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Parameters
| Name | Value |
| User e-mail address | artem-tok@yandex.ru |
| Use homological fragments only | Yes |
| Scale | Random |
| Algorithm | Both Cluster and Topological |
| Start position | 1 |
| End position | 10000 |
| Gap penalty (in SD units) | 1 |
| Throw off columns with N | |
| Output Tree Type | PHYLIP |
| Picture width | 640 |
| Picture height | 480 |
| Max/min factor (cluster) | 8 |
| Max/min factor (topological) | 8 |
| Bootstrap Enable | No |
Alignment
ECOLI MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA SALTY MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA VIBFM MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIA RALPJ MARITVEDCLKQIPNRFELALAATYRARQLVQG-HTPKVD-AKDKPTVTA PSEAE MARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVA RHOS4 MARVTVEDCVDKVPNRFELVMLAAHRAREIASG-SSLTIDRDNDKNPVVA BRAJA MARVTVEDCIDKVDNRFDLVLLAAHRARMISSG-SQLTVDRDNDKNPVVS RHIEC MARVTVEDCIDKVENRFELVLLASHRARLISQG-ASITIDRDNDKNPVVA ECOLI LREIEEGLINNQIL---DVRERQEQQEQEAAELQAVTAIAEGRR------ SALTY LREIEEGLINNQIL---DVRERQEQQEQEAAELQAVTAIAEGRR------ VIBFM LREIEEGLITKELL---DARERQEQQEQDAAELAAVSSITHNR------- RALPJ LREIASGQVGIEML-------------------KKVPS------------ PSEAE LREIASGLVDENVVQQEDIVEDEPLFAAFDDEANTEAL------------ RHOS4 LREIAEETQSAESLRERMIESHQTQIEVDEPEEDQMALLMGSEVDRPVQD BRAJA LREIADTTISPEDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADD RHIEC LREIADETLSPDDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGAAAADSE ECOLI ------------------------------------- SALTY ------------------------------------- VIBFM ------------------------------------- RALPJ ------------------------------------- PSEAE ------------------------------------- RHOS4 D------------MSEEKLLRALMEAQGQN------- BRAJA T------EVAVERMTEEELLKGLEGLAPPEEQPEEDE RHIEC EQDDLPETITFDQMSEEELLAGIEGLVPPEKSDDY--
PHYLOGENETIC TREE
0.832361 ____________________________________________________________________ ECOLI | | | | |_____ SALTY | | | |________________ VIBFM | | |________________________________________________ PSEAE | |________________________________________________________ RALPJ |____________________________________________________________________ RHOS4 |__________________________________________ BRAJA |_____________________________ RHIEC * The phylogenetic tree in Phylip format (((((ECOLI:0.062984,SALTY:0.062984):0.142230,VIBFM:0.205215):0.374933,PSEAE:0.580147):0.097568,RALPJ:0.677715):0.154646,(RHOS4:0.504276,(BRAJA:0.344619,RHIEC:0.344619):0.159657):0.328085); CLUSTER ALGORITHM
_________________________________________ RALPJ | | | |____________________ PSEAE | | |________________________ RHIEC | | | |_________________________ BRAJA | | |________________________ RHOS4 | | VIBFM | SALTY | ECOLI * The phylogenetic tree in Phylip format (((((RALPJ:0.293693,PSEAE:0.283411):0.029932,((RHIEC:0.001000,BRAJA:0.371344):0.113388,RHOS4:0.351199):0.231854):0.198021,VIBFM:0.001000):0.067893,SALTY:0.001000):0.000500,ECOLI:0.000500); TOPOLOGICAL ALGORITHM
Distance Matrix
1 2 3 4 5 6 7 8 1 ECOLI 0.000 0.063 0.205 0.716 0.573 0.753 0.803 0.825 2 SALTY 0.063 0.000 0.205 0.716 0.573 0.753 0.803 0.825 3 VIBFM 0.205 0.205 0.000 0.722 0.587 0.749 0.811 0.832 4 RALPJ 0.716 0.716 0.722 0.000 0.637 0.848 0.905 0.925 5 PSEAE 0.573 0.573 0.587 0.637 0.000 0.745 0.802 0.837 6 RHOS4 0.753 0.753 0.749 0.848 0.745 0.000 0.487 0.521 7 BRAJA 0.803 0.803 0.811 0.905 0.802 0.487 0.000 0.345 8 RHIEC 0.825 0.825 0.832 0.925 0.837 0.521 0.345 0.000
Graphical Phylogenetic Tree
| Parameters | Alignment | Textual Phylogenetic Tree | Distance Matrix | Graphical Phylogenetic Tree |