SWISSPROT:ALFC_ORYSJ Q40677 Q40677 Fructose-bisphosphate aldolase, chloroplastic; Oryza sativa subsp. japonica (Rice). Chloroplast Direct protein sequencing Glycolysis Lyase Plastid Schiff base Transit peptide 388 SWISSPROT:ALF_ORYSJ P17784 P17784 Fructose-bisphosphate aldolase cytoplasmic isozyme; FBA Oryza sativa subsp. japonica (Rice). Cytoplasm Direct protein sequencing Glycolysis Lyase Schiff base Stress response 358 SWISSPROT:AMT11_ORYSJ Q7XQ12 Q7XQ12 Ammonium transporter 1 member 1; AMT1-1 Oryza sativa subsp. japonica (Rice). Ammonia transport Membrane Transmembrane Transport 498 SWISSPROT:AMT13_ORYSJ Q6K9G3 Q6K9G3 Ammonium transporter 1 member 3; AMT1-3 Oryza sativa subsp. japonica (Rice). Ammonia transport Membrane Transmembrane Transport 498 SWISSPROT:AMT21_ORYSJ Q84KJ7 Q84KJ7 Ammonium transporter 2 member 1; AMT2-1 Oryza sativa subsp. japonica (Rice). Ammonia transport Cell membrane Membrane Transmembrane Transport 486 SWISSPROT:ARF2_ORYSJ P51823 P51823 ADP-ribosylation factor 2; ARF Oryza sativa subsp. japonica (Rice). ER-Golgi transport Golgi apparatus GTP-binding Lipoprotein Myristate Nucleotide-binding Protein transport Transport 181 SWISSPROT:ATG4B_ORYSI Q2XPP4 Q2XPP4 Cysteine protease ATG4B; ATG4B Oryza sativa subsp. indica (Rice). Autophagy Cytoplasm Hydrolase Protease Protein transport Thiol protease Transport Ubl conjugation pathway 478 SWISSPROT:ATG8A_ORYSI Q2XPP5 Q2XPP5 Autophagy-related protein 8A; ATG8A Oryza sativa subsp. indica (Rice). Autophagy Cytoplasmic vesicle Lipoprotein Membrane Microtubule Protein transport Transport Ubl conjugation pathway Vacuole 119 SWISSPROT:ATPBM_ORYSJ Q01859 Q01859 ATP synthase subunit beta, mitochondrial; ATPB Oryza sativa subsp. japonica (Rice). ATP synthesis ATP-binding CF(1) Direct protein sequencing Hydrogen ion transport Hydrolase Ion transport Membrane Mitochondrion Mitochondrion inner membrane Nucleotide-binding Transit peptide Transport 552 SWISSPROT:BGL06_ORYSJ Q8L7J2 Q8L7J2 Beta-glucosidase 6; BGLU6 Oryza sativa subsp. japonica (Rice). 3D-structure Disulfide bond Glycoprotein Glycosidase Hydrolase Metal-binding Secreted Signal Zinc 521 SWISSPROT:BGL07_ORYSJ Q75I93 Q75I93 Beta-glucosidase 7; BGLU7 Oryza sativa subsp. japonica (Rice). 3D-structure Disulfide bond Glycoprotein Glycosidase Hydrolase Metal-binding Secreted Signal Zinc 504 SWISSPROT:C3H2_ORYSJ Q9FU27 Q9FU27 Zinc finger CCCH domain-containing protein 2; Oryza sativa subsp. japonica (Rice). DNA-binding Metal-binding Nucleus Repeat Zinc Zinc-finger 386 SWISSPROT:C724B_ORYSJ Q6F4F5 Q6F4F5 Cytochrome P450 724B1; CYP724B1 Oryza sativa subsp. japonica (Rice). Heme Iron Lipid synthesis Membrane Metal-binding Monooxygenase Oxidoreductase Steroid biosynthesis Transmembrane 480 SWISSPROT:C85A1_ORYSJ Q8GSQ1 Q8GSQ1 Cytochrome P450 85A1; CYP85A1 Oryza sativa subsp. japonica (Rice). Heme Iron Membrane Metal-binding Monooxygenase Oxidoreductase Transmembrane 469 SWISSPROT:CBP1_ORYSJ P37890 P37890 Serine carboxypeptidase 1; CBP1 Oryza sativa subsp. japonica (Rice). Carboxypeptidase Disulfide bond Glycoprotein Hydrolase Protease Signal Zymogen 510 SWISSPROT:CBP3_ORYSJ P37891 P37891 Serine carboxypeptidase 3; CBP3 Oryza sativa subsp. japonica (Rice). Carboxypeptidase Disulfide bond Glycoprotein Hydrolase Protease Signal Zymogen 500 SWISSPROT:CBPX_ORYSJ P52712 P52712 Serine carboxypeptidase-like; CBP31 Oryza sativa subsp. japonica (Rice). Carboxypeptidase Disulfide bond Glycoprotein Hydrolase Protease Signal 429 SWISSPROT:DCL4_ORYSJ A7LFZ6 A7LFZ6 Endoribonuclease Dicer homolog 4; DCL4 Oryza sativa subsp. japonica (Rice). Alternative splicing ATP-binding Endonuclease Helicase Hydrolase Leucine-rich repeat Magnesium Manganese Metal-binding Nuclease Nucleotide-binding Nucleus Repeat RNA-binding RNA-mediated gene silencing 1657 SWISSPROT:DNM1A_ORYSJ Q7Y1I7 Q7Y1I7 DNA (cytosine-5)-methyltransferase 1A; MET1A Oryza sativa subsp. japonica (Rice). Alternative splicing DNA-binding Methyltransferase Nucleus Repeat S-adenosyl-L-methionine Transferase 1527 SWISSPROT:DPOLA_ORYSJ O48653 O48653 DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). DNA replication DNA-binding DNA-directed DNA polymerase Nucleotidyltransferase Nucleus Transferase 1534 SWISSPROT:EHD1_ORYSI Q7Y0W3 Q7Y0W3 Two-component response regulator EHD1; Oryza sativa subsp. indica (Rice). Activator DNA-binding Flowering Nucleus Phosphoprotein Transcription Transcription regulation Two-component regulatory system 341 SWISSPROT:EHD1_ORYSJ Q7Y0W5 Q7Y0W5 Two-component response regulator EHD1; EHD1 Oryza sativa subsp. japonica (Rice). Activator DNA-binding Flowering Nucleus Phosphoprotein Transcription Transcription regulation Two-component regulatory system 341 SWISSPROT:G6PIA_ORYSJ P42862 P42862 Glucose-6-phosphate isomerase, cytosolic A; Oryza sativa subsp. japonica (Rice). Cytoplasm Gluconeogenesis Glycolysis Isomerase 567 SWISSPROT:G6PIB_ORYSJ P42863 P42863 Glucose-6-phosphate isomerase, cytosolic B; Oryza sativa subsp. japonica (Rice). Cytoplasm Gluconeogenesis Glycolysis Isomerase 567 SWISSPROT:GENL1_ORYSJ Q64MA3 Q64MA3 Flap endonuclease GEN-like 1; RAD Oryza sativa subsp. japonica (Rice). DNA damage DNA repair Endonuclease Hydrolase Magnesium Metal-binding Nuclease Nucleus 629 SWISSPROT:GLGB_ORYSJ Q01401 Q01401 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic; SBE1 Oryza sativa subsp. japonica (Rice). Acetylation Alternative splicing Amyloplast Chloroplast Direct protein sequencing Glycosyltransferase Plastid Starch biosynthesis Transferase Transit peptide 820 SWISSPROT:GLGS_ORYSJ P15280 P15280 Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic; AGPS Oryza sativa subsp. japonica (Rice). Allosteric enzyme Alternative splicing Amyloplast ATP-binding Chloroplast Nucleotide-binding Nucleotidyltransferase Plastid Starch biosynthesis Transferase Transit peptide 514 SWISSPROT:IDEF1_ORYSJ Q6Z1Z3 Q6Z1Z3 B3 domain-containing protein IDEF1; IDEF1 Oryza sativa subsp. japonica (Rice). DNA-binding Nucleus Transcription Transcription regulation 362 SWISSPROT:IDEFH_ORYSJ Q7XKC5 Q7XKC5 B3 domain-containing protein Os04g0676600; Oryza sativa subsp. japonica (Rice). DNA-binding Nucleus Transcription Transcription regulation 433 SWISSPROT:ILV5_ORYSJ Q65XK0 Q65XK0 Ketol-acid reductoisomerase, chloroplastic; Oryza sativa subsp. japonica (Rice). 3D-structure Amino-acid biosynthesis Branched-chain amino acid biosynthesis Chloroplast Magnesium Metal-binding NADP Oxidoreductase Plastid Transit peptide 578 SWISSPROT:KNOS6_ORYSJ P46609 P46609 Homeobox protein knotted-1-like 6; OSH1 Oryza sativa subsp. japonica (Rice). Alternative splicing DNA-binding Homeobox Nucleus Transcription Transcription regulation 361 SWISSPROT:LFL1_ORYSJ A4LBC0 A4LBC0 B3 domain-containing protein LFL1; LFL1 Oryza sativa subsp. japonica (Rice). DNA-binding Flowering Nucleus Repressor Transcription Transcription regulation 402 SWISSPROT:LOX2_ORYSJ P29250 P29250 Lipoxygenase 2; LOX1.1 Oryza sativa subsp. japonica (Rice). Cytoplasm Dioxygenase Fatty acid biosynthesis Iron Lipid synthesis Metal-binding Oxidoreductase Oxylipin biosynthesis 870 SWISSPROT:LOXC1_ORYSJ P38419 P38419 Lipoxygenase 7, chloroplastic; CM-LOX1 Oryza sativa subsp. japonica (Rice). Chloroplast Dioxygenase Fatty acid biosynthesis Iron Lipid synthesis Metal-binding Oxidoreductase Oxylipin biosynthesis Plastid Transit peptide 924 SWISSPROT:MAD13_ORYSJ Q2QW53 Q2QW53 MADS-box transcription factor 13; MADS13 Oryza sativa subsp. japonica (Rice). Alternative splicing DNA-binding Nucleus Transcription Transcription regulation 270 SWISSPROT:MAD15_ORYSJ Q6Q9I2 Q6Q9I2 MADS-box transcription factor 15; MADS15 Oryza sativa subsp. japonica (Rice). DNA-binding Nucleus Transcription Transcription regulation 267 SWISSPROT:MAD17_ORYSJ Q7XUN2 Q7XUN2 MADS-box transcription factor 17; MADS17 Oryza sativa subsp. japonica (Rice). DNA-binding Nucleus Transcription Transcription regulation 249 SWISSPROT:MAD22_ORYSJ Q9XJ66 Q9XJ66 MADS-box transcription factor 22; MADS22 Oryza sativa subsp. japonica (Rice). Developmental protein Differentiation DNA-binding Flowering Nucleus Transcription Transcription regulation 228 SWISSPROT:MAD47_ORYSJ Q5K4R0 Q5K4R0 MADS-box transcription factor 47; MADS47 Oryza sativa subsp. japonica (Rice). Alternative splicing DNA-binding Nucleus Transcription Transcription regulation 246 SWISSPROT:MADS6_ORYSJ Q6EU39 Q6EU39 MADS-box transcription factor 6; MADS6 Oryza sativa subsp. japonica (Rice). Activator Developmental protein Differentiation DNA-binding Flowering Nucleus Transcription Transcription regulation 250 SWISSPROT:MADS8_ORYSJ Q9SAR1 Q9SAR1 MADS-box transcription factor 8; MADS8 Oryza sativa subsp. japonica (Rice). Developmental protein Differentiation DNA-binding Flowering Nucleus Transcription Transcription regulation 248 SWISSPROT:MEL1_ORYSJ Q851R2 Q851R2 Protein argonaute MEL1; MEL1 Oryza sativa subsp. japonica (Rice). Meiosis Nucleus RNA-mediated gene silencing 1058 SWISSPROT:MFP_ORYSJ Q8W1L6 Q8W1L6 Peroxisomal fatty acid beta-oxidation multifunctional protein; MFP Oryza sativa subsp. japonica (Rice). Cytoplasm Cytoskeleton Direct protein sequencing Fatty acid metabolism Isomerase Lipid metabolism Lyase Microtubule Multifunctional enzyme NAD Oxidoreductase Peroxisome RNA-binding 726 SWISSPROT:NIP21_ORYSJ Q6Z2T3 Q6Z2T3 Aquaporin NIP2-1; NIP2-1 Oryza sativa subsp. japonica (Rice). Cell membrane Glycoprotein Membrane Repeat Transmembrane Transport 298 SWISSPROT:PIN1_ORYSJ Q5SMQ9 Q5SMQ9 Auxin efflux carrier component 1; PIN1 Oryza sativa subsp. japonica (Rice). Auxin signaling pathway Glycoprotein Membrane Transmembrane Transport 595 SWISSPROT:PLA22_ORYSJ Q9XG81 Q9XG81 Probable phospholipase A2 homolog 2; PLA2-II Oryza sativa subsp. japonica (Rice). 3D-structure Calcium Disulfide bond Hydrolase Lipid degradation Metal-binding Secreted Signal 153 SWISSPROT:PLA23_ORYSJ Q10E50 Q10E50 Phospholipase A2 homolog 3; PLA2-III Oryza sativa subsp. japonica (Rice). Calcium Direct protein sequencing Disulfide bond Hydrolase Lipid degradation Metal-binding Secreted Signal 163 SWISSPROT:PNH1_ORYSJ Q69VD5 Q69VD5 Protein argonaute PNH1; PHN1 Oryza sativa subsp. japonica (Rice). Cytoplasm Developmental protein RNA-mediated gene silencing 979 SWISSPROT:RA05_ORYSJ Q01881 Q01881 Seed allergenic protein RA5; RA5 Oryza sativa subsp. japonica (Rice). Allergen Disulfide bond Secreted Signal 160 SWISSPROT:RAG1_ORYSJ Q01883 Q01883 Seed allergenic protein RAG1; RAG1 Oryza sativa subsp. japonica (Rice). Allergen Disulfide bond Secreted Signal 163 SWISSPROT:RAG2_ORYSJ Q01882 Q01882 Seed allergenic protein RAG2; RAG2 Oryza sativa subsp. japonica (Rice). Allergen Disulfide bond Secreted Signal 166 SWISSPROT:TBP1_ORYSJ Q9LL45 Q9LL45 Telomere-binding protein 1; TBP1 Oryza sativa subsp. japonica (Rice). 3D-structure Chromosomal protein DNA-binding Telomere 633 SWISSPROT:TRAB1_ORYSJ Q6ZDF3 Q6ZDF3 bZIP transcription factor TRAB1; TRAB1 Oryza sativa subsp. japonica (Rice). Abscisic acid signaling pathway Activator DNA-binding Nucleus Transcription Transcription regulation 318 SWISSPROT:VIV_ORYSJ P37398 P37398 B3 domain-containing protein VP1; VP1 Oryza sativa subsp. japonica (Rice). Abscisic acid signaling pathway Activator Alternative splicing Developmental protein DNA-binding Nucleus Transcription Transcription regulation 727 SWISSPROT:YAB1_ORYSJ Q7XIM7 Q7XIM7 Protein YABBY 1; YAB1 Oryza sativa subsp. japonica (Rice). Developmental protein Differentiation DNA-binding Flowering Metal-binding Nucleus Zinc Zinc-finger 169 SWISSPROT:YABDL_ORYSJ Q76EJ0 Q76EJ0 Protein DROOPING LEAF; DL Oryza sativa subsp. japonica (Rice). Developmental protein Differentiation DNA-binding Flowering Metal-binding Nucleus Zinc Zinc-finger 194