMAEVY--ELDSL 596 Query 458 P-CAAFIGDDNIVKGVKSDKLMADRCATW---LNMEVKIIDAVVGEKAPYFCGGFILCDS 513 P C F GDDN+ + +D+ + R + + NME K++ G+ Y C + LC + Sbjct 597 PFCGLFSGDDNL---IVTDRPLEGRVSLFPNMFNMEAKVMRP--GQN--YMCSKY-LC-T 647 Query 514 VTGTACRVADPLKRLFKLGKPLAVDDEHDDD 544 V G V DP K L K G + EH DD Sbjct 648 VDGRVTPVPDPFKLLKKAGASCPL--EHLDD 676 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 1279 to 1647 Score:52.0 bits(123), Expect:2e-05, Method:Compositional matrix adjust., Identities:89/401(22%), Positives:145/401(36%), Gaps:54/401(13%) Query 195 QNVLAAATKRNCNVTQMRELPVLDSAAFN-VECFKKYACNNEYWETYKKNPIRLTEENVV 253 + V A KRN NV ++ L++ A VE F + + E + + + E + Sbjct 1279 RQVGLAIEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSAEQIQ 1338 Query 254 NYITK----LKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQ 309 Y K + P AL P+ ++ +KRDVK E K Sbjct 1339 TYQNKTGNKVTDPVCVALS------------PIQKYKHMIKRDVKFNLTDGAQSEYTKAA 1386 Query 310 VIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF-QPGDWVLE 368 I P T I + RL A ++ + + + H + E Sbjct 1387 TITYHQPEITQVATAIFGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSENNTFTE 1446 Query 369 TDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMK 428 D + FDKS+ + L +IL G DPE + L A S F+ + Sbjct 1447 IDFSKFDKSQGEIHQLIQDLILIKFGCDPEFVALWSTAHRSSSIFDQNVGIGFKTDFQRR 1506 Query 429 SGMFLTLFVNTVINMVIASRVL----RERLTNSPCAAFIGDDNIVKGVKSDKLMADRCAT 484 +G T N+++ + + V+ RE++ GDD+++ ++ + Sbjct 1507 TGDAFTFLGNSLVTAAMLAFVISDPDREKIRYMLVG---GDDSLICSYGPIQVPLEPLGD 1563 Query 485 WLNMEVKIIDAVVGEKAPYFC-------GGFILCDSVTGTACRVADPLKRLFKLGKPLAV 537 NM K++ PYF G ILC V DP K L KLG+ Sbjct 1564 IFNMSCKLVQPA----CPYFASRYLIRRGDEILC---------VPDPYKLLVKLGRKDVP 1610 Query 538 DDEHDDDRRRALQEESARWNRVGIFSELCKA-----VESRY 573 D++ R +SA++ IF ++ K V+ RY Sbjct 1611 DNQASLCEIRTGLADSAKY----IFDDIVKQKLAILVQVRY 1647 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate PLUM P863)] Sequence ID: P27738.1 Length: 1884 Range 1: 1537 to 1798 Score:51.2 bits(121), Expect:2e-05, Method:Compositional matrix adjust., Identities:72/298(24%), Positives:116/298(38%), Gaps:56/298(18%) Query 264 AAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLC 323 AA + A + D D P+D+ + +K + + TE + A LA C Sbjct 1537 AATIGAHSQRSD--SDWPLDKIFLFMKSQLCTKFEKRFTEAK-------AGQTLA----C 1583 Query 324 GIHRELV------RRLNAVLLPN------IHTLFDMSA-EDFDAIIAEHFQPGDWVLETD 370 H+ LV R VL N IH + S EDF A F G +E+D Sbjct 1584 FPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDF----ARRFSNGSICVESD 1639 Query 371 IASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGA---MM 427 +FD S+D + + +L G D +L S I + R G M Sbjct 1640 YTAFDVSQDHTILAFEVELLRHFGWDDRVLQ---------SYIKMKCTLGCRLGGFAIMR 1690 Query 428 KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDD----NIVKGVKSDKLMADRCA 483 +G F T NT+ NMV R + + F GDD ++ + + + + + Sbjct 1691 FTGEFSTFLFNTLANMVFT--FCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILSK-- 1746 Query 484 TWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDEH 541 L+++ K+ K P FCG + CD + C + + L+ + G+ + V D + Sbjct 1747 --LSLKAKVNRT----KVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSY 1798 >RecName: Full=Replicase large subunit [Tobacco rattle virus-PSG] Sequence ID: P05079.1 Length: 179 Range 1: 40 to 170 Score:47.0 bits(110), Expect:9e-05, Method:Compositional matrix adjust., Identities:43/142(30%), Positives:68/142(47%), Gaps:16/142(11%) Query 462 FIGDDNIVKGVKSDKLMADRC---ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTA 518 + GDD+++ + + + D C AT N E KI V P FCG F+L ++ Sbjct 40 YGGDDSLIAFPRGTQFV-DPCPKLATKWNFECKIFKYDV----PMFCGKFLL----KTSS 90 Query 519 CR--VADPLKRLFKLGKPLAVDDEHDDDRRRALQEESARWNRVGIFSELCKAVESRYETV 576 C V DP+K L KLGK D +H + +L + + + S+L ++V RY Sbjct 91 CYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYK 150 Query 577 GTAVIIMAMTTLASSVESFSCL 598 G +V A+ L ++SF+ L Sbjct 151 GDSV--HALCALWKHIKSFTAL 170 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 1538 to 1799 Score:47.8 bits(112), Expect:3e-04, Method:Compositional matrix adjust., Identities:71/298(24%), Positives:118/298(39%), Gaps:56/298(18%) Query 264 AAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLC 323 AA + A + D D P+D+ + +K + + TE + A LA C Sbjct 1538 AATIGAHSQRSD--SDWPLDKIFLFMKSQLCTKFEKRFTEAK-------AGQTLA----C 1584 Query 324 GIHRELV------RRLNAVLLPN------IHTLFDMSA-EDFDAIIAEHFQPGDWVLETD 370 H+ LV R VL N IH + S EDF A+ F G +E+D Sbjct 1585 FPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDF----AKRFSNGSMCVESD 1640 Query 371 IASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGA---MM 427 +FD S+D + + +L+ G D ++L S I + R G M Sbjct 1641 YTAFDVSQDHTILAFEVELLKHFGWDDKVLQ---------SYIKMKCTLGCRLGGFAIMR 1691 Query 428 KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDD----NIVKGVKSDKLMADRCA 483 +G F T NT+ NMV R + + F GDD ++ + + + + + Sbjct 1692 FTGEFSTFLFNTLANMVFT--FCRYEVPDGTPICFAGDDMCALRNLREIDTHECILSK-- 1747 Query 484 TWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDEH 541 L+++ K+ K P FCG + D + C + + L+ + G+ + V D + Sbjct 1748 --LSLKAKVNRT----KVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSY 1799 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1346 to 1728 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:93/413(23%), Positives:163/413(39%), Gaps:54/413(13%) Query 145 DAYLDMVDGASCCLD-----TASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLA 199 D Y D + A+ L + ++ P + K+ + P +R+A+P Q+ L L Sbjct 1346 DTYFDGYEVATGGLQIDMNASLTYYPNRQMKMWKECRGMYPMLRTAMPEKRQSGLAEGLL 1405 Query 200 AATKRNCNVTQMR----ELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNY 255 A KRN +++ E V++S +E KK + E+ N T E + Sbjct 1406 ALNKRNMAAPKLQESVNEFEVIEST---IEKAKKVFFD----ESRIDNSKLETFEGAARW 1458 Query 256 ITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAAD 315 K + A ++ L +I + + +K DVK E +Q + D Sbjct 1459 WVKQSCTAQKQMLA---DVRTLSEIDVTSYNFMIKGDVKPKLDLSPQSEYSALQTVVYPD 1515 Query 316 PLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFD-AIIAEHFQPGDWVLETDIASF 374 + A I +E+ R+ L P++ M++++ D A+ + +E D + F Sbjct 1516 KIVNALFGPIMKEINERIRVALKPHVIYNTRMTSDELDPAVEFLDVREDHESVEIDFSKF 1575 Query 375 DKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMM------- 427 DKS+ + + + G+D + L E + T K R ++ Sbjct 1576 DKSKTSLHIRVVIELYKLFGLDEMIAYLWEKS-------QCQTTIKDRVNGIIAQILYQQ 1628 Query 428 KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIV---KGVKSDKLMADRC-- 482 +SG T NT S + L + F GDD+++ KG+ ++ D C Sbjct 1629 ESGNCDTYGSNTW--SAALSLLESLPLEKATFMIFGGDDSLIFFPKGM----VIEDPCRR 1682 Query 483 -ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVA-DPLKRLFKLGK 533 A+ N + K+ + K FCG F++ G + A DP K L KLG+ Sbjct 1683 LASMWNFDCKLFNF----KNNSFCGKFLI---KVGEKYKFAPDPYKLLTKLGR 1728 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Broad bean mottle virus] Sequence ID: P27462.1 Length: 810 Range 1: 471 to 632 Score:45.4 bits(106), Expect:0.001, Method:Compositional matrix adjust., Identities:46/171(27%), Positives:75/171(43%), Gaps:11/171(6%) Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGE--ISSIHLPTKTKFR 422 + LE D++ FDKS+ + +IL +LG P LT F +S L Sbjct 471 FFLEADLSKFDKSQGELHLEFQRLILINLGF-PVPLTNWWCDFHRSILSRWTLRPGVSIP 529 Query 423 FGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRC 482 + G F L+ + N ++A ++ + A F GDD++V + Sbjct 530 LLSKTNRGCFHLLWEHFSDNAMMAYCF---DMSTAELAMFSGDDSLVICGSKPEFDPGVF 586 Query 483 ATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGK 533 + NMEVK++D + PY C F+L +S G V DP++ + +L K Sbjct 587 QSLFNMEVKVMDPSL----PYICSKFLL-ESEFGDVFSVPDPMREIQRLQK 632 >RecName: Full=RNA replication protein; AltName: Full=ORF 1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Chrysanthemum virus B] Sequence ID: P37987.1 Length: 260 Range 1: 44 to 178 Score:42.7 bits(99), Expect:0.005, Method:Compositional matrix adjust., Identities:41/147(28%), Positives:64/147(43%), Gaps:12/147(8%) Query 368 ETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMM 427 E+D +FD S+D + L ++E LG+ +L+ + AF HL +K F M Sbjct 44 ESDYEAFDASQDQYIVAFELALMEYLGLPRDLIE--DYAF---IKCHLGSKLG-NFAIMR 97 Query 428 KSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLN 487 SG T NT+ NM+ LR + +S F GDD S++L + Sbjct 98 FSGEASTFLFNTMANMLFT--FLRYNIKDSEHICFAGDDMCA----SERLCIKKEHEGFL 151 Query 488 MEVKIIDAVVGEKAPYFCGGFILCDSV 514 ++K+ V P FCG + D + Sbjct 152 NKLKLKAKVFFVDKPTFCGWHLCPDGI 178 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein [Cucumber green mottle mosaic virus (watermelon strain W)] Sequence ID: P69515.1 Length: 153 Range 1: 12 to 97 Score:40.8 bits(94), Expect:0.008, Method:Composition-based stats., Identities:32/94(34%), Positives:47/94(50%), Gaps:12/94(12%) Query 460 AAFIGDDNIV---KGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTG 516 A+F GDD+++ KG++ + A W N E K+ G YFCG +I+ + Sbjct 12 ASFCGDDSLIYLPKGLEYPDIQATANLVW-NFEAKLFRKKYG----YFCGKYIIHHA--- 63 Query 517 TACRV-ADPLKRLFKLGKPLAVDDEHDDDRRRAL 549 C V DPLK + KLG V EH ++ R +L Sbjct 64 NGCIVYPDPLKLISKLGNKSLVGYEHVEEFRISL 97 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Q)] Sequence ID: P06012.1 Length: 839 Range 1: 234 to 679 Score:42.7 bits(99), Expect:0.009, Method:Compositional matrix adjust., Identities:110/490(22%), Positives:177/490(36%), Gaps:66/490(13%) Query 75 ITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNVVLKENFPT 134 I +L LG +L V C + P + + A + +V V V PT Sbjct 234 IDNATLLSNLGPFLL---PVHCSYSKTEDPDFVVDPSLARPTDRVDVHVVQAVCDTTLPT 290 Query 135 VASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTL 194 +Y + ++D D S +D + L + ++ P + + T Sbjct 291 HGNY-DDSFHQVFVDSAD-YSTDMDHVRLRQSDLVAKIPDGGHMLPVLNTGSGHQRVGTT 348 Query 195 QNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVN 254 + VL A KRN +V ++ + + N+ K E + N L + N VN Sbjct 349 KEVLTAIKKRNADVPELGD-------SVNLSRLSKAVA--ERFRLSYMNVDALAKSNFVN 399 Query 255 YITKL-----KGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQ 309 ++ K P + Y +L D I K DVK +RP Sbjct 400 VVSNFHAYMQKWPSSGLSYDDLPDLHAENLQFYDHMI---KSDVKPVVTDTLNVDRPVPA 456 Query 310 VIQAADPLATAYLCGIHRELVRRLNA-----VLLPNIHTLFDMSAEDFDAIIAEHFQPGD 364 I T+ + L R V+LP + + + F +++ +H Sbjct 457 TITFHKKTITSQFSPLFISLFERFQRCLRERVVLP-VGKISSLEMTGF-SVLNKH----- 509 Query 365 WVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFG 424 LE D++ FDKS+ + + IL DLG P +T F S I K K R G Sbjct 510 -CLEIDLSKFDKSQGEFHLMIQEHILNDLGC-PAPITKWWCDFHRFSYI----KDK-RAG 562 Query 425 AMM------KSGMFLTLFVNTVINMVIASRVLR----ERLTNSPCAAFIGDDNIVKGVKS 474 M ++G T F NT++ M + +RL F GDD++ Sbjct 563 VGMPISFQRRTGDAFTYFGNTIVTMAEFAWCYDTDQFDRLL------FSGDDSLAFSKLP 616 Query 475 DKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADP-LKRLFKLG- 532 + T NME K+++ V PY C F S+ R P ++ + +LG Sbjct 617 PVGDPSKFTTLFNMEAKVMEPAV----PYICSKFY---SLMSLVTRFQSPTIREIQRLGT 669 Query 533 KPLAVDDEHD 542 K + D +D Sbjct 670 KKIPYSDNND 679 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus Ct1] Sequence ID: Q9IVZ9.1 Length: 1707 Range 1: 1433 to 1569 Score:42.4 bits(98), Expect:0.012, Method:Compositional matrix adjust., Identities:41/146(28%), Positives:64/146(43%), Gaps:12/146(8%) Query 327 RELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGDWVLETDIASFDKSEDDAMALTA 386 R + + + A L PN+ + + ED A PG V E D + FD ++++ Sbjct 1433 RAIEKEILAALAPNV--FYGDAYEDTVLAAAVAGAPGCKVFENDFSEFDSTQNNFSLGLE 1490 Query 387 LMILEDLGVDP---ELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVNTVINM 443 +I+E+ G+ L L+ +A+ I K R SG TL NTV NM Sbjct 1491 CIIMEECGMPQWMIRLYHLVRSAW-----ILQAPKESLRGFWKKHSGEPGTLLWNTVWNM 1545 Query 444 VIASRVLRERLTNSPCAAFIGDDNIV 469 + + R + AAF GDD++V Sbjct 1546 AVIAHCYEFR--DLKVAAFKGDDSVV 1569 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83045.2 Length: 2379 Range 1: 2141 to 2305 Score:42.4 bits(98), Expect:0.013, Method:Compositional matrix adjust., Identities:41/175(23%), Positives:67/175(38%), Gaps:12/175(6%) Query 367 LETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAM 426 LE D + FDKS+ L M+ + G PEL G Sbjct 2141 LEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYFCRAKATCGVDLELGTQ 2200 Query 427 MKSGMFLTLFVNTVI--NMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRCAT 484 ++G T NT++ M+++S + + GDD+++ K Sbjct 2201 RRTGSPNTWLSNTLVTLGMMLSSY----DIDDIDLLLVSGDDSLIFSRKHLPNKTQEINK 2256 Query 485 WLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 539 ME K I+ + +PYFC FI+ + G + DP++ KL P+ +D Sbjct 2257 NFGMEAKYIE----KSSPYFCSKFIV--ELNGKLKVIPDPIRFFEKLSIPIRQED 2305 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 1366 to 1786 Score:42.4 bits(98), Expect:0.013, Method:Compositional matrix adjust., Identities:96/442(22%), Positives:162/442(36%), Gaps:31/442(7%) Query 144 YDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATK 203 +D Y S L+ + P K + L P +R+A+P QN + A K Sbjct 1366 FDGYEVSTSDISIELENCTVQPNKNVKVWQDKRGLVPVLRTAMPPKRQNLPVEAMLALKK 1425 Query 204 RNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKKNPIRLTEENVVNYITKLKGPK 263 RN P L A E ++ N E + + + + V + L+ K Sbjct 1426 RNMAA------PKLQEAVNEFEVIERTV--NRAKEIFFDTSL-IDDSEVSTRESNLRWWK 1476 Query 264 AAALYAKTH---NLDMLQDIPMDRFIMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATA 320 + AK +L ++ + + +K D K E +Q + D + A Sbjct 1477 RQSTTAKAQLKKETRLLHELDLCYYNYCIKGDEKPKMDRSPQHEYGALQTVVFPDKIVNA 1536 Query 321 YLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGD--WVLETDIASFDKSE 378 +E+ R+ L P++ M+AE+ + + E P + E D + FDKS+ Sbjct 1537 LFGPAMKEINERIRLALKPHVVYNSRMNAEELNRTV-EFLDPEEDFNAFEIDFSKFDKSK 1595 Query 379 DDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFRFGAMMKSGMFLTLFVN 438 + + + G++ L E + + KSG T N Sbjct 1596 TSLHIRAVIELYKLFGLNDLFALLWEKSQCQTKIRDFVNGITAYLLYQQKSGNCDTYGSN 1655 Query 439 TVINMVIASRVLRER--LTNSPCAAFIGDDNIVKGVKSDKLM--ADRCATWLNMEVKIID 494 T A+ L E L + F GDD+++ K + R A+ N + K+ D Sbjct 1656 T----WSAALALLESMPLEKAKFMIFGGDDSLILFPKHLTIEDPCRRLASLWNFDCKLFD 1711 Query 495 AVVGEKAPYFCGGFILCDSVTGTACRVA-DPLKRLFKLGKPLAVDDEHDDDRRRALQEES 553 K FCG F+L G + A DP+K + KLG+ VD + ++ + Sbjct 1712 F----KHNMFCGKFLL---KVGDRFKFAPDPMKLITKLGRKDIVDGRLLSEIFVSVGDNY 1764 Query 554 ARWNRVGIFSELCKAVESRYET 575 + I +L A+ RY T Sbjct 1765 RSYRDYRILEQLTYALRERYRT 1786