BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 27,754 sequences; 8,813,129 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subun... 860 0.0 sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subun... 654 0.0 sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subun... 642 0.0 sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subun... 617 0.0 sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subun... 580 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU O... 103 3e-24 sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU O... 95.9 1e-21 sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU O... 93.6 7e-21 sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU O... 93.6 7e-21 tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU... 86.7 2e-18 sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU O... 82.4 4e-17 tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding su... 50.1 1e-06 sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=E... 46.2 2e-05 tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS... 44.3 8e-05 tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease... 43.9 9e-05 tr|Q3SJR4|Q3SJR4_THIDA ATP-dependent zinc metalloprotease FtsH OS... 43.5 1e-04 sp|A1AZW1|RUVB_PARDP Holliday junction branch migration complex s... 43.1 1e-04 tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH OS... 43.5 2e-04 sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex s... 42.7 2e-04 sp|P0ABH9|CLPA_ECOLI ATP-dependent Clp protease ATP-binding subun... 43.1 2e-04 tr|Q3SJH1|Q3SJH1_THIDA ATP-dependent Clp protease, ATP-binding su... 42.7 3e-04 tr|A1BBJ2|A1BBJ2_PARDP ATP-dependent zinc metalloprotease FtsH OS... 41.6 6e-04 tr|A1AY35|A1AY35_PARDP Chaperone protein ClpB OS=Paracoccus denit... 41.6 7e-04 tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombinati... 40.8 9e-04 >sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 >sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=clpX PE=3 SV=1 Length=426 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/418 (77%), Positives = 358/418 (86%), Gaps = 2/418 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EIR LD YVIGQE+AKKVLAVAVYNHYKRL D + +ELGKSNIL+IG Sbjct 61 SGHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL++VI +R G GIGF A V+++ GE +VEPEDL+KFG Sbjct 241 TRNILFICGGAFAGLERVIQNRSARG-GIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL+EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL A+A Sbjct 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 +KA+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG S+PL+IY E Sbjct 360 RKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMIYENSE 417 >sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=clpX PE=3 SV=1 Length=423 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/415 (77%), Positives = 359/415 (87%), Gaps = 6/415 (1%) Query 1 MTDKRKDGSG-KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M DK GSG KLLYCSFCGKSQHEVRKLIAGPSV+ICDECV+LCNDIIREEI++ + Sbjct 1 MADK---GSGDKLLYCSFCGKSQHEVRKLIAGPSVFICDECVELCNDIIREEIQQADSQK 57 Query 60 ERSA-LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 S+ LPTPHEI LD YVIGQ QAKK LAVAVYNHYKRLR+ S VEL KSNILLI Sbjct 58 GASSDLPTPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLI 117 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQKCDYDV KA++ Sbjct 118 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAKQ 177 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRK+DNPSITRDVSGEGVQQALLKLIEGT A+VPPQGGRKHP QEF+QV Sbjct 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQV 237 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DTS ILFICGGAF+GL+KVI R E G GIGFGA VK + + ELL QVEPEDLIK+ Sbjct 238 DTSNILFICGGAFSGLEKVIRGRTEKG-GIGFGAQVKNVDENKRDAELLHQVEPEDLIKY 296 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL+EL E AL+QIL EPKNALTKQ+ LF +EGVDLEFRD+AL+AI Sbjct 297 GLIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAI 356 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 AK+A+ R+TGARGLRSI+E ALLDTMYDLPS++ V KVV+D ++I G+ +PLLIY Sbjct 357 AKRALLRRTGARGLRSIIEHALLDTMYDLPSLKGVSKVVVDNALISGEGQPLLIY 411 >sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=clpX PE=3 SV=1 Length=423 Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/415 (73%), Positives = 358/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 +S LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V+KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKIS KSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L +VEPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLREVEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQYQ LF +E V+LE R +AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+++ V KV+ID++VI+G KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIY 413 >sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=clpX PE=3 SV=1 Length=434 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/425 (71%), Positives = 354/425 (83%), Gaps = 4/425 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M +K+ K+L+CSFC KSQHEVRKLIAGPSV+ICDEC+DLCNDIIREE + A Sbjct 1 MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAI 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNILLIG 119 RS LPTP EI+ LD YVIGQ K++LAVAVYNHYKR+R+G+ + VEL KSNI+LIG Sbjct 61 RSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLA+TLAR+L+VPF MADATTLTEAGYVGEDVENIIQKLLQ C+YDV+KAQR Sbjct 121 PTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRA 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 I+YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP Q+F+QVD Sbjct 181 IIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T+ ILFI GGAF GL+KVI R E SGIGF A V+AKS++ GEL ++ EPEDLIKFG Sbjct 241 TTNILFIVGGAFDGLEKVIRDRTEK-SGIGFSAAVRAKSERGV-GELFSEAEPEDLIKFG 298 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPE +GRLPVVATL+EL E L+QIL EPKNAL KQ+Q LF +EG +L+ R +AL AI+ Sbjct 299 LIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAIS 358 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 +KA+ RKTGARGLRSI+E ALLDTMYDLPS +V +VV++ + ++G KPLLIY E++ Sbjct 359 RKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGVGKPLLIYAD-ESE 417 Query 420 QASGE 424 ASGE Sbjct 418 AASGE 422 >sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpX PE=3 SV=1 Length=421 Score = 580 bits (1495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/416 (71%), Positives = 346/416 (83%), Gaps = 5/416 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K A + +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSSA-LKSGDGVPTPR 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI N LDDYVIGQE AK+VL+VAV+NHYKRL N + +EL KSNILLIGPTG GKTLL Sbjct 68 EICNVLDDYVIGQEHAKRVLSVAVHNHYKRL-NHSSKTDIELAKSNILLIGPTGCGKTLL 126 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+DK Sbjct 127 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDK 186 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 I+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 187 ITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 246 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++I+ R G+ +GFGA VK DK GEL Q+EPEDL+KFGLIPEF+GRL Sbjct 247 GAFAGLDRIIAQR-NKGTAMGFGAAVKEDDDKGV-GELFKQLEPEDLLKFGLIPEFVGRL 304 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALI IL +PKNAL KQYQ LF+LE V L F ++AL AIAK+A+ RKTG Sbjct 305 PVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTG 364 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDG-QSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP M+ VE+VV++E +D +KPLLI+ + + AS Sbjct 365 ARGLRSIMEDILLDTMFDLPGMDSVEEVVVNEEAVDNPTAKPLLIHTDSKKETASA 420 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=hslU PE=3 SV=1 Length=435 Score = 103 bits (257), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 83/144 (58%), Gaps = 6/144 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T ++ LARL PF +AT TE GYVG DVE II+ L + ++ R DE Sbjct 64 TEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMR-----DE 118 Query 186 IDKISRKSDNPSITRDVSGEGVQQ 209 + + KS + ++GEG ++ Sbjct 119 VKARAHKSAEDRVVAALAGEGARE 142 Score = 94.4 bits (233), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/233 (33%), Positives = 107/233 (46%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 + GIV+IDEIDK++ ++D DVS EGVQ+ LL LIEGT + ++ Sbjct 241 ENGIVFIDEIDKVAARTDARG--GDVSREGVQRDLLPLIEGTTVST-----------KYG 287 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 288 PVRTDHILFIASGAF--------H----------------------------IAKPSDLL 311 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE I+IL E NALT+QY AL EGV ++F + + Sbjct 312 -----PELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQDGIR 366 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A+ A GAR L +++E + + P E VV+D + ++ Sbjct 367 ALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSG-ETVVVDAAFVE 418 >sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=hslU PE=3 SV=1 Length=447 Score = 95.9 bits (237), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/169 (37%), Positives = 92/169 (54%), Gaps = 21/169 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRA-EVTPKNILMIGPTGVGK 62 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T +A LARL + PF +AT TE GYVG DVE+II+ D+ A ++ E Sbjct 63 TEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIR--------DLADAAVKMLREQE 114 Query 186 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 I K+ +++ D + E + ALL AA P G P +E Sbjct 115 IQKVKYRAE------DAAEERILDALLP------AARPAMGFGDEPARE 151 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/238 (31%), Positives = 104/238 (44%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI+++++ DVS EGVQ+ LL LIEG + Sbjct 249 QHGIVFIDEIDKIAKRANAGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 295 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DL+ Sbjct 296 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLV 319 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS +IL EP +LT+QY+ L EG+ +EF ++ + Sbjct 320 -----PELQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL S + ++ID ++ Sbjct 375 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSH 432 >sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU OS=Escherichia coli (strain K12) OX=83333 GN=hslU PE=1 SV=1 Length=443 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ+ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF + SD Sbjct 297 -VKTDHILFIASGAF---------------------QIAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + YD Sbjct 375 RIAEAAWQVNESTENIGARRLHTVLERLMEEISYD 409 >sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=hslU PE=3 SV=1 Length=444 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 48/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 7 TPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRH-EIHPKNILMIGPTGVGK 65 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 T +A LA+L + PF +AT TE GYVG DV+ II+ L +Y +++ + Sbjct 66 TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDL---TEYSIKQTR 114 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 103/235 (44%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ + + DVS +GVQ+ LL L+EGT + Sbjct 250 QNGIVFLDEIDKIAARQETGGA--DVSRQGVQRDLLPLVEGTTV-----------NTRYG 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 297 MVRTDHILFIASGAFH----------------------------------LAR--PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS E + IL E +L KQY AL E V LEF D+ + Sbjct 321 -----PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIR 375 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A + GAR L +++E L + +D S E + ID + +D Q Sbjct 376 RLAELAFSVNERTENIGARRLYTVMEKLLEELSFD-ASANSGEVITIDAAYVDLQ 429 >tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=hslU PE=3 SV=1 Length=438 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 102/236 (43%), Gaps = 66/236 (28%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ +SD DVS +GVQ+ LL LIEGT + ++ Sbjct 245 QNGIVFLDEIDKIATRSDAHG--SDVSRQGVQRDLLPLIEGTTVST-----------KYG 291 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DLI Sbjct 292 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLI 315 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL LT+QY+AL EGV L F + + Sbjct 316 -----PELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATEGVALRFTEGGIR 370 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 407 IA+ A GAR L +++E L D +D S V E VID ++ Sbjct 371 RIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGS-------VTGEHVIDAEA 419 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 2 TPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 60 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T +A LARL + PF +AT TE GYVG DV+ I++ L++ Sbjct 61 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETA 104 >sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 101/233 (43%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ ++ +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNHEGG-GGEVSRQGVQRDLLPLVEGTTI-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS + IL +L KQYQAL E V LEF D+ + Sbjct 324 -----PELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQALLATEDVKLEFADDGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E LL+ + + V ID + +D Sbjct 379 RLAEIAYAVNEKTENIGARRLYTVIE-KLLEEVSFAAGNHAGQSVTIDSAYVD 430 >tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding subunit clpA OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=Pden_3812 PE=3 SV=1 Length=772 Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/315 (24%), Positives = 119/315 (38%), Gaps = 72/315 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A + L+ A+ LR + G N L GPTG GKT +A+ LA Sbjct 465 LKRLVFGQDAAIEALSSAIKLARAGLREPEKPIG------NYLFAGPTGVGKTEVAKQLA 518 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 L V D + E GYVG D ++ V + ++ Sbjct 519 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTD-------GVDQHPHCVLL 571 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 242 +DEI+K + V LL++++ + GR QVD Sbjct 572 LDEIEK--------------AHPDVYNILLQVMDH--GKLTDHNGR--------QVDFRN 607 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 ++ I + + + GFG + D A+ I+ P Sbjct 608 VILI-------MTSNAGAADQAKAAFGFGRERREGEDTAA-------------IERTFTP 647 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EF RL V + LS E ++Q++++ Q +A GV +E EA D +A++ Sbjct 648 EFRNRLDAVISFAPLSREIIVQVVEK----FVLQLEAQLIDRGVHIELTAEAADWLAERG 703 Query 363 MARKTGARGLRSIVE 377 K GAR L +++ Sbjct 704 YDEKMGARPLGRVIQ 718 >sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain K12) OX=83333 GN=ftsH PE=1 SV=1 Length=644 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=631 Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTLLA +A VPF + E +VG + Q +K Sbjct 191 LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 244 Query 176 AQRGIVYIDEIDKISR 191 + IV+IDEID + R Sbjct 245 SAPCIVFIDEIDAVGR 260 >tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease FtsH OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=ftsH PE=3 SV=1 Length=628 Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 190 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 244 KHAPCIVFIDEIDAVGR 260 >tr|Q3SJR4|Q3SJR4_THIDA ATP-dependent zinc metalloprotease FtsH OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=ftsH PE=3 SV=1 Length=630 Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA ++A VPF + E +VG + Q + Sbjct 190 VLMVGPPGTGKTLLARSIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISRK 192 K I++IDEID + R+ Sbjct 244 KNAPCIIFIDEIDAVGRQ 261 >sp|A1AZW1|RUVB_PARDP Holliday junction branch migration complex subunit RuvB OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ruvB PE=3 SV=1 Length=341 Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/127 (30%), Positives = 57/127 (45%), Gaps = 30/127 (24%) Query 72 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAET 131 L+D+V GQ +A+ L V + + R + D + L GP G GKT LA+ Sbjct 25 QRLEDFV-GQAEARANLRVFIESARMRGKAMD----------HTLFHGPPGLGKTTLAQI 73 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 +AR L V F M L AG D+ I+ L R +++IDEI ++ Sbjct 74 MARELGVNFKMTSGPVLARAG----DLAAILTNL----------EARDVLFIDEIHRM-- 117 Query 192 KSDNPSI 198 NP++ Sbjct 118 ---NPAV 121 >tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=ftsH PE=3 SV=1 Length=639 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 190 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFDQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 244 KHAPCIIFIDEIDAVGR 260 >sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex subunit RuvB OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=ruvB PE=3 SV=1 Length=343 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 54/118 (46%), Gaps = 27/118 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 LDDY IGQ +AK+ LA+ + KR D ++LL GP G GKT LA +A Sbjct 37 LDDY-IGQHKAKEQLAIFIQAAKKRGEALD----------HVLLFGPPGLGKTTLAHIIA 85 Query 134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD-YDVQKAQRGIVYIDEIDKIS 190 + L V L AG + LL D +DV ++IDEI ++S Sbjct 86 KELGVNLRQTSGPVLERAGDLA--------ALLTNLDPHDV-------LFIDEIHRLS 128 >sp|P0ABH9|CLPA_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpA OS=Escherichia coli (strain K12) OX=83333 GN=clpA PE=1 SV=1 Length=758 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (51%), Gaps = 16/89 (18%) Query 112 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADATT--------LTEAGYVGEDVEN 160 K+N LL+G +G GKT +AE LA + DVP MAD T L Y G D E Sbjct 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265 Query 161 IIQKLLQKCDYDVQKAQRGIVYIDEIDKI 189 + LL++ + D I++IDEI I Sbjct 266 RFKALLKQLEQDTN----SILFIDEIHTI 290 >tr|Q3SJH1|Q3SJH1_THIDA ATP-dependent Clp protease, ATP-binding subunit OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=Tbd_1237 PE=3 SV=1 Length=750 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 123/325 (38%), Gaps = 74/325 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A L+ A+ L N G N L GPTG GKT +A LA Sbjct 455 LKAVVYGQDAAIDALSTAIKMSRSGLGNPQKPIG------NFLFSGPTGVGKTEVARQLA 508 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 +L V D + E GYVG D ++ + + K Y +V Sbjct 509 YVLGVELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKHPY-------AVVL 561 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTS 241 +DE++K +P I LL++++ GT+ GRK +F V Sbjct 562 LDEVEKA-----HPDIF---------NVLLQVMDHGTLTDT---NGRK---ADFRNV--- 598 Query 242 KILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLI 301 +L + A A + + IGF A + D+ E IK Sbjct 599 -VLIMTTNAGA--------EMLNKATIGF-AGARESGDEMGE------------IKRMFT 636 Query 302 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 361 PEF RL + LSE ++Q++++ Q + + + V+ F D +AK Sbjct 637 PEFRNRLDAIIPFAPLSEPVILQVVEK----FLMQLEEQLHEKKVEAVFTDALKAYLAKH 692 Query 362 AMARKTGARGLRSIVEAALLDTMYD 386 GAR + +++ + + D Sbjct 693 GFDPSMGARPMARLIQDTIRKALAD 717 >tr|A1BBJ2|A1BBJ2_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=610 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/85 (31%), Positives = 44/85 (52%), Gaps = 6/85 (7%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A V F + E +VG ++ L ++ + Sbjct 192 VLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVEL-FVGVGAAR-VRDLFEQA----R 245 Query 175 KAQRGIVYIDEIDKISRKSDNPSIT 199 K+ I++IDE+D + R ++ T Sbjct 246 KSAPAIIFIDELDALGRARNSGQFT 270 >tr|A1AY35|A1AY35_PARDP Chaperone protein ClpB OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpB PE=3 SV=1 Length=875 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 79/348 (23%), Positives = 135/348 (39%), Gaps = 84/348 (24%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L VIGQ +A A+ N +R R G LG + L +GPTG GKT L + +A Sbjct 564 LSKRVIGQSEA----VTAISNAVRRARAGLNDPKRPLG--SFLFLGPTGVGKTELTKAIA 617 Query 134 RLL---DVPFTMADATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L D D + E GYVG D ++ + +++ Y V Sbjct 618 EYLFDDDSAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQV------ 671 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 + DE++K D ++ V +G +L +G GR VD Sbjct 672 -ILFDEVEKA--HPDVFNVLLQVLDDG------QLTDGQ--------GRT--------VD 706 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 + L + S +G A + A + A G+ AQV D ++ Sbjct 707 FKQTLIVL-----------------TSNLGAQA-LSALPEGADSGQARAQV--MDAVRAH 746 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 PEF+ RL + + L+ E + I++ Q + + L+ + AL +A Sbjct 747 FRPEFLNRLDEIIIFHRLTRENMDGIVR----IQLWQLETRLAQHKIGLDLDEAALKWLA 802 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 407 + GAR L+ +++ +L + + ++ ++ V+DGQ+ Sbjct 803 DEGYDPVFGARPLKRVMQRSLQNPLAEM---------ILAGEVLDGQT 841 >tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombination protein A OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=NMA1433 PE=3 SV=1 Length=436 Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/156 (27%), Positives = 68/156 (44%), Gaps = 29/156 (19%) Query 65 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSN-ILLIGPTGS 123 P +R H D V+GQE + K LR VE GK + +LL GP G Sbjct 12 PLAERLRPHTLDDVVGQEH--------LIGEGKPLRVA-----VEGGKPHSMLLWGPPGV 58 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKT LA LA+ + F A V V++ I++ + K + +Q+ + I+++ Sbjct 59 GKTTLARILAQSFNAQFLPVSA--------VFSGVKD-IREAIDKAEIALQQGRATILFV 109 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTV 219 DE+ + ++ + + V+ LL I T Sbjct 110 DEVHRFNKAQQDAFLPH------VESGLLTFIGATT 139 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1971281975 Database: proteomes.fasta Posted date: May 2, 2024 5:43 PM Number of letters in database: 8,813,129 Number of sequences in database: 27,754 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40