ID FJ966976; SV 1; linear; viral cRNA; STD; VRL; 2280 BP. XX AC FJ966976; XX PR Project:37813; XX DT 28-APR-2009 (Rel. 100, Created) DT 30-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Influenza A virus (A/California/07/2009(H1N1)) segment 1 polymerase PB2 DE (PB2) gene, complete cds. XX KW . XX OS Influenza A virus (A/California/07/2009(H1N1)) OC Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. XX RN [1] RP 1-2280 RA Shu B., Balish A., Garten R., Smith C., Emery S., Barnes J., Deyde V., RA Klimov A., Cox N.; RT "Human infection with novel swine H1N1 influenza"; RL Unpublished. XX RN [2] RP 1-2280 RA Shu B., Balish A., Garten R., Smith C., Emery S., Barnes J., Deyde V., RA Klimov A., Cox N.; RT ; RL Submitted (27-APR-2009) to the EMBL/GenBank/DDBJ databases. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL Atlanta, 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX CC Swine influenza A (H1N1) virus isolated during human swine flu CC outbreak of 2009. For more information, see http://www.cdc.gov/ CC Some of the information does not have GenBank feature identifiers CC and is being provided in the comment section. CC ##EpifluData-START## CC Isolate A/California/07/2009 CC Subtype H1N1 CC Segment_name PB2 CC Host_gender M CC Host_age 54 CC Passage_history M1 CC Adamantane_resistance resistant CC Zanamivir_resistance sensitive CC Oseltamivir_resistance sensitive CC Country USA CC State/Province California state CC Collection_day 9 CC Collection_month 4 CC Collection_year 2009 CC EPI_accession EPI176502 CC ##EpifluData-END## XX FH Key Location/Qualifiers FH FT source 1..2280 FT /organism="Influenza A virus (A/California/07/2009(H1N1))" FT /segment="1" FT /host="Homo sapiens; gender M; age 54" FT /strain="A/California/07/2009" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:California state" FT /collection_date="09-Apr-2009" FT /db_xref="taxon:641809" FT gene 1..2280 FT /gene="PB2" FT CDS 1..2280 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="ACP41956.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMRYPITADKRIMDMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQDCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIESIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2280 BP; 768 A; 433 C; 589 G; 490 T; 0 other; atggagagaa taaaagaact gagagatcta atgtcgcagt cccgcactcg cgagatactc 60 actaagacca ctgtggacca tatggccata atcaaaaagt acacatcagg aaggcaagag 120 aagaaccccg cactcagaat gaagtggatg atggcaatga gatacccaat tacagcagac 180 aagagaataa tggacatgat tccagagagg aatgaacaag gacaaaccct ctggagcaaa 240 acaaacgatg ctggatcaga ccgagtgatg gtatcacctc tggccgtaac atggtggaat 300 aggaatggcc caacaacaag tacagttcat taccctaagg tatataaaac ttatttcgaa 360 aaggtcgaaa ggttgaaaca tggtaccttc ggccctgtcc acttcagaaa tcaagttaaa 420 ataaggagga gagttgatac aaaccctggc catgcagatc tcagtgccaa ggaggcacag 480 gatgtgatta tggaagttgt tttcccaaat gaagtggggg caagaatact gacatcagag 540 tcacagctgg caataacaaa agagaagaaa gaagagctcc aggattgtaa aattgctccc 600 ttgatggtgg cgtacatgct agaaagagaa ttggtccgta aaacaaggtt tctcccagta 660 gccggcggaa caggcagtgt ttatattgaa gtgttgcact taacccaagg gacgtgctgg 720 gagcagatgt acactccagg aggagaagtg agaaatgatg atgttgacca aagtttgatt 780 atcgctgcta gaaacatagt aagaagagca gcagtgtcag cagacccatt agcatctctc 840 ttggaaatgt gccacagcac acagattgga ggagtaagga tggtggacat ccttagacag 900 aatccaactg aggaacaagc cgtagacata tgcaaggcag caatagggtt gaggattagc 960 tcatctttca gttttggtgg gttcactttc aaaaggacaa gcggatcatc agtcaagaaa 1020 gaagaagaag tgctaacggg caacctccaa acactgaaaa taagagtaca tgaagggtat 1080 gaagaattca caatggttgg gagaagagca acagctattc tcagaaaggc aaccaggaga 1140 ttgatccagt tgatagtaag cgggagagac gagcagtcaa ttgctgaggc aataattgtg 1200 gccatggtat tctcacagga ggattgcatg atcaaggcag ttaggggcga tctgaacttt 1260 gtcaataggg caaaccagcg actgaacccc atgcaccaac tcttgaggca tttccaaaaa 1320 gatgcaaaag tgcttttcca gaactgggga attgaatcca tcgacaatgt gatgggaatg 1380 atcggaatac tgcccgacat gaccccaagc acggagatgt cgctgagagg gataagagtc 1440 agcaaaatgg gagtagatga atactccagc acggagagag tggtagtgag tattgaccga 1500 tttttaaggg ttagagatca aagagggaac gtactattgt ctcccgaaga agtcagtgaa 1560 acgcaaggaa ctgagaagtt gacaataact tattcgtcat caatgatgtg ggagatcaat 1620 ggccctgagt cagtgctagt caacacttat caatggataa tcaggaactg ggaaattgtg 1680 aaaattcaat ggtcacaaga tcccacaatg ttatacaaca aaatggaatt tgaaccattt 1740 cagtctcttg tccctaaggc aaccagaagc cggtacagtg gattcgtaag gacactgttc 1800 cagcaaatgc gggatgtgct tgggacattt gacactgtcc aaataataaa acttctcccc 1860 tttgctgctg ccccaccaga acagagtagg atgcaatttt cctcattgac tgtgaatgtg 1920 agaggatcag ggttgaggat actggtaaga ggcaattctc cagtattcaa ttacaacaag 1980 gcaaccaaac gacttacagt tcttggaaag gatgcaggtg cattgactga agatccagat 2040 gaaggcacat ctggggtgga gtctgctgtc ctgagaggat ttctcatttt gggcaaagaa 2100 gacaagagat atggcccagc attaagcatc aatgaactga gcaatcttgc aaaaggagag 2160 aaggctaatg tgctaattgg gcaaggggac gtagtgttgg taatgaaacg aaaacgggac 2220 tctagcatac ttactgacag ccagacagcg accaaaagaa ttcggatggc catcaattag 2280 //