FastQCFastQC Report
Tue 28 Dec 2021
SRR4240380.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4240380.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5217318
Sequences flagged as poor quality0
Sequence length36
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1207372.3141583472581124No Hit
GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAA210760.4039623423375765Illumina Single End Adapter 1 (100% over 33bp)
GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGGAT167730.32148701689258735Illumina Single End Adapter 1 (100% over 33bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN152990.293234953284427No Hit
GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTAGAT127700.24476177223623327Illumina Single End Adapter 1 (96% over 32bp)
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN125030.23964420033434802No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN101940.19538774519782No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN58000.11116822858027822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)