RID: A04FJWXJ016 Job Title:PLPRO_CVBEN P0C6W7 Papain-like proteinase Program: BLASTP Query: PLPRO_CVBEN P0C6W7 Papain-like proteinase ID: lcl|Query_7352(amino acid) Length: 1899 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 2960 2960 100% 0.0 100.00 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 2960 2960 100% 0.0 100.00 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 2955 2955 100% 0.0 99.74 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 2955 2955 100% 0.0 99.74 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 2939 2939 100% 0.0 99.10 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 2938 2938 100% 0.0 99.10 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 2928 2928 100% 0.0 98.79 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 2927 2927 100% 0.0 98.79 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 2867 2867 100% 0.0 96.16 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 2867 2867 100% 0.0 96.16 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 2024 2024 100% 0.0 61.77 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 2023 2023 100% 0.0 61.50 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 2017 2017 100% 0.0 60.11 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 2015 2015 100% 0.0 60.11 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 1963 1963 100% 0.0 59.17 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 1963 1963 100% 0.0 59.17 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 1885 2006 100% 0.0 61.60 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 1885 2006 100% 0.0 61.38 4421 P0C6U5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 1884 2005 100% 0.0 61.60 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 1884 2005 100% 0.0 61.44 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 1882 2003 100% 0.0 61.38 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 1881 2002 100% 0.0 61.44 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS cor... NA 442736 406 532 76% 1e-119 29.02 4376 P0C6F8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 406 531 76% 2e-119 29.02 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 2697049 400 518 75% 2e-117 28.81 4405 P0DTC1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 399 518 75% 4e-117 28.70 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 397 523 75% 1e-116 29.00 4388 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 397 523 75% 2e-116 29.00 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 362 452 76% 2e-104 27.15 4391 K9N638.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 362 452 78% 2e-104 27.15 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 333 396 69% 1e-94 28.01 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Rousettus ba... NA 694006 333 396 69% 1e-94 28.01 4248 P0C6T6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 292 413 39% 1e-80 36.70 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 694009 291 412 39% 1e-80 36.70 4382 P0C6U8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 287 409 39% 4e-79 37.14 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS CoV... NA 349344 287 409 39% 5e-79 37.14 4380 P0C6T7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 240 317 34% 1e-63 32.43 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 240 319 34% 1e-63 32.43 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 239 316 34% 2e-63 32.43 4441 P0C6F7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 239 318 34% 2e-63 32.43 4434 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 239 320 34% 4e-63 31.77 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 238 319 34% 6e-63 31.77 4481 P0C6T5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11143 143 143 10% 4e-37 41.15 500 P26627.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 123 170 33% 1e-26 27.09 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 11137 122 170 33% 1e-26 27.09 4085 P0C6U2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 277944 109 152 32% 1e-22 27.09 4060 P0C6U6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 109 152 32% 1e-22 27.09 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 97.5 144 38% 8e-19 23.81 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 97.5 145 37% 8e-19 23.96 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 97.3 144 38% 8e-19 23.81 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11122 97.0 145 38% 1e-18 23.81 3951 P0C6V3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11127 96.8 145 37% 1e-18 23.96 3953 P0C6V5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 92.3 138 33% 3e-17 25.29 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine tran... NA 11151 91.8 192 40% 4e-17 26.25 4017 P0C6V2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Scotophilus ... NA 693999 91.8 138 33% 4e-17 25.54 4128 P0C6F6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 91.8 192 40% 4e-17 26.25 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 89.9 138 32% 1e-16 25.00 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 89.7 137 32% 2e-16 25.60 4117 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 81.5 138 32% 6e-14 27.08 6709 Q98VG9.2 RecName: Full=Uncharacterized protein TM_0508 [Thermotoga... Thermotoga m... NA 243274 52.6 52.6 6% 1e-05 35.07 599 Q9WYX8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase 1; AltName:... Pantoea vaga... NA 712898 43.2 43.2 8% 8e-04 31.25 171 E1SDF1.1 RecName: Full=Macro domain-containing protein LA_4133... Leptospira i... NA 189518 43.2 43.2 6% 8e-04 28.89 175 Q8EYT0.1 RecName: Full=Macro domain-containing protein LIC_13295... Leptospira i... NA 267671 43.2 43.2 6% 0.001 28.89 175 Q72M93.1 RecName: Full=Protein mono-ADP-ribosyltransferase PARP14;... Mus musculus house mouse 10090 47.4 47.4 6% 0.001 28.79 1817 Q2EMV9.3 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Citrobacter ... NA 637910 42.1 42.1 8% 0.002 23.90 177 D2TT52.2 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Cronobacter ... NA 693216 42.1 42.1 7% 0.002 28.85 176 C9Y0V8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Salmonella e... NA 99287 41.9 41.9 5% 0.003 31.03 179 P67341.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Salmonella e... NA 423368 41.9 41.9 5% 0.003 31.03 179 B4T2X8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Escherichia ... NA 585054 41.6 41.6 5% 0.003 28.33 177 B7LT90.2 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Enterobacter... NA 716541 41.6 41.6 7% 0.003 27.15 180 D5CE05.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Salmonella e... NA 550538 41.6 41.6 5% 0.004 31.03 179 B5RBF3.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Cronobacter ... NA 290339 41.6 41.6 7% 0.004 28.39 180 A7MG20.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Salmonella e... NA 454166 40.0 40.0 5% 0.012 31.03 179 B5F961.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Shigella fle... NA 373384 39.8 39.8 6% 0.015 30.66 177 Q0T5Z6.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Escherichia ... NA 83333 39.8 39.8 6% 0.017 29.93 177 P0A8D6.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... Shigella dys... NA 300267 38.7 38.7 6% 0.037 29.20 177 Q32E73.1 RecName: Full=Macro domain-containing protein TTE0995... Caldanaeroba... NA 273068 38.5 38.5 8% 0.043 26.74 175 Q8RB30.1 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 852 to 2750 Score:2960 bits(11254), Expect:0.0, Method:Compositional matrix adjust., Identities:1899/1899(100%), Positives:1899/1899(100%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC Sbjct 1872 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 852 to 2750 Score:2960 bits(11253), Expect:0.0, Method:Compositional matrix adjust., Identities:1899/1899(100%), Positives:1899/1899(100%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC Sbjct 1872 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 852 to 2750 Score:2955 bits(11237), Expect:0.0, Method:Compositional matrix adjust., Identities:1894/1899(99%), Positives:1897/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVV+D Sbjct 852 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVD 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGE+FGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTAN LSMAVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSKPGCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 852 to 2750 Score:2955 bits(11236), Expect:0.0, Method:Compositional matrix adjust., Identities:1894/1899(99%), Positives:1897/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVV+D Sbjct 852 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVD 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGE+FGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTAN LSMAVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSKPGCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 852 to 2750 Score:2939 bits(11173), Expect:0.0, Method:Compositional matrix adjust., Identities:1882/1899(99%), Positives:1892/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR VTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLA+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDV+M Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF DLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFVDLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR VVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYD MANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFY+RDGQRTYDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 852 to 2750 Score:2938 bits(11169), Expect:0.0, Method:Compositional matrix adjust., Identities:1882/1899(99%), Positives:1892/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR VTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLA+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDV+M Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF DLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFVDLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR VVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYD MANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFY+RDGQRTYDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 852 to 2750 Score:2928 bits(11134), Expect:0.0, Method:Compositional matrix adjust., Identities:1876/1899(99%), Positives:1888/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR VTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACG FEVDDTVDMEEFYAVVID Sbjct 852 GRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLA+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDV+M Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF+DLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFGDLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHG SFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGTSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVR VKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRPVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR VVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKI QWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIVQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPEL+MLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFY+RDGQRTYDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDK LITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKL LTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 852 to 2750 Score:2927 bits(11128), Expect:0.0, Method:Compositional matrix adjust., Identities:1876/1899(99%), Positives:1888/1899(99%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR VTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACG FEVDDTVDMEEFYAVVID Sbjct 852 GRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLA+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDV+M Sbjct 972 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF+DLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFGDLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHG SFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGTSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV Sbjct 1452 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVR VKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRPVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ Sbjct 1932 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR VVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA Sbjct 2112 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKI QWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIVQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPEL+MLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 SVRLLVSLANMLPAHVFMRFYIIIASFIKLF LFRHVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGCYMRLFY+RDGQRTYDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDK LITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD Sbjct 2652 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKL LTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 852 to 2750 Score:2867 bits(10899), Expect:0.0, Method:Compositional matrix adjust., Identities:1826/1899(96%), Positives:1868/1899(98%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTV+EI S PK IKVFYELD+DFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDN+LFLFDEAGEEV+A+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ES+VEEDDVEGEETDLT+TSAG+PCVASEQEESSE+LEDTLDDGP VETSDSQVEEDVEM Sbjct 972 ESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF DLESVIQDYENVCFEFYTTEPEFVKVL+LYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFVDLESVIQDYENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIV+PQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVLPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSH+CKCGESMVLIDVDVPFTAHFALKDKLFCAFITKR Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHICKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRI 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSK VKAEVVVNPANGHM HGGGVAKAIAVAAGQQFVKETT+MVK Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSY LLERVYKH+N+YDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLA RLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLIL NDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV+PEGWRVV Sbjct 1452 SIVYETDANKLILINDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVLPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFEC GGIDICSQDKVFGYVQQG FNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECTGGIDICSQDKVFGYVQQGIFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNC KWQVV NGKYFTFKQANNNCFVNVSCLMLQSL+L FKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFV+LVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTG+DAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIF GD+VGHYVHVKCEQSYQLYDASNVKKVTDVTG+LSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFIGDNVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 D LN+KLGFDSSKEFVEYK+TEWPTATGDVVLA DDLYVKRYERGCITFGKPVIWLSHE+ Sbjct 1932 DSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEK 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVD+NKFDVLKVDDVDD+GD SES+AKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSE KYVKSLSIVDVYDMWLTGC+YVVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKP NVVKAVRNK SACFNFIKWLFVLLFGWIKISADNKVIYTTE+A Sbjct 2112 VSIPIDLLNLREIKPAVNVVKAVRNKTSACFNFIKWLFVLLFGWIKISADNKVIYTTEIA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWS+VARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 S RLLV+LANMLPAHVFMRFYIIIASFIKLF LF+HVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGC MRLFY+RDGQR YDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQI KVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLK+DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQ+SSD Sbjct 2652 LTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 852 to 2750 Score:2867 bits(10899), Expect:0.0, Method:Compositional matrix adjust., Identities:1826/1899(96%), Positives:1868/1899(98%), Gaps:0/1899(0%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GRRVTFKEQPTV+EI S PK IKVFYELD+DFNTILNTACGVFEVDDTVDMEEFYAVVID Sbjct 852 GRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVID 911 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIEEKLSPCKELEGVGAKVSAFLQKLEDN+LFLFDEAGEEV+A+KLYCAFTAPEDDDFLE Sbjct 912 AIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLE 971 Query 121 ESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEM 180 ES+VEEDDVEGEETDLT+TSAG+PCVASEQEESSE+LEDTLDDGP VETSDSQVEEDVEM Sbjct 972 ESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEM 1031 Query 181 SDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFK 240 SDF DLESVIQDYENVCFEFYTTEPEFVKVL+LYVPKATRNNCWLRSVLAVMQKLPCQFK Sbjct 1032 SDFVDLESVIQDYENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFK 1091 Query 241 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKC 300 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIV+PQGGYVADFAYWFLTLCDWQCVAYWKC Sbjct 1092 DKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVLPQGGYVADFAYWFLTLCDWQCVAYWKC 1151 Query 301 IKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRS 360 IKCDLALKLKGLDAMFFYGDVVSH+CKCGESMVLIDVDVPFTAHFALKDKLFCAFITKR Sbjct 1152 IKCDLALKLKGLDAMFFYGDVVSHICKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRI 1211 Query 361 VYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 420 VYKAACVVDVNDSHSMAVVDGKQIDDHR+TSITSDKFDFIIGHGMSFSMTTFEIAQLYGS Sbjct 1212 VYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGS 1271 Query 421 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 480 CITPNVCFVKGDIIKVSK VKAEVVVNPANGHM HGGGVAKAIAVAAGQQFVKETT+MVK Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 481 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 540 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSY LLERVYKH+N+YDCVVTTLIS Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 541 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 600 AGIFSVPSDVSLTYLLGTA KQVVLVSNNQEDFDLISKCQITAVEGTKKLA RLSFNVGR Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 601 SIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVV 660 SIVYETDANKLIL NDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV+PEGWRVV Sbjct 1452 SIVYETDANKLILINDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVLPEGWRVV 1511 Query 661 NKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTV 720 NKFYQINGVRTVKYFEC GGIDICSQDKVFGYVQQG FNKATVAQIKALFLDKVDILLTV Sbjct 1512 NKFYQINGVRTVKYFECTGGIDICSQDKVFGYVQQGIFNKATVAQIKALFLDKVDILLTV 1571 Query 721 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 780 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS Sbjct 1572 DGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRS 1631 Query 781 SFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQ 840 SFNFDQKELLAYYNMLVNC KWQVV NGKYFTFKQANNNCFVNVSCLMLQSL+L FKIVQ Sbjct 1632 SFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQ 1691 Query 841 WQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 900 WQEAWLEFRSGRPARFV+LVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC Sbjct 1692 WQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKC 1751 Query 901 GVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 960 GVKQEQRTG+DAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL Sbjct 1752 GVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKL 1811 Query 961 PKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKS 1020 PKGVGSANIF GD+VGHYVHVKCEQSYQLYDASNVKKVTDVTG+LSDCLYLKNLKQTFKS Sbjct 1812 PKGVGSANIFIGDNVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKS 1871 Query 1021 VLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTIC 1080 VLTTYYLDDVKKIEY+PDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT+C Sbjct 1872 VLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVC 1931 Query 1081 DILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQ 1140 D LN+KLGFDSSKEFVEYK+TEWPTATGDVVLA DDLYVKRYERGCITFGKPVIWLSHE+ Sbjct 1932 DSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEK 1991 Query 1141 ASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVE 1200 ASLNSLTYFNRPLLVD+NKFDVLKVDDVDD+GD SES+AKE+KEINIIKLSGVKKPFKVE Sbjct 1992 ASLNSLTYFNRPLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEINIIKLSGVKKPFKVE 2051 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSVIVNDDTSE KYVKSLSIVDVYDMWLTGC+YVVRTANALS AVNVPTIRKFIKFGMTL Sbjct 2052 DSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTL 2111 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 VSIPIDLLNLREIKP NVVKAVRNK SACFNFIKWLFVLLFGWIKISADNKVIYTTE+A Sbjct 2112 VSIPIDLLNLREIKPAVNVVKAVRNKTSACFNFIKWLFVLLFGWIKISADNKVIYTTEIA 2171 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLTCKLVALAFKNAFLTFKWS+VARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP Sbjct 2172 SKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 2231 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVGKIAQWIK+TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV Sbjct 2232 TFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 2291 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW Sbjct 2292 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 2351 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 S RLLV+LANMLPAHVFMRFYIIIASFIKLF LF+HVAYGCSK+GCLFCYKRNRSLRVKC Sbjct 2352 SFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKC 2411 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP Sbjct 2412 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 2471 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TDVAYHTVTDVKQVGC MRLFY+RDGQR YDDVNASLFVDYSNLLHSKVK+VPNMHVVVV Sbjct 2472 TDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVV 2531 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD Sbjct 2532 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 2591 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 KKSLNALIATAHSSIKQGTQI KVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE Sbjct 2592 KKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 2651 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 LTDESCNNLVPTYLK+DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQ+SSD Sbjct 2652 LTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSD 2711 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG Sbjct 2712 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 833 to 2783 Score:2024 bits(7690), Expect:0.0, Method:Compositional matrix adjust., Identities:1210/1959(62%), Positives:1579/1959(80%), Gaps:68/1959(3%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V+EI+ST K IK+ + LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVEFNDKPKVKEIPSTRK-IKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 A+E LSPCKE + +G+KV A+L++L ++ ++LFDE+GEEV+A+K+YC+F+AP+D+D + Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDEDCVA 951 Query 121 ESGVEEDDVEGEETD----LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEE 176 V+ D+ +G+++D L + E VA Q +E + LD+ VE+ D + E Sbjct 952 ADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAES-DARLDQ---VEAFDIEKVE 1007 Query 177 DVEMSDF-ADLESVIQD-YENV-CFE---------FYTT---EPEFVKVLDLYVPKATRN 221 D ++++ A+L++ + YE+V F+ FY+ E +F KV ++Y P R Sbjct 1008 DPILNELSAELNAPADKTYEDVLAFDAIYSEALSAFYAVPGDETHF-KVCGFYSPAIERT 1066 Query 222 NCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVAD 281 NCWLRS L VMQ LP +FKD ++Q LW+ YK Y++ FVD LV+ +P +I++PQGGYVAD Sbjct 1067 NCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVAD 1126 Query 282 FAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPF 341 FAY FL+ C + A W+C+KCD+ LKL+GLDAMFFYGDVVSHVCKCG +M L+ D+P+ Sbjct 1127 FAYFFLSQCSFKAYANWRCLKCDMDLKLQGLDAMFFYGDVVSHVCKCGTGMTLLSADIPY 1186 Query 342 TAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFII 401 T HF+L+D FCAF T R V++AACVVDVND HSMAVVDGKQID+ VT + +DK+DF++ Sbjct 1187 TLHFGLRDDKFCAFYTPRKVFRAACVVDVNDCHSMAVVDGKQIDGKVVTKFNGDKYDFMV 1246 Query 402 GHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAK 461 GHGM+FSM++FEIAQLYGSCITPNVCFVKGD+IKV +RV AEV+VNPANG+MAHG+GVA Sbjct 1247 GHGMAFSMSAFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAG 1306 Query 462 AIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALL 521 AIA AAG+ F+KET+DMVK++GVC G+CY STGG+LCKTVLN+VGPDAR +GKQ Y++L Sbjct 1307 AIAKAAGKSFIKETADMVKNQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFL 1366 Query 522 ERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQI 581 ER Y+H+NK D VVTTLISAGIFSVP+DVSLTYL+G K+V+LVSNN++DFD+I KCQ+ Sbjct 1367 ERAYQHINKCDDVVTTLISAGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQV 1426 Query 582 TAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDD 641 T++ GTK L+ +L+ N+ R + +ET+A ++S+ FVS+++VLQ+V LRHDI LDDD Sbjct 1427 TSIAGTKALSLQLAKNLCRDVKFETNACDSLFSDS-CFVSSYDVLQEVELLRHDIQLDDD 1485 Query 642 ARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKA 701 AR FVQ+++D +P +WR+VNKF ++GVRTVKYFECPG I + SQ+K FGYVQ+GSF+ A Sbjct 1486 ARVFVQAHMDNLPADWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVA 1545 Query 702 TVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKG 761 +V+QI+AL+ +KVD+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C KG Sbjct 1546 SVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKG 1605 Query 762 KVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCF 821 KVFFQ+ LS+ DL AV +F FD+ +LL YYNML C KW VV G+YF+FKQ+NNNC+ Sbjct 1606 KVFFQYSGLSAADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCY 1664 Query 822 VNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVV 881 +NV+CLMLQ L+LKF QWQEAW EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RVV Sbjct 1665 INVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVV 1724 Query 882 FSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC 941 + + DL+GA CDFE+ CKCGVKQEQR GVDAVMHFGTL + DL GYT+ C+CG+KL+HC Sbjct 1725 LREADLSGATCDFEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLVHC 1784 Query 942 VRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDV 1001 +++VPFLICSN P + KLP +V +ANIF G+ +GHY HVKC YQLYDA NV KV++ Sbjct 1785 TQLNVPFLICSNKPEGKKLPDDVVAANIFTGGSLGHYTHVKCKPKYQLYDACNVSKVSEA 1844 Query 1002 TGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKT 1061 GN++DCLYLKNLKQTF S LTT+YLDDVK +EYNPDLSQYYC++GKYYT+ IIKAQF+T Sbjct 1845 KGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRT 1904 Query 1062 FEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKR 1121 FEKV+GVYTNFKL+GH+I + +NAKLGFD + F EYK+TEWPTATGDVVLA+DDLYV R Sbjct 1905 FEKVEGVYTNFKLVGHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSR 1964 Query 1122 YERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVD------------ 1169 Y GC+TFGKPVIWL+HE+ASL+SLTYFNRP +V ENKF+VL VD + Sbjct 1965 YSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVL 2024 Query 1170 -----DGGDISESDAKESK------------------------EINIIKLSGVKKPFKVE 1200 G+ + + AKE K +++ +KL+GVKKP+KVE Sbjct 2025 VTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVE 2084 Query 1201 DSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTL 1260 DSV+VND TSE K VKSLSIVDVYDM LTGCRYVV+ AN LS VN PT+R ++K GMT Sbjct 2085 DSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREYVKWGMTK 2144 Query 1261 VSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVA 1320 + IP L+ LR+ K F K V+ K+ AC++ +KW+F+ F+WIK+++DNKVIYTTEVA Sbjct 2145 IVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIKFNTDNKVIYTTEVA 2204 Query 1321 SKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLP 1380 SKLT +L LAFKNA+ TF+W+VV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IGF+P Sbjct 2205 SKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGFFP 2264 Query 1381 TFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVV 1440 TFVG+I W+K+TF++ T+CDLY + DVG+++ +CNGS+ C++C++GFDMLDNY AI+VV Sbjct 2265 TFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSSFCNGSMVCELCFSGFDMLDNYDAINVV 2324 Query 1441 QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHW 1500 Q DRR DY +++K+V+EL+++Y+LYT FYPLF+LI++Q+LTTWLPE+FML T+HW Sbjct 2325 QHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHW 2384 Query 1501 SVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKC 1560 S R++V +ANMLPA ++RFYI++++ K+F L RHV YGCS+PGCLFCYKRNRS+RVKC Sbjct 2385 SARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKC 2444 Query 1561 STIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQP 1620 ST+VGG +RYYDVMANGGTGFC+KHQWNC++C ++ PGNTFIT EAA DLSKELKRP++P Sbjct 2445 STVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNP 2504 Query 1621 TDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVV 1680 TD AY VT+VKQVGC MRLFYERDGQR YDDV+ASLFVD + LLHSKVKGVP+ HVVVV Sbjct 2505 TDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVV 2564 Query 1681 ENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 EN+ADKA FLNAAVFYAQSL+RP+L+V+K+LITTANTG SV++TMFD+YVD++L+++DVD Sbjct 2565 ENEADKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVD 2624 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 +KSL +++ +AH+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ S+MSAV+AG++ Sbjct 2625 RKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVD 2684 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 +TDESCNNLVPTY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D Sbjct 2685 FTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSAD 2744 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 +QH+L+KAC KTGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2745 LQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2783 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 833 to 2783 Score:2023 bits(7685), Expect:0.0, Method:Compositional matrix adjust., Identities:1203/1956(62%), Positives:1572/1956(80%), Gaps:62/1956(3%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V+EI+ST K IK+ + LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVEFNDKPKVKEIPSTRK-IKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 A+E LSPCKE + +G+KV A+L++L ++ ++LFDE+GEEV+A+K+YC+F+AP+D+D + Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDEDCVA 951 Query 121 ESGVEEDDVEGEETD----LTVTSAGEPCVASEQ---EESSEILEDTLD------DGPCV 167 V+ D+ +G+++D L + E VA Q ES L++ ++P + Sbjct 952 ADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAESDARLDQVEAFDIEKVEDPIL 1011 Query 168 ETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTT---EPEFVKVLDLYVPKATRNNCW 224 + ++++ + + + D+ + Y + FY+ E +F KV ++Y P R NCW Sbjct 1012 NELSAELNAPADKT-YEDVLAFDAIYSEALSAFYAVPGDETHF-KVCGFYSPAIERTNCW 1069 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRS L VMQ LP +FKD ++Q LW+ YK Y++ FVD LV+ +P +I++PQGGYVADFAY Sbjct 1070 LRSTLIVMQSLPLEFKDLEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVADFAY 1129 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 FL+ C + A W+C+KCD+ LKL+GLDAMFFYGDVVSHVCKCG +M L+ D+P+T H Sbjct 1130 FFLSQCSFKAYANWRCLKCDMDLKLQGLDAMFFYGDVVSHVCKCGTGMTLLSADIPYTLH 1189 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L+D FCAF T R V++AACVVDVND HSMAVVDGKQID+ VT + +DK+DF++GHG Sbjct 1190 FGLRDDKFCAFYTPRKVFRAACVVDVNDCHSMAVVDGKQIDGKVVTKFNGDKYDFMVGHG 1249 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 M+FSM++FEIAQLYGSCITPNVCFVKGD+IKV +RV AEV+VNPANG+MAHG+GVA AIA Sbjct 1250 MAFSMSAFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIA 1309 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 AAG+ F+KET+DMVK++GVC G+CY STGG+LCKTVLN+VGPDAR +GKQ Y++LER Sbjct 1310 KAAGKSFIKETADMVKNQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERA 1369 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 Y+H+NK D VVTTLISAGIFSVP+DVSLTYL+G K+V+LVSNN++DFD+I KCQ+T++ Sbjct 1370 YQHINKCDDVVTTLISAGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQVTSI 1429 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK L+ +L+ N+ R + +ET+A ++S D FVS+++VLQ+V LRHDI LDDDAR Sbjct 1430 AGTKALSLQLAKNLCRDVKFETNACDSLFS-DSCFVSSYDVLQEVELLRHDIQLDDDARV 1488 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 FVQ+++D +P +WR+VNKF ++GVRTVKYFECPG I + SQ+K FGYVQ+GSF+ A+V+ Sbjct 1489 FVQAHMDNLPADWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVS 1548 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 QI+AL+ +KVD+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C KGKVF Sbjct 1549 QIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVF 1608 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 FQ+ LS+ DL AV +F FD+ +LL YYNML C KW VV G+YF+FKQ+NNNC++NV Sbjct 1609 FQYSGLSAADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINV 1667 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ L+LKF QWQEAW EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RVV+ + Sbjct 1668 ACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLRE 1727 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GA CDFE+ CKCGVKQEQR GVDAVMHFGTL + DL GYT+ C+CG+KL+HC ++ Sbjct 1728 ADLSGATCDFEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLVHCTQL 1787 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSN P + KLP +V +ANIF G+ +GHY HVKC YQLYDA NV KV++ GN Sbjct 1788 NVPFLICSNKPEGKKLPDDVVAANIFTGGSLGHYTHVKCKPKYQLYDACNVSKVSEAKGN 1847 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 ++DCLYLKNLKQTF S LTT+YLDDVK +EYNPDLSQYYC++GKYYT+ IIKAQF+TFEK Sbjct 1848 FTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRTFEK 1907 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 V+GVYTNFKL+GH+I + +NAKLGFD + F EYK+TEWPTATGDVVLA+DDLYV RY Sbjct 1908 VEGVYTNFKLVGHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSG 1967 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVD--------------- 1169 GC+TFGKPVIWL+HE+ASL+SLTYFNRP +V ENKF+VL VD + Sbjct 1968 GCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG 2027 Query 1170 --DGGDISESDAKESK------------------------EINIIKLSGVKKPFKVEDSV 1203 G+ + + AKE K +++ +KL+GVKKP+KVEDSV Sbjct 2028 ALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDSV 2087 Query 1204 IVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSI 1263 +VND TSE K VKSLSIVDVYDM LTGCRYVV+ AN LS VN PT+R ++K GMT + I Sbjct 2088 VVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREYVKWGMTKIVI 2147 Query 1264 PIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKL 1323 P L+ LR+ K F K V+ K+ AC++ +KW+F+ F+WIK+++DNKVIYTTEVASKL Sbjct 2148 PAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIKFNTDNKVIYTTEVASKL 2207 Query 1324 TCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFV 1383 T +L LAFKNA+ TF+W+VV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IGF+PTFV Sbjct 2208 TFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGFFPTFV 2267 Query 1384 GKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYE 1443 G+I W+K+TF++ T+CDLY + DVG+++ +CNGS+ C++C++GFDMLDNY AI+VVQ Sbjct 2268 GQIVAWVKTTFGIFTLCDLYQVSDVGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHV 2327 Query 1444 ADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVR 1503 DRR DY +++K+V+EL+++Y+LYT FYPLF+LI++Q+LTTWLPE+FML T+HWS R Sbjct 2328 VDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSAR 2387 Query 1504 LLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 ++V +ANMLPA ++RFYI++++ K+F L RHV YGCS+PGCLFCYKRNRS+RVKCST+ Sbjct 2388 FFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTV 2447 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 VGG +RYYDVMANGGTGFC+KHQWNC++C ++ PGNTFIT EAA DLSKELKRP++PTD Sbjct 2448 VGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDS 2507 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVEND 1683 AY VT+VKQVGC MRLFYERDGQR YDDV+ASLFVD + LLHSKVKGVP+ HVVVVEN+ Sbjct 2508 AYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENE 2567 Query 1684 ADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKS 1743 ADKA FLNAAVFYAQSL+RP+L+V+K+LITTANTG SV++TMFD+YVD++L+++DVD+KS Sbjct 2568 ADKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKS 2627 Query 1744 LNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTD 1803 L +++ +AH+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ S+MSAV+AG+++TD Sbjct 2628 LTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTD 2687 Query 1804 ESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQH 1863 ESCNNLVPTY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D+QH Sbjct 2688 ESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQH 2747 Query 1864 KLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 +L+KAC KTGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2748 RLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2783 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 833 to 2837 Score:2017 bits(7663), Expect:0.0, Method:Compositional matrix adjust., Identities:1207/2008(60%), Positives:1572/2008(78%), Gaps:112/2008(5%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V I+ST K IK+ + LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVEFNDKPKVRKIPSTRK-IKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 A+E LSPCKE + +G+KV A+L++L ++ ++LFDE+G+EV+A+++YC+F+AP+D+D + Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVA 951 Query 121 ESGVEEDDVEGEETDLT-----------------VTSAGEPCVAS--------------- 148 V+ D+ ++++++ + V + +E CVA Sbjct 952 ADVVDADENQDDDAEDSAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEELAEPDAVGS 1011 Query 149 ----EQEESSEILEDTLDDG-------PCVETSDS---QVE----EDVEMSDFADLESVI 190 E +E+ E + +G C ++ D+ QVE E VE S + +L++ + Sbjct 1012 QTPIASAEETEVGEASDREGIAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTEL 1071 Query 191 QD-----------YENVCFE----FYTTEPE--FVKVLDLYVPKATRNNCWLRSVLAVMQ 233 + ++ VC E FY+ ++ KV ++Y P R NCWLRS L VMQ Sbjct 1072 NAPADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ 1131 Query 234 KLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQ 293 LP +FKD ++Q LW+ YK Y Q FVD LV+ +P +I++PQGGYVADFAY FL+ C + Sbjct 1132 SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFAYFFLSQCSFK 1191 Query 294 CVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFC 353 A W+C+ CD+ LKL+GLDAMFFYGDVVSH+CKCG+SM L+ D+P+T HF+++D FC Sbjct 1192 AYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC 1251 Query 354 AFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFE 413 AF T R V++AAC VDVND HSMAVV+GKQID+ VT + +DKFDF++G GM+FSM+ FE Sbjct 1252 AFYTPRKVFRAACAVDVNDCHSMAVVEGKQIDGKVVTKFIGDKFDFMVGYGMTFSMSPFE 1311 Query 414 IAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVK 473 +AQLYGSCITPNVCFVKGD+IKV + V+AEV+VNPANG+MAHG+GVA AIA AG F+K Sbjct 1312 LAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIK 1371 Query 474 ETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDC 533 ET+DMVK++GVC G+CY S+GGKLCK VLN+VGPDAR +GKQ Y+LLER Y+H+NK D Sbjct 1372 ETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN 1431 Query 534 VVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAER 593 VVTTLISAGIFSVP+DVSLTYLLG K+V+LVSNNQ+DFD+I KCQ+T+V GTK L+ + Sbjct 1432 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQ 1491 Query 594 LSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVV 653 L+ N+ R + + T+A ++S + FVS+++VLQ+V +LRHDI LDDDAR FVQ+N+D + Sbjct 1492 LAKNLCRDVKFVTNACSSLFS-ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCL 1550 Query 654 PEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDK 713 P +WR+VNKF ++GVRT+KYFECPGGI + SQ+K FGYVQ+GSF+ A+V+QI+AL+ +K Sbjct 1551 PTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANK 1610 Query 714 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 773 VD+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C YKGKVFFQ+ +LS Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 774 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 833 DL AV+ +F FD+ +LL YY ML C KW VV G+YF+FKQ+NNNC++NV+CLMLQ L+ Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 834 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 893 LKF QWQEAW EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RVV+ + DL+GA C+ Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 894 FEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSN 953 +E+ CKCGVKQEQR GVDAVMHFGTL + DL GY + C+CG KL+HC +F+VPFLICSN Sbjct 1790 LEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPFLICSN 1849 Query 954 TPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKN 1013 TP + KLP +V +ANIF G+ VGHY HVKC YQLYDA NV+KV++ GN++DCLYLKN Sbjct 1850 TPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKN 1909 Query 1014 LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFK 1073 LKQTF SVLTT+YLDDVK +EY+PDLSQYYC++GKYYT+ IIKAQF+TFEKVDGVYTNFK Sbjct 1910 LKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFK 1969 Query 1074 LIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPV 1133 L+GH+I + LNAKLGFD + FVEYK+TEWPTATGDVVLA+DDLYV RY GCITFGKPV Sbjct 1970 LVGHSIAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPV 2029 Query 1134 IWLSHEQASLNSLTYFNRPLLVDENKFDVLKVD----------------------DVDDG 1171 +WL+HE+ASL+SLTYFNRP +V ENKF+VL VD D G Sbjct 2030 VWLGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAG 2089 Query 1172 GDIS--------------------ESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSE 1211 ++I+ + + + +++ +KL+GVKKP KVE+SV+VND TSE Sbjct 2090 AGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSE 2149 Query 1212 IKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLR 1271 K VKSLSIVDVYDM LTGC+YVV+TAN LS VN PT+R ++K GM + P LL LR Sbjct 2150 TKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLR 2209 Query 1272 EIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALA 1331 + K F K V+ K AC+ +KW+++ F+WIK+++DNKVIYTTEVASKLT KL LA Sbjct 2210 DEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLA 2269 Query 1332 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 1391 FKNA+ TF+WSVV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IG LPTFVG+I W+K Sbjct 2270 FKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAWFK 2329 Query 1392 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 1451 +TF++ TICD+Y + D+G+++ +CNGS+ C++C++GFDMLDNY AI+VVQ DRR D Sbjct 2330 TTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFD 2389 Query 1452 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 1511 Y +++K+V+EL+++Y+LYT FYPLF LI++Q+LTTWLPE+FML T+HWS RL+V +ANM Sbjct 2390 YISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANM 2449 Query 1512 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 1571 LPA ++RFYI++++ K++ L RHV YGCSKPGCLFCYKRNRS+RVKCST+VGG +RYY Sbjct 2450 LPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYY 2509 Query 1572 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 1631 DVMANGGTGFC+KHQWNC++C+S KPGNTFIT EAA DLSKELKRP++PTD AY +VT+V Sbjct 2510 DVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEV 2569 Query 1632 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLN 1691 KQVGC MRLFYERDGQR YDDVNASLFVD + LLHSKVKGVP+ HVVVVEN+ADKA FL Sbjct 2570 KQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLG 2629 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AAVFYAQSL+RP+LMV+K+LITTANTG SV+ TMFD+YVD++L+++DVD+KSL +++ +A Sbjct 2630 AAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAA 2689 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 H+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ SVMSAV+AG+++TDESCNNLVP Sbjct 2690 HNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVP 2749 Query 1812 TYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCK 1871 TY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D+QH+L+KAC K Sbjct 2750 TYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSK 2809 Query 1872 TGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 TGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2810 TGLKIKLTYNKQEANVPILTTPFSLKGG 2837 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 833 to 2837 Score:2015 bits(7656), Expect:0.0, Method:Compositional matrix adjust., Identities:1207/2008(60%), Positives:1572/2008(78%), Gaps:112/2008(5%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V I+ST K IK+ + LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVEFNDKPKVRKIPSTRK-IKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 A+E LSPCKE + +G+KV A+L++L ++ ++LFDE+G+EV+A+++YC+F+AP+D+D + Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVA 951 Query 121 ESGVEEDDVEGEETDLT-----------------VTSAGEPCVAS--------------- 148 V+ D+ ++++++ + V + +E CVA Sbjct 952 ADVVDADENQDDDAEDSAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEELAEPDAVGS 1011 Query 149 ----EQEESSEILEDTLDDG-------PCVETSDS---QVE----EDVEMSDFADLESVI 190 E +E+ E + +G C ++ D+ QVE E VE S + +L++ + Sbjct 1012 QTPIASAEETEVGEASDREGIAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTEL 1071 Query 191 QD-----------YENVCFE----FYTTEPE--FVKVLDLYVPKATRNNCWLRSVLAVMQ 233 + ++ VC E FY+ ++ KV ++Y P R NCWLRS L VMQ Sbjct 1072 NAPADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ 1131 Query 234 KLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQ 293 LP +FKD ++Q LW+ YK Y Q FVD LV+ +P +I++PQGGYVADFAY FL+ C + Sbjct 1132 SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFAYFFLSQCSFK 1191 Query 294 CVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFC 353 A W+C+ CD+ LKL+GLDAMFFYGDVVSH+CKCG+SM L+ D+P+T HF+++D FC Sbjct 1192 AYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC 1251 Query 354 AFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFE 413 AF T R V++AAC VDVND HSMAVV+GKQID+ VT + +DKFDF++G GM+FSM+ FE Sbjct 1252 AFYTPRKVFRAACAVDVNDCHSMAVVEGKQIDGKVVTKFIGDKFDFMVGYGMTFSMSPFE 1311 Query 414 IAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVK 473 +AQLYGSCITPNVCFVKGD+IKV + V+AEV+VNPANG+MAHG+GVA AIA AG F+K Sbjct 1312 LAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIK 1371 Query 474 ETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDC 533 ET+DMVK++GVC G+CY S+GGKLCK VLN+VGPDAR +GKQ Y+LLER Y+H+NK D Sbjct 1372 ETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN 1431 Query 534 VVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAER 593 VVTTLISAGIFSVP+DVSLTYLLG K+V+LVSNNQ+DFD+I KCQ+T+V GTK L+ + Sbjct 1432 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQ 1491 Query 594 LSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVV 653 L+ N+ R + + T+A ++S + FVS+++VLQ+V +LRHDI LDDDAR FVQ+N+D + Sbjct 1492 LAKNLCRDVKFVTNACSSLFS-ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCL 1550 Query 654 PEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDK 713 P +WR+VNKF ++GVRT+KYFECPGGI + SQ+K FGYVQ+GSF+ A+V+QI+AL+ +K Sbjct 1551 PTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANK 1610 Query 714 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 773 VD+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C YKGKVFFQ+ +LS Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 774 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 833 DL AV+ +F FD+ +LL YY ML C KW VV G+YF+FKQ+NNNC++NV+CLMLQ L+ Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 834 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 893 LKF QWQEAW EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RVV+ + DL+GA C+ Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 894 FEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSN 953 +E+ CKCGVKQEQR GVDAVMHFGTL + DL GY + C+CG KL+HC +F+VPFLICSN Sbjct 1790 LEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPFLICSN 1849 Query 954 TPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKN 1013 TP + KLP +V +ANIF G+ VGHY HVKC YQLYDA NV+KV++ GN++DCLYLKN Sbjct 1850 TPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKN 1909 Query 1014 LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFK 1073 LKQTF SVLTT+YLDDVK +EY+PDLSQYYC++GKYYT+ IIKAQF+TFEKVDGVYTNFK Sbjct 1910 LKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFK 1969 Query 1074 LIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPV 1133 L+GH+I + LNAKLGFD + FVEYK+TEWPTATGDVVLA+DDLYV RY GCITFGKPV Sbjct 1970 LVGHSIAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPV 2029 Query 1134 IWLSHEQASLNSLTYFNRPLLVDENKFDVLKVD----------------------DVDDG 1171 +WL+HE+ASL+SLTYFNRP +V ENKF+VL VD D G Sbjct 2030 VWLGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAG 2089 Query 1172 GDIS--------------------ESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSE 1211 ++I+ + + + +++ +KL+GVKKP KVE+SV+VND TSE Sbjct 2090 AGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSE 2149 Query 1212 IKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLR 1271 K VKSLSIVDVYDM LTGC+YVV+TAN LS VN PT+R ++K GM + P LL LR Sbjct 2150 TKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLR 2209 Query 1272 EIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALA 1331 + K F K V+ K AC+ +KW+++ F+WIK+++DNKVIYTTEVASKLT KL LA Sbjct 2210 DEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLA 2269 Query 1332 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 1391 FKNA+ TF+WSVV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IG LPTFVG+I W+K Sbjct 2270 FKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAWFK 2329 Query 1392 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 1451 +TF++ TICD+Y + D+G+++ +CNGS+ C++C++GFDMLDNY AI+VVQ DRR D Sbjct 2330 TTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFD 2389 Query 1452 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 1511 Y +++K+V+EL+++Y+LYT FYPLF LI++Q+LTTWLPE+FML T+HWS RL+V +ANM Sbjct 2390 YISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANM 2449 Query 1512 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 1571 LPA ++RFYI++++ K++ L RHV YGCSKPGCLFCYKRNRS+RVKCST+VGG +RYY Sbjct 2450 LPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYY 2509 Query 1572 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 1631 DVMANGGTGFC+KHQWNC++C+S KPGNTFIT EAA DLSKELKRP++PTD AY +VT+V Sbjct 2510 DVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEV 2569 Query 1632 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLN 1691 KQVGC MRLFYERDGQR YDDVNASLFVD + LLHSKVKGVP+ HVVVVEN+ADKA FL Sbjct 2570 KQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLG 2629 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AAVFYAQSL+RP+LMV+K+LITTANTG SV+ TMFD+YVD++L+++DVD+KSL +++ +A Sbjct 2630 AAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAA 2689 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 H+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ SVMSAV+AG+++TDESCNNLVP Sbjct 2690 HNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVP 2749 Query 1812 TYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCK 1871 TY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D+QH+L+KAC K Sbjct 2750 TYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSK 2809 Query 1872 TGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 TGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2810 TGLKIKLTYNKQEANVPILTTPFSLKGG 2837 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 833 to 2840 Score:1963 bits(7457), Expect:0.0, Method:Compositional matrix adjust., Identities:1190/2011(59%), Positives:1561/2011(77%), Gaps:115/2011(5%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V+E++ST K IK+++ LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVVFNDKPKVKEVPSTRK-IKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDD---- 116 A+E LSPCKE +G+KV A+L++L D+ ++LFDE+GEEV+AS++YC+F+AP++D Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDEDCVAT 951 Query 117 ---------------------DFLEESGVEEDDVEGEETDLTVTSAG-----EPCVASEQ 150 D EE GV ++V++ ++++ V+ +G EP V + Q Sbjct 952 DVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTGGQEMTEPDVVGSQ 1011 Query 151 EESSEILEDTLDDG-------------------PCVETSDSQVEEDVEMSDFADLESVIQ 191 + E ++++ +C + ++ E VE S +++L++ ++ Sbjct 1012 TPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELN 1071 Query 192 D-----YENV-CFE---------FYTTEPE--FVKVLDLYVPKATRNNCWLRSVLAVMQK 234 YE+V F+ FY+ ++ KV ++Y P R NCWLRS L VMQ Sbjct 1072 APADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQS 1131 Query 235 LPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQC 294 LP +FKD +Q LW+ YK Y Q FVD LV+ P +I++PQGGYVADFAY FL+ C + Sbjct 1132 LPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKV 1191 Query 295 VAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCA 354 A W+C+KC++ LKL+GLDA+FFYGDVVSH+CKCG+SM L+ D+P+T +F+++D FCA Sbjct 1192 HANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMTLLSADIPYTFDFGVRDDKFCA 1251 Query 355 FITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEI 414 F T R V++AAC VDVND HSMAVVDGKQID+ VT + +DKFDF++GHGM+FSM+ FEI Sbjct 1252 FYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEI 1311 Query 415 AQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKE 474 AQLYGSCITPNVCFVKGD+IKV +RV AEV+VNPANG+MAHG+GVA AIA AAG+ F++E Sbjct 1312 AQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINE 1371 Query 475 TTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCV 534 T+DMVK++GVC G+CY STGGKLCK VLN+VGPDAR +G++ Y+LLER Y+H+NK D V Sbjct 1372 TADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNV 1431 Query 535 VTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERL 594 VTTLISAGIFSVP+DVSLTYLLG K+V+LVSNNQ+DFD+I KCQ+T+V GTK L+ +L Sbjct 1432 VTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQL 1491 Query 595 SFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVP 654 + N+ R + + T+A ++S + +FVS+++VLQ+V +LRHDI LDDDAR FVQ+N+D +P Sbjct 1492 AKNLCRDVKFVTNACSSLFS-ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP 1550 Query 655 EGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKV 714 +WR+VNKF ++GVRT+KYFECPG + + SQ+K FGYVQ+GSF+ A+V+QI+AL+ +KV Sbjct 1551 TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV 1610 Query 715 DILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSED 774 D+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C KGKVFFQ+ LS+ D Sbjct 1611 DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD 1670 Query 775 LKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNL 834 L AV+ +F FD+ +LL YY+ML C KW VV G+YF+FKQ+NNNC++NV+CLMLQ L+L Sbjct 1671 LAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSL 1729 Query 835 KFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDF 894 KF QW+ + EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RV + + DL+GA CD+ Sbjct 1730 KFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDL 1789 Query 895 EIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNT 954 E+ CKCGVKQEQR GVDAVMHFGTL + +L GY + C+CG KL+HC +F+VPFLICSNT Sbjct 1790 EFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNT 1849 Query 955 PASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNL 1014 P + KLP +V +ANIF G+ VGHY HVKC YQLYDA NV KV++ GN++DCLYLKNL Sbjct 1850 PEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNL 1909 Query 1015 KQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKL 1074 KQTF SVLTTYYLDDVK + Y+PDLSQYYC++GKYYT+ IIKAQF+TFEKV+GVYTNFKL Sbjct 1910 KQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKL 1969 Query 1075 IGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVI 1134 +GH I + LNAKLGFD + F+EYK+TEWPTATGDVVLA+DDLYV RY GC+TFGKPVI Sbjct 1970 VGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVI 2029 Query 1135 WLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGG---------------------- 1172 W +HE+ASL+SLTYFNRP +V ENKF+VL VD + + Sbjct 2030 WRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAI 2089 Query 1173 DISESDAKESKE-------------------INIIKLSGVK-----KPFKVEDSVIVNDD 1208 + AKE K + + + VK KP K + SV+VND Sbjct 2090 STEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDP 2149 Query 1209 TSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLL 1268 TSE K VKSLSIVDVYDM LTGCRYVV+TAN LS +N PT+R ++K GM+ + IP +LL Sbjct 2150 TSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLL 2209 Query 1269 NLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 1328 LR+ K F K V+ K AC+ +KW+++ F+WIK+++DNKVIYTTEVASKLT KL Sbjct 2210 LLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLC 2269 Query 1329 ALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQ 1388 LAFKNA+ TF+WSVV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IG LP FVG+I Sbjct 2270 CLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVA 2329 Query 1389 WIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRA 1448 W+K+TF+++TICD+Y + D+G+++ +CNGS+ C++C++GFDMLDNY +I+VVQ DRR Sbjct 2330 WVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRV 2389 Query 1449 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 1508 DY +++K+V+EL+++Y+LYT FYPLF L+++Q+LTTWLPE+FML+T+HWS RL+V + Sbjct 2390 SFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFV 2449 Query 1509 ANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMI 1568 ANMLPA ++RFYI++++ K++ L RHV YGCSKPGCLFCYKRNRS+RVKCST+VGG + Sbjct 2450 ANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSL 2509 Query 1569 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 1628 RYYDVMANGGTGFC+KHQWNC++C+S KPGNTFIT EAA DLSKELKRP++PTD AY +V Sbjct 2510 RYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSV 2569 Query 1629 TDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKAN 1688 +VKQVGC MRLFYERDGQR YDDV+ASLFVD + LLHSKVKGVP+ HVVVVEN+ADKA Sbjct 2570 IEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAG 2629 Query 1689 FLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 1748 FLNAAVFYAQSL+RP+LMV+K+LITTANTG SV+ TMFD+YV ++L +DVD+KSL +++ Sbjct 2630 FLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFV 2689 Query 1749 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 1808 +AH+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ SVM+AV+AG+E+TDESCNN Sbjct 2690 NAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNN 2749 Query 1809 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 1868 LVPTY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D+QH+L+KA Sbjct 2750 LVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKA 2809 Query 1869 CCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 C KTGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2810 CVKTGLKIKLTYNKQEANVPILTTPFSLKGG 2840 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 833 to 2840 Score:1963 bits(7456), Expect:0.0, Method:Compositional matrix adjust., Identities:1190/2011(59%), Positives:1561/2011(77%), Gaps:115/2011(5%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 G++V F+++P V+E++ST K IK+++ LD F+++L+ AC+ FEVD V ++E+ VV+D Sbjct 833 GKKVVFNDKPKVKEVPSTRK-IKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDD---- 116 A+E LSPCKE +G+KV A+L++L D+ ++LFDE+GEEV+AS++YC+F+AP++D Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDEDCVAT 951 Query 117 ---------------------DFLEESGVEEDDVEGEETDLTVTSAG-----EPCVASEQ 150 D EE GV ++V++ ++++ V+ +G EP V + Q Sbjct 952 DVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTGGQEMTEPDVVGSQ 1011 Query 151 EESSEILEDTLDDG-------------------PCVETSDSQVEEDVEMSDFADLESVIQ 191 + E ++++ +C + ++ E VE S +++L++ ++ Sbjct 1012 TPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELN 1071 Query 192 D-----YENV-CFE---------FYTTEPE--FVKVLDLYVPKATRNNCWLRSVLAVMQK 234 YE+V F+ FY+ ++ KV ++Y P R NCWLRS L VMQ Sbjct 1072 APADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQS 1131 Query 235 LPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQC 294 LP +FKD +Q LW+ YK Y Q FVD LV+ P +I++PQGGYVADFAY FL+ C + Sbjct 1132 LPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKV 1191 Query 295 VAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCA 354 A W+C+KC++ LKL+GLDA+FFYGDVVSH+CKCG+SM L+ D+P+T +F+++D FCA Sbjct 1192 HANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMTLLSADIPYTFDFGVRDDKFCA 1251 Query 355 FITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEI 414 F T R V++AAC VDVND HSMAVVDGKQID+ VT + +DKFDF++GHGM+FSM+ FEI Sbjct 1252 FYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEI 1311 Query 415 AQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKE 474 AQLYGSCITPNVCFVKGD+IKV +RV AEV+VNPANG+MAHG+GVA AIA AAG+ F++E Sbjct 1312 AQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINE 1371 Query 475 TTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCV 534 T+DMVK++GVC G+CY STGGKLCK VLN+VGPDAR +G++ Y+LLER Y+H+NK D V Sbjct 1372 TADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNV 1431 Query 535 VTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERL 594 VTTLISAGIFSVP+DVSLTYLLG K+V+LVSNNQ+DFD+I KCQ+T+V GTK L+ +L Sbjct 1432 VTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQL 1491 Query 595 SFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVP 654 + N+ R + + T+A ++S + +FVS+++VLQ+V +LRHDI LDDDAR FVQ+N+D +P Sbjct 1492 AKNLCRDVKFVTNACSSLFS-ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP 1550 Query 655 EGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKV 714 +WR+VNKF ++GVRT+KYFECPG + + SQ+K FGYVQ+GSF+ A+V+QI+AL+ +KV Sbjct 1551 TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV 1610 Query 715 DILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSED 774 D+L TVDGVNF + V+ GE FGK+LG+VFCDG+NVTK +C KGKVFFQ+ LS+ D Sbjct 1611 DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD 1670 Query 775 LKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNL 834 L AV+ +F FD+ +LL YY+ML C KW VV G+YF+FKQ+NNNC++NV+CLMLQ L+L Sbjct 1671 LAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSL 1729 Query 835 KFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDF 894 KF QW+ + EFRSG+P RFVSLVLAKG+FKF +P+DS DF+RV + + DL+GA CD+ Sbjct 1730 KFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDL 1789 Query 895 EIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNT 954 E+ CKCGVKQEQR GVDAVMHFGTL + +L GY + C+CG KL+HC +F+VPFLICSNT Sbjct 1790 EFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNT 1849 Query 955 PASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNL 1014 P + KLP +V +ANIF G+ VGHY HVKC YQLYDA NV KV++ GN++DCLYLKNL Sbjct 1850 PEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNL 1909 Query 1015 KQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKL 1074 KQTF SVLTTYYLDDVK + Y+PDLSQYYC++GKYYT+ IIKAQF+TFEKV+GVYTNFKL Sbjct 1910 KQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKL 1969 Query 1075 IGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVI 1134 +GH I + LNAKLGFD + F+EYK+TEWPTATGDVVLA+DDLYV RY GC+TFGKPVI Sbjct 1970 VGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVI 2029 Query 1135 WLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGG---------------------- 1172 W +HE+ASL+SLTYFNRP +V ENKF+VL VD + + Sbjct 2030 WRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAI 2089 Query 1173 DISESDAKESKE-------------------INIIKLSGVK-----KPFKVEDSVIVNDD 1208 + AKE K + + + VK KP K + SV+VND Sbjct 2090 STEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDP 2149 Query 1209 TSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLL 1268 TSE K VKSLSIVDVYDM LTGCRYVV+TAN LS +N PT+R ++K GM+ + IP +LL Sbjct 2150 TSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLL 2209 Query 1269 NLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 1328 LR+ K F K V+ K AC+ +KW+++ F+WIK+++DNKVIYTTEVASKLT KL Sbjct 2210 LLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLC 2269 Query 1329 ALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQ 1388 LAFKNA+ TF+WSVV+RG ++AT+FLLWFNF+YANVI+SDFYLP+IG LP FVG+I Sbjct 2270 CLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVA 2329 Query 1389 WIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRA 1448 W+K+TF+++TICD+Y + D+G+++ +CNGS+ C++C++GFDMLDNY +I+VVQ DRR Sbjct 2330 WVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRV 2389 Query 1449 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 1508 DY +++K+V+EL+++Y+LYT FYPLF L+++Q+LTTWLPE+FML+T+HWS RL+V + Sbjct 2390 SFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFV 2449 Query 1509 ANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMI 1568 ANMLPA ++RFYI++++ K++ L RHV YGCSKPGCLFCYKRNRS+RVKCST+VGG + Sbjct 2450 ANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSL 2509 Query 1569 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 1628 RYYDVMANGGTGFC+KHQWNC++C+S KPGNTFIT EAA DLSKELKRP++PTD AY +V Sbjct 2510 RYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSV 2569 Query 1629 TDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKAN 1688 +VKQVGC MRLFYERDGQR YDDV+ASLFVD + LLHSKVKGVP+ HVVVVEN+ADKA Sbjct 2570 IEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAG 2629 Query 1689 FLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 1748 FLNAAVFYAQSL+RP+LMV+K+LITTANTG SV+ TMFD+YV ++L +DVD+KSL +++ Sbjct 2630 FLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFV 2689 Query 1749 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 1808 +AH+S+K+G Q+ +V+DTF++CAR+ C+IDSDV+TK ++ SVM+AV+AG+E+TDESCNN Sbjct 2690 NAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNN 2749 Query 1809 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 1868 LVPTY+K+D IVAADLGVLIQN+AKHVQ+NVAK A V+CIWSVDAFNQLS+D+QH+L+KA Sbjct 2750 LVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKA 2809 Query 1869 CCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 C KTGLK+KLTYNKQ ANV++LTTPFSLKGG Sbjct 2810 CVKTGLKIKLTYNKQEANVPILTTPFSLKGG 2840 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1013 to 2808 Score:1885 bits(7161), Expect:0.0, Method:Compositional matrix adjust., Identities:1107/1797(62%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGE--ETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 168 +D+D + +ED V G+ + D+ ++ V + +++ EI+ + DD V Sbjct 1013 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVT 1072 Query 169 TSDSQVEEDV-EMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 D + E V + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1073 GDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1132 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGGYVADFAY Sbjct 1133 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAY 1192 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1193 WFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1252 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1253 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1312 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE+AQLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1313 MSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1372 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1373 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1432 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1433 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1492 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1493 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1552 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1553 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1612 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1613 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1672 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1673 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1731 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1732 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1791 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1792 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1851 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1852 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1911 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1912 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 1971 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 1972 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2031 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIWL H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2032 GCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2091 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2092 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2151 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2152 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2211 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2212 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2271 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2272 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2331 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2332 LCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2391 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2392 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2451 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2452 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2511 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2512 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2571 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2572 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2631 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 +TMFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2632 QTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2691 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK Sbjct 2692 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKA 2751 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +D+FNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2752 ANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 810 to 1007 Score:120 bits(440), Expect:5e-26, Method:Compositional matrix adjust., Identities:71/201(35%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CK+ VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 993 to 2788 Score:1885 bits(7159), Expect:0.0, Method:Compositional matrix adjust., Identities:1103/1797(61%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGEETD---LTVTSAGEPCVASEQEESSEILEDTLDDGPCV 167 +D+D + +ED V G++ D +T + +E V++++++ + D D+ Sbjct 993 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEDVVTGDNNDEESVTGDNDDQIVVT 1052 Query 168 ETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 ++E + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1053 GDDVDDIESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1112 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGGYVADFAY Sbjct 1113 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAY 1172 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1173 WFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1232 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1233 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1292 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE+AQLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1293 MSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1352 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1353 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1412 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1413 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1472 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1473 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1532 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1533 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1592 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1593 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1652 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1653 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1711 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1712 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1771 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1772 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1831 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1832 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1891 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1892 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 1951 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 1952 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2011 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIW+ H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2012 GCETFGKPVIWFCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2071 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2072 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2131 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2132 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2191 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2192 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2251 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2252 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2311 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2312 LCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2371 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2372 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2431 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2432 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2491 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2492 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2551 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2552 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2611 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 + MFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2612 QIMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2671 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK+ Sbjct 2672 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKV 2731 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +DAFNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2732 ANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 810 to 1007 Score:121 bits(441), Expect:4e-26, Method:Compositional matrix adjust., Identities:72/201(36%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CKE VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1013 to 2808 Score:1884 bits(7158), Expect:0.0, Method:Compositional matrix adjust., Identities:1107/1797(62%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGE--ETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 168 +D+D + +ED V G+ + D+ ++ V + +++ EI+ + DD V Sbjct 1013 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVT 1072 Query 169 TSDSQVEEDV-EMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 D + E V + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1073 GDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1132 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGGYVADFAY Sbjct 1133 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAY 1192 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1193 WFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1252 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1253 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1312 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE+AQLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1313 MSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1372 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1373 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1432 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1433 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1492 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1493 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1552 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1553 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1612 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1613 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1672 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1673 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1731 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1732 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1791 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1792 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1851 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1852 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1911 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1912 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 1971 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 1972 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2031 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIWL H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2032 GCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2091 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2092 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2151 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2152 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2211 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2212 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2271 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2272 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2331 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2332 LCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2391 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2392 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2451 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2452 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2511 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2512 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2571 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2572 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2631 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 +TMFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2632 QTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2691 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK Sbjct 2692 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKA 2751 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +D+FNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2752 ANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 810 to 1007 Score:120 bits(440), Expect:5e-26, Method:Compositional matrix adjust., Identities:71/201(35%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CK+ VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1043 to 2838 Score:1884 bits(7155), Expect:0.0, Method:Compositional matrix adjust., Identities:1104/1797(61%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGE--ETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 168 +D+D + +ED V G+ + D+ ++ V + +++ EI+ + DD V Sbjct 1043 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEEIVTGDNDDQIVVT 1102 Query 169 TSD-SQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 D ++E + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1103 GDDVDDIESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1162 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGG+VADFAY Sbjct 1163 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGFVADFAY 1222 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1223 WFLNQFDINAYANWCCLKCGFSFDLNGLDALFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1282 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1283 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1342 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE++QLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1343 MSFSMSSFELPQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1402 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1403 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1462 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1463 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1522 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1523 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1582 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1583 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1642 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1643 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1702 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1703 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1761 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1762 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1821 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1822 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1881 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1882 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1941 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1942 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 2001 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 2002 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2061 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIW+ H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2062 GCETFGKPVIWFCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2121 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2122 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2181 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2182 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2241 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2242 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2301 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2302 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2361 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2362 LCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2421 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2422 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2481 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2482 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2541 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2542 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2601 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2602 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2661 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 +TMFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2662 QTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2721 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK Sbjct 2722 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKA 2781 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +DAFNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2782 ANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 810 to 1007 Score:121 bits(441), Expect:4e-26, Method:Compositional matrix adjust., Identities:72/201(36%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CKE VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 993 to 2788 Score:1882 bits(7149), Expect:0.0, Method:Compositional matrix adjust., Identities:1103/1797(61%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGEETD---LTVTSAGEPCVASEQEESSEILEDTLDDGPCV 167 +D+D + +ED V G++ D +T + +E V++++++ + D D+ Sbjct 993 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEDVVTGDNNDEESVTGDNDDQIVVT 1052 Query 168 ETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 ++E + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1053 GDDVDDIESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1112 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGGYVADFAY Sbjct 1113 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAY 1172 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1173 WFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1232 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1233 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1292 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE+AQLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1293 MSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1352 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1353 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1412 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1413 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1472 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1473 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1532 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1533 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1592 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1593 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1652 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1653 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1711 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1712 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1771 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1772 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1831 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1832 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1891 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1892 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 1951 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 1952 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2011 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIW+ H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2012 GCETFGKPVIWFCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2071 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2072 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2131 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2132 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2191 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2192 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2251 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2252 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2311 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2312 LCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2371 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2372 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2431 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2432 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2491 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2492 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2551 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2552 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2611 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 + MFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2612 QIMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2671 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK+ Sbjct 2672 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKV 2731 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +DAFNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2732 ANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 810 to 1007 Score:121 bits(441), Expect:4e-26, Method:Compositional matrix adjust., Identities:72/201(36%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CKE VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1043 to 2838 Score:1881 bits(7146), Expect:0.0, Method:Compositional matrix adjust., Identities:1104/1797(61%), Positives:1437/1797(79%), Gaps:9/1797(0%) Query 111 TAPEDDDFLEESGVEEDDVEGE--ETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 168 +D+D + +ED V G+ + D+ ++ V + +++ EI+ + DD V Sbjct 1043 GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEEIVTGDNDDQIVVT 1102 Query 169 TSD-SQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPE---FVKVLDLYVPKATRNNCW 224 D ++E + + L + Y++ F Y + E + KV +L P T+ NCW Sbjct 1103 GDDVDDIESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCW 1162 Query 225 LRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAY 284 LRSVL VMQKLP +FKD ++++W+ YK Y+Q FVD L+ IP IV+PQGG+VADFAY Sbjct 1163 LRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGFVADFAY 1222 Query 285 WFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAH 344 WFL D + A W C+KC++++ L+GLDA+FFYGD+VSHVCKCG++M LI D+P T H Sbjct 1223 WFLNQFDINAYANWCCLKCGFSFDLNGLDALFFYGDIVSHVCKCGHNMTLIAADLPCTLH 1282 Query 345 FALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHG 404 F+L D FCAF T + ++ AAC VDVN HS+AV+++ QID+ VT +++DKFDFI+G G Sbjct 1283 FSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYG 1342 Query 405 MSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIA 464 MSFSM++FE++QLYG CITPNVCFVKGDII+V++ VKA+V+VNPANGHM HGGGVAKAIA Sbjct 1343 MSFSMSSFELPQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIA 1402 Query 465 VAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERV 524 VAAG++F KET+ MVKSKGVC GDCYVSTGGKLCKT+LN+VGPDAR +G+QSY LL R Sbjct 1403 VAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARA 1462 Query 525 YKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAV 584 YKHLN+YDC ++TLISAGIFSVP+DVSLTYLLG +KQV+LVSNN+EDFD+I KCQIT+V Sbjct 1463 YKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSV 1522 Query 585 EGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDART 644 GTK LA RL+ NVGR I +ETDA KL+LS D FVS +V+Q+VL LRHDI L++D R Sbjct 1523 VGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRD 1582 Query 645 FVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVA 704 ++ S++ +P +WR++NKF INGV+TVKYFECP +I ICSQ+K FGYV +GSF KATV Sbjct 1583 YLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVN 1642 Query 705 QIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVF 764 Q+ L+ K+D+LLTVDGVNF + + VGE FGK LGNVFCDG++VTK KC Y +K++ Sbjct 1643 QVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKIL 1702 Query 765 FQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNV 824 +Q++NLS D+ AV+SSF FDQ++LLAYYN L C KW VV NG +F+F Q++NNC+VNV Sbjct 1703 YQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVC-KWSVVVNGPFFSFEQSHNNCYVNV 1761 Query 825 SCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ 884 +CLMLQ +NLKF+ QWQEAW EFR+GRP R+V+LVLAKG FKF++P+D+ DF+RVV+ Q Sbjct 1762 ACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQ 1821 Query 885 VDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRF 944 DL+GAIC++E+ C CG+KQE R GVDAVMHFGTL++ DL GY ++C+C+ +++HC ++ Sbjct 1822 ADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKL 1881 Query 945 DVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGN 1004 +VPFLICSNTP S LP +V +AN+F G VGHY H+KC +YQ YDA +VKK T+V+G Sbjct 1882 NVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGC 1941 Query 1005 LSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEK 1064 L+DCLYLKNL QTF S+LT Y+LDDV + YNPDLSQYYCD GKYYT+ IIKAQFK F K Sbjct 1942 LTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAK 2001 Query 1065 VDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1124 VDGVYTNFKL+GH IC LN KLGF+ FVEYKVT WP ATGDVVLA+DDLYVKRY + Sbjct 2002 VDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2061 Query 1125 GCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDG--GDISESDAKES 1182 GC TFGKPVIW+ H++ASLNSLTYFN+P + EN++ VL VD V + G++ S Sbjct 2062 GCETFGKPVIWFCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQ 2121 Query 1183 KEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALS 1242 + +KL GV+K K+ED++IVND+ S IK VKSLS+VDV DM LTGC YVV+ AN LS Sbjct 2122 ISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELS 2181 Query 1243 MAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLF 1302 V+ PT+R +I++G+ ++IPIDLL LR+ + + V K + + + F+KWLF+ +F Sbjct 2182 RLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVF 2241 Query 1303 GWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFI 1362 + + ++ D+ ++YTTE+ASK+T +L LA+KNAF TF+WS+ +G ++AT+FL+WFNF+ Sbjct 2242 SLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFL 2301 Query 1363 YANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQ 1422 Y NVIFSDFYLP+I+ +P FVG+I WIK+TF+LVTICD+YS +VGF +++CNGS+ C+ Sbjct 2302 YINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICE 2361 Query 1423 FCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI 1482 +C +GFDMLD Y AID VQYE DRR + DY +++K+++EL+++Y+LYT WFYPLF LI++ Sbjct 2362 LCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGL 2421 Query 1483 QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCS 1542 Q++TTWLP+LFML T+HW +R++V +ANMLPA V++RFYI++++ K+ ++RH+ YGC+ Sbjct 2422 QLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCN 2481 Query 1543 KPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFI 1602 K+GCLFCYKRN S+RVKCSTIVGG+IRYYD+ ANGGTGFC KHQWNC++C+S+KPGNTFI Sbjct 2482 KAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFI 2541 Query 1603 TVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYS 1662 TVEAA++LSKELKRP++PTD + VTD+KQVGC MRLFY+RDGQR YDDV+ASLFVD + Sbjct 2542 TVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDIN 2601 Query 1663 NLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVT 1722 NLLHSKVK VPN+ VVVVE+DAD+ANFLNA VFYAQSL+RPIL+VDK+LITTA G SVT Sbjct 2602 NLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVT 2661 Query 1723 ETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDV 1782 +TMFDVYVDTF+S FDVD+KS+N ++ AH+S+++G Q+ KVLDTF++C RK CSIDSDV Sbjct 2662 QTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDV 2721 Query 1783 DTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKI 1842 +T+ ++ S++SAV+AGLE+TDE+ NNLVPTYLK+DNIVAADLGVLIQN+AKHVQGNVAK Sbjct 2722 ETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKA 2781 Query 1843 AGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 A +SCIW +DAFNQL++D+QHKLKKAC KTGLKLKLT+NKQ A+V++LTTPFSLKGG Sbjct 2782 ANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 810 to 1007 Score:120 bits(440), Expect:5e-26, Method:Compositional matrix adjust., Identities:72/201(36%), Positives:125/201(62%), Gaps:9/201(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 GR+V F+E+P V EI+S T+KV ++LD F+ IL C+ FEV+ V +++F AVV D Sbjct 810 GRKVNFNEKPVVMEIPSL-MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLE 120 AIE+ L++CKE VG +V AFL+KL++N ++LFDEAG+E +AS++YC+F+ + +D + Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 121 ESGVEE------DDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQV 174 +VE+ +D ++ D+ ++ V + +++ +++ + DD V + Sbjct 929 SEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND-- 986 Query 175 EEDVEMSDFADLESVIQDYEN 195 +EDV +D D + V D ++ Sbjct 987 DEDVVTGDNDDEDVVTGDNDD 1007 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3] Sequence ID: P0C6F8.1 Length: 4376 Range 1: 1536 to 2734 Score:406 bits(1528), Expect:1e-119, Method:Compositional matrix adjust., Identities:357/1230(29%), Positives:681/1230(55%), Gaps:72/1230(5%) Query 711 LDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNL 770 + + ++ TVD N+ ++V ++ ++G+ +G + DG +VTK K ++N GK FF + Sbjct 1536 VKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLP-- 1593 Query 771 SSEDLKAVRSSFNF----DQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSC 826 S + L++ +F++ D+ L Y + L + KW+ G ++K A+NNC+++ Sbjct 1594 SDDTLRS--EAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1651 Query 827 LMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVD 886 L LQ +++KF+ QEA R+G +A F +L+LA + G+ +D R+ + ++ + + Sbjct 1652 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1711 Query 887 LTGAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRF 944 L +A +++ CK CG K GV+AVM GTLS ++L G ++ C CG++ + V+ Sbjct 1712 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 1771 Query 945 DVPFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQS-YQLYDASNVKKVTDV 1001 + +F++ S PA KL +G AN + G+ + GHY H+ ++ Y++ D++++ K+++ Sbjct 1772 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRV-DGAHLTKMSEY 1830 Query 1002 TGNLSDCLYL-KNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFK 1060 G ++D +Y + ++K+V +Y LD+V E +P L YY G YYT++ I Sbjct 1831 KGPVTDVFYKETSYTTAIKPV--SYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPI-DLVP 1887 Query 1061 TFEKVDGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLY 1118 T ++ + NFKL + D LN GF + E VT P GDVV Y Sbjct 1888 TQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHY 1946 Query 1119 VKRYERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDV 1168 + +G KP++W H + + N TY + + N F+VL V+D Sbjct 1947 STSFKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDT 2004 Query 1169 DDGGDISESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSI 1220 ++ ++++ +++ + +++ + V+K + V ++VI++ +K + L+ Sbjct 2005 QGMDNLA-CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGH 2063 Query 1221 VDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVV 1280 D+ + ++ +N LS+A+ + T+ ++ V+ + L ++ + V+ Sbjct 2064 EDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVI 2123 Query 1281 KA--VRNKISACF-NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFL 1337 + +++ + F N++ ++ LLF + +T S++ L + KN+ Sbjct 2124 TSNCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVK 2175 Query 1338 TF-KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 1396 + K + + + F F ++ +++ + L + ++ + +G S++++ Sbjct 2176 SVAKLCLDVCINYVKSPKFSKLFTIV-MWLLLLSICLGSLTYVTAVLGVCL----SSLGV 2230 Query 1397 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 1452 + CD LY ++C+G ++C CL+G+D LD+Y A++ +Q ++ Sbjct 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQ--VTISSYKLD 2288 Query 1453 TGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVRLLVSLANM 1511 L + E +++Y L+T FY L++L +I Q + ++ F+ ++ W +++++S+ +M Sbjct 2289 LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQM 2345 Query 1512 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 1571 P +R YI++ASF + + H+ GC+ + C+ CYKRNR+ RV C+TIV G+ R + Sbjct 2346 APVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSF 2405 Query 1572 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 1631 V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD + V V Sbjct 2406 YVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSV 2465 Query 1632 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 1689 ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + + + + Sbjct 2466 TVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAA 2525 Query 1690 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 1749 +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V L+AL+A Sbjct 2526 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 2585 Query 1750 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 1809 TAHS + +G + VL TF+S AR++ +D+DVDTK + + + + +++E+T++SCNN+ Sbjct 2586 TAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNF 2644 Query 1810 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 1869 + TY K +N+ + DLG I+ +A+H++++VAK VS +W+V + LS +++ +++ A Sbjct 2645 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAA 2704 Query 1870 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 K + ++LT V+V+TT +SLKGG Sbjct 2705 KKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 Range 2: 1017 to 1159 Score:64.5 bits(225), Expect:9e-09, Method:Compositional matrix adjust., Identities:48/145(33%), Positives:85/145(58%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K ++ K+ V+VN+AN H+ HGGGVA A+ A+ +E+ + ++ +G + G+ Sbjct 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L L+VVGP+ ++ + LL R Y ++N D +++ L+SAGIF+ + S Sbjct 1077 LLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQS 1134 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + QV L N++ +D I Sbjct 1135 LKMCVEIVRTQVYLAVNDKSLYDQI 1159 Range 3: 822 to 928 Score:61.0 bits(212), Expect:1e-07, Method:Compositional matrix adjust., Identities:39/112(35%), Positives:69/112(61%), Gaps:5/112(4%) Query 2 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 61 + VTF E+ TV E+ + K +K+ +ELD + +LN C+V+ V+ ++ EF VV +A Sbjct 822 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 879 Query 62 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 + L P +L + ++ L+ +++LFD+AGEE L+S++YC+F +P Sbjct 880 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPP 928 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 1536 to 2734 Score:406 bits(1526), Expect:2e-119, Method:Compositional matrix adjust., Identities:357/1230(29%), Positives:681/1230(55%), Gaps:72/1230(5%) Query 711 LDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNL 770 + + ++ TVD N+ ++V ++ ++G+ +G + DG +VTK K ++N GK FF + Sbjct 1536 VKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLP-- 1593 Query 771 SSEDLKAVRSSFNF----DQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSC 826 S + L++ +F++ D+ L Y + L + KW+ G ++K A+NNC+++ Sbjct 1594 SDDTLRS--EAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1651 Query 827 LMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVD 886 L LQ +++KF+ QEA R+G +A F +L+LA + G+ +D R+ + ++ + + Sbjct 1652 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1711 Query 887 LTGAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRF 944 L +A +++ CK CG K GV+AVM GTLS ++L G ++ C CG++ + V+ Sbjct 1712 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 1771 Query 945 DVPFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQS-YQLYDASNVKKVTDV 1001 + +F++ S PA KL +G AN + G+ + GHY H+ ++ Y++ D++++ K+++ Sbjct 1772 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRV-DGAHLTKMSEY 1830 Query 1002 TGNLSDCLYL-KNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFK 1060 G ++D +Y + ++K+V +Y LD+V E +P L YY G YYT++ I Sbjct 1831 KGPVTDVFYKETSYTTAIKPV--SYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPI-DLVP 1887 Query 1061 TFEKVDGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLY 1118 T ++ + NFKL + D LN GF + E VT P GDVV Y Sbjct 1888 TQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHY 1946 Query 1119 VKRYERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDV 1168 + +G KP++W H + + N TY + + N F+VL V+D Sbjct 1947 STSFKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDT 2004 Query 1169 DDGGDISESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSI 1220 ++ ++++ +++ + +++ + V+K + V ++VI++ +K + L+ Sbjct 2005 QGMDNLA-CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGH 2063 Query 1221 VDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVV 1280 D+ + ++ +N LS+A+ + T+ ++ V+ + L ++ + V+ Sbjct 2064 EDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVI 2123 Query 1281 KA--VRNKISACF-NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFL 1337 + +++ + F N++ ++ LLF + +T S++ L + KN+ Sbjct 2124 TSNCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVK 2175 Query 1338 TF-KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 1396 + K + + + F F ++ +++ + L + ++ + +G S++++ Sbjct 2176 SVAKLCLDVCINYVKSPKFSKLFTIV-MWLLLLSICLGSLTYVTAVLGVCL----SSLGV 2230 Query 1397 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 1452 + CD LY ++C+G ++C CL+G+D LD+Y A++ +Q ++ Sbjct 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQ--VTISSYKLD 2288 Query 1453 TGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVRLLVSLANM 1511 L + E +++Y L+T FY L++L +I Q + ++ F+ ++ W +++++S+ +M Sbjct 2289 LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQM 2345 Query 1512 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 1571 P +R YI++ASF + + H+ GC+ + C+ CYKRNR+ RV C+TIV G+ R + Sbjct 2346 APVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSF 2405 Query 1572 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 1631 V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD + V V Sbjct 2406 YVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSV 2465 Query 1632 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 1689 ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + + + + Sbjct 2466 TVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAA 2525 Query 1690 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 1749 +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V L+AL+A Sbjct 2526 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 2585 Query 1750 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 1809 TAHS + +G + VL TF+S AR++ +D+DVDTK + + + + +++E+T++SCNN+ Sbjct 2586 TAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNF 2644 Query 1810 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 1869 + TY K +N+ + DLG I+ +A+H++++VAK VS +W+V + LS +++ +++ A Sbjct 2645 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAA 2704 Query 1870 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 K + ++LT V+V+TT +SLKGG Sbjct 2705 KKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 Range 2: 1017 to 1159 Score:64.7 bits(226), Expect:8e-09, Method:Compositional matrix adjust., Identities:48/145(33%), Positives:85/145(58%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K ++ K+ V+VN+AN H+ HGGGVA A+ A+ +E+ + ++ +G + G+ Sbjct 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L L+VVGP+ ++ + LL R Y ++N D +++ L+SAGIF+ + S Sbjct 1077 LLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQS 1134 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + QV L N++ +D I Sbjct 1135 LKMCVEIVRTQVYLAVNDKSLYDQI 1159 Range 3: 822 to 928 Score:61.0 bits(212), Expect:1e-07, Method:Compositional matrix adjust., Identities:36/112(32%), Positives:66/112(58%), Gaps:5/112(4%) Query 2 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 61 + VTF E+ ++ K +K+ +ELD + +LN C+V+ V+ ++ EF VV +A Sbjct 822 KGVTFGEDTVLE--VQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 879 Query 62 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 + L P +L + ++ L+ +++LFD+AGEE L+S++YC+F +P Sbjct 880 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPP 928 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like protease; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTC1.1 Length: 4405 Range 1: 1567 to 2763 Score:400 bits(1503), Expect:2e-117, Method:Compositional matrix adjust., Identities:357/1239(29%), Positives:681/1239(54%), Gaps:94/1239(7%) Query 713 KVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSS 772 + ++ TVD +N+ + V ++ ++G+ +G + DG +VTK K + + GK F+ + N Sbjct 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPN--D 1624 Query 773 EDLKAVRSSFNF---DQKELLA-YYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 + L+ +F++ + +L+ Y + L + KW+ ++K A+NNC++ + L Sbjct 1625 DTLRV--EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLT 1682 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLT 888 LQ ++LKF+ Q+A R+G +A F +L+LA G+ +D R+ + +F + +L Sbjct 1683 LQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLD 1742 Query 889 GAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRFDV 946 + +++ CK CG +Q GV+AVM GTLS E++ G + C+CGK+ V+ + Sbjct 1743 SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQES 1802 Query 947 PFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQSYQLY--DASNVKKVTDVT 1002 PF++ S PA L G A+ + G+ + GHY H+ ++ LY D++ + K ++ Sbjct 1803 PFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET--LYCIDGALLTKSSEYK 1860 Query 1003 GNLSDCLYL-KNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIK-AQFK 1060 G ++D +Y ++ T+K+V TY LD+V E +P L +YY + Y+T++ I + Sbjct 1861 GPITDVFYKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQ 1918 Query 1061 TFEKVDGVYTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLY 1118 + ++ + NFK++ + I D LN G+ + E KVT P GDVV Y Sbjct 1919 PYP--NASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHY 1975 Query 1119 VKRYERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDV 1168 + +G + KP++W H + + N TY + + N FDVLK +D Sbjct 1976 TPSFKKGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDA 2033 Query 1169 DDGGDISESDAKESKEINIIKLSGVKK--------PFKVEDSVIVNDDTSEIKYVKSLSI 1220 ++ ++++ D K E +++ + ++K V + +I++ + +K ++ Sbjct 2034 QGMDNLACEDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGH 2092 Query 1221 VDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN- 1278 D+ + ++ +N LS + ++ + G++ V S+P D + KP +N Sbjct 2093 TDLMAAYVDNSSLTIKKPNELSRVLG---LKTLATHGLAAVNSVPWDTIA-NYAKPFLNK 2148 Query 1279 VVKAVRNKISACFN-----FIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALA-- 1331 VV + N ++ C+N ++ +F LL+ ++ + + +++ ++ + V Sbjct 2149 VVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGK 2208 Query 1332 --FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQW 1389 + +F +K + ++ +I I +WF ++ L + + + +G + Sbjct 2209 FCLEASFNYLKSPNFSK---LINII--IWF-------LLLSVCLGSLIYSTAALGVL--- 2253 Query 1390 IKSTFSLVTICDLY-----SIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEA 1444 S +++ + C Y + +V + YC GSI+C CL+G+D LD Y +++ +Q Sbjct 2254 -MSNLGMPSYCTGYREGYLNSTNVTI-ATYCTGSIPCSVCLSGLDSLDTYPSLETIQITI 2311 Query 1445 D--RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSV 1502 ++ + + +V E +++Y L+T FY L +Q++ + ++ F+ ++ W + Sbjct 2312 SSFKWDLTAFG----LVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLM 2365 Query 1503 RLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCST 1562 +L+++L +M P +R YI++ASF + + HV GC+ + C+ CYKRNR+ RV C+T Sbjct 2366 WLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTT 2425 Query 1563 IVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTD 1622 IV G+ R + V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD Sbjct 2426 IVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTD 2485 Query 1623 VAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVEN 1682 + V V ++L++++ GQ+TY+ + S FV+ NL ++ KG ++V+V + Sbjct 2486 QSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDG 2545 Query 1683 DA--DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVD 1740 + + ++ +A+V+Y+Q + +PIL++D+ L++ ++ V+ MFD YV+TF S F+V Sbjct 2546 KSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVP 2605 Query 1741 KKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLE 1800 L++L+ATA++ + + + +VL TF+S AR++ +DSDV+TK + + + + +++E Sbjct 2606 MEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG-FVDSDVETKDVVECLKLSHQSDIE 2664 Query 1801 LTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 +T++SCNN + TY K +N+ + DLG I+ SA+H++++VAK ++ IW+V F LS + Sbjct 2665 VTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQ 2724 Query 1861 FQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 ++ +++ A K L +KLT V+V+TT ++LKGG Sbjct 2725 LRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 2763 Range 2: 1034 to 1162 Score:63.9 bits(223), Expect:1e-08, Method:Compositional matrix adjust., Identities:47/131(36%), Positives:80/131(61%), Gaps:2/131(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 +T NV + ++DI+ +K+VK+ VVVN+AN + HGGGVA A+ A+ + E+ D + + Sbjct 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 +G G+ V +G +L K L+VVGP+ + LL Y ++N+ + +++ L+SA Sbjct 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLSA 1151 Query 542 GIFSVPSDVSL 552 GIF+ + SL Sbjct 1152 GIFGADPIHSL 1162 Range 3: 822 to 927 Score:55.0 bits(189), Expect:7e-06, Method:Compositional matrix adjust., Identities:35/111(32%), Positives:65/111(58%), Gaps:5/111(4%) Query 3 RVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAI 62 +VTF ++ ++ K++++ +ELD ++ +LN C+ + V+ +++EF VV DA+ Sbjct 822 KVTFGDDTVIE--VQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAV 879 Query 63 EEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 L P EL + ++ L+ + +LFDE+GE LAS +YC+F +P Sbjct 880 IKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPP 927 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like protease; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 1567 to 2763 Score:399 bits(1502), Expect:4e-117, Method:Compositional matrix adjust., Identities:355/1237(29%), Positives:676/1237(54%), Gaps:90/1237(7%) Query 713 KVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSS 772 + ++ TVD +N+ + V ++ ++G+ +G + DG +VTK K + + GK F+ + N Sbjct 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPN--D 1624 Query 773 EDLKAVRSSFNF----DQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 + L+ +F++ D L Y + L + KW+ ++K A+NNC++ + L Sbjct 1625 DTLRV--EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLT 1682 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLT 888 LQ ++LKF+ Q+A R+G +A F +L+LA G+ +D R+ + +F + +L Sbjct 1683 LQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLD 1742 Query 889 GAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRFDV 946 + +++ CK CG +Q GV+AVM GTLS E++ G + C+CGK+ V+ + Sbjct 1743 SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQES 1802 Query 947 PFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQSYQLY--DASNVKKVTDVT 1002 PF++ S PA L G A+ + G+ + GHY H+ ++ LY D++ + K ++ Sbjct 1803 PFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET--LYCIDGALLTKSSEYK 1860 Query 1003 GNLSDCLYL-KNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIK-AQFK 1060 G ++D +Y ++ T+K+V TY LD+V E +P L +YY + Y+T++ I + Sbjct 1861 GPITDVFYKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQ 1918 Query 1061 TFEKVDGVYTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLY 1118 + ++ + NFK++ + I D LN G+ + E KVT P GDVV Y Sbjct 1919 PYP--NASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHY 1975 Query 1119 VKRYERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDV 1168 + +G + KP++W H + + N TY + + N FDVLK +D Sbjct 1976 TPSFKKGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDA 2033 Query 1169 DDGGDISESDAKESKEINIIKLSGVKK--------PFKVEDSVIVNDDTSEIKYVKSLSI 1220 ++ ++++ D K E +++ + ++K V + +I++ + +K ++ Sbjct 2034 QGMDNLACEDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGH 2092 Query 1221 VDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFNV 1279 D+ + ++ +N LS + ++ + G++ V S+P D + + +V Sbjct 2093 TDLMAAYVDNSSLTIKKPNELSRVLG---LKTLATHGLAAVNSVPWDTIANYAKPFLNKV 2149 Query 1280 VKAVRNKISACFN-----FIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVA----L 1330 V + N ++ C+N ++ +F LL+ ++ + + +++ ++ + V + Sbjct 2150 VSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKF 2209 Query 1331 AFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWI 1390 + +F +K + ++ +I I +WF ++ L + + + +G + Sbjct 2210 CLEASFNYLKSPNFSK---LINII--IWF-------LLLSVCLGSLIYSTAALGVL---- 2253 Query 1391 KSTFSLVTICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQYEAD- 1445 S +++ + C Y + N YC GSI+C CL+G+D LD Y +++ +Q Sbjct 2254 MSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS 2313 Query 1446 -RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRL 1504 ++ + + +V E +++Y L+T FY L +Q++ + ++ F+ ++ W ++L Sbjct 2314 FKWDLTAFG----LVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWL 2367 Query 1505 LVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIV 1564 +++L +M P +R YI++ASF + + HV GC+ + C+ CYKRNR+ RV C+TIV Sbjct 2368 IINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIV 2427 Query 1565 GGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVA 1624 G+ R + V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD + Sbjct 2428 NGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 2487 Query 1625 YHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA 1684 V V ++L++++ GQ+TY+ + S FV+ NL ++ KG ++V+V + + Sbjct 2488 SYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKS 2547 Query 1685 --DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKK 1742 + ++ +A+V+Y+Q + +PIL++D+ L++ ++ V+ MFD YV+TF S F+V Sbjct 2548 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 Query 1743 SLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELT 1802 L++L+ATA++ + + + +VL TF+S AR++ +DSDV+TK + + + + +++E+T Sbjct 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAARQG-FVDSDVETKDVVECLKLSHQSDIEVT 2666 Query 1803 DESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQ 1862 ++SCNN + TY K +N+ + DLG I+ SA+H++++VAK ++ IW+V F LS +++ Sbjct 2667 GDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 Query 1863 HKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 +++ A K L +KLT V+V+TT ++LKGG Sbjct 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 2763 Range 2: 1034 to 1162 Score:63.9 bits(223), Expect:1e-08, Method:Compositional matrix adjust., Identities:47/131(36%), Positives:80/131(61%), Gaps:2/131(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 +T NV + ++DI+ +K+VK+ VVVN+AN + HGGGVA A+ A+ + E+ D + + Sbjct 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 +G G+ V +G +L K L+VVGP+ + LL Y ++N+ + +++ L+SA Sbjct 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLSA 1151 Query 542 GIFSVPSDVSL 552 GIF+ + SL Sbjct 1152 GIFGADPIHSL 1162 Range 3: 822 to 927 Score:55.3 bits(190), Expect:6e-06, Method:Compositional matrix adjust., Identities:35/111(32%), Positives:65/111(58%), Gaps:5/111(4%) Query 3 RVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAI 62 +VTF ++ ++ K++++ +ELD ++ +LN C+ + V+ +++EF VV DA+ Sbjct 822 KVTFGDDTVIE--VQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAV 879 Query 63 EEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 L P EL + ++ L+ + +LFDE+GE LAS +YC+F +P Sbjct 880 IKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPP 927 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 1550 to 2746 Score:397 bits(1495), Expect:1e-116, Method:Compositional matrix adjust., Identities:359/1238(29%), Positives:678/1238(54%), Gaps:92/1238(7%) Query 713 KVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSS 772 + ++ TVD N+ ++V ++ ++G+ +G + DG +VTK K + + GK FF + S Sbjct 1550 TIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLP--SD 1607 Query 773 EDLKAVRSSFNF----DQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 + L++ +F++ D+ L Y + L + KW+ G ++K A+NNC+++ L Sbjct 1608 DTLRS--EAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLA 1665 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLT 888 LQ +++KF+ QEA R+G +A F +L+LA + G+ +D R+ + ++ + +L Sbjct 1666 LQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLE 1725 Query 889 GAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRFDV 946 +A +++ CK CG K TGV+AVM GTLS E+L G T+ C CG+ + V+ + Sbjct 1726 SAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQES 1785 Query 947 PFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQS-YQLYDASNVKKVTDVTG 1003 +F++ S P+ L +G AN + G + GHY HV ++ Y++ D++ + K+++ G Sbjct 1786 SFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRI-DGAYLTKMSEYKG 1844 Query 1004 NLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFE 1063 ++D +Y K++ T +Y LD+V E +P L +YY + YYT++ I T Sbjct 1845 PVTDVFY-KEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPI-DLVPTQP 1902 Query 1064 KVDGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKR 1121 ++ + NFKL + D LN GF + E VT P GDVV Y Sbjct 1903 LPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELSVTFFPDLNGDVVAIDYRHYSAS 1961 Query 1122 YERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDG 1171 + +G + KP+IW H + + N TY + + N F+VL V+D ++ Sbjct 1962 FKKGAKLLHKPIIW--HINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGM 2019 Query 1172 GDISESDAKESKEINIIKLSGVKK--------PFKVEDSVIVNDDTSEIKYVKSLSIVDV 1223 ++++ +++ + +++ + ++K + V ++VI++ +K + L+ D+ Sbjct 2020 DNLA-CESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDL 2078 Query 1224 YDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREI--KPVFNVVK 1281 + ++ +N LS+A+ + T+ ++ V+ + L ++ + ++ + Sbjct 2079 MAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTN 2138 Query 1282 AVRNKISACFN-FIKWLFVLLF----------GWIKISADNKVI-YTTEVASKL---TCK 1326 ++ + FN ++ ++ LLF ++I+ S + + +KL C Sbjct 2139 CIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCI 2198 Query 1327 --LVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVG 1384 + + F + F W ++ + C+ + +IY F+ + L+++G +P++ + Sbjct 2199 NYVKSPKFSKLFTIAMWLLLL-SICLGS--------LIYVTAAFGVL-LSNLG-IPSYCD 2247 Query 1385 KIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEA 1444 + + ++ ++ T+ ++C+GS+ C CL G+D LD+Y A++ +Q Sbjct 2248 GVRESYVNSSNVTTM-------------DFCEGSFLCSVCLNGLDSLDSYPALETIQ--V 2292 Query 1445 DRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVR 1503 ++ L + E +++Y L+T FY L++L +I Q++ ++ F+ ++ W ++ Sbjct 2293 TISSYKLDLTSLGLAAEWFLAYMLFTKFFY-LLGLSAIMQVFFGYFASHFISNS--WLMW 2349 Query 1504 LLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 +++S+ +M P +R YI++A + + H+ GC+ + C+ CYKRNR+ RV C+TI Sbjct 2350 FIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTI 2409 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V GM R + V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD Sbjct 2410 VNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQ 2469 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVEND 1683 + V V ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + Sbjct 2470 SSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 2529 Query 1684 A--DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDK 1741 + D + +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V Sbjct 2530 SKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 2589 Query 1742 KSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLEL 1801 L+AL+ATAHS + +G + VL TF+S AR++ +D+DVDTK + + + + ++LE+ Sbjct 2590 EKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEV 2648 Query 1802 TDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDF 1861 T++SCNN++ TY K +N+ + DLG I+ +A+H++++VAK VS IW+V + LS ++ Sbjct 2649 TGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQL 2708 Query 1862 QHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 + +++ A K + ++LT V+ +TT +SLKGG Sbjct 2709 RKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 Range 2: 1020 to 1162 Score:64.2 bits(224), Expect:1e-08, Method:Compositional matrix adjust., Identities:49/145(34%), Positives:88/145(60%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K +++ K+ V+VN+AN H+ HGGGVA A+ A+ +E+ D +K +G + G+ Sbjct 1020 DIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSC 1079 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K ++VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1080 LLSGHNLAKKCMHVVGPN--LNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQS 1137 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV + N+Q+ +D + Sbjct 1138 LKMCVETVRTQVYFAVNDQDLYDHV 1162 Range 3: 822 to 925 Score:61.3 bits(213), Expect:9e-08, Method:Compositional matrix adjust., Identities:35/109(32%), Positives:65/109(59%), Gaps:5/109(4%) Query 2 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 61 + VTF E+ ++ K +K+ +ELD + +LN C+V+ V+ ++ EF VV +A Sbjct 822 KGVTFGEDTVLE--VQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 879 Query 62 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAF 110 + L P +L ++++ L+ +++LFD+AGEE L+S++YC+F Sbjct 880 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSF 925 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 1550 to 2746 Score:397 bits(1495), Expect:2e-116, Method:Compositional matrix adjust., Identities:359/1238(29%), Positives:678/1238(54%), Gaps:92/1238(7%) Query 713 KVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSS 772 + ++ TVD N+ ++V ++ ++G+ +G + DG +VTK K + + GK FF + S Sbjct 1550 TIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLP--SD 1607 Query 773 EDLKAVRSSFNF----DQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 + L++ +F++ D+ L Y + L + KW+ G ++K A+NNC+++ L Sbjct 1608 DTLRS--EAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLA 1665 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLT 888 LQ +++KF+ QEA R+G +A F +L+LA + G+ +D R+ + ++ + +L Sbjct 1666 LQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLE 1725 Query 889 GAICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHC-VRFDV 946 +A +++ CK CG K TGV+AVM GTLS E+L G T+ C CG+ + V+ + Sbjct 1726 SAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQES 1785 Query 947 PFLICSNTPASVKLPKGV-GSANIFKGD-KVGHYVHVKCEQS-YQLYDASNVKKVTDVTG 1003 +F++ S P+ L +G AN + G + GHY HV ++ Y++ D++ + K+++ G Sbjct 1786 SFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRI-DGAYLTKMSEYKG 1844 Query 1004 NLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFE 1063 ++D +Y K++ T +Y LD+V E +P L +YY + YYT++ I T Sbjct 1845 PVTDVFY-KEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPI-DLVPTQP 1902 Query 1064 KVDGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKR 1121 ++ + NFKL + D LN GF + E VT P GDVV Y Sbjct 1903 LPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELSVTFFPDLNGDVVAIDYRHYSAS 1961 Query 1122 YERGCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDG 1171 + +G + KP+IW H + + N TY + + N F+VL V+D ++ Sbjct 1962 FKKGAKLLHKPIIW--HINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGM 2019 Query 1172 GDISESDAKESKEINIIKLSGVKK--------PFKVEDSVIVNDDTSEIKYVKSLSIVDV 1223 ++++ +++ + +++ + ++K + V ++VI++ +K + L+ D+ Sbjct 2020 DNLA-CESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDL 2078 Query 1224 YDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREI--KPVFNVVK 1281 + ++ +N LS+A+ + T+ ++ V+ + L ++ + ++ + Sbjct 2079 MAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTN 2138 Query 1282 AVRNKISACFN-FIKWLFVLLF----------GWIKISADNKVI-YTTEVASKL---TCK 1326 ++ + FN ++ ++ LLF ++I+ S + + +KL C Sbjct 2139 CIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCI 2198 Query 1327 --LVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVG 1384 + + F + F W ++ + C+ + +IY F+ + L+++G +P++ + Sbjct 2199 NYVKSPKFSKLFTIAMWLLLL-SICLGS--------LIYVTAAFGVL-LSNLG-IPSYCD 2247 Query 1385 KIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEA 1444 + + ++ ++ T+ ++C+GS+ C CL G+D LD+Y A++ +Q Sbjct 2248 GVRESYVNSSNVTTM-------------DFCEGSFLCSVCLNGLDSLDSYPALETIQ--V 2292 Query 1445 DRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVR 1503 ++ L + E +++Y L+T FY L++L +I Q++ ++ F+ ++ W ++ Sbjct 2293 TISSYKLDLTSLGLAAEWFLAYMLFTKFFY-LLGLSAIMQVFFGYFASHFISNS--WLMW 2349 Query 1504 LLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 +++S+ +M P +R YI++A + + H+ GC+ + C+ CYKRNR+ RV C+TI Sbjct 2350 FIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTI 2409 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V GM R + V ANGG GFC H+WNC++CD++ +G+TFI+ E A DLS ++KRPI+PTD Sbjct 2410 VNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQ 2469 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVEND 1683 + V V ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + Sbjct 2470 SSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 2529 Query 1684 A--DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDK 1741 + D + +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V Sbjct 2530 SKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 2589 Query 1742 KSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLEL 1801 L+AL+ATAHS + +G + VL TF+S AR++ +D+DVDTK + + + + ++LE+ Sbjct 2590 EKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEV 2648 Query 1802 TDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDF 1861 T++SCNN++ TY K +N+ + DLG I+ +A+H++++VAK VS IW+V + LS ++ Sbjct 2649 TGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQL 2708 Query 1862 QHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 + +++ A K + ++LT V+ +TT +SLKGG Sbjct 2709 RKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 Range 2: 1020 to 1162 Score:64.7 bits(226), Expect:8e-09, Method:Compositional matrix adjust., Identities:49/145(34%), Positives:88/145(60%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K +++ K+ V+VN+AN H+ HGGGVA A+ A+ +E+ D +K +G + G+ Sbjct 1020 DIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSC 1079 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K ++VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1080 LLSGHNLAKKCMHVVGPN--LNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQS 1137 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV + N+Q+ +D + Sbjct 1138 LKMCVETVRTQVYFAVNDQDLYDHV 1162 Range 3: 822 to 925 Score:61.3 bits(213), Expect:9e-08, Method:Compositional matrix adjust., Identities:35/109(32%), Positives:65/109(59%), Gaps:5/109(4%) Query 2 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 61 + VTF E+ ++ K +K+ +ELD + +LN C+V+ V+ ++ EF VV +A Sbjct 822 KGVTFGEDTVLE--VQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 879 Query 62 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAF 110 + L P +L ++++ L+ +++LFD+AGEE L+S++YC+F Sbjct 880 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSF 925 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 1392 to 2733 Score:362 bits(1360), Expect:2e-104, Method:Compositional matrix adjust., Identities:373/1374(27%), Positives:710/1374(51%), Gaps:137/1374(9%) Query 627 QDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQ 686 Q+ + + +D+ L+ + + + ++W++V+ ++++R K ++ ++ IC + Sbjct 1392 QEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLH-WSDQTICYK 1450 Query 687 DKVFGYV--QQGSFNKATVAQIKALFLD-------KVDILLTVDGVNFTNRFVPVGESFG 737 D VF YV + +F T++ +A +LD +++L+TVDGVNF + +++ Sbjct 1451 DSVF-YVVKNSTAFPFETLSACRA-YLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYR 1508 Query 738 KSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLA-YYNML 796 LG VF +G +++ D + +G ++ DNL++++ KA++ + + +L +Y++ Sbjct 1509 SQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLK 1568 Query 797 VNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPAR 855 KW++V +K ++K ++NNC++N + L+ L ++KF I Q+A + ++G ++ Sbjct 1569 AAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTD 1628 Query 856 FVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIA----CK-CGVKQEQRTGV 910 F++L++A G FG P D+ +L+ V+++ +L C + C+ CG+K+ G+ Sbjct 1629 FIALIMAYGNCTFGAPDDASRLLHTVLAKAELC---CSARMVWREWCNVCGIKDVVLQGL 1685 Query 911 DAVMHFGTLSREDLEIGYTVDCSCG-KKLIHCVRFDVPFLICSNTPASVKLPKGVGSA-- 967 A G + EDL T C CG + + V P L+ S TP + + ++ Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 968 --NIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1022 N+F+G VGHYVH + + L +D++ V K +D +++D L+ K + + Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLF-PGQKYSSDCNV 1804 Query 1023 TTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLI------- 1075 Y LD+ + E +PDLS +Y +GKY+T + + ++VYTN L+ Sbjct 1805 VRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPG 1864 Query 1076 GHTICDILNAKLGFDSSKEFVE-YKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVI 1134 G++I +N LGFDSSK Y + P GDV+LA D Y Y G + GKP++ Sbjct 1865 GDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPIL 1924 Query 1135 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKESKEI 1185 W++ +L FNR+ L + ENKF L V+ + A + +E+ Sbjct 1925 WVNKASYD-TNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPVEPPTVDVVALQ-QEM 1982 Query 1186 NIIKLSGVKKPFKVEDSVIVNDDTSE--IKYVKSLSIVDVYDMWLTGCRY--VVRTANAL 1241 I+K G++KPF ++ +V DD++ + Y+ + +Y + +Y +V N L Sbjct 1983 TIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLY----VDPKYQVIVLKDNVL 2038 Query 1242 SMAVNVPTIRKFIKFGMTLVSIPIDL-----LNLRE---------------------IKP 1275 S + + T+ ++ +V+ + L L +R IK+ Sbjct 2039 SSMLRLHTVESG---DINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKS 2095 Query 1276 VFNVVKAVRNKISACFNFIKWLFVLLFGW----------IKISADNKVIYTTEVASKLTC 1325 V + + +++CF+F+K LF+L ++ +K+SA + T K C Sbjct 2096 VVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCC 2155 Query 1326 KLVALAFKNAFLTFKWSVVAR-------GACIIATIFLLWFNFIYANVIFSDFYLPKIGF 1378 + + W R ++++++ L +++ +V+ SD + Sbjct 2156 TAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHL---YVFNQVLSSDVMFEDAQG 2212 Query 1379 LPTFVGKIAQWIKSTFSLVTICDLYSI--QDVGFK-NQYCNGSIA-CQFCLAGFDMLDNY 1434 L F + ++ +++ + CD + + +F +C A C+ CL + D + +Y Sbjct 2213 LKKFYKEV----RAYLGISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 1435 KAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTA---WFYPLFAL----ISIQILTT 1487 A+ +VQ ++ +V + L + +E ++Y LYT+ W+ +L I+ Sbjct 2269 PALKMVQ--THLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVD 2326 Query 1488 WLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCL 1547 W + + +S+ W L +P ++R Y ++A + L +++HV GC +CL Sbjct 2327 WRSYNYAVSSAFW-------LFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACL 2379 Query 1548 FCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 1607 +CYKRNR RV ST+V G R + + ANGG +FC +H+WNC+DCD+ GNTFI E A Sbjct 2380 LCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVA 2439 Query 1608 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHS 1667 DL+ L+RPI++TD + V V +++ Y RDGQ Y+ F + +L Sbjct 2440 NDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFK 2499 Query 1668 KV----KGVPNMHVVVVENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSV 1721 V G+P+ + ++ ++ + L + V+Y+Q L ++IL+VD +L+T+ ++ + Sbjct 2500 EVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEI 2559 Query 1722 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 1781 + MFD +V++F+S+++V + L+ LI+TA+ ++++G ++ VL TF+ AR + +++SD Sbjct 2560 ATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESD 2619 Query 1782 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 1841 V+T+ + DSV A ++++T+ES NN VP+Y+K D++ ++DLG LI+ +A V+ V + Sbjct 2620 VETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLR 2679 Query 1842 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 + +CIW+ A+ +LS ++++++ AC K L ++LT +K AN ++L+ F+ Sbjct 2680 NSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 1110 to 1277 Score:90.5 bits(324), Expect:1e-16, Method:Compositional matrix adjust., Identities:69/175(39%), Positives:108/175(61%), Gaps:7/175(4%) Query 408 SMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAA 467 +++ FE ++ C+T +V GD I+V+K V+VN+AN H+ HGGG+A AI A+ Sbjct 1110 PLSNFE-HKVITECVT----IVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAAS 1164 Query 468 GQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKH 527 KE+ + + +KG GD + G L K +L+VVGPDAR +KQ +LL + YK Sbjct 1165 KGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDAR--AKQDVSLLSKCYKA 1222 Query 528 LNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQIT 582 +N Y VVT L+SAGIF+V + VS+ YL+ A +V++V N+Q+ + ++ +I Sbjct 1223 MNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVDIP 1277 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 1392 to 2733 Score:362 bits(1359), Expect:2e-104, Method:Compositional matrix adjust., Identities:373/1374(27%), Positives:710/1374(51%), Gaps:137/1374(9%) Query 627 QDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQ 686 Q+ + + +D+ L+ + + + ++W++V+ ++++R K ++ ++ IC + Sbjct 1392 QEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLH-WSDQTICYK 1450 Query 687 DKVFGYV--QQGSFNKATVAQIKALFLD-------KVDILLTVDGVNFTNRFVPVGESFG 737 D VF YV + +F T++ +A +LD +++L+TVDGVNF + +++ Sbjct 1451 DSVF-YVVKNSTAFPFETLSACRA-YLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYR 1508 Query 738 KSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLA-YYNML 796 LG VF +G +++ D + +G ++ DNL++++ KA++ + + +L +Y++ Sbjct 1509 SQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLK 1568 Query 797 VNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPAR 855 KW++V +K ++K ++NNC++N + L+ L ++KF I Q+A + ++G ++ Sbjct 1569 AAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTD 1628 Query 856 FVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIA----CK-CGVKQEQRTGV 910 F++L++A G FG P D+ +L+ V+++ +L C + C+ CG+K+ G+ Sbjct 1629 FIALIMAYGNCTFGAPDDASRLLHTVLAKAELC---CSARMVWREWCNVCGIKDVVLQGL 1685 Query 911 DAVMHFGTLSREDLEIGYTVDCSCG-KKLIHCVRFDVPFLICSNTPASVKLPKGVGSA-- 967 A G + EDL T C CG + + V P L+ S TP + + ++ Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 968 --NIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1022 N+F+G VGHYVH + + L +D++ V K +D +++D L+ K + + Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLF-PGQKYSSDCNV 1804 Query 1023 TTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLI------- 1075 Y LD+ + E +PDLS +Y +GKY+T + + ++VYTN L+ Sbjct 1805 VRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPG 1864 Query 1076 GHTICDILNAKLGFDSSKEFVE-YKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVI 1134 G++I +N LGFDSSK Y + P GDV+LA D Y Y G + GKP++ Sbjct 1865 GDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPIL 1924 Query 1135 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKESKEI 1185 W++ +L FNR+ L + ENKF L V+ + A + +E+ Sbjct 1925 WVNKASYD-TNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPVEPPTVDVVALQ-QEM 1982 Query 1186 NIIKLSGVKKPFKVEDSVIVNDDTSE--IKYVKSLSIVDVYDMWLTGCRY--VVRTANAL 1241 I+K G++KPF ++ +V DD++ + Y+ + +Y + +Y +V N L Sbjct 1983 TIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLY----VDPKYQVIVLKDNVL 2038 Query 1242 SMAVNVPTIRKFIKFGMTLVSIPIDL-----LNLRE---------------------IKP 1275 S + + T+ ++ +V+ + L L +R IK+ Sbjct 2039 SSMLRLHTVESG---DINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKS 2095 Query 1276 VFNVVKAVRNKISACFNFIKWLFVLLFGW----------IKISADNKVIYTTEVASKLTC 1325 V + + +++CF+F+K LF+L ++ +K+SA + T K C Sbjct 2096 VVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCC 2155 Query 1326 KLVALAFKNAFLTFKWSVVAR-------GACIIATIFLLWFNFIYANVIFSDFYLPKIGF 1378 + + W R ++++++ L +++ +V+ SD + Sbjct 2156 TAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHL---YVFNQVLSSDVMFEDAQG 2212 Query 1379 LPTFVGKIAQWIKSTFSLVTICD--LYSIQDVGFK-NQYCNGSIA-CQFCLAGFDMLDNY 1434 L F + ++ +++ + CD + + +F +C A C+ CL + D + +Y Sbjct 2213 LKKFYKEV----RAYLGISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 1435 KAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTA---WFYPLFAL----ISIQILTT 1487 A+ +VQ ++ +V + L + +E ++Y LYT+ W+ +L I+ Sbjct 2269 PALKMVQ--THLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVD 2326 Query 1488 WLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCL 1547 W + + +S+ W L +P ++R Y ++A + L +++HV GC +CL Sbjct 2327 WRSYNYAVSSAFW-------LFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACL 2379 Query 1548 FCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 1607 +CYKRNR RV ST+V G R + + ANGG +FC +H+WNC+DCD+ GNTFI E A Sbjct 2380 LCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVA 2439 Query 1608 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHS 1667 DL+ L+RPI++TD + V V +++ Y RDGQ Y+ F + +L Sbjct 2440 NDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFK 2499 Query 1668 KV----KGVPNMHVVVVENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSV 1721 V G+P+ + ++ ++ + L + V+Y+Q L ++IL+VD +L+T+ ++ + Sbjct 2500 EVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEI 2559 Query 1722 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 1781 + MFD +V++F+S+++V + L+ LI+TA+ ++++G ++ VL TF+ AR + +++SD Sbjct 2560 ATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESD 2619 Query 1782 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 1841 V+T+ + DSV A ++++T+ES NN VP+Y+K D++ ++DLG LI+ +A V+ V + Sbjct 2620 VETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLR 2679 Query 1842 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 + +CIW+ A+ +LS ++++++ AC K L ++LT +K AN ++L+ F+ Sbjct 2680 NSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 1110 to 1331 Score:90.5 bits(324), Expect:1e-16, Method:Compositional matrix adjust., Identities:77/230(33%), Positives:132/230(57%), Gaps:16/230(6%) Query 408 SMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAA 467 +++ FE ++ C+T +V GD I+V+K V+VN+AN H+ HGGG+A AI A+ Sbjct 1110 PLSNFE-HKVITECVT----IVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAAS 1164 Query 468 GQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKH 527 KE+ + + +KG GD + G L K +L+VVGPDAR +KQ +LL + YK Sbjct 1165 KGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDAR--AKQDVSLLSKCYKA 1222 Query 528 LNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQIT----- 582 +N Y VVT L+SAGIF+V + VS+ YL+ A +V++V N+Q+ + ++ +I Sbjct 1223 MNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVDIPQSLTF 1282 Query 583 ---AVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDV 629 ++ G+ + A +F V ++ K++ +++V + F +++V Sbjct 1283 SYDGLRGAIRKAKDYGFTVFVCTD-NSANTKVLRNKGVDYTKKFLTVDGV 1331 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 1426 to 2610 Score:333 bits(1251), Expect:1e-94, Method:Compositional matrix adjust., Identities:344/1228(28%), Positives:653/1228(53%), Gaps:85/1228(6%) Query 714 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 773 + +L TVDG+N++ +V+ ++S+ +G VFCDG + ++ + G +++ DN+SS Sbjct 1426 IKVLTTVDGINYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSA 1485 Query 774 DLKAVRSSFNFDQKELLA-YYNMLVNCSKWQ-VVFNGKYFTFKQANNNCFVNVSCLMLQS 831 ++ A+R + D+ +++A ++ W V +G+ + + Q ++NC++NV+ +LQ Sbjct 1486 EVTAIREYYGVDDSNIIARAMSIRKTVQTWPYTVVDGRVL-LAQRDSNCYLNVAISLLQD 1544 Query 832 LNLKFKIVQWQ-EAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG- 889 +++ F W A +++G P +++A G G + D++ L V+++ +T+ Sbjct 1545 IDVSFS-TPWVCRAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTVTAR 1603 Query 890 ----AICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFD 945 ++C+ CGV Q TG DA +G++ +DL +V C CG+ I+ V + Sbjct 1604 RVMQTVCE-----HCGVSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQ 1658 Query 946 -VPFLICSNTPASVKLPKGV--GSANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDV 1001 P L+ S TP+ V L + +A +F+G GHY+ +YDA+ ++ +D+ Sbjct 1659 KSPWLLMSCTPTQVPLDTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDL 1718 Query 1002 TGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKT 1061 +D LY T S + TYYLD+VK+ +PD+S+Y G+ Y+T I + Sbjct 1719 KLPATDILY-GPTSFTSDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV--A 1775 Query 1062 FEKVDGVYTNFKLIGHTICDILNA-KLGFDSSKEFVEYKVTEWPTATGDVV-LATDDLYV 1119 K+ Y F L + ++ ++ + +++++K +T P +GDVV ++ D++ Sbjct 1776 APKLVTSYDGFYLSSCQNPQLAESFNKAINATKTGPMKLLTMYPNVAGDVVAISDDNVVA 1835 Query 1120 KRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDA 1179 Y G + GKPV+ +++ ++ + + ++ ++ N +DVL VD + + SE Sbjct 1836 HPY--GSLHMGKPVLFVTRPNTWKKLVPLLSTVVVNTPNTYDVLAVDPLPVNNETSEEPI 1893 Query 1180 KESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR-YVVRTA 1238 I L G+K ++++ V ++ +++ +K +++ D+ + G + +V+ A Sbjct 1894 SVKAPIP---LYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1239 NALSM---------AVNVPTIRKFIKFGMT----LVSIPIDLLNLREIKPVFNVVKAVRN 1285 + LS +++V + K + ++ + + LL ++V + VR+ Sbjct 1951 SHLSKVLGLRVSDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRS 2010 Query 1286 KISA--CFNFIKWLFVLLFG--WIKISADNKVIYTTEVASKLTCKLVA--LAF-KNAFLT 1338 ++ C ++ LF LF W+ + V + +A + C + + L + ++ Sbjct 2011 TNPGSKCVGLLC-LFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSRCGN 2069 Query 1339 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVT 1398 + WS + + ++ ++ +WF + + + + + L+ + P++V ++ K +++V Sbjct 2070 ISWSRLLK---LLRYMLYIWF--VWTCLTICGVWLSE-PYAPSLVTRF----KYFLGIVM 2119 Query 1399 ICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKI 1458 CD +++ G G + ++C+AG D LD Y A+ + Q + +YT +L + Sbjct 2120 PCDYVLVNETG------TGWLH-HLCMAGMDSLD-YPALRMQQHRYGSP--YNYTYIL-M 2168 Query 1459 VIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTL--HWSVRLLVSLANMLPAHV 1516 ++E + +Y LYT P +++++I + L L++ L W V +L + ++P Sbjct 2169 LLEAFFAYLLYT----PALPIVGILAVLH-LIVLYLPIPLGNSWLVVFLYYIIRLVPFTS 2223 Query 1517 FMRFYIIIASFIKL-FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 1575 +R YI+IA F+ L + F HV YGC++ +CL CYK+N + R+ CST+V G+ R + V A Sbjct 2224 MLRMYIVIA-FLWLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNA 2282 Query 1576 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 1635 NGGT FC+KH+WNC+ CD+Y ++TFI + ALDLS ++KRPI TD AY VT V Sbjct 2283 NGGTHFCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRN 2342 Query 1636 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKG-VPNMHVVVVENDA--DKANFLNA 1692 Y+ ++E DGQR+Y+ F + S+L S +KG P +V+V + + A Sbjct 2343 GYVYCYFESDGQRSYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTA 2402 Query 1693 AVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAH 1752 A++YAQ +PIL+VDK ++ +++++ +MF+ Y + +L + + ++ L +TA Sbjct 2403 AIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTAL 2462 Query 1753 SSIKQGTQICKVLDTFLSCARKSC-SIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 I G + VL F++ +R ++SDVDT+ L + G E T +S NNLVP Sbjct 2463 QQISSGMTVESVLKVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVP 2522 Query 1812 TYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCK 1871 TY+K D + + ++G ++ +AK V++N+AK A+V+ IW F +LS +++LK A K Sbjct 2523 TYIKQDTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARK 2582 Query 1872 TGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 TGL+L +T + A+V+ + TPF + GG Sbjct 2583 TGLNLLVTTSSLKADVPCMVTPFKIIGG 2610 Range 2: 944 to 1068 Score:62.4 bits(217), Expect:4e-08, Method:Compositional matrix adjust., Identities:47/127(37%), Positives:80/127(62%), Gaps:4/127(3%) Query 428 FVK-GDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKG-VC 485 ++K +DI++ ++ V+VN+AN ++ HGGGVA A+ A+ + KE+++ +K++G + Sbjct 944 YIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQ 1003 Query 486 ATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFS 545 + G+ +S+ G +L+VVGPD R Q ALL+ VY +D V+T L+SAGIF+ Sbjct 1004 PGGHVLLSSHGLASHGILHVVGPDKRLG--QDLALLDAVYAAYTGFDSVLTPLVSAGIFG 1061 Query 546 VPSDVSL 552 + SL Sbjct 1062 FTVEESL 1068 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6T6.1 Length: 4248 Range 1: 1426 to 2610 Score:333 bits(1250), Expect:1e-94, Method:Compositional matrix adjust., Identities:344/1228(28%), Positives:655/1228(53%), Gaps:85/1228(6%) Query 714 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 773 + +L TVDG+N++ +V+ ++S+ +G VFCDG + ++ + G +++ DN+SS Sbjct 1426 IKVLTTVDGINYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSA 1485 Query 774 DLKAVRSSFNFDQKELLA-YYNMLVNCSKWQ-VVFNGKYFTFKQANNNCFVNVSCLMLQS 831 ++ A+R + D+ +++A ++ W V +G+ + + Q ++NC++NV+ +LQ Sbjct 1486 EVTAIREYYGVDDSNIIARAMSIRKTVQTWPYTVVDGRVL-LAQRDSNCYLNVAISLLQD 1544 Query 832 LNLKFKIVQWQ-EAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG- 889 +++ F W A +++G P +++A G G + D++ L V+++ +T+ Sbjct 1545 IDVSFS-TPWVCRAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTVTAR 1603 Query 890 ----AICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFD 945 ++C+ CGV Q TG DA +G++ +DL +V C CG+ I+ V + Sbjct 1604 RVMQTVCE-----HCGVSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQ 1658 Query 946 -VPFLICSNTPASVKLPKGV--GSANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDV 1001 P L+ S TP+ V L + +A +F+G GHY+ +YDA+ ++ +D+ Sbjct 1659 KSPWLLMSCTPTQVPLDTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDL 1718 Query 1002 TGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKT 1061 +D LY T S + TYYLD+VK+ +PD+S+Y G+ Y+T I + Sbjct 1719 KLPATDILY-GPTSFTSDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV--A 1775 Query 1062 FEKVDGVYTNFKLIGHTICDILNA-KLGFDSSKEFVEYKVTEWPTATGDVV-LATDDLYV 1119 K+ Y F L + ++ ++ + +++++K +T P +GDVV ++ D++ Sbjct 1776 APKLVTSYDGFYLSSCQNPQLAESFNKAINATKTGPMKLLTMYPNVAGDVVAISDDNVVA 1835 Query 1120 KRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDA 1179 Y G + GKPV+ +++ ++ + + ++ ++ N +DVL VD + + SE Sbjct 1836 HPY--GSLHMGKPVLFVTRPNTWKKLVPLLSTVVVNTPNTYDVLAVDPLPVNNETSEEPI 1893 Query 1180 KESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCR-YVVRTA 1238 I L G+K ++++ V ++ +++ +K +++ D+ + G + +V+ A Sbjct 1894 SVKAPIP---LYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1239 NALSM---------AVNVPTIRKFIKFGMT----LVSIPIDLLNLREIKPVFNVVKAVRN 1285 + LS +++V + K + ++ + + LL ++V + VR+ Sbjct 1951 SHLSKVLGLRVSDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRS 2010 Query 1286 KISA--CFNFIKWLFVLLFG--WIKISADNKVIYTTEVASKLTCKLVA--LAF-KNAFLT 1338 ++ C ++ LF LF W+ + V + +A + C + + L + ++ Sbjct 2011 TNPGSKCVGLLC-LFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSRCGN 2069 Query 1339 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVT 1398 + WS + + ++ ++ +WF + + + + + L+ + P++V ++ K +++V Sbjct 2070 ISWSRLLK---LLRYMLYIWF--VWTCLTICGVWLSE-PYAPSLVTRF----KYFLGIVM 2119 Query 1399 ICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKI 1458 CD +++ G G + ++C+AG D LD Y A+ + Q + ++ +YT +L + Sbjct 2120 PCDYVLVNETG------TGWLH-HLCMAGMDSLD-YPALRMQQHRYGS-PY-NYTYIL-M 2168 Query 1459 VIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTL--HWSVRLLVSLANMLPAHV 1516 ++E + +Y LYT P +++++I + L L++ L W V +L + ++P Sbjct 2169 LLEAFFAYLLYT----PALPIVGILAVLH-LIVLYLPIPLGNSWLVVFLYYIIRLVPFTS 2223 Query 1517 FMRFYIIIASFIKL-FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 1575 +R YI+IA F+ L + F HV YGC++ +CL CYK+N + R+ CST+V G+ R + V A Sbjct 2224 MLRMYIVIA-FLWLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNA 2282 Query 1576 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 1635 NGGT FC+KH+WNC+ CD+Y ++TFI + ALDLS ++KRPI TD AY VT V Sbjct 2283 NGGTHFCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRN 2342 Query 1636 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKG-VPNMHVVVVENDA--DKANFLNA 1692 Y+ ++E DGQR+Y+ F + S+L S +KG P +V+V + + A Sbjct 2343 GYVYCYFESDGQRSYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTA 2402 Query 1693 AVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAH 1752 A++YAQ +PIL+VDK ++ +++++ +MF+ Y + +L + + ++ L +TA Sbjct 2403 AIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTAL 2462 Query 1753 SSIKQGTQICKVLDTFLSCARKSC-SIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 I G + VL F++ +R ++SDVDT+ L + G E T +S NNLVP Sbjct 2463 QQISSGMTVESVLKVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVP 2522 Query 1812 TYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCK 1871 TY+K D + + ++G ++ +AK V++N+AK A+V+ IW F +LS +++LK A K Sbjct 2523 TYIKQDTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARK 2582 Query 1872 TGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 TGL+L +T + A+V+ + TPF + GG Sbjct 2583 TGLNLLVTTSSLKADVPCMVTPFKIIGG 2610 Range 2: 944 to 1068 Score:62.6 bits(218), Expect:3e-08, Method:Compositional matrix adjust., Identities:47/127(37%), Positives:80/127(62%), Gaps:4/127(3%) Query 428 FVK-GDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKG-VC 485 ++K +DI++ ++ V+VN+AN ++ HGGGVA A+ A+ + KE+++ +K++G + Sbjct 944 YIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQ 1003 Query 486 ATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFS 545 + G+ +S+ G +L+VVGPD R Q ALL+ VY +D V+T L+SAGIF+ Sbjct 1004 PGGHVLLSSHGLASHGILHVVGPDKRLG--QDLALLDAVYAAYTGFDSVLTPLVSAGIFG 1061 Query 546 VPSDVSL 552 + SL Sbjct 1062 FTVEESL 1068 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 2232 to 2740 Score:292 bits(1092), Expect:1e-80, Method:Compositional matrix adjust., Identities:189/515(37%), Positives:328/515(63%), Gaps:13/515(2%) Query 1392 STFSLVTIC----DLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRR 1447 S F+ + C +LY ++C+GS++C +CL+G+D LD+Y A++ +Q Sbjct 2232 SNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ--VTIS 2289 Query 1448 AFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVRLLV 1506 ++ +L + E +++Y L+T FY L++L +I Q++ ++ F+ ++ W +++++ Sbjct 2290 SYKLDLTILGLAAEWVLAYMLFTKFFY-LLGLSAIMQVFFGYFASHFISNS--WLMWFII 2346 Query 1507 SLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGG 1566 S+ +M P +R YI++ASF + + H+ GC+ + C+ CYKRNR+ RV C+TIV G Sbjct 2347 SIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2406 Query 1567 MIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYH 1626 M R + V ANGG GFC H+WNC++CD++ G+TFI+ E A DLS ++KRPI+PTD + Sbjct 2407 MKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSY 2466 Query 1627 TVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA-- 1684 V V ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + + Sbjct 2467 IVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2526 Query 1685 DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSL 1744 D + +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V L Sbjct 2527 DESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2586 Query 1745 NALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDE 1804 +AL+ATAHS + +G + VL TF+S AR++ +D+DVDTK + + + + ++LE+T++ Sbjct 2587 KALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGD 2645 Query 1805 SCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHK 1864 SCNN++ TY K +N+ + DLG I+ +A+H++++VAK VS IW+V + LS +++ + Sbjct 2646 SCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQ 2705 Query 1865 LKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 ++ A K + ++LT V+V+TT +SLKGG Sbjct 2706 IRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2740 Range 2: 1022 to 1164 Score:60.5 bits(210), Expect:1e-07, Method:Compositional matrix adjust., Identities:48/145(33%), Positives:86/145(59%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K ++ ++ V+VN+AN H+ HGGGVA A+ A+ KE+ D +K +G + G+ Sbjct 1022 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 1081 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K L+VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1082 LLSGHNLAKKCLHVVGPN--LNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1139 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV + N++ ++ + Sbjct 1140 LQVCVQTVRTQVYIAVNDKALYEQV 1164 Range 3: 838 to 928 Score:60.5 bits(210), Expect:1e-07, Method:Compositional matrix adjust., Identities:30/94(32%), Positives:59/94(62%), Gaps:3/94(3%) Query 20 KTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 79 K +++ +ELD + +LN C+V+ V+ ++ EF VV +A+ L P +L +++ Sbjct 838 KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLL---TNM 894 Query 80 SAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 + L+ +++LFD+AGEE ++S++YC+F +P Sbjct 895 GIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPP 928 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6U8.1 Length: 4382 Range 1: 2232 to 2740 Score:291 bits(1091), Expect:1e-80, Method:Compositional matrix adjust., Identities:189/515(37%), Positives:328/515(63%), Gaps:13/515(2%) Query 1392 STFSLVTIC----DLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRR 1447 S F+ + C +LY ++C+GS++C +CL+G+D LD+Y A++ +Q Sbjct 2232 SNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ--VTIS 2289 Query 1448 AFVDYTGVLKIVIELIVSYALYTAWFYPLFALISI-QILTTWLPELFMLSTLHWSVRLLV 1506 ++ +L + E +++Y L+T FY L++L +I Q++ ++ F+ ++ W +++++ Sbjct 2290 SYKLDLTILGLAAEWVLAYMLFTKFFY-LLGLSAIMQVFFGYFASHFISNS--WLMWFII 2346 Query 1507 SLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGG 1566 S+ +M P +R YI++ASF + + H+ GC+ + C+ CYKRNR+ RV C+TIV G Sbjct 2347 SIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2406 Query 1567 MIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYH 1626 M R + V ANGG GFC H+WNC++CD++ G+TFI+ E A DLS ++KRPI+PTD + Sbjct 2407 MKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSY 2466 Query 1627 TVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA-- 1684 V V ++L++++ GQ+TY+ S FV+ NL ++ KG ++V+V + + Sbjct 2467 IVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2526 Query 1685 DKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSL 1744 D + +A+V+Y+Q + +PIL++D+ L++ +T V+ MFD YVDTF + F V L Sbjct 2527 DESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2586 Query 1745 NALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDE 1804 +AL+ATAHS + +G + VL TF+S AR++ +D+DVDTK + + + + ++LE+T++ Sbjct 2587 KALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGD 2645 Query 1805 SCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHK 1864 SCNN++ TY K +N+ + DLG I+ +A+H++++VAK VS IW+V + LS +++ + Sbjct 2646 SCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQ 2705 Query 1865 LKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 ++ A K + ++LT V+V+TT +SLKGG Sbjct 2706 IRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2740 Range 2: 1022 to 1164 Score:60.3 bits(209), Expect:2e-07, Method:Compositional matrix adjust., Identities:48/145(33%), Positives:86/145(59%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+K ++ ++ V+VN+AN H+ HGGGVA A+ A+ KE+ D +K +G + G+ Sbjct 1022 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 1081 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K L+VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1082 LLSGHNLAKKCLHVVGPN--LNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1139 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV + N++ ++ + Sbjct 1140 LQVCVQTVRTQVYIAVNDKALYEQV 1164 Range 3: 838 to 928 Score:60.3 bits(209), Expect:2e-07, Method:Compositional matrix adjust., Identities:30/94(32%), Positives:59/94(62%), Gaps:3/94(3%) Query 20 KTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 79 K +++ +ELD + +LN C+V+ V+ ++ EF VV +A+ L P +L +++ Sbjct 838 KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLL---TNM 894 Query 80 SAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP 113 + L+ +++LFD+AGEE ++S++YC+F +P Sbjct 895 GIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPP 928 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 2255 to 2738 Score:287 bits(1074), Expect:4e-79, Method:Compositional matrix adjust., Identities:182/490(37%), Positives:319/490(65%), Gaps:9/490(1%) Query 1413 QYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAW 1472 ++C+GS++C CL+G+D LD+Y A++ +Q ++ +L + E + +Y L+T Sbjct 2255 DFCEGSFPCSVCLSGLDSLDSYPALETIQ--VTISSYKLDLTILGLAAEWFFAYMLFTKF 2312 Query 1473 FYPLFALISI-QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLF 1531 FY L++L +I Q++ ++ F+ ++ W +++++S+ +M P +R YI++ASF + Sbjct 2313 FY-LLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYIW 2369 Query 1532 ILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCID 1591 + H+ GC+ + C+ CYKRNR+ RV C+TIV GM R + V ANGG GFC H+WNC++ Sbjct 2370 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLN 2429 Query 1592 CDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYD 1651 CD++ +G+TFI+ E A DLS ++KRPI+PTD + V V ++L++++ GQ+TY+ Sbjct 2430 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYE 2489 Query 1652 DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDK 1709 S FV+ NL ++ KG ++V+V + + D + +A+V+Y+Q + +PIL++D+ Sbjct 2490 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQ 2549 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 L++ +T V+ MFD YVDTF + F V L+AL+ATAHS + +G + VL TF+ Sbjct 2550 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2609 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQ 1829 S +R++ +D+DVDTK + + + + ++LE+T++SCNN++ TY K +N+ + DLG I+ Sbjct 2610 SASRQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACID 2668 Query 1830 NSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSV 1889 +A+H++++VA+ VS IW+V + LS +++ +++ A K + ++LT V+V Sbjct 2669 CNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNV 2728 Query 1890 LTTPFSLKGG 1899 +TT +SLKGG Sbjct 2729 ITTKISLKGG 2738 Range 2: 821 to 929 Score:64.2 bits(224), Expect:1e-08, Method:Compositional matrix adjust., Identities:35/114(31%), Positives:68/114(59%), Gaps:5/114(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 + VTF E+ V+ K +++ +ELD + +LN C+V+ V+ ++ EF VV + Sbjct 821 TKGVTFGEDTVVE--VQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPE 114 A+ L P +L ++++ L+ +++LFD++GEE L+S++YC+F +P+ Sbjct 879 AVVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPD 929 Range 3: 1020 to 1162 Score:58.4 bits(202), Expect:6e-07, Method:Compositional matrix adjust., Identities:47/145(32%), Positives:86/145(59%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+ ++ ++ V+VN+AN H+ HGGGVA A+ A+ KE+ + +K +G + G+ Sbjct 1020 DIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSC 1079 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K L+VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1080 LLSGHNLAKKCLHVVGPN--LNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1137 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV +V N++ ++ + Sbjct 1138 LQMCVQTVRTQVYIVVNDKVLYEQV 1162 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6T7.1 Length: 4380 Range 1: 2255 to 2738 Score:287 bits(1073), Expect:5e-79, Method:Compositional matrix adjust., Identities:182/490(37%), Positives:319/490(65%), Gaps:9/490(1%) Query 1413 QYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAW 1472 ++C+GS++C CL+G+D LD+Y A++ +Q ++ +L + E + +Y L+T Sbjct 2255 DFCEGSFPCSVCLSGLDSLDSYPALETIQ--VTISSYKLDLTILGLAAEWFFAYMLFTKF 2312 Query 1473 FYPLFALISI-QILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLF 1531 FY L++L +I Q++ ++ F+ ++ W +++++S+ +M P +R YI++ASF + Sbjct 2313 FY-LLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYIW 2369 Query 1532 ILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCID 1591 + H+ GC+ + C+ CYKRNR+ RV C+TIV GM R + V ANGG GFC H+WNC++ Sbjct 2370 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLN 2429 Query 1592 CDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYD 1651 CD++ +G+TFI+ E A DLS ++KRPI+PTD + V V ++L++++ GQ+TY+ Sbjct 2430 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYE 2489 Query 1652 DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDK 1709 S FV+ NL ++ KG ++V+V + + D + +A+V+Y+Q + +PIL++D+ Sbjct 2490 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQ 2549 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 L++ +T V+ MFD YVDTF + F V L+AL+ATAHS + +G + VL TF+ Sbjct 2550 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2609 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQ 1829 S +R++ +D+DVDTK + + + + ++LE+T++SCNN++ TY K +N+ + DLG I+ Sbjct 2610 SASRQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACID 2668 Query 1830 NSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSV 1889 +A+H++++VA+ VS IW+V + LS +++ +++ A K + ++LT V+V Sbjct 2669 CNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNV 2728 Query 1890 LTTPFSLKGG 1899 +TT +SLKGG Sbjct 2729 ITTKISLKGG 2738 Range 2: 821 to 929 Score:64.2 bits(224), Expect:1e-08, Method:Compositional matrix adjust., Identities:35/114(31%), Positives:68/114(59%), Gaps:5/114(4%) Query 1 GRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVID 60 + VTF E+ V+ K +++ +ELD + +LN C+V+ V+ ++ EF VV + Sbjct 821 TKGVTFGEDTVVE--VQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPE 114 A+ L P +L ++++ L+ +++LFD++GEE L+S++YC+F +P+ Sbjct 879 AVVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPD 929 Range 3: 1020 to 1162 Score:58.2 bits(201), Expect:8e-07, Method:Compositional matrix adjust., Identities:47/145(32%), Positives:86/145(59%), Gaps:2/145(1%) Query 432 DIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCY 491 DI+ ++ ++ V+VN+AN H+ HGGGVA A+ A+ KE+ + +K +G + G+ Sbjct 1020 DIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSC 1079 Query 492 VSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVS 551 + +G +L K L+VVGP+ ++ + LL Y ++N D +++ L+SAGIF+ + S Sbjct 1080 LLSGHNLAKKCLHVVGPN--LNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1137 Query 552 LTYLLGTAEKQVVLVSNNQEDFDLI 576 L + T QV +V N++ ++ + Sbjct 1138 LQMCVQTVRTQVYIVVNDKVLYEQV 1162 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 2272 to 2785 Score:240 bits(897), Expect:1e-63, Method:Compositional matrix adjust., Identities:168/518(32%), Positives:305/518(58%), Gaps:16/518(3%) Query 1390 IKSTFSLVTICDLYSIQ--DVGFKN-QYCNG-SIACQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ T+CD +++ + +F ++C+ S+ CQ CL G D L Y A++++Q ++ Sbjct 2272 VRSYLGIRTLCDGLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQ--TH 2329 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLL 1505 ++V + + + +E++++Y LYT+ F L+ +++ Q + + + + + + V L Sbjct 2330 ITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGL 2389 Query 1506 VSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 L +P H ++R Y ++A F++ F + HV GC +CL+CYKRNR RV STI Sbjct 2390 FFLVTHIPLHGLVRVYNFLACLWFLRKF--YSHVINGCKDTACLLCYKRNRLTRVEASTI 2447 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V G R + + ANGGT++C KH+WNC++CD+ GNTFI E A DL+ L+R I+PTD Sbjct 2448 VCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQ 2507 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGVPNMHVVV 1679 + V V + + L Y+RDG Y+ F + +L V G+P+ + ++ Sbjct 2508 SHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLI 2567 Query 1680 VENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMF 1737 + + + L + V+Y+Q L +P+L+VD NL+TT + ++ M+D ++++F+S+F Sbjct 2568 YDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLF 2627 Query 1738 DVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSA 1797 V + L+ LI TA+ +++G ++ VL TF AR +++SDV+T + D++ A Sbjct 2628 SVSRDKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKN 2687 Query 1798 GLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQL 1857 +++LT E NN VP Y+K D+I + DLG LI+ A V+ + A +C+W+ + + +L Sbjct 2688 DIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKL 2747 Query 1858 SSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 S F+++++ AC K + ++LT +K A ++L+ FS Sbjct 2748 SDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2785 Range 2: 1168 to 1322 Score:76.8 bits(272), Expect:2e-12, Method:Compositional matrix adjust., Identities:62/157(39%), Positives:94/157(59%), Gaps:2/157(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 I +V +V GD I+++ + V+VN+AN H+ HGGG+A AI A+G + E+ + + + Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 G GD + G L ++L VVGPDAR + ALL R YK +NK VVT LIS+ Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDA--ALLKRCYKTFNKHTIVVTPLISS 1285 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISK 578 GIFSV + VS+ YLL+ +V NN++ ++ ++ Sbjct 1286 GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1322 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 2265 to 2778 Score:240 bits(896), Expect:1e-63, Method:Compositional matrix adjust., Identities:168/518(32%), Positives:305/518(58%), Gaps:16/518(3%) Query 1390 IKSTFSLVTICDLYSIQ--DVGFK-NQYCNG-SIACQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ T+CD ++ + +F ++C+ S+ CQ CL G D L Y A++++Q ++ Sbjct 2265 VRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQ--TH 2322 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLL 1505 ++V + + + +E++++Y LYT+ F L+ +++ Q + + + + + + V L Sbjct 2323 ITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGL 2382 Query 1506 VSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 L +P H ++R Y ++A F++ F + HV GC +CL+CYKRNR RV STI Sbjct 2383 FFLVTHIPLHGLVRVYNFLACLWFLRKF--YSHVINGCKDTACLLCYKRNRLTRVEASTI 2440 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V G R + + ANGGT++C KH+WNC++CD+ GNTFI E A DL+ L+R I+PTD Sbjct 2441 VCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQ 2500 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGVPNMHVVV 1679 + V V + + L Y+RDG Y+ F + +L V G+P+ + ++ Sbjct 2501 SHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLI 2560 Query 1680 VENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMF 1737 + + + L + V+Y+Q L +P+L+VD NL+TT + ++ M+D ++++F+S+F Sbjct 2561 YDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLF 2620 Query 1738 DVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSA 1797 V + L+ LI TA+ +++G ++ +VL TF AR +++SDV+T + D++ A Sbjct 2621 SVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKN 2680 Query 1798 GLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQL 1857 +++LT E NN VP Y+K D+I + DLG LI+ A V+ + A +C+W+ + + +L Sbjct 2681 DIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKL 2740 Query 1858 SSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 S F+++++ AC K + ++LT +K A ++L+ FS Sbjct 2741 SDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2778 Range 2: 1161 to 1315 Score:78.6 bits(279), Expect:4e-13, Method:Compositional matrix adjust., Identities:61/157(39%), Positives:95/157(60%), Gaps:2/157(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 I +V +V GD I+++ + ++VN+AN H+ HGGG+A I A+G + E+ + + + Sbjct 1161 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 1220 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 +G GD + G L ++L+VVGPDAR + ALL R YK +NK VVT LISA Sbjct 1221 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDA--ALLKRCYKAFNKHTIVVTPLISA 1278 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISK 578 GIFSV + VS+ YLL+ +V NN++ ++ ++ Sbjct 1279 GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1315 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 2272 to 2785 Score:239 bits(893), Expect:2e-63, Method:Compositional matrix adjust., Identities:168/518(32%), Positives:305/518(58%), Gaps:16/518(3%) Query 1390 IKSTFSLVTICDLYSIQ--DVGFKN-QYCNG-SIACQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ T+CD +++ + +F ++C+ S+ CQ CL G D L Y A++++Q ++ Sbjct 2272 VRSYLGIRTLCDGLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQ--TH 2329 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLL 1505 ++V + + + +E++++Y LYT+ F L+ +++ Q + + + + + + V L Sbjct 2330 ITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGL 2389 Query 1506 VSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 L +P H ++R Y ++A F++ F + HV GC +CL+CYKRNR RV STI Sbjct 2390 FFLVTHIPLHGLVRVYNFLACLWFLRKF--YSHVINGCKDTACLLCYKRNRLTRVEASTI 2447 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V G R + + ANGGT++C KH+WNC++CD+ GNTFI E A DL+ L+R I+PTD Sbjct 2448 VCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQ 2507 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGVPNMHVVV 1679 + V V + + L Y+RDG Y+ F + +L V G+P+ + ++ Sbjct 2508 SHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLI 2567 Query 1680 VENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMF 1737 + + + L + V+Y+Q L +P+L+VD NL+TT + ++ M+D ++++F+S+F Sbjct 2568 YDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLF 2627 Query 1738 DVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSA 1797 V + L+ LI TA+ +++G ++ VL TF AR +++SDV+T + D++ A Sbjct 2628 SVSRDKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKN 2687 Query 1798 GLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQL 1857 +++LT E NN VP Y+K D+I + DLG LI+ A V+ + A +C+W+ + + +L Sbjct 2688 DIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKL 2747 Query 1858 SSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 S F+++++ AC K + ++LT +K A ++L+ FS Sbjct 2748 SDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2785 Range 2: 1168 to 1322 Score:76.8 bits(272), Expect:2e-12, Method:Compositional matrix adjust., Identities:62/157(39%), Positives:94/157(59%), Gaps:2/157(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 I +V +V GD I+++ + V+VN+AN H+ HGGG+A AI A+G + E+ + + + Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 G GD + G L ++L VVGPDAR + ALL R YK +NK VVT LIS+ Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDA--ALLKRCYKTFNKHTIVVTPLISS 1285 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISK 578 GIFSV + VS+ YLL+ +V NN++ ++ ++ Sbjct 1286 GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1322 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 2265 to 2778 Score:239 bits(893), Expect:2e-63, Method:Compositional matrix adjust., Identities:168/518(32%), Positives:305/518(58%), Gaps:16/518(3%) Query 1390 IKSTFSLVTICDLYSIQ--DVGFK-NQYCNG-SIACQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ T+CD ++ + +F ++C+ S+ CQ CL G D L Y A++++Q ++ Sbjct 2265 VRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQ--TH 2322 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLL 1505 ++V + + + +E++++Y LYT+ F L+ +++ Q + + + + + + V L Sbjct 2323 ITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGL 2382 Query 1506 VSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTI 1563 L +P H ++R Y ++A F++ F + HV GC +CL+CYKRNR RV STI Sbjct 2383 FFLVTHIPLHGLVRVYNFLACLWFLRKF--YSHVINGCKDTACLLCYKRNRLTRVEASTI 2440 Query 1564 VGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDV 1623 V G R + + ANGGT++C KH+WNC++CD+ GNTFI E A DL+ L+R I+PTD Sbjct 2441 VCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQ 2500 Query 1624 AYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGVPNMHVVV 1679 + V V + + L Y+RDG Y+ F + +L V G+P+ + ++ Sbjct 2501 SHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLI 2560 Query 1680 VENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMF 1737 + + + L + V+Y+Q L +P+L+VD NL+TT + ++ M+D ++++F+S+F Sbjct 2561 YDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLF 2620 Query 1738 DVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSA 1797 V + L+ LI TA+ +++G ++ +VL TF AR +++SDV+T + D++ A Sbjct 2621 SVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKN 2680 Query 1798 GLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQL 1857 +++LT E NN VP Y+K D+I + DLG LI+ A V+ + A +C+W+ + + +L Sbjct 2681 DIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKL 2740 Query 1858 SSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 1895 S F+++++ AC K + ++LT +K A ++L+ FS Sbjct 2741 SDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2778 Range 2: 1161 to 1315 Score:78.6 bits(279), Expect:4e-13, Method:Compositional matrix adjust., Identities:61/157(39%), Positives:95/157(60%), Gaps:2/157(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 I +V +V GD I+++ + ++VN+AN H+ HGGG+A I A+G + E+ + + + Sbjct 1161 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 1220 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 +G GD + G L ++L+VVGPDAR + ALL R YK +NK VVT LISA Sbjct 1221 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDA--ALLKRCYKAFNKHTIVVTPLISA 1278 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISK 578 GIFSV + VS+ YLL+ +V NN++ ++ ++ Sbjct 1279 GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1315 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 2311 to 2831 Score:239 bits(890), Expect:4e-63, Method:Compositional matrix adjust., Identities:169/532(32%), Positives:317/532(59%), Gaps:33/532(6%) Query 1390 IKSTFSLVTICD--LYSIQDVGFK-NQYCNGSIA-CQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ ++CD + + ++V++ N++C+ A C+ CL G D L Y A++++Q ++ Sbjct 2311 LRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQ--TH 2368 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQ-------ILTTWLPELFMLSTL 1498 ++V + + +V+E+ ++Y LYT+ F L+ ++S Q + W + +++S Sbjct 2369 VTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGY 2428 Query 1499 HWSVRLLVSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSL 1556 V + L+ ++R+Y ++A F++ F + HV GC +CL+CYKRNR Sbjct 2429 FFCVTHIPLLG-------LVRIYNFLACLWFLRRF--YNHVINGCKDTACLLCYKRNRLT 2479 Query 1557 RVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKR 1616 RV ST+V G R + ++ANGGT+FC +H+WNC+DCD+ GNTFI E A DL+ L+R Sbjct 2480 RVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRR 2539 Query 1617 PIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGV 1672 ++PTD + V V + ++L Y R+G Y+ F + +L V G+ Sbjct 2540 LVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGI 2599 Query 1673 PNMHVVVVENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYV 1730 P+ + ++ ++ + L + V+Y+Q L +P+L+VD N++TT + ++ M+D YV Sbjct 2600 PEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYV 2659 Query 1731 DTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADS 1790 ++F+S+F+V++ L+ L+ATA+ +K+G ++ V+ TF AR + +++SDV+T + D+ Sbjct 2660 NSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDA 2719 Query 1791 VMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWS 1850 + A +L+LT E+ NN VP+Y+K D++ +ADLG LI+ +A V+ + A +CIW+ Sbjct 2720 LQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWN 2779 Query 1851 VDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS---LKGG 1899 + +LS ++++++ AC K + ++LT ++ + ++L+ FS L GG Sbjct 2780 SSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSGG 2831 Range 2: 1195 to 1345 Score:81.3 bits(289), Expect:7e-14, Method:Compositional matrix adjust., Identities:63/153(41%), Positives:92/153(60%), Gaps:2/153(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + +V +V GD I V++ ++VN+AN H+ HGGG+A AI A+G E+ D V+ Sbjct 1195 LNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNF 1254 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 G GD + G L +L+VVGPDAR ++Q LL R YK +NKY VV+ LISA Sbjct 1255 YGPLNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISA 1312 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 574 GIF V + VSL YLL+ + + +V N++ ++ Sbjct 1313 GIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 1345 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 2311 to 2831 Score:238 bits(887), Expect:6e-63, Method:Compositional matrix adjust., Identities:169/532(32%), Positives:317/532(59%), Gaps:33/532(6%) Query 1390 IKSTFSLVTICD--LYSIQDVGFK-NQYCNGSIA-CQFCLAGFDMLDNYKAIDVVQYEAD 1445 ++S +++ ++CD + + ++V++ N++C+ A C+ CL G D L Y A++++Q ++ Sbjct 2311 LRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQ--TH 2368 Query 1446 RRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQ-------ILTTWLPELFMLSTL 1498 ++V + + +V+E+ ++Y LYT+ F L+ ++S Q + W + +++S Sbjct 2369 VTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGY 2428 Query 1499 HWSVRLLVSLANMLPAHVFMRFYIIIAS--FIKLFILFRHVAYGCSKPGCLFCYKRNRSL 1556 V + L+ ++R+Y ++A F++ F + HV GC +CL+CYKRNR Sbjct 2429 FFCVTHIPLLG-------LVRIYNFLACLWFLRRF--YNHVINGCKDTACLLCYKRNRLT 2479 Query 1557 RVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKR 1616 RV ST+V G R + ++ANGGT+FC +H+WNC+DCD+ GNTFI E A DL+ L+R Sbjct 2480 RVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRR 2539 Query 1617 PIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV----KGV 1672 ++PTD + V V + ++L Y R+G Y+ F + +L V G+ Sbjct 2540 LVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGI 2599 Query 1673 PNMHVVVVENDADKANFLNAA--VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYV 1730 P+ + ++ ++ + L + V+Y+Q L +P+L+VD N++TT + ++ M+D YV Sbjct 2600 PEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYV 2659 Query 1731 DTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADS 1790 ++F+S+F+V++ L+ L+ATA+ +K+G ++ V+ TF AR + +++SDV+T + D+ Sbjct 2660 NSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDA 2719 Query 1791 VMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWS 1850 + A +L+LT E+ NN VP+Y+K D++ +ADLG LI+ +A V+ + A +CIW+ Sbjct 2720 LQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWN 2779 Query 1851 VDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS---LKGG 1899 + +LS ++++++ AC K + ++LT ++ + ++L+ FS L GG Sbjct 2780 SSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSGG 2831 Range 2: 1195 to 1345 Score:80.7 bits(287), Expect:9e-14, Method:Compositional matrix adjust., Identities:63/153(41%), Positives:92/153(60%), Gaps:2/153(1%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + +V +V GD I V++ ++VN+AN H+ HGGG+A AI A+G E+ D V+ Sbjct 1195 LNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNF 1254 Query 482 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 541 G GD + G L +L+VVGPDAR ++Q LL R YK +NKY VV+ LISA Sbjct 1255 YGPLNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISA 1312 Query 542 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 574 GIF V + VSL YLL+ + + +V N++ ++ Sbjct 1313 GIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 1345 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1-non-structural protein 3 fusion; Short=nsp1-nsp3 fusion [Murine hepatitis virus strain defective JHM] Sequence ID: P26627.1 Length: 500 Range 1: 270 to 495 Score:143 bits(526), Expect:4e-37, Method:Compositional matrix adjust., Identities:93/226(41%), Positives:138/226(61%), Gaps:19/226(8%) Query 123 GVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDG--PCVETSDSQVEEDVEM 180 + E D G +T ++ + E A ++E +E+ D+ +C + ++ E VE Sbjct 270 EMTEPDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVED 329 Query 181 SDFADLESVIQD-----YENV-CFE---------FYTTEPE--FVKVLDLYVPKATRNNC 223 S +++L++ ++ YE+V F+ FY+ ++ KV ++Y P R NC Sbjct 330 SILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNC 389 Query 224 WLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFA 283 WLRS L VMQ LP +FKD +Q LW+ YK Y Q FVD LV+ P +I++PQGGYVADFA Sbjct 390 WLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA 449 Query 284 YWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCG 329 Y FL+ C + A W+C+KC++ LKL+GLDA+FFYGDVVSH+CKC+ Sbjct 450 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCS 495 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 2035 to 2483 Score:123 bits(448), Expect:1e-26, Method:Compositional matrix adjust., Identities:133/491(27%), Positives:259/491(52%), Gaps:44/491(8%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 K++YC+GS++C+ CL G++ L ++ +DVV + F + + +V+ LI + Sbjct 2035 KDDYCDGSLGCKMCLFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLI-----FG 2089 Query 1471 AWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKL 1530 + F L + + + + ++ +W ++++ P +V+ ++ IK+ Sbjct 2090 DNYLRCFLLYFVAQMISTVGVFLGYKETNWFLHFI-------PFDVICDELLVTVIVIKV 2142 Query 1531 FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCI 1590 + + RHV +GC +P+C+ C K R R +TIV G+ R + V ANGG+ FC KH+ C+ Sbjct 2143 ISFVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCV 2202 Query 1591 DCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTY 1650 DCDSY G+TFIT E + +L++ K +QPT+ AY + V + RL Y + + Y Sbjct 2203 DCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRL-YSCETFWRY 2261 Query 1651 D-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDK 1709 + D+ S + +++ K V + +V +N+++ ++ NA+V+++Q L RPI +VD Sbjct 2262 NFDITESKY-SCKEVF--KNCNVLDDFIVFNNNGTNVTQVKNASVYFSQLLCRPIKLVDS 2318 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 +L++T + + Y+D + + F+ K LNA ++ A+ Sbjct 2319 ELLST--LSVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAE----------------- 2356 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAA-DLGVLI 1828 C R +++ + ++ ++ +A ++ L+D S NN+V++Y K ++ ++A DL+ + Sbjct 2357 -CKR---ALGLSISDHEFTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCM 2412 Query 1829 QNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVS 1888 + +AK V++NV + +W FN LS++ + + K+ GL + LT N + A Sbjct 2413 RAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQ 2472 Query 1889 VLTTPFSLKGG 1899 + +T++ K G Sbjct 2473 IPATSIVAKQG 2483 Range 2: 1277 to 1417 Score:47.7 bits(161), Expect:0.001, Method:Compositional matrix adjust., Identities:48/149(32%), Positives:85/149(57%), Gaps:12/149(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + NV F +GD+ V + V + +VN+AN ++AHGGG+AKA+ V + K + + Sbjct 1277 VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDV-----YTKGKLQRLSK 1331 Query 482 KGVCATGDCYVSTGGKL-CKT--VLNVVGPDARTQGKQSYALLERVYKHLNKYDCV-VTT 537 + +G V+TG + C + ++NVVGP +GK+ LL + Y+ +N+ + +T Sbjct 1332 EHIGLAGKVKVGTGVMVECDSLRIFNVVGP---RKGKHERDLLIKAYNTINNEQGTPLTP 1388 Query 538 LISAGIFSVPSDVSLTYLLGTAEKQVVLV 566 ++S GIF++ + SL LL+ + + V V Sbjct 1389 ILSCGIFGIKLETSLEVLLDVCNTKEVKV 1417 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E] Sequence ID: P0C6U2.1 Length: 4085 Range 1: 2035 to 2483 Score:122 bits(447), Expect:1e-26, Method:Compositional matrix adjust., Identities:133/491(27%), Positives:259/491(52%), Gaps:44/491(8%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 K++YC+GS++C+ CL G++ L ++ +DVV + F + + +V+ LI + Sbjct 2035 KDDYCDGSLGCKMCLFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLI-----FG 2089 Query 1471 AWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKL 1530 + F L + + + + ++ +W ++++ P +V+ ++ IK+ Sbjct 2090 DNYLRCFLLYFVAQMISTVGVFLGYKETNWFLHFI-------PFDVICDELLVTVIVIKV 2142 Query 1531 FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCI 1590 + + RHV +GC +P+C+ C K R R +TIV G+ R + V ANGG+ FC KH+ C+ Sbjct 2143 ISFVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCV 2202 Query 1591 DCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTY 1650 DCDSY G+TFIT E + +L++ K +QPT+ AY + V + RL Y + + Y Sbjct 2203 DCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRL-YSCETFWRY 2261 Query 1651 D-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDK 1709 + D+ S + +++ K V + +V +N+++ ++ NA+V+++Q L RPI +VD Sbjct 2262 NFDITESKY-SCKEVF--KNCNVLDDFIVFNNNGTNVTQVKNASVYFSQLLCRPIKLVDS 2318 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 +L++T + + Y+D + + F+ K LNA ++ A+ Sbjct 2319 ELLST--LSVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAE----------------- 2356 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAA-DLGVLI 1828 C R +++ + ++ ++ +A ++ L+D S NN+V++Y K ++ ++A DL+ + Sbjct 2357 -CKR---ALGLSISDHEFTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCM 2412 Query 1829 QNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVS 1888 + +AK V++NV + +W FN LS++ + + K+ GL + LT N + A Sbjct 2413 RAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQ 2472 Query 1889 VLTTPFSLKGG 1899 + +T++ K G Sbjct 2473 IPATSIVAKQG 2483 Range 2: 1277 to 1417 Score:47.7 bits(161), Expect:0.001, Method:Compositional matrix adjust., Identities:48/149(32%), Positives:85/149(57%), Gaps:12/149(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + NV F +GD+ V + V + +VN+AN ++AHGGG+AKA+ V + K + + Sbjct 1277 VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDV-----YTKGKLQRLSK 1331 Query 482 KGVCATGDCYVSTGGKL-CKT--VLNVVGPDARTQGKQSYALLERVYKHLNKYDCV-VTT 537 + +G V+TG + C + ++NVVGP +GK+ LL + Y+ +N+ + +T Sbjct 1332 EHIGLAGKVKVGTGVMVECDSLRIFNVVGP---RKGKHERDLLIKAYNTINNEQGTPLTP 1388 Query 538 LISAGIFSVPSDVSLTYLLGTAEKQVVLV 566 ++S GIF++ + SL LL+ + + V V Sbjct 1389 ILSCGIFGIKLETSLEVLLDVCNTKEVKV 1417 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63] Sequence ID: P0C6U6.1 Length: 4060 Range 1: 2013 to 2461 Score:109 bits(398), Expect:1e-22, Method:Compositional matrix adjust., Identities:133/491(27%), Positives:261/491(53%), Gaps:44/491(8%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 K+ YC S+ C+ CL +++ +++ +V + ++ + +VI LI + +Y Sbjct 2013 KDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFG-NMYL 2071 Query 1471 AWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKL 1530 + L+ +++ Q+++T + ++ + +W +++ V++ + + F+ +I+ I L Sbjct 2072 R--FGLLYFVA-QFIST-FGSFLGFHQKQWFLHF-VPFDVL--CNEFLATFIVCK--IVL 2122 Query 1531 FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCI 1590 F+ RH+ GC++++C+ C K R RV TI+ GM + + V ANGGT FC+KH+ C+ Sbjct 2123 FV--RHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCV 2180 Query 1591 DCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTY 1650 +CDS+ PGNTFI + A +L++ +K ++QPT AY + V V + RL Y D + Y Sbjct 2181 NCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRL-YSGDTFWRY 2239 Query 1651 D-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDK 1709 D D+ S + ++L K V + +V +++++ +++ NA V+++Q L PI +V+ Sbjct 2240 DFDITESKY-SCKEVL--KNCNVLENFIVYNNSGSNITQIKNACVYFSQLLCEPIKLVNS 2296 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 +L++T + + YVD + + F K L A ++ A+ G + D F+ Sbjct 2297 ELLST--LSVDFNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLTVSD--DDFV 2349 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAA-DLGVLI 1828 S +V +A ++ L+D S NN+ +Y K ++ ++ D++ + Sbjct 2350 S-------------------AVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCM 2390 Query 1829 QNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVS 1888 + ++K V+ NV +++ +W+V FN LS + + L K+ GL + LT+N + A Sbjct 2391 RAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQ 2450 Query 1889 VLTTPFSLKGG 1899 V +T++ K G Sbjct 2451 VPATSIVAKQG 2461 Range 2: 1268 to 1393 Score:42.9 bits(143), Expect:0.029, Method:Compositional matrix adjust., Identities:45/131(34%), Positives:72/131(54%), Gaps:6/131(4%) Query 428 FVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCAT 487 F GDI + + V + VVN+AN ++ HGGGVA+AI + + Q+ + D + S+G Sbjct 1268 FYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKV 1327 Query 488 GDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKH-LNKYDCVVTTLISAGIFSV 546 G + K+ V+NVVGP + GK+ +LL Y+ L + + L+S GIF+V Sbjct 1328 GAGVMLECEKF--NVFNVVGPRT---GKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGV 1382 Query 547 PSDVSLTYLLG 557 + SL L++ Sbjct 1383 RIENSLKALFS 1393 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 2013 to 2461 Score:109 bits(397), Expect:1e-22, Method:Compositional matrix adjust., Identities:133/491(27%), Positives:261/491(53%), Gaps:44/491(8%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 K+ YC S+ C+ CL +++ +++ +V + ++ + +VI LI + +Y Sbjct 2013 KDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFG-NMYL 2071 Query 1471 AWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKL 1530 + L+ +++ Q+++T + ++ + +W +++ V++ + + F+ +I+ I L Sbjct 2072 R--FGLLYFVA-QFIST-FGSFLGFHQKQWFLHF-VPFDVL--CNEFLATFIVCK--IVL 2122 Query 1531 FILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCI 1590 F+ RH+ GC++++C+ C K R RV TI+ GM + + V ANGGT FC+KH+ C+ Sbjct 2123 FV--RHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCV 2180 Query 1591 DCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTY 1650 +CDS+ PGNTFI + A +L++ +K ++QPT AY + V V + RL Y D + Y Sbjct 2181 NCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRL-YSGDTFWRY 2239 Query 1651 D-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDK 1709 D D+ S + ++L K V + +V +++++ +++ NA V+++Q L PI +V+ Sbjct 2240 DFDITESKY-SCKEVL--KNCNVLENFIVYNNSGSNITQIKNACVYFSQLLCEPIKLVNS 2296 Query 1710 NLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFL 1769 +L++T + + YVD + + F K L A ++ A+ G + D F+ Sbjct 2297 ELLST--LSVDFNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLTVSD--DDFV 2349 Query 1770 SCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAA-DLGVLI 1828 S +V +A ++ L+D S NN+ +Y K ++ ++ D++ + Sbjct 2350 S-------------------AVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCM 2390 Query 1829 QNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVS 1888 + ++K V+ NV +++ +W+V FN LS + + L K+ GL + LT+N + A Sbjct 2391 RAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQ 2450 Query 1889 VLTTPFSLKGG 1899 V +T++ K G Sbjct 2451 VPATSIVAKQG 2461 Range 2: 1268 to 1393 Score:43.2 bits(144), Expect:0.029, Method:Compositional matrix adjust., Identities:45/131(34%), Positives:72/131(54%), Gaps:6/131(4%) Query 428 FVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCAT 487 F GDI + + V + VVN+AN ++ HGGGVA+AI + + Q+ + D + S+G Sbjct 1268 FYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKV 1327 Query 488 GDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKH-LNKYDCVVTTLISAGIFSV 546 G + K+ V+NVVGP + GK+ +LL Y+ L + + L+S GIF+V Sbjct 1328 GAGVMLECEKF--NVFNVVGPRT---GKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGV 1382 Query 547 PSDVSLTYLLG 557 + SL L++ Sbjct 1383 RIENSLKALFS 1393 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 1752 to 2240 Score:97.5 bits(351), Expect:8e-19, Method:Compositional matrix adjust., Identities:130/546(24%), Positives:264/546(48%), Gaps:76/546(13%) Query 1350 IIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVG 1409 ++AT++++WF + V+F+++ + + F ++ G + K +F ++ Sbjct 1752 VLATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVL------------ 1799 Query 1410 FKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ--YEADRRAFV-----DYTGVLKIVIEL 1462 +YC + + C+ CL + D L+ YK V+ Y +F+ Y L + + Sbjct 1800 ---RYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKP 1856 Query 1463 IVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYI 1522 + ++ + + + +++ +L T + L+W V+ + S N + A + ++ Sbjct 1857 VAGFVIIC--YCVKYLVLNSTVLQT------GVCFLDWFVQTVFSHFNFMGAGFYFWL-- 1906 Query 1523 IIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFC 1582 F K++I +H+ Y C C C + RS R S +VGG + +V +N+G FC Sbjct 1907 ----FYKIYIQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFC 1961 Query 1583 SKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY 1642 +H+W C +CD Y NTF++ E A +LS LKR ++PT AYH V + V+ ++ L Y Sbjct 1962 KRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKY 2021 Query 1643 ERDGQRTYDDVNASL-------FVDYSNLLHSKVK--GVPNMHVVVVENDADKA--NFLN 1691 + + D ++++ F+ + +L +K ++N +V + ++ A + N Sbjct 2022 -KAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKN 2080 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AA++YAQ L +PIL++D+ L +V+ +++D + S++ VD +LN Sbjct 2081 AAIYYAQYLCKPILILDQALYEQLVVE-PVSKSVIDKVCSILSSIISVDTAALN------ 2133 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 K GT + D++LS ++ ++D + C + V + T+++ N++P Sbjct 2134 ---YKAGT----LRDALLSITKDEEAVDMAI--FCHNHDV--------DYTGDGFTNVIP 2176 Query 1812 TY-LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 1870 +Y + +++ + D G LI+ A + V + + V +W + +LS L A Sbjct 2177 SYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATV 2234 Query 1871 KTGLKL 1876 K+G+++ Sbjct 2235 KSGVRF 2240 Range 2: 1180 to 1370 Score:47.4 bits(160), Expect:0.001, Method:Compositional matrix adjust., Identities:50/209(24%), Positives:109/209(52%), Gaps:27/209(12%) Query 716 ILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDL 775 I LT DGV++ + + G+S+G+ +G+V+ K K+ F D++ ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYA--------------KNKIVFTADDVEDKEI 1224 Query 776 -------KAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 K++ + +D + + Y + L + KW+V + ++++ + + NC ++ + ++ Sbjct 1225 LYVPTTDKSILEYYGLDAQKYVIYLQTLAQ--KWNVQYRDNFLILEWRDGNCWISSAIVL 1282 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ--VD 886 LQ+ +++FK EAW + +G P+ FV+ A K GD +D+ +L + + D Sbjct 1283 LQAAKIRFKGFL-TEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDAD 1341 Query 887 LTGAICDFEIACKCGVKQEQRTGVDAVMH 915 T A+ ++C+CG+K + G++A ++ Sbjct 1342 YTNAFLKKRVSCNCGIKSYELRGLEACIQ 1370 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 1754 to 2226 Score:97.5 bits(351), Expect:8e-19, Method:Compositional matrix adjust., Identities:127/530(24%), Positives:258/530(48%), Gaps:76/530(14%) Query 1350 IIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVG 1409 ++AT++++WF + V+F+++ + + F ++ G + K +F ++ Sbjct 1754 VFATLLIVWFIYTSNPVVFTGIRVLDFLFEGSLCGPYNDYGKDSFDVL------------ 1801 Query 1410 FKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ--YEADRRAFV-----DYTGVLKIVIEL 1462 +YC G ++C+ CL + D L+ YK V+ Y ++ Y L + + Sbjct 1802 ---RYCAGDFTCRVCLHDRDSLHLYKHAYSVEQIYKDAASGINFNWNWLYLVFLILFVKP 1858 Query 1463 IVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYI 1522 + ++ + + + ++S +L T ++ L+W V+ + + N + A + ++ Sbjct 1859 VAGFVIIC--YCVKYLVLSSTVLQT------GVGFLDWFVKTVFTHFNFMGAGFYFWL-- 1908 Query 1523 IIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFC 1582 F K+++ +H+ Y C C C + RS R S +VGG + +V +N+G FC Sbjct 1909 ----FYKIYVQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFC 1963 Query 1583 SKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY 1642 +H+W C +CD Y NTF++ E A +LS LKR ++PT AYH V + V+ ++ L Y Sbjct 1964 KRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKY 2023 Query 1643 ERDGQRTYDDVNASL-------FVDYSNLLHSKVK--GVPNMHVVVVENDADKA--NFLN 1691 + + D+ ++++ F+ + +L +K ++N +V + ++ A + N Sbjct 2024 -KAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKN 2082 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AAV+YAQ L +PIL++D+ L +V+ +++D + +++ VD +LN Sbjct 2083 AAVYYAQYLCKPILILDQALYEQLIVE-PVSKSVIDKVCSILSNIISVDTAALN------ 2135 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 K GT + D++LS ++ ++D + C + V E T+++ N++P Sbjct 2136 ---YKAGT----LRDALLSITKDEEAVDMAI--FCHNHEV--------EYTGDGFTNVIP 2178 Query 1812 TY-LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 +Y + D++ + D G LI+ A + V + + V +W + +LS Sbjct 2179 SYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDS 2226 Range 2: 1182 to 1372 Score:47.7 bits(161), Expect:0.001, Method:Compositional matrix adjust., Identities:52/202(26%), Positives:109/202(53%), Gaps:13/202(6%) Query 716 ILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDL 775 I LT DGV++ + + G+S+G+ +G+VF V D++ K +F+ + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVFARNKVVFSAD-DVEDKEILFIPTTD------ 1233 Query 776 KAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLK 835 K++ + +D + ++Y + L + KW+V + +++ + + NC ++ + ++LQ+ +++ Sbjct 1234 KTILEYYGLDAQKYVTYLQTLAQ--KWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 836 FKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ--VDLTGAICD 893 FK EAW + +G P+ FV+ A K GD +D+ +L + + D T A+ Sbjct 1292 FKGFL-AEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 894 FEIACKCGVKQEQRTGVDAVMH 915 ++C+CGVK + G++A ++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQ 1372 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 1752 to 2240 Score:97.3 bits(350), Expect:8e-19, Method:Compositional matrix adjust., Identities:130/546(24%), Positives:264/546(48%), Gaps:76/546(13%) Query 1350 IIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVG 1409 ++AT++++WF + V+F+++ + + F ++ G + K +F ++ Sbjct 1752 VLATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVL------------ 1799 Query 1410 FKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ--YEADRRAFV-----DYTGVLKIVIEL 1462 +YC + + C+ CL + D L+ YK V+ Y +F+ Y L + + Sbjct 1800 ---RYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKP 1856 Query 1463 IVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYI 1522 + ++ + + + +++ +L T + L+W V+ + S N + A + ++ Sbjct 1857 VAGFVIIC--YCVKYLVLNSTVLQT------GVCFLDWFVQTVFSHFNFMGAGFYFWL-- 1906 Query 1523 IIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFC 1582 F K++I +H+ Y C C C + RS R S +VGG + +V +N+G FC Sbjct 1907 ----FYKIYIQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFC 1961 Query 1583 SKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY 1642 +H+W C +CD Y NTF++ E A +LS LKR ++PT AYH V + V+ ++ L Y Sbjct 1962 KRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKY 2021 Query 1643 ERDGQRTYDDVNASL-------FVDYSNLLHSKVK--GVPNMHVVVVENDADKA--NFLN 1691 + + D ++++ F+ + +L +K ++N +V + ++ A + N Sbjct 2022 -KAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKN 2080 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AA++YAQ L +PIL++D+ L +V+ +++D + S++ VD +LN Sbjct 2081 AAIYYAQYLCKPILILDQALYEQLVVE-PVSKSVIDKVCSILSSIISVDTAALN------ 2133 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 K GT + D++LS ++ ++D + C + V + T+++ N++P Sbjct 2134 ---YKAGT----LRDALLSITKDEEAVDMAI--FCHNHDV--------DYTGDGFTNVIP 2176 Query 1812 TY-LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 1870 +Y + +++ + D G LI+ A + V + + V +W + +LS L A Sbjct 2177 SYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATV 2234 Query 1871 KTGLKL 1876 K+G+++ Sbjct 2235 KSGVRF 2240 Range 2: 1180 to 1370 Score:47.4 bits(160), Expect:0.001, Method:Compositional matrix adjust., Identities:50/209(24%), Positives:109/209(52%), Gaps:27/209(12%) Query 716 ILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDL 775 I LT DGV++ + + G+S+G+ +G+V+ K K+ F D++ ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYA--------------KNKIVFTADDVEDKEI 1224 Query 776 -------KAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 K++ + +D + + Y + L + KW+V + ++++ + + NC ++ + ++ Sbjct 1225 LYVPTTDKSILEYYGLDAQKYVIYLQTLAQ--KWNVQYRDNFLILEWRDGNCWISSAIVL 1282 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ--VD 886 LQ+ +++FK EAW + +G P+ FV+ A K GD +D+ +L + + D Sbjct 1283 LQAAKIRFKGFL-TEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDAD 1341 Query 887 LTGAICDFEIACKCGVKQEQRTGVDAVMH 915 T A+ ++C+CG+K + G++A ++ Sbjct 1342 YTNAFLKKRVSCNCGIKSYELRGLEACIQ 1370 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6V3.1 Length: 3951 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6V4.1 Length: 3951 Range 1: 1752 to 2240 Score:97.0 bits(349), Expect:1e-18, Method:Compositional matrix adjust., Identities:130/546(24%), Positives:264/546(48%), Gaps:76/546(13%) Query 1350 IIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVG 1409 ++AT++++WF + V+F+++ + + F ++ G + K +F ++ Sbjct 1752 VLATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVL------------ 1799 Query 1410 FKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ--YEADRRAFV-----DYTGVLKIVIEL 1462 +YC + + C+ CL + D L+ YK V+ Y +F+ Y L + + Sbjct 1800 ---RYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKP 1856 Query 1463 IVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYI 1522 + ++ + + + +++ +L T + L+W V+ + S N + A + ++ Sbjct 1857 VAGFVIIC--YCVKYLVLNSTVLQT------GVCFLDWFVQTVFSHFNFMGAGFYFWL-- 1906 Query 1523 IIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFC 1582 F K++I +H+ Y C C C + RS R S +VGG + +V +N+G FC Sbjct 1907 ----FYKIYIQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFC 1961 Query 1583 SKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY 1642 +H+W C +CD Y NTF++ E A +LS LKR ++PT AYH V + V+ ++ L Y Sbjct 1962 KRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKY 2021 Query 1643 ERDGQRTYDDVNASL-------FVDYSNLLHSKVK--GVPNMHVVVVENDADKA--NFLN 1691 + + D ++++ F+ + +L +K ++N +V + ++ A + N Sbjct 2022 -KAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKN 2080 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AA++YAQ L +PIL++D+ L +V+ +++D + S++ VD +LN Sbjct 2081 AAIYYAQYLCKPILILDQALYEQLVVE-PVSKSVIDKVCSILSSIISVDTAALN------ 2133 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 K GT + D++LS ++ ++D + C + V + T+++ N++P Sbjct 2134 ---YKAGT----LRDALLSITKDEEAVDMAI--FCHNHDV--------DYTGDGFTNVIP 2176 Query 1812 TY-LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 1870 +Y + +++ + D G LI+ A + V + + V +W + +LS L A Sbjct 2177 SYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATV 2234 Query 1871 KTGLKL 1876 K+G+++ Sbjct 2235 KSGVRF 2240 Range 2: 1180 to 1370 Score:48.2 bits(163), Expect:9e-04, Method:Compositional matrix adjust., Identities:50/209(24%), Positives:109/209(52%), Gaps:27/209(12%) Query 716 ILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDL 775 I LT DGV++ + + G+S+G+ +G+V+ K K+ F D++ ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYA--------------KNKIVFTADDVEDKEI 1224 Query 776 -------KAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLM 828 K++ + +D + + Y + L + KW+V + ++++ + + NC ++ + ++ Sbjct 1225 LYVPTTDKSILEYYGLDAQKYVIYLQTLAQ--KWNVQYRDNFLILEWRDGNCWISSAIVL 1282 Query 829 LQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ--VD 886 LQ+ +++FK EAW + +G P+ FV+ A K GD +D+ +L + + D Sbjct 1283 LQAAKIRFKGFL-TEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDAD 1341 Query 887 LTGAICDFEIACKCGVKQEQRTGVDAVMH 915 T A+ ++C+CG+K + G++A ++ Sbjct 1342 YTNAFLKKRVSCNCGIKSYELRGLEACIQ 1370 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6V5.1 Length: 3953 Range 1: 1754 to 2226 Score:96.8 bits(348), Expect:1e-18, Method:Compositional matrix adjust., Identities:127/530(24%), Positives:258/530(48%), Gaps:76/530(14%) Query 1350 IIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVG 1409 ++AT++++WF + V+F+++ + + F ++ G + K +F ++ Sbjct 1754 VFATLLIVWFIYTSNPVVFTGIRVLDFLFEGSLCGPYNDYGKDSFDVL------------ 1801 Query 1410 FKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ--YEADRRAFV-----DYTGVLKIVIEL 1462 +YC G ++C+ CL + D L+ YK V+ Y ++ Y L + + Sbjct 1802 ---RYCAGDFTCRVCLHDRDSLHLYKHAYSVEQIYKDAASGINFNWNWLYLVFLILFVKP 1858 Query 1463 IVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYI 1522 + ++ + + + ++S +L T ++ L+W V+ + + N + A + ++ Sbjct 1859 VAGFVIIC--YCVKYLVLSSTVLQT------GVGFLDWFVKTVFTHFNFMGAGFYFWL-- 1908 Query 1523 IIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFC 1582 F K+++ +H+ Y C C C + RS R S +VGG + +V +N+G FC Sbjct 1909 ----FYKIYVQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFC 1963 Query 1583 SKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY 1642 +H+W C +CD Y NTF++ E A +LS LKR ++PT AYH V + V+ ++ L Y Sbjct 1964 KRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKY 2023 Query 1643 ERDGQRTYDDVNASL-------FVDYSNLLHSKVK--GVPNMHVVVVENDADKA--NFLN 1691 + + D+ ++++ F+ + +L +K ++N +V + ++ A + N Sbjct 2024 -KAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKN 2082 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 AAV+YAQ L +PIL++D+ L +V+ +++D + +++ VD +LN Sbjct 2083 AAVYYAQYLCKPILILDQALYEQLIVE-PVSKSVIDKVCSILSNIISVDTAALN------ 2135 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 K GT + D++LS ++ ++D + C + V E T+++ N++P Sbjct 2136 ---YKAGT----LRDALLSITKDEEAVDMAI--FCHNHEV--------EYTGDGFTNVIP 2178 Query 1812 TY-LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSD 1860 +Y + D++ + D G LI+ A + V + + V +W + +LS Sbjct 2179 SYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDS 2226 Range 2: 1182 to 1372 Score:48.4 bits(164), Expect:7e-04, Method:Compositional matrix adjust., Identities:52/202(26%), Positives:109/202(53%), Gaps:13/202(6%) Query 716 ILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDL 775 I LT DGV++ + + G+S+G+ +G+VF V D++ K +F+ + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVFARNKVVFSAD-DVEDKEILFIPTTD------ 1233 Query 776 KAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLK 835 K++ + +D + ++Y + L + KW+V + +++ + + NC ++ + ++LQ+ +++ Sbjct 1234 KTILEYYGLDAQKYVTYLQTLAQ--KWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 836 FKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQ--VDLTGAICD 893 FK EAW + +G P+ FV+ A K GD +D+ +L + + D T A+ Sbjct 1292 FKGFL-AEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 894 FEIACKCGVKQEQRTGVDAVMH 915 ++C+CGVK + G++A ++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQ 1372 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 2065 to 2530 Score:92.3 bits(331), Expect:3e-17, Method:Compositional matrix adjust., Identities:129/510(25%), Positives:261/510(51%), Gaps:51/510(10%) Query 1397 VTICDLYS--IQDVGF-KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYT 1453 IC Y+ + F KN+YC G++ C++CL G++ L ++ V+ ++ + D Sbjct 2065 TPICKRYTDGYANSTFDKNDYC-GNVLCKICLYGYEELSDFTHTRVI-----WQHLKD-- 2116 Query 1454 GVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLP 1513 ++ ++ L+ Y ++ F +F I+I + + + + + + + + V L ++LP Sbjct 2117 PLIGNILPLF--YLVFLIIFGGFFVRIGITYF---IMQYINAAGVALGYQDNVWLLHLLP 2171 Query 1514 AHVFMRFYIIIASFI--KLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 1571 + II+ +FI +++++++HV +GC KP+C+ C K + RV TI+ G+ + + Sbjct 2172 FNSMGN--IIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSF 2229 Query 1572 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 1631 V ANGG FC KH+ C+DCDSY G TFI A +LS+ K + PT+ A + V Sbjct 2230 YVNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKV 2289 Query 1632 KQVGCYMRLFYERDGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFL 1690 + L Y + Y+ D+ + + ++L K + VV +++++ ++ Sbjct 2290 EFSNGFYYL-YSGSTFWKYNFDITEAKY-ACKDVL--KNCNILTDFVVFNNSGSNVTQVK 2345 Query 1691 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 1750 NA V+++Q L +PI +VD L+++ N + + + +V+ + + F+ K L+ Sbjct 2346 NACVYFSQLLCKPIKLVDSALLASLNVD--FSANLHKAFVEVLSNSFG---KDLSN---- 2396 Query 1751 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 1810 C ++ C R S ++ SDV ++ +V A ++ ++D S NNL+ Sbjct 2397 -----------CSNMN---EC-RESLGL-SDVPEEEFSAAVSEAHRYDVLISDVSFNNLI 2440 Query 1811 PTYLKGDNIVAA-DLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 1869 +Y K ++ +A D++ ++ +AK V+ NV V+ +W F LS + + + ++ Sbjct 2441 VSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTT 2500 Query 1870 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 G+++ LT+N + ++++ T + + K G Sbjct 2501 KTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1318 to 1437 Score:46.6 bits(157), Expect:0.003, Method:Compositional matrix adjust., Identities:44/128(34%), Positives:76/128(59%), Gaps:12/128(9%) Query 440 VKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL- 498 V+ + VVN+AN +++HGGG+AKA+ +++ K +++ ++ V G V++G + Sbjct 1318 VNHDFVVNAANEQLSHGGGIAKAL-----DDLTKGELQVLSNQYVSRNGSIKVGSGVLIK 1372 Query 499 CK--TVLNVVGPDARTQGKQSYALLERVYKHLNKYDCV-VTTLISAGIFSVPSDVSLTYL 555 CK ++LNVVGP +GK++ LL + Y + K V + L+S GIF VP SL+ + Sbjct 1373 CKEHSILNVVGP---RKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAF 1429 Query 556 LGTAEKQV 563 L+ +V Sbjct 1430 LACVGDRV 1437 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6V2.1 Length: 4017 Range 1: 1935 to 2366 Score:91.8 bits(329), Expect:4e-17, Method:Compositional matrix adjust., Identities:126/480(26%), Positives:240/480(50%), Gaps:57/480(11%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVV-QYEAD----RRAFVDYTGVLKI-VIELIV 1464 K+ C SI C+ CLA++D L +++ ++V ++ +D R + Y + L + + + Sbjct 1935 KSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVR 1994 Query 1465 SYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIII 1524 + +Y + Q L WL+ F W +++ V++ ++ + ++I+ Sbjct 1995 CFLMY----------FVSQYLNLWLS-YFGYVEYSWFLHV-VNFESISAE------FVIV 2036 Query 1525 ASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSK 1584 +K + ++H+ ++CS+P+C C + R R+ +V G ++ V ANG FC K Sbjct 2037 VIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKK 2096 Query 1585 HQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYER 1644 H+ C +CDSY NTFI E DLS+ +K+ + +TD + + VT V + + R FY Sbjct 2097 HNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYR-FYVG 2155 Query 1645 DGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRP 1703 D +YD DV+ + ++L S + + + +V +++ AN NA V+++Q + +P Sbjct 2156 DEFTSYDYDVKHKKYSS-QEVLKSML--LLDDFIVYSPSGSALANVRNACVYFSQLIGKP 2212 Query 1704 ILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICK 1763 I +V+ +L+ + + ++F+ + + + F+VD CK Sbjct 2213 IKIVNSDLL--EDLSVDFKGALFNAKKNVIKNSFNVDVSE------------------CK 2252 Query 1764 VLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLK--GDNIVA 1821 LD C R +C+++ T + +V +A G+ +TD S NN+ P+ +K + + A Sbjct 2253 NLD---ECYR-ACNLNVSFST--FEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSA 2306 Query 1822 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN 1881 D+G + + AK V+++V G S +W + F LSS Q L K+ G+++ LT+N Sbjct 2307 MDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFN 2366 Range 2: 1328 to 1541 Score:55.5 bits(191), Expect:4e-06, Method:Compositional matrix adjust., Identities:63/221(29%), Positives:123/221(55%), Gaps:20/221(9%) Query 423 TPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSK 482 + ++ F +G + + + + ++V+VN+ANG++ H GGVA+AI V +G ++ + D +K + Sbjct 1328 AGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKN 1387 Query 483 GVCATGDC--YVSTGGKLCKTVLNVVGP---DARTQGKQSYALLERVYKHLNKYDC-VVT 536 A G+ + + L +VLN VGP D+R ++K L VYK + K + ++T Sbjct 1388 KSIAPGNAVFFENVIEHL--SVLNAVGPRNGDSRVEAK-----LCNVYKAIAKCEGKILT 1440 Query 537 TLISAGIFSVPSDVSLTYLLGTAEKQVVLV----SNNQEDFDLISKCQITAVEGTKKLA- 591 LIS GIF+V + SL LL T + + + V ++++ ++ + C I ++ Sbjct 1441 PLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNH 1500 Query 592 ERLSFNVGRSIVYETDANKLILSNDVA--FVSTFNVLQDVL 630 ER+S + +++ + + +I +DV+ + S+F+V Q V+ Sbjct 1501 ERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI 1541 Range 3: 1569 to 1662 Score:45.3 bits(152), Expect:0.006, Method:Compositional matrix adjust., Identities:29/97(30%), Positives:56/97(57%), Gaps:3/97(3%) Query 801 KWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLV 860 K +VV +++++ KQ++NNC +N CL LQ L+ + K+ + W EF + FV ++ Sbjct 1569 KFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHML 1628 Query 861 LAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIA 897 +G K G+P+D+ L+ + DL + C++ ++ Sbjct 1629 YHISGVKKGEPGDAELMLHKL---GDLMDNDCEIIVT 1662 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512] Sequence ID: P0C6F6.1 Length: 4128 Range 1: 2066 to 2530 Score:91.8 bits(329), Expect:4e-17, Method:Compositional matrix adjust., Identities:130/509(26%), Positives:261/509(51%), Gaps:51/509(10%) Query 1398 TICDLYS--IQDVGF-KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTG 1454 IC Y+ + F KN+YC G++ C++CL G++ L ++ V+ ++ + D Sbjct 2066 PICKRYTDGYANSTFDKNDYC-GNVLCKICLYGYEELSDFTHTRVI-----WQHLKD--P 2117 Query 1455 VLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPA 1514 ++ ++ L+ Y ++ F +F I+I T + + + + + + + V L ++LP Sbjct 2118 LIGNILPLF--YLVFLIIFGGFFVRIGI---TYFIMQYINAAGVALGYQDNVWLLHLLPF 2172 Query 1515 HVFMRFYIIIASFI--KLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYD 1572 + II+ +FI +++++++HV +GC KP+C+ C K + RV TI+ G+ + + Sbjct 2173 NSMGN--IIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFY 2230 Query 1573 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 1632 V ANGG FC KH+ C+DCDSY G TFI A +LS+ K + PT+ A + V Sbjct 2231 VNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVE 2290 Query 1633 QVGCYMRLFYERDGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLN 1691 + L Y + Y+ D+ + + ++L K + VV +++++ ++ N Sbjct 2291 FSNGFYYL-YSGSTFWKYNFDITEAKY-ACKDVL--KNCNILTDFVVFNNSGSNVTQVKN 2346 Query 1692 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 1751 A V+++Q L +PI +VD L+++ N + + + +V+ + + F+ K L+ Sbjct 2347 ACVYFSQLLCKPIKLVDSALLASLNVD--FSANLHKAFVEVLSNSFG---KDLSN----- 2396 Query 1752 HSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 1811 C ++ C R S ++ SDV ++ +V A ++ ++D S NNL+ Sbjct 2397 ----------CSNMN---EC-RESLGL-SDVPEEEFSAAVSEAHRYDVLISDVSFNNLIV 2441 Query 1812 TYLKGDNIVAA-DLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 1870 +Y K ++ +A D++ ++ +AK V+ NV V+ +W F LS + + + ++ Sbjct 2442 SYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTK 2501 Query 1871 KTGLKLKLTYNKQMANVSVLTTPFSLKGG 1899 G+++ LT+N + ++++ T + + K G Sbjct 2502 TKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1317 to 1437 Score:46.6 bits(157), Expect:0.002, Method:Compositional matrix adjust., Identities:44/129(34%), Positives:76/129(58%), Gaps:12/129(9%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 V+ + VVN+AN +++HGGG+AKA+ +++ K +++ ++ V G V++G + Sbjct 1317 SVNHDFVVNAANEQLSHGGGIAKAL-----DDLTKGELQVLSNQYVSRNGSIKVGSGVLI 1371 Query 499 -CK--TVLNVVGPDARTQGKQSYALLERVYKHLNKYDCV-VTTLISAGIFSVPSDVSLTY 554 CK ++LNVVGP +GK++ LL + Y + K V + L+S GIF VP SL+ Sbjct 1372 KCKEHSILNVVGP---RKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAA 1428 Query 555 LLGTAEKQV 563 +L+ +V Sbjct 1429 FLACVGDRV 1437 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 1935 to 2366 Score:91.8 bits(329), Expect:4e-17, Method:Compositional matrix adjust., Identities:126/480(26%), Positives:240/480(50%), Gaps:57/480(11%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVV-QYEAD----RRAFVDYTGVLKI-VIELIV 1464 K+ C SI C+ CLA++D L +++ ++V ++ +D R + Y + L + + + Sbjct 1935 KSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVR 1994 Query 1465 SYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIII 1524 + +Y + Q L WL+ F W +++ V++ ++ + ++I+ Sbjct 1995 CFLMY----------FVSQYLNLWLS-YFGYVEYSWFLHV-VNFESISAE------FVIV 2036 Query 1525 ASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSK 1584 +K + ++H+ ++CS+P+C C + R R+ +V G ++ V ANG FC K Sbjct 2037 VIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKK 2096 Query 1585 HQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYER 1644 H+ C +CDSY NTFI E DLS+ +K+ + +TD + + VT V + + R FY Sbjct 2097 HNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYR-FYVG 2155 Query 1645 DGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRP 1703 D +YD DV+ + ++L S + + + +V +++ AN NA V+++Q + +P Sbjct 2156 DEFTSYDYDVKHKKYSS-QEVLKSML--LLDDFIVYSPSGSALANVRNACVYFSQLIGKP 2212 Query 1704 ILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICK 1763 I +V+ +L+ + + ++F+ + + + F+VD CK Sbjct 2213 IKIVNSDLL--EDLSVDFKGALFNAKKNVIKNSFNVD------------------VSECK 2252 Query 1764 VLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLK--GDNIVA 1821 LD C R +C+++ T + +V +A G+ +TD S NN+ P+ +K + + A Sbjct 2253 NLD---ECYR-ACNLNVSFST--FEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSA 2306 Query 1822 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN 1881 D+G + + AK V+++V G S +W + F LSS Q L K+ G+++ LT+N Sbjct 2307 MDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFN 2366 Range 2: 1328 to 1541 Score:55.8 bits(192), Expect:4e-06, Method:Compositional matrix adjust., Identities:63/221(29%), Positives:122/221(55%), Gaps:20/221(9%) Query 423 TPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSK 482 + ++ F +G + + + + ++V+VN+ANG++ H GGVA+AI V +G ++ + D +K + Sbjct 1328 AGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKN 1387 Query 483 GVCATGDC--YVSTGGKLCKTVLNVVGP---DARTQGKQSYALLERVYKHLNKYDC-VVT 536 A G+ + + L +VLN VGP D+R ++K L VYK + K + ++T Sbjct 1388 KSIAPGNAVFFENVIEHL--SVLNAVGPRNGDSRVEAK-----LCNVYKAIAKCEGKILT 1440 Query 537 TLISAGIFSVPSDVSLTYLLGTAEKQV----VLVSNNQEDFDLISKCQITAVEGTKKLA- 591 LIS GIF+V + SL LL T + + V ++++ ++ + C I ++ Sbjct 1441 PLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNH 1500 Query 592 ERLSFNVGRSIVYETDANKLILSNDVA--FVSTFNVLQDVL 630 ER+S + +++ + + +I +DV+ + S+F+V Q V+ Sbjct 1501 ERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI 1541 Range 3: 1569 to 1662 Score:45.0 bits(151), Expect:0.007, Method:Compositional matrix adjust., Identities:29/97(30%), Positives:56/97(57%), Gaps:3/97(3%) Query 801 KWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLV 860 K +VV +++++ KQ++NNC +N CL LQ L+ + K+ + W EF + FV ++ Sbjct 1569 KFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHML 1628 Query 861 LAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIA 897 +G K G+P+D+ L+ + DL + C++ ++ Sbjct 1629 YHISGVKKGEPGDAELMLHKL---GDLMDNDCEIIVT 1662 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 2068 to 2516 Score:89.9 bits(322), Expect:1e-16, Method:Compositional matrix adjust., Identities:124/496(25%), Positives:248/496(50%), Gaps:54/496(10%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 KN+YCN S+ C+ CL G++ L ++ +VV + +I ++++ +Y Sbjct 2068 KNEYCN-SVICKVCLYGYQELSDFSHTQVV-----------WQHLRDPLIGNVMPF-FYL 2114 Query 1471 AWFYPLFALISIQILT-----TWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIA 1525 A F ++F+ + ++ +T L L ++ L+ S+++L ++ + ++ ++ F+I+ Sbjct 2115 A-FLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVT- 2172 Query 1526 SFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKH 1585 +++++++HV GC K++C+ C K R RV TI G + + V ANGG+ FC KH Sbjct 2173 ---RVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKH 2229 Query 1586 QWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERD 1645 + C++CDSY PG TFI A ++++ +K +QPT+ A + V + L Y D Sbjct 2230 NFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYL-YSGD 2288 Query 1646 GQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPI 1704 + Y+ D+ S + L + + + + +V +N+++ + NA V+++Q L +P+ Sbjct 2289 TFWKYNFDITDSKYTCKEALKNCSI--ITDF-IVFNNNGSNVNQVKNACVYFSQMLCKPV 2345 Query 1705 LMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKV 1764 +VD L+ A+ + ++ +V + + F+ D S N + Q CK Sbjct 2346 KLVDSALL--ASLSVDFGASLHSAFVSVLSNSFGKDLSSCNDM------------QDCKS 2391 Query 1765 LDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN-IVAAD 1823 F DV + +V A ++ LTD S NN+ +Y K ++ + D Sbjct 2392 TLGF-----------DDVPLDTFNAAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKFPVHD 2440 Query 1824 LGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQ 1883 ++ ++ +AK V+ NV +++ +W V F LS + + + ++ G+ + LT+N Sbjct 2441 IATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDC 2500 Query 1884 MANVSVLTTPFSLKGG 1899 + ++ T ++ K G Sbjct 2501 RMHTTIPTVCIANKKG 2516 Range 2: 1301 to 1431 Score:48.2 bits(163), Expect:8e-04, Method:Compositional matrix adjust., Identities:49/137(36%), Positives:81/137(59%), Gaps:8/137(5%) Query 428 FVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCAT 487 F +GD+ + K + + VVN+AN ++HGGG+AKAI V + + K + D +K+ G Sbjct 1301 FYQGDFSDLVK-LPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKV 1359 Query 488 GDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHL-NKYDCVVTTLISAGIFSV 546 G + + L V+NVVGP +GK++ LL + YK + + + +T LIS GIFSV Sbjct 1360 GRGVMLEALGL--KVFNVVGP---RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSV 1414 Query 547 PSDVSLT-YLLGTAEKQ 562 P + SL+ +L ++++ Sbjct 1415 PLEESLSAFLACVGDRH 1431 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 2068 to 2516 Score:89.7 bits(321), Expect:2e-16, Method:Compositional matrix adjust., Identities:128/500(26%), Positives:251/500(50%), Gaps:62/500(12%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYT 1470 KN+YCN S+ C+ CL G++ L ++ +VV + R + +I ++++ +Y Sbjct 2068 KNEYCN-SVICKVCLYGYQELSDFSHTQVV-WQHLRDP----------LIGNVMPF-FYL 2114 Query 1471 AWFYPLFALISIQILT-----TWLPELFMLSTLHWSVRLLVSLANMLPAHVF----MRFY 1521 A F ++F+ + ++ +T L L ++ L+ S+++L +++P +VF + F+ Sbjct 2115 A-FLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQSIWFL----QLVPFDVFGDEIVVFF 2169 Query 1522 IIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGF 1581 I+ +++++++HV GC K++C+ C K R RV TI G + + V ANGG+ F Sbjct 2170 IVT----RVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKF 2225 Query 1582 CSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLF 1641 C KH+ C++CDSY PG TFI A ++++ +K +QPT+ A + V + L Sbjct 2226 CKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYL- 2284 Query 1642 YERDGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSL 1700 Y D + Y+ D+ S + L + + + + +V +N+++ + NA V+++Q L Sbjct 2285 YSGDTFWKYNFDITDSKYTCKEALKNCSI--ITDF-IVFNNNGSNVNQVKNACVYFSQML 2341 Query 1701 FRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQ 1760 +P+ +VD L+ A+ + ++ +V + + F+ D S N + Q Sbjct 2342 CKPVKLVDSALL--ASLSVDFGASLHSAFVSVLSNSFGKDLSSCNDM------------Q 2387 Query 1761 ICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN-I 1819 CK F DV + +V A ++ LTD S NN+ +Y K ++ + Sbjct 2388 DCKSTLGF-----------DDVPLDTFNAAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKF 2436 Query 1820 VAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLT 1879 D++ ++ +AK V+ NV +++ +W V F LS + + + ++ G+ + LT Sbjct 2437 PVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLT 2496 Query 1880 YNKQMANVSVLTTPFSLKGG 1899 +N + ++ T ++ K G Sbjct 2497 FNDCRMHTTIPTVCIANKKG 2516 Range 2: 1311 to 1431 Score:47.9 bits(162), Expect:9e-04, Method:Compositional matrix adjust., Identities:45/126(36%), Positives:75/126(59%), Gaps:7/126(5%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ + VVN+AN ++HGGG+AKAI V + + K + D +K+ G G + + L Sbjct 1311 KLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGL 1370 Query 499 CKTVLNVVGPDARTQGKQSYALLERVYKHL-NKYDCVVTTLISAGIFSVPSDVSLT-YLL 556 V+NVVGP +GK++ LL + YK + + + +T LIS GIFSVP + SL+ +L Sbjct 1371 --KVFNVVGP---RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLA 1425 Query 557 GTAEKQ 562 ++++ Sbjct 1426 CVGDRH 1431 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 1960 to 2391 Score:81.5 bits(290), Expect:6e-14, Method:Compositional matrix adjust., Identities:130/480(27%), Positives:238/480(49%), Gaps:57/480(11%) Query 1411 KNQYCNGSIACQFCLAGFDMLDNYKAIDVV-QYEADRRAFVDYTGVLKIVIELIVSYALY 1469 K++ C SI C+ CLA++D L ++ ++V +Y +D + + VI+L SY ++ Sbjct 1960 KSEVCGNSILCKACLASYDELADFDHLQVSWDYKSDP--------LWNRVIQL--SYFIF 2009 Query 1470 TAWF---YP--LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIII 1524 A F Y L+ + Q L WL+ F W +++ V++ ++ +II Sbjct 2010 LAVFGNNYVRCLLMYFVSQYLNLWLS-YFGYVKYSWFLHV-VNFESISVEF------VII 2061 Query 1525 ASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSK 1584 +K + ++H+ C++P+C C K R R+ +V G ++ V ANG +C K Sbjct 2062 VVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKK 2121 Query 1585 HQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYER 1644 H+ C +CDSY ++TFI E DLS+ +K+ + +TD +Y+ VT V + + R FY Sbjct 2122 HNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYR-FYVG 2180 Query 1645 DGQRTYD-DVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRP 1703 + +YD DV+ YS+ K + + +V +++ A+ N V+++Q + RP Sbjct 2181 EEFTAYDYDVKHK---KYSSQEVLKTMFLLDDFIVYNPSGSSLASVRNVCVYFSQLIGRP 2237 Query 1704 ILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICK 1763 I +V+ +L+ + + ++F+ + + + F+VD CK Sbjct 2238 IKIVNSELL--EDLSVDFKGALFNAKKNVIKNSFNVD------------------VSECK 2277 Query 1764 VLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLK--GDNIVA 1821 L+ C K C++D T + ++ +A G+ +TD S NN+ P+ +K + + A Sbjct 2278 NLE---ECY-KLCNLDVTFST--FEMAINNAHRFGILITDRSFNNFWPSKIKPGSSGVSA 2331 Query 1822 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN 1881 D+G + AK V+++V G S +W + F+ LSS Q L K+ G+++ LT+N Sbjct 2332 MDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFN 2391 Range 2: 1339 to 1488 Score:57.4 bits(198), Expect:1e-06, Method:Compositional matrix adjust., Identities:59/157(38%), Positives:96/157(61%), Gaps:15/157(9%) Query 423 TPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSK 482 + +V F +GD+ + + + ++V+VN+ANG++ H GGVA+AI V +G ++ K + + +KS Sbjct 1339 AGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSS 1398 Query 483 GVCATGDC--YVSTGGKLCKTVLNVVGP---DARTQGKQSYALLERVYKHLNKYDC-VVT 536 A G+ + + L +VLN VGP D+R +GK L VYK + K D ++T Sbjct 1399 KAIAPGNAVLFENVLEHL--SVLNAVGPRNGDSRVEGK-----LCNVYKAIAKCDGKILT 1451 Query 537 TLISAGIFSVPSDVSLTYLLGT-AEKQV-VLVSNNQE 571 LIS GIF V +VSL LL T +++++ V+V +QE Sbjct 1452 PLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQE 1488 >RecName: Full=Uncharacterized protein TM_0508 [Thermotoga maritima MSB8] Sequence ID: Q9WYX8.1 Length: 599 Range 1: 428 to 555 Score:52.6 bits(180), Expect:1e-05, Method:Compositional matrix adjust., Identities:47/134(35%), Positives:74/134(55%), Gaps:15/134(11%) Query 425 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 484 ++ +VKGDI R + +VN+AN + HGGGVA AI A+G + E+ +V+ +G Sbjct 428 KIRIVKGDIT----REEVDAIVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGR 483 Query 485 CATGDCYVSTGGKL-CKTVLNVVGP--DARTQG------KQSYALLERVYKHLNKYDCVV 535 +TG+ V+++GKL K V++ VGP + ++G K Y L R H K + Sbjct 484 VPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRA--HELKLKSIS 541 Query 536 TTLISAGIFSVPSD 549 IS+GIF+ P + Sbjct 542 MPAISTGIFGFPKE 555 >RecName: Full=O-acetyl-ADP-ribose deacetylase 1; AltName: Full=Regulator of RNase III activity 1 [Pantoea vagans C9-1] Sequence ID: E1SDF1.1 Length: 171 Range 1: 3 to 156 Score:43.2 bits(144), Expect:8e-04, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:90/160(56%), Gaps:14/160(8%) Query 425 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 484 ++ ++GDI KVS AE +VN+AN+ + GGGV AI A+G ++ E + + +G Sbjct 3 KITVIQGDITKVS----AEAIVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQGG 58 Query 485 CATGDCYVSTGGKLCKT-VLNVVGPDARTQGKQSY-ALLERVYK---HLNKYDCVVT--- 536 C GD ++ +G+L V++ VGP +++G++ ALL R Y+ L Y+ + T Sbjct 59 CKVGDAVITGAGNLPADYVIHTVGPR-WSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSF 117 Query 537 TLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 576 IS+GI++ P + + T L+ K+ + + E+ +L+ Sbjct 118 PNISTGIYGFPKERAATIALDVI-KHCIAENRTLENVNLV 156 >RecName: Full=Macro domain-containing protein LA_4133 [Leptospira interrogans serovar Lai str. 56601] Sequence ID: Q8EYT0.1 Length: 175 Range 1: 1 to 131 Score:43.2 bits(144), Expect:8e-04, Method:Compositional matrix adjust., Identities:39/135(29%), Positives:72/135(53%), Gaps:11/135(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + ++ ++K DI ++ + +VN+AN+ + GGGV AI A+G +++ E + Sbjct 1 MNNKIKLIKEDIT----QLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH---LNKYDCVVT- 536 +G C G+ ++T+G+L K +++ VGP K+ LL YK+ L K + + T Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 537 --TLISAGIFSVPSD 549 IS+GI+ P + Sbjct 117 AFPNISTGIYHFPKE 131 >RecName: Full=Macro domain-containing protein LIC_13295 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Sequence ID: Q72M93.1 Length: 175 Range 1: 1 to 131 Score:43.2 bits(144), Expect:0.001, Method:Compositional matrix adjust., Identities:39/135(29%), Positives:72/135(53%), Gaps:11/135(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + ++ ++K DI ++ + +VN+AN+ + GGGV AI A+G +++ E + Sbjct 1 MNNKIKLIKEDIT----QLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH---LNKYDCVVT- 536 +G C G+ ++T+G+L K +++ VGP K+ LL YK+ L K + + T Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 537 --TLISAGIFSVPSD 549 IS+GI+ P + Sbjct 117 AFPNISTGIYHFPKE 131 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP14; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 8; Short=ARTD8; AltName: Full=Collaborator of STAT6; Short=CoaSt6; AltName: Full=Poly [ADP-ribose] polymerase 14; Short=PARP-14 [Mus musculus] Sequence ID: Q2EMV9.3 Length: 1817 Range 1: 824 to 955 Score:47.4 bits(160), Expect:0.001, Method:Compositional matrix adjust., Identities:38/132(29%), Positives:75/132(56%), Gaps:8/132(6%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 R +VVVN+AN ++ H +G+A+A++ AAG ++ E ++VK GV G+ +S +GKL Sbjct 824 RFPVDVVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISKAGKL 883 Query 499 -CKTVLNVVGPD-ARTQGKQSYALLERVYKHL------NKYDCVVTTLISAGIFSVPSDV 550 C V++ VGP + + +LL +V ++ ++ + +SAGIF P ++ Sbjct 884 PCHHVIHAVGPRWKGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAMPAVSAGIFDFPLEL 943 Query 551 SLTYLLGTAEKQ 562 ++ ++++ + Sbjct 944 CVANIVSAIKEH 955 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Citrobacter rodentium ICC168] Sequence ID: D2TT52.2 Length: 177 Range 1: 1 to 155 Score:42.1 bits(140), Expect:0.002, Method:Composition-based stats., Identities:38/159(24%), Positives:80/159(50%), Gaps:11/159(6%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + + + + GDI V+ + +VN+AN + GGGV AI AAG +++ + + Sbjct 1 MNSRIHVIHGDITTVA----VDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQ 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCV 534 +G C+ G+ ++++G+L K+V++ VGP R + LL+ Y + N Y+ + Sbjct 57 QGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSI 116 Query 535 VTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDF 573 IS+G+++ P + + T + ++ ++ + Sbjct 117 AFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIY 155 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Cronobacter turicensis z3032] Sequence ID: C9Y0V8.1 Length: 176 Range 1: 14 to 169 Score:42.1 bits(140), Expect:0.002, Method:Composition-based stats., Identities:45/156(29%), Positives:77/156(49%), Gaps:16/156(10%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 R+ ++V+VN+AN + GGGV AI AAG ++ + + +G C G+ ++ +G L Sbjct 14 RIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQQGECQPGHAVITEAGDL 73 Query 499 -CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCVVTTLISAGIFSVPSDVS 551 K+V++ VGP R + LL Y++ N Y+ V IS+GI++ P + Sbjct 74 AAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSVAFPAISTGIYGYPKAAA 133 Query 552 LTYLLGTAE---------KQVVLVSNNQEDFDLISK 578 + T KQV +V ++E+F L + Sbjct 134 AQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQR 169 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Sequence ID: P67341.1 Length: 179 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Typhi] Sequence ID: P67342.1 Length: 179 Range 1: 14 to 129 Score:41.9 bits(139), Expect:0.003, Method:Composition-based stats., Identities:36/116(31%), Positives:63/116(54%), Gaps:7/116(6%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ + +VN+AN+ + GGGV AI AAG ++ + + +G C TG+ ++ +GKL Sbjct 14 QLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKL 73 Query 499 C-KTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCVVTTLISAGIFSVP 547 K+V++ VGP R Q LLE Y++ N + + IS+G+++ P Sbjct 74 SAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYP 129 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Newport str. SL254] Sequence ID: B4T2X8.1 Length: 179 Range 1: 14 to 129 Score:41.9 bits(139), Expect:0.003, Method:Composition-based stats., Identities:36/116(31%), Positives:63/116(54%), Gaps:7/116(6%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ + +VN+AN+ + GGGV AI AAG ++ + + +G C TG+ ++ +GKL Sbjct 14 QLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKL 73 Query 499 C-KTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCVVTTLISAGIFSVP 547 K+V++ VGP R Q LLE Y++ N + + IS+G+++ P Sbjct 74 SAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYP 129 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia fergusonii ATCC 35469] Sequence ID: B7LT90.2 Length: 177 Range 1: 14 to 133 Score:41.6 bits(138), Expect:0.003, Method:Composition-based stats., Identities:34/120(28%), Positives:66/120(55%), Gaps:7/120(5%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ +V+VN+AN+ + GGGV AI AAG +++ + + +G C+TG+ ++ +G+L Sbjct 14 QLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNL 73 Query 499 -CKTVLNVVGPDARTQGKQSYALLERVY------KHLNKYDCVVTTLISAGIFSVPSDVS 551 ++V++ VGP R + LL+ Y + N Y + IS+G+++ P + Sbjct 74 PARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAA 133 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Enterobacter cloacae subsp. cloacae ATCC 13047] Sequence ID: D5CE05.1 Length: 180 Range 1: 1 to 147 Score:41.6 bits(138), Expect:0.003, Method:Composition-based stats., Identities:41/151(27%), Positives:81/151(53%), Gaps:11/151(7%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + P++ + GDI + +V+VN+AN + GGGV AI AAG Q++ + + Sbjct 1 MKPQIDVIHGDITTM----HVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQ 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCV 534 +G C+ G+ ++ +G L K+V++ VGP + +++ ++LE Y++ N Y + Sbjct 57 QGECPPGHAVITLAGDLPAKAVIHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTM 116 Query 535 VTTLISAGIFSVPSDVSLTYLLGTAEKQVVL 565 IS+G+++ P + T ++T + + L Sbjct 117 AFPAISTGVYGYPKAAAATIAVDTVYRYLSL 147 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Sequence ID: B5RBF3.1 Length: 179 Range 1: 14 to 129 Score:41.6 bits(138), Expect:0.004, Method:Composition-based stats., Identities:36/116(31%), Positives:63/116(54%), Gaps:7/116(6%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ + +VN+AN+ + GGGV AI AAG ++ + + +G C TG+ ++ +GKL Sbjct 14 QLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKL 73 Query 499 C-KTVLNVVGPDARTQGKQSYALLERVYK------HLNKYDCVVTTLISAGIFSVP 547 K+V++ VGP R Q LLE Y+ + N + + IS+G+++ P Sbjct 74 SAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSIAFPAISTGVYGYP 129 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Cronobacter sakazakii ATCC BAA-894] Sequence ID: A7MG20.1 Length: 180 Range 1: 15 to 169 Score:41.6 bits(138), Expect:0.004, Method:Composition-based stats., Identities:44/155(28%), Positives:76/155(49%), Gaps:16/155(10%) Query 440 VKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL- 498 + +V+VN+AN + GGGV AI AAG ++ ++ + +G C G+ ++ +G L Sbjct 15 IDVDVIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQQGECQPGHAVITEAGDLA 74 Query 499 CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCVVTTLISAGIFSVPSDVSL 552 K+V++ VGP R + LL Y++ N Y+ V IS+GI++ P + Sbjct 75 AKAVVHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSVAFPAISTGIYGYPKAAAA 134 Query 553 TYLLGTAE---------KQVVLVSNNQEDFDLISK 578 + T KQV +V ++E+F L + Sbjct 135 QIAFETVSDYLTRHPQPKQVYFVCYDEENFLLYQR 169 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Agona str. SL483] Sequence ID: B5F961.1 Length: 179 Range 1: 14 to 129 Score:40.0 bits(132), Expect:0.012, Method:Composition-based stats., Identities:36/116(31%), Positives:63/116(54%), Gaps:7/116(6%) Query 439 RVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKL 498 ++ + +VN+AN+ + GGGV AI AAG ++ + + +G C TG+ ++ +GKL Sbjct 14 QLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKL 73 Query 499 C-KTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCVVTTLISAGIFSVP 547 K+V++ VGP R Q LLE Y++ N + + IS+G+++ P Sbjct 74 SAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSIAFPAISTGVYGYP 129 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Shigella flexneri 5 str. 8401] Sequence ID: Q0T5Z6.1 Length: 177 Range 1: 1 to 133 Score:39.8 bits(131), Expect:0.015, Method:Composition-based stats., Identities:42/137(31%), Positives:72/137(52%), Gaps:11/137(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + + V+GDI K++ +V+VN+AN + GGGV AI AAG ++ + + Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCV 534 +G C+TG+ ++ +G L K+V++ VGP R ++ LL+ Y + N Y V Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 535 VTTLISAGIFSVPSDVS 551 IS+G++S P + Sbjct 117 AFPAISTGVYSYPRAAA 133 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli K-12] Sequence ID: P0A8D6.1 Length: 177 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli CFT073] Sequence ID: P0A8D7.1 Length: 177 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli O157:H7] Sequence ID: P0A8D8.1 Length: 177 Range 1: 1 to 133 Score:39.8 bits(131), Expect:0.017, Method:Composition-based stats., Identities:41/137(30%), Positives:72/137(52%), Gaps:11/137(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + + V+GDI K++ +V+VN+AN + GGGV AI AAG ++ + + Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCV 534 +G C+TG+ ++ +G L K+V++ VGP R ++ LL+ Y + N Y V Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 535 VTTLISAGIFSVPSDVS 551 IS+G+++ P + Sbjct 117 AFPAISTGVYGYPRAAA 133 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Shigella dysenteriae Sd197] Sequence ID: Q32E73.1 Length: 177 Range 1: 1 to 133 Score:38.7 bits(127), Expect:0.037, Method:Composition-based stats., Identities:40/137(29%), Positives:71/137(51%), Gaps:11/137(8%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + + V+GDI K++ +V+VN +N + GGGV AI AAG ++ + + Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVYKH------LNKYDCV 534 +G C+TG+ ++ +G L K+V++ VGP R ++ LL+ Y + N Y V Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 535 VTTLISAGIFSVPSDVS 551 IS+G+++ P + Sbjct 117 AFPAISTGVYGYPRAAA 133 >RecName: Full=Macro domain-containing protein TTE0995 [Caldanaerobacter subterraneus subsp. tengcongensis MB4] Sequence ID: Q8RB30.1 Length: 175 Range 1: 1 to 168 Score:38.5 bits(126), Expect:0.043, Method:Composition-based stats., Identities:46/172(27%), Positives:89/172(51%), Gaps:19/172(11%) Query 422 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 481 + ++ ++KG+I+ + +VN+AN+ + GGGV AI A+G + E + Sbjct 1 MKEKIKLIKGNIVDQE----VDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREK 56 Query 482 KGVCATGDCYVSTGGKL-CKTVLNVVGPDARTQGKQSYALLERVY----KHLNKYDCVVT 536 +G C+TG+ ++ +G+L K V++ VGP + + LL Y K + Y+ Sbjct 57 QGGCPTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTI 116 Query 537 TL--ISAGIFSVPSD--------VSLTYLLGTAEKQVVLVSNNQEDFDLISK 578 ++ IS+G ++ P + V YL G++ K+V +V ++ D+++ SK Sbjct 117 AFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSDRDYEVYSK 168