RID: 02R8J78N016 Job Title:POL_FIVPE P16088 Pol polyprotein (Protease)... Program: BLASTP Query: POL_FIVPE P16088 Pol polyprotein (Protease) (Retropepsin) (3.4.23.-) (Reverse transcriptase/ribonuclease H) (RT) (2.7.7.49) (3.1.26.13) (Exoribonuclease H) (3.1.13.2) (Deoxyuridine 5'-triphosphate nucleotidohydrolase) (dUTPase) (3.6.1.23) (Integrase) (IN) (2.7.7.- {ECO:0000250|UniProtKB:P04585}) (3.1.-.- {ECO:0000250|UniProtKB:P04585}) ID: lcl|Query_6928766(amino acid) Length: 281 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 591 591 100% 0.0 100.00 1124 P16088.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11675 568 568 100% 0.0 95.73 1124 P19028.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 531 531 100% 0.0 87.19 1124 P31822.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 209 209 95% 3e-60 39.33 1470 P27973.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11730 206 206 95% 3e-59 39.78 1465 P27980.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 206 206 95% 4e-59 41.33 1463 P20876.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 206 206 99% 6e-59 38.93 1439 P20875.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 206 206 95% 6e-59 40.07 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 205 205 95% 1e-58 40.07 1449 P19505.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 204 204 99% 1e-58 38.21 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 204 204 95% 1e-58 39.70 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 204 204 95% 2e-58 40.07 1472 Q02836.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 204 204 95% 3e-58 39.85 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66 NA 388911 204 204 95% 3e-58 39.48 1438 Q1A267.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 203 203 96% 3e-58 39.85 1462 Q8AII1.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 203 203 95% 4e-58 38.95 1465 P15833.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 203 203 99% 4e-58 38.57 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 203 203 95% 5e-58 38.89 1448 P05896.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 203 203 95% 5e-58 38.95 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 202 202 95% 9e-58 39.70 1449 P12502.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 202 202 95% 9e-58 40.67 1446 Q79666.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11734 201 201 95% 2e-57 38.52 1448 P05897.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 201 201 95% 2e-57 40.07 1431 O12158.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 201 201 96% 2e-57 39.29 1435 Q77373.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 201 201 99% 2e-57 38.57 1437 P03369.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 201 201 99% 2e-57 38.21 1447 P03367.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 201 201 99% 3e-57 38.21 1434 P20892.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106 NA 388819 201 201 95% 3e-57 39.33 1449 Q9IDV9.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 201 201 95% 4e-57 38.58 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 200 200 99% 4e-57 37.86 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 200 200 99% 6e-57 37.86 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 200 200 95% 6e-57 39.93 1467 P05895.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 199 199 99% 9e-57 37.86 1435 Q73368.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 199 199 99% 9e-57 37.86 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 199 199 95% 1e-56 38.58 1462 P12451.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 199 199 99% 1e-56 37.86 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11682 199 199 99% 1e-56 37.86 1447 P04587.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 199 199 99% 2e-56 37.86 1432 P18802.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 198 198 99% 2e-56 37.86 1435 P04585.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA 388888 198 198 95% 2e-56 38.91 1436 Q9Q720.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 198 198 99% 2e-56 37.86 1440 P04588.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11701 198 198 99% 3e-56 38.21 1436 P05959.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11732 197 197 95% 6e-56 38.43 1441 P22382.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 197 197 99% 7e-56 37.50 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 197 197 95% 7e-56 38.95 1430 Q9QBY3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 197 197 95% 7e-56 37.83 1464 Q89928.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 197 197 99% 7e-56 37.86 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 197 197 95% 8e-56 37.83 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 196 196 99% 8e-56 37.86 1434 Q9QBZ1.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 196 196 95% 9e-56 38.58 1432 Q9WC54.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1 NA 402771 196 196 95% 9e-56 38.58 1384 P17283.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 196 196 95% 1e-55 38.58 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 196 196 95% 1e-55 38.91 1439 Q75002.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 196 196 99% 1e-55 37.14 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 196 196 95% 1e-55 38.20 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 196 196 95% 2e-55 38.20 1433 O89940.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 196 196 99% 2e-55 37.14 1430 O89290.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 195 195 95% 2e-55 38.18 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 195 195 95% 2e-55 38.20 1449 O91080.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 194 194 99% 4e-55 37.50 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 194 194 95% 4e-55 37.83 1550 P18096.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 194 194 95% 5e-55 38.20 1430 Q9QSR3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 193 193 95% 1e-54 37.45 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 193 193 99% 2e-54 36.62 1435 O93215.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Bovine immun... NA 417296 182 182 97% 7e-51 37.32 1475 P19560.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11670 182 182 96% 7e-51 35.79 1146 P11204.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 31675 182 182 96% 8e-51 35.79 1146 P32542.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11672 181 181 96% 2e-50 35.79 1145 P03371.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA 36370 172 172 97% 2e-47 36.13 1432 Q82851.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Ovine lentiv... NA 11664 163 163 97% 3e-44 33.33 1086 P16901.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11744 161 161 96% 2e-43 33.21 1506 P23427.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11742 161 161 96% 2e-43 33.21 1506 P03370.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna/maedi ... NA 36374 161 161 96% 2e-43 33.21 1506 P35956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11743 161 161 96% 2e-43 33.21 1506 P23426.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA 11661 153 153 97% 9e-41 32.37 1109 P33459.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 110 110 94% 7e-26 29.54 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 108 108 94% 2e-25 29.33 1772 P04025.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 105 105 96% 2e-24 28.47 1768 P51517.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Golden hamst... NA 11752 99.4 99.4 92% 4e-22 30.18 863 P04026.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 97.8 97.8 95% 1e-21 30.04 1880 P03364.3 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11754 91.7 91.7 94% 1e-19 28.01 814 P12894.1 RecName: Full=Endogenous retrovirus group K member 25 Pol... Homo sapiens human 9606 91.7 91.7 93% 2e-19 28.06 954 P63136.1 RecName: Full=Endogenous retrovirus group K member 7 Pol... Homo sapiens human 9606 90.9 90.9 93% 3e-19 28.42 1459 P63135.1 RecName: Full=Endogenous retrovirus group K member 19 Pol... Homo sapiens human 9606 90.5 90.5 93% 4e-19 28.42 959 Q9WJR5.2 RecName: Full=Endogenous retrovirus group K member 113 Pol... Homo sapiens human 9606 90.5 90.5 93% 4e-19 28.42 959 P63132.2 RecName: Full=Endogenous retrovirus group K member 8 Pol... Homo sapiens human 9606 90.1 90.1 93% 5e-19 28.06 956 P63133.1 RecName: Full=Endogenous retrovirus group K member 6 Pol... Homo sapiens human 9606 90.1 90.1 93% 5e-19 28.06 956 Q9BXR3.2 RecName: Full=Endogenous retrovirus group K member 11 Pol... Homo sapiens human 9606 89.7 89.7 93% 6e-19 28.06 969 Q9UQG0.2 RecName: Full=Endogenous retrovirus group K member 10 Pol... Homo sapiens human 9606 89.0 89.0 93% 1e-18 27.70 1014 P10266.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 85.5 85.5 98% 2e-17 27.59 1726 P31623.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11708 78.6 78.6 49% 9e-17 33.57 148 P04586.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 81.3 81.3 86% 5e-16 29.00 1462 P14078.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 81.3 81.3 86% 5e-16 29.63 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 80.1 80.1 86% 1e-15 28.85 1462 P0C211.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 79.7 79.7 91% 2e-15 26.74 1440 Q0R5R2.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 79.3 79.3 88% 3e-15 29.01 1461 P03363.4 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 78.6 78.6 95% 4e-15 26.41 1440 Q4U0X6.4 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11753 77.4 77.4 63% 1e-14 32.12 867 P11368.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 75.9 75.9 95% 4e-14 27.92 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 75.5 75.5 95% 5e-14 27.92 1755 P11283.2 Alignments: >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 844 to 1124 Score:591 bits(1523), Expect:0.0, Method:Compositional matrix adjust., Identities:281/281(100%), Positives:281/281(100%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP Sbjct 844 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM Sbjct 1024 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 1124 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19028.1 Length: 1124 Range 1: 844 to 1124 Score:568 bits(1463), Expect:0.0, Method:Compositional matrix adjust., Identities:269/281(96%), Positives:274/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAE NHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRI GEQVGGQLKIGP Sbjct 844 SSWVDRIEEAETNHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHFDGKIILV IHVESGYIWAQIISQETADCTVKAVLQLLSAH VTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVAIHVESGYIWAQIISQETADCTVKAVLQLLSAHIVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVN TLKVW+ KFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPETTSLDNALAL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 AVH LNFK+RGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM Sbjct 1024 AVHCLNFKQRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKGYFLIPRRH++RVPEPCALPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHVKRVPEPCALPEGDE 1124 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 Range 1: 844 to 1124 Score:531 bits(1368), Expect:0.0, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:266/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRI GEQVGGQLKI P Sbjct 844 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 904 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 A+H LNFK+RGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRHIRRVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 1124 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27973.2 Length: 1470 Range 1: 1174 to 1439 Score:209 bits(532), Expect:3e-60, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:170/267(63%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ RIEEA+ H+++HS+ + L F LP++VA+EI CP C++ GE + GQ+ PG+ Sbjct 1174 FIGRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQVKGEPIHGQVDASPGV 1233 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I +ET T K +L+++ +T L TDNGPN Sbjct 1234 WQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPN 1293 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + V+H G+P NPQSQ +E++N LK I K + + A+ +A Sbjct 1294 FTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 1353 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG+ E L + +++ + QK+ +YY++ +D WKGP R Sbjct 1354 HIHNFKRKGGIGGLTAAERLINMITTQLEINTLQTKIQKILNFRVYYREGRDPVWKGPAR 1413 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK+ E+ ++PRR + Sbjct 1414 LIWKGEGAVVLKEGEE-LKVVPRRKAK 1439 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27980.2 Length: 1465 Range 1: 1175 to 1440 Score:206 bits(525), Expect:3e-59, Method:Compositional matrix adjust., Identities:107/269(40%), Positives:172/269(63%), Gaps:6/269(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IEEA+ HE++H++ + L + LP++VA+EI CP C+I GE V GQ+ PG+ Sbjct 1175 FLEKIEEAQEEHERYHNNWRNLADTYGLPQIVAKEIVAMCPKCQIKGEPVHGQVDASPGV 1234 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I +ET T K +L++LS +T+L TDNGPN Sbjct 1235 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPN 1294 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + ++H G+P NPQSQ +E++N LK I K + + A+ +A Sbjct 1295 FTSQEVAAMCWWGKIEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 1354 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG+ P E L + +++ + QK+ +YY++ +D WKGP + Sbjct 1355 HIHNFKRKGGIGGLTPAERLINMITTQLELQHLQTKIQKILNFRVYYREGRDPVWKGPGQ 1414 Query 242 VEYWGQGSVLLKD--EEKGYFLIPRRHIR 268 + + G+G+V++K E K Y PRR + Sbjct 1415 LIWKGEGAVVIKGGVELKEY---PRRKAK 1440 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 1171 to 1436 Score:206 bits(525), Expect:4e-59, Method:Compositional matrix adjust., Identities:112/271(41%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LPK+VA +I C C+ GE + GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1291 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 1350 Query 183 HSLNFKRRGRIGGMAPYELL-----AQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 H +NFKRRG IG M P E L A+QE IQ + A KLQ +Y+++ +D+ WK Sbjct 1351 HCMNFKRRGGIGDMTPAERLINMVTAEQE---IQ-FLQAKNSKLQNFRVYFREGRDQLWK 1406 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP + + G G+V++K +IPRR + Sbjct 1407 GPGELLWKGDGAVIVK-VGADIKIIPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 1152 to 1430 Score:206 bits(523), Expect:6e-59, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1152 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1211 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L VT + TDNG N Sbjct 1212 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 1271 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1272 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1331 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1332 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 1391 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1392 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1430 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 1171 to 1436 Score:206 bits(523), Expect:6e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H + + L +F LP++VA++I C C+ GE V GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHGNVKELVHKFGLPQLVAKQIVNSCDKCQQKGEAVHGQVNAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q ++ ++G++ FG+P NPQSQ +VE +NH LK I + + S++ + +A Sbjct 1291 FTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAA 1350 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + +F A K Q +YY++ +D+ WKGP Sbjct 1351 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 1410 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+VL+K + +IPRR + Sbjct 1411 LLWKGEGAVLIKVGTE-IKVIPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 1157 to 1422 Score:205 bits(521), Expect:1e-58, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1157 FLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1217 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1277 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYF-SAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + F + K + +YY++ +D+ WKGP Sbjct 1337 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 1396 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK + ++PRR + Sbjct 1397 LLWKGEGAVILKVGTE-IKVVPRRKAK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 1154 to 1432 Score:204 bits(520), Expect:1e-58, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1154 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1213 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNGPN Sbjct 1214 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 1273 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ ++E++N LK I + + L A+ +AV Sbjct 1274 FTSTTVKAACWWTGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKRAVQMAV 1333 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1334 FIHNFKRKGGIGGYSAGERIVGIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1393 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1394 LLWKGEGAVVIQDNND-IKVVPRRKAKVIRDYGKQTAGDD 1432 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74120.3 Length: 1463 Range 1: 1171 to 1436 Score:204 bits(520), Expect:1e-58, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LPK+VA +I C C+ GE + GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1291 FTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 1350 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +D+ WKGP Sbjct 1351 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNSKLKNFRVYFREGRDQLWKGPGE 1410 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K ++PRR + Sbjct 1411 LLWKGDGAVIVK-VGTDIKIVPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02836.2 Length: 1472 Range 1: 1170 to 1435 Score:204 bits(518), Expect:2e-58, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++DRIEEA+ +H K+H++ + + EF LP +VA+EI CP C+I GE GQ+ Sbjct 1170 FLDRIEEAQDDHAKYHNNWRSMVQEFGLPNIVAKEIVAACPKCQIRGEPKHGQVDASIET 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I +ET T +L+LL+ V L TDNGPN Sbjct 1230 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAHFLLKLLARWPVKHLHTDNGPN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q + V + ++H GIP NPQSQ VE++N LK I + + L+ A+ +A Sbjct 1290 FTSQNVAAVCWWGNIEHTTGIPYNPQSQGSVESMNRQLKEIISQIRDDCERLETAVQMAT 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG++ E L + +++ + QK+ +YY++ +D WKGP R Sbjct 1350 HIHNFKRKGGIGGISSAERLVNMLTTQLELNTLQNQIQKILNFKVYYREGRDPVWKGPAR 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K+ E ++PRR + Sbjct 1410 LIWKGEGAVVIKEGED-IKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17757.3 Length: 1462 Range 1: 1170 to 1435 Score:204 bits(518), Expect:3e-58, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ GE + GQ+ G+ Sbjct 1170 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNGPN Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1290 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 1349 Query 183 HSLNFKRRGRIGGMAPYELL-----AQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 H +NFKRRG IG M P E L +QE +Q S +K Q +YY++ +D+ WK Sbjct 1350 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNF-KKFQ---VYYREGRDQLWK 1405 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP + + G G+V++K ++PRR + Sbjct 1406 GPGELLWKGDGAVIVK-VGADIKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66] Sequence ID: Q1A267.4 Length: 1438 Range 1: 1147 to 1412 Score:204 bits(518), Expect:3e-58, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1147 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAIHGQVDCSPGI 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNG N Sbjct 1207 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1267 FTSSTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYE-----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 NFKR+G IGG + E L ++ ++Q S I QK + +YY+D +D WK Sbjct 1327 FIHNFKRKGGIGGYSAGERIIDILATDIQTTKLQQQISNI-QKFR---VYYRDSRDPIWK 1382 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP ++ + G+G+V+L+D+E+ ++PRR + Sbjct 1383 GPAKLLWKGEGAVVLQDQEE-IKVVPRRKAK 1412 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 1175 to 1444 Score:203 bits(517), Expect:3e-58, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I EA+ +H+K+HS+ + L E+NLP +VA+EI +CP C I GE + GQ+ P I Sbjct 1175 FLDGINEAQEDHDKYHSNWKALADEYNLPPVVAKEIIAQCPKCHIKGEAIHGQVDYSPEI 1234 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+I+V +HV SG+I A++I +ET T +L+L V ++ TDNGPN Sbjct 1235 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPEETGRETAYFILKLAGRWPVKKIHTDNGPN 1294 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + ++H+FGIP NPQSQ +VE++N LK I++ + L A+ +AV Sbjct 1295 FTSTAVKAACWWAQIQHEFGIPYNPQSQGVVESMNKQLKQIIEQVRDQAEQLRTAVIMAV 1354 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQD-YFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 + NFKR+G IG E L + IQ K+Q +YY+D +D WKGP R Sbjct 1355 YIHNFKRKGGIGEYTAGERLLDILTTNIQTKQLQKQILKVQNFRVYYRDARDPIWKGPAR 1414 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPE 272 + + G+G+V++K+ E ++PRR + + E Sbjct 1415 LLWKGEGAVVIKEGED-IKVVPRRKAKIIKE 1444 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15833.3 Length: 1465 Range 1: 1170 to 1435 Score:203 bits(517), Expect:4e-58, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ GE + GQ+ G Sbjct 1170 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNADLGT 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ V ++G++ FG+P NPQSQ +VE +NH LK I + + S++ + +A Sbjct 1290 FTSPSVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + +F A K Q +YY++ +D+ WKGP Sbjct 1350 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K + ++PRR + Sbjct 1410 LLWKGEGAVIIKVGTE-IKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 1148 to 1426 Score:203 bits(516), Expect:4e-58, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L VT + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 1156 to 1421 Score:203 bits(516), Expect:5e-58, Method:Compositional matrix adjust., Identities:105/270(39%), Positives:169/270(62%), Gaps:8/270(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ H K+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1156 FLEKIEPAQEEHSKYHSNIKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNSDLGT 1215 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1216 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1275 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++H FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1276 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 1335 Query 183 HSLNFKRRGRIGGMAPYE----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKG 238 H +NFKRRG IG M P E ++ ++ ++ Q ++ K + +YY++ +D+ WKG Sbjct 1336 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 1392 Query 239 PMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 P + + G+G+V+LK ++PRR + Sbjct 1393 PGELLWKGEGAVILK-VGTDIKVVPRRKAK 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04584.3 Length: 1464 Range 1: 1172 to 1437 Score:203 bits(516), Expect:5e-58, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ GE + GQ+ G Sbjct 1172 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQKGEAIHGQVNAELGT 1231 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1232 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1291 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +A+ Sbjct 1292 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAI 1351 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +D+ WKGP Sbjct 1352 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRDQLWKGPGE 1411 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+VL+K +IPRR + Sbjct 1412 LLWKGEGAVLVKVGTD-IKIIPRRKAK 1437 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12502.2 Length: 1449 Range 1: 1157 to 1422 Score:202 bits(514), Expect:9e-58, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ +IE A+ HEK+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1157 FLKKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L +T L TDNG N Sbjct 1217 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1277 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYF-SAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + F + K + +YY++ +D+ WKGP Sbjct 1337 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 1396 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK + ++PRR + Sbjct 1397 LLWKGEGAVILKVGTE-IKVVPRRKAK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 1149 to 1414 Score:202 bits(514), Expect:9e-58, Method:Compositional matrix adjust., Identities:109/268(41%), Positives:164/268(61%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I GE GQ+ P I Sbjct 1149 FLEGIDQAQEDHEKYHSNWRALASDFGLPPIVAKEIIASCPKCHIKGEATHGQVDYSPEI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV S +I A++I ET T +L+L + V + TDNGPN Sbjct 1209 WQMDCTHLEGKIIIVAVHVASDFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + M+ + G++H+FGIP NPQSQ +VE +N LK IQ+ + L A+ +AV Sbjct 1269 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E L + +IQ K+ +YY+D +D WKGP + Sbjct 1329 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKINNFRVYYRDSRDPIWKGPAQ 1388 Query 242 VEYWGQGSVLLKDEEKGYF-LIPRRHIR 268 + + G+G+V+++D KG ++PRR + Sbjct 1389 LLWKGEGAVVIQD--KGDIKVVPRRKAK 1414 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P05897.3 Length: 1448 Range 1: 1156 to 1421 Score:201 bits(512), Expect:2e-57, Method:Compositional matrix adjust., Identities:104/270(39%), Positives:168/270(62%), Gaps:8/270(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ H+K+HS+ + L +F LP++VA +I C C GE + GQ+ G Sbjct 1156 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 1215 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I QET T +L+L +T L TDNG N Sbjct 1216 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 1275 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++H FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1276 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 1335 Query 183 HSLNFKRRGRIGGMAPYE----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKG 238 H +NFKRRG IG M P E ++ ++ ++ Q ++ K + +YY++ +D+ WKG Sbjct 1336 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 1392 Query 239 PMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 P + + G+G+V+LK ++PRR + Sbjct 1393 PGELLWKGEGAVILK-VGTDIKVVPRRKAK 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 1144 to 1409 Score:201 bits(512), Expect:2e-57, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I +A+ HEK+HS+ + + +EFNLP +VA+EI C C++ GE GQ+ PGI Sbjct 1144 FLDGINKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 1203 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1204 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1263 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1264 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1323 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1324 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIMKIQNFRVYYRDSRDPIWKGPAK 1383 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+L+D ++PRR ++ Sbjct 1384 LLWKGEGAVVLQDNSD-IKVVPRRKVK 1409 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 1147 to 1416 Score:201 bits(511), Expect:2e-57, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:20/280(7%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I GE + GQ+ P + Sbjct 1147 FLEGIDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SG+I A++I ET T +L+L + V + TDNGPN Sbjct 1207 WQIDCTHMEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + M+ + ++H+FGIP NPQSQ +VE +N LK IQ+ + L A+ +AV Sbjct 1267 FTSTTMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQ---------WIYYKDQKD 233 NFKR+G IGG E RI D ++ Q + Q +YY+D +D Sbjct 1327 FVHNFKRKGGIGGYTAGE--------RIIDILASQIQTTELQKQILKXHKFRVYYRDSRD 1378 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYF-LIPRRHIRRVPE 272 WKGP ++ + G+G+V+++D KG ++PRR + + E Sbjct 1379 PIWKGPAQLLWKGEGAVVIQD--KGDIKVVPRRKAKIIRE 1416 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 1150 to 1428 Score:201 bits(511), Expect:2e-57, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1150 FLNGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1209 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1210 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1269 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N+ LK I + + L A+ +AV Sbjct 1270 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 1329 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D KD WKGP + Sbjct 1330 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 1389 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1390 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1428 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 1160 to 1438 Score:201 bits(511), Expect:2e-57, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 1147 to 1425 Score:201 bits(510), Expect:3e-57, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1147 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1207 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N+ LK I + + L A+ +AV Sbjct 1267 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1327 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 1386 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1387 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1425 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106] Sequence ID: Q9IDV9.3 Length: 1449 Range 1: 1158 to 1423 Score:201 bits(510), Expect:3e-57, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PG+ Sbjct 1158 FLDGIEKAQEEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQINCSPGV 1217 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNGPN Sbjct 1218 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 1277 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ VE++N LK I + + L A+ +AV Sbjct 1278 FISATVKAACWWAGIKQEFGIPYNPQSQGAVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1337 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E + + IQ K+Q +YY+D +D WKGP + Sbjct 1338 FIHNFKRKGGIGGXTAGERIIDIIATDIQTTKLQTQILKVQNFXVYYRDSRDPIWKGPAK 1397 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D ++PRR + Sbjct 1398 LLWKGEGAVVIQD-NGDIKVVPRRKAK 1423 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18042.4 Length: 1464 Range 1: 1172 to 1437 Score:201 bits(510), Expect:4e-57, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ GE + GQ+ G+ Sbjct 1172 FLERIEPAQEEHEKYHSNMKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 1231 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1232 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGSN 1291 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1292 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 1351 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + + +YY++ +D+ WKGP Sbjct 1352 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 1411 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K +IPRR + Sbjct 1412 LLWKGDGAVIVK-VGADIKVIPRRKAK 1437 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 1148 to 1426 Score:200 bits(509), Expect:4e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ ++E++N LK I + + L A+ +AV Sbjct 1268 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 1149 to 1427 Score:200 bits(508), Expect:6e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1329 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 1388 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1389 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05895.2 Length: 1467 Range 1: 1177 to 1442 Score:200 bits(508), Expect:6e-57, Method:Compositional matrix adjust., Identities:107/268(40%), Positives:167/268(62%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IEEA+ HE++H++ + L + LP++VA+EI CP C+I GE V GQ+ PG Sbjct 1177 FLEKIEEAQEKHERYHNNWKNLADTYGLPQIVAKEIVAMCPKCQIKGEPVHGQVDASPGT 1236 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH + K+++V +HV SG+I A++I +ET T K +L++LS +T+L TDNGPN Sbjct 1237 WQMDCTHLEKKVVIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPN 1296 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + ++H GIP NPQSQ +E++N LK I K + + A+ +A Sbjct 1297 FTSQEVAAICWWGKIEHTTGIPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTEAAVLMAC 1356 Query 183 HSLNFKRRGRIGGMAPYELLAQ--QESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 NFKR+G IGG E L L IQ + I QK+ +YY++ +D WKGP Sbjct 1357 ILHNFKRKGGIGGQTSAERLINIITTQLEIQHLQTKI-QKILNFRVYYREGRDPVWKGPA 1415 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 ++ + G+G+V+LKD ++PRR + Sbjct 1416 QLIWKGEGAVVLKDGSD-LKVVPRRKAK 1442 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 1148 to 1426 Score:199 bits(507), Expect:9e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHTNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 1160 to 1438 Score:199 bits(507), Expect:9e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12451.3 Length: 1462 Range 1: 1170 to 1435 Score:199 bits(506), Expect:1e-56, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++RIE A+ H K+HS+ + L +F LP +VA +I C C+ GE + GQ+ G Sbjct 1170 FLERIEPAQEEHGKYHSNVKELAHKFGLPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I++ + +++ + +AV Sbjct 1290 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIERIREQANTMETIVLMAV 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +++ W+GP Sbjct 1350 HCMNFKRRGGIGDMTPVERLVNMITTEQEIQFLQAKNSKLKNFRVYFREGRNQLWQGPGE 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K +IPRR + Sbjct 1410 LLWKGDGAVIVK-VGTDIKVIPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 1148 to 1426 Score:199 bits(506), Expect:1e-56, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04587.3 Length: 1447 Range 1: 1160 to 1438 Score:199 bits(506), Expect:1e-56, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 1145 to 1423 Score:199 bits(505), Expect:2e-56, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1145 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1204 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1205 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 1264 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1265 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1324 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1325 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAK 1384 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1385 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1423 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 1148 to 1426 Score:198 bits(504), Expect:2e-56, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991] Sequence ID: Q9Q720.3 Length: 1436 Range 1: 1149 to 1414 Score:198 bits(504), Expect:2e-56, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:165/275(60%), Gaps:18/275(6%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A++ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQVQHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKMIHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + + +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSAAVKAACWWADIHQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSA-IPQK--------LQAQWIYYKDQKD 233 NFKR+G IGG + E RI D + IP K +Q +YY+D +D Sbjct 1329 FIHNFKRKGGIGGYSARE--------RIIDIIATDIPTKELQKQISQIQKFRVYYRDSRD 1380 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 WKGP ++ + G+G+V+++D + ++PRR + Sbjct 1381 PIWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAK 1414 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 1153 to 1431 Score:198 bits(504), Expect:2e-56, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1153 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1212 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1213 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGSN 1272 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1273 FTSAAVKAACWWANIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1332 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1333 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 1392 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1393 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1431 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05959.3 Length: 1436 Range 1: 1149 to 1427 Score:198 bits(503), Expect:3e-56, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKG + Sbjct 1329 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGHAK 1388 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1389 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22382.2 Length: 1441 Range 1: 1157 to 1422 Score:197 bits(500), Expect:6e-56, Method:Compositional matrix adjust., Identities:103/268(38%), Positives:169/268(63%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ IE A+ HEK+HS+ LR +F+LP +VA++I + C C GE + GQ G+ Sbjct 1157 FLQNIEPAQEEHEKYHSNEAQLREKFHLPALVAKQIVQSCSKCCHHGEPIKGQTDASLGV 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH + +II+V +HV SG++ A++I+ ET T + +L+L + +++L TDNGPN Sbjct 1217 WQIDCTHLENQIIIVAVHVASGFMKAEVITAETGKKTAEFLLKLAAQWPISKLHTDNGPN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q