BLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AE012093 AE008922 Xanthomonas campestris pv. campestris str.
ATCC 33913,  section 1 of 460 of the complete genome.  
         (32 letters)

Database: xcg 
           1 sequences; 5,076,188 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008922 AE008922.1 Xanthomonas campestris pv. campestris str. A...    64   5e-12

>AE008922 AE008922.1 Xanthomonas campestris pv. campestris str. ATCC 33913,
               complete genome.
          Length = 5076188

 Score = 63.9 bits (32), Expect = 5e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                               
Query: 1       ggtcgcaggttcgaatcctgtctccccgacca 32
               ||||||||||||||||||||||||||||||||
Sbjct: 2632862 ggtcgcaggttcgaatcctgtctccccgacca 2632893



 Score = 32.2 bits (16), Expect = 0.019
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 1       ggtcgcaggttcgaatcctg 20
               |||||||||||| |||||||
Sbjct: 2988140 ggtcgcaggttcaaatcctg 2988121



 Score = 30.2 bits (15), Expect = 0.077
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 6       caggttcgaatcctg 20
               |||||||||||||||
Sbjct: 4438168 caggttcgaatcctg 4438154



 Score = 30.2 bits (15), Expect = 0.077
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 6       caggttcgaatcctg 20
               |||||||||||||||
Sbjct: 4441181 caggttcgaatcctg 4441167



 Score = 26.3 bits (13), Expect = 1.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 1      ggtcgcaggttcg 13
              |||||||||||||
Sbjct: 514478 ggtcgcaggttcg 514490



 Score = 26.3 bits (13), Expect = 1.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 7       aggttcgaatcct 19
               |||||||||||||
Sbjct: 1032392 aggttcgaatcct 1032404



 Score = 26.3 bits (13), Expect = 1.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 7       aggttcgaatcct 19
               |||||||||||||
Sbjct: 1128370 aggttcgaatcct 1128382



 Score = 26.3 bits (13), Expect = 1.2
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 2       gtcgcaggttcgaatcc 18
               ||||| |||||||||||
Sbjct: 4611493 gtcgcgggttcgaatcc 4611509



 Score = 26.3 bits (13), Expect = 1.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 4       cgcaggttcgaat 16
               |||||||||||||
Sbjct: 4885006 cgcaggttcgaat 4884994



 Score = 24.3 bits (12), Expect = 4.7
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                          
Query: 3      tcgcaggttcga 14
              ||||||||||||
Sbjct: 728052 tcgcaggttcga 728063



 Score = 24.3 bits (12), Expect = 4.7
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                           
Query: 4       cgcaggttcgaa 15
               ||||||||||||
Sbjct: 3065221 cgcaggttcgaa 3065210


  Database: xcg
    Posted date:  Nov 19, 2009  1:53 AM
  Number of letters in database: 5,076,188
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Number of Hits to DB: 819
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 32
Length of database: 5,076,188
Length adjustment: 13
Effective length of query: 19
Effective length of database: 5,076,175
Effective search space: 96447325
Effective search space used: 96447325
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)