RID: 02S12XAT013 Job Title:POL_FIVPE P16088 Pol polyprotein (Protease)... Program: BLASTP Query: POL_FIVPE P16088 Pol polyprotein (Protease) (Retropepsin) (3.4.23.-) (Reverse transcriptase/ribonuclease H) (RT) (2.7.7.49) (3.1.26.13) (Exoribonuclease H) (3.1.13.2) (Deoxyuridine 5'-triphosphate nucleotidohydrolase) (dUTPase) (3.6.1.23) (Integrase) (IN) (2.7.7.- {ECO:0000250|UniProtKB:P04585}) (3.1.-.- {ECO:0000250|UniProtKB:P04585}) ID: lcl|Query_7513118(amino acid) Length: 281 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 591 591 100% 0.0 100.00 1124 P16088.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11675 568 568 100% 0.0 95.73 1124 P19028.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 531 531 100% 0.0 87.19 1124 P31822.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 209 209 95% 1e-61 39.33 1470 P27973.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11730 206 206 95% 1e-60 39.78 1465 P27980.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 206 206 95% 1e-60 41.33 1463 P20876.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 206 206 99% 2e-60 38.93 1439 P20875.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 206 206 95% 3e-60 40.07 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 205 205 95% 5e-60 40.07 1449 P19505.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 204 204 99% 5e-60 38.21 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 204 204 95% 6e-60 39.70 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 204 204 95% 1e-59 40.07 1472 Q02836.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 204 204 95% 1e-59 39.85 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66 NA 388911 204 204 95% 1e-59 39.48 1438 Q1A267.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 203 203 96% 1e-59 39.85 1462 Q8AII1.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 203 203 95% 2e-59 38.95 1465 P15833.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 203 203 99% 2e-59 38.57 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 203 203 95% 2e-59 38.89 1448 P05896.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 203 203 95% 2e-59 38.95 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 202 202 95% 4e-59 39.70 1449 P12502.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 202 202 95% 4e-59 40.67 1446 Q79666.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11734 201 201 95% 7e-59 38.52 1448 P05897.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 201 201 95% 8e-59 40.07 1431 O12158.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 201 201 96% 9e-59 39.29 1435 Q77373.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 201 201 99% 9e-59 38.57 1437 P03369.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 201 201 99% 9e-59 38.21 1447 P03367.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 201 201 99% 1e-58 38.21 1434 P20892.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106 NA 388819 201 201 95% 1e-58 39.33 1449 Q9IDV9.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 201 201 95% 2e-58 38.58 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 200 200 99% 2e-58 37.86 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 200 200 99% 3e-58 37.86 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 200 200 95% 3e-58 39.93 1467 P05895.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 199 199 99% 4e-58 37.86 1435 Q73368.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 199 199 99% 4e-58 37.86 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 199 199 95% 4e-58 38.58 1462 P12451.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 199 199 99% 5e-58 37.86 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11682 199 199 99% 5e-58 37.86 1447 P04587.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 199 199 99% 7e-58 37.86 1432 P18802.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 198 198 99% 8e-58 37.86 1435 P04585.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA 388888 198 198 95% 8e-58 38.91 1436 Q9Q720.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 198 198 99% 9e-58 37.86 1440 P04588.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11701 198 198 99% 1e-57 38.21 1436 P05959.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11732 197 197 95% 3e-57 38.43 1441 P22382.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 197 197 99% 3e-57 37.50 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 197 197 95% 3e-57 38.95 1430 Q9QBY3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 197 197 95% 3e-57 37.83 1464 Q89928.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 197 197 99% 3e-57 37.86 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 197 197 95% 3e-57 37.83 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 196 196 99% 3e-57 37.86 1434 Q9QBZ1.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 196 196 95% 4e-57 38.58 1432 Q9WC54.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1 NA 402771 196 196 95% 4e-57 38.58 1384 P17283.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 196 196 95% 4e-57 38.58 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 196 196 95% 5e-57 38.91 1439 Q75002.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 196 196 99% 6e-57 37.14 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 196 196 95% 6e-57 38.20 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 196 196 95% 7e-57 38.20 1433 O89940.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 196 196 99% 7e-57 37.14 1430 O89290.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 195 195 95% 9e-57 38.18 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 195 195 95% 1e-56 38.20 1449 O91080.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 194 194 99% 2e-56 37.50 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 194 194 95% 2e-56 37.83 1550 P18096.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 194 194 95% 2e-56 38.20 1430 Q9QSR3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 193 193 95% 5e-56 37.45 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 193 193 99% 6e-56 36.62 1435 O93215.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Bovine immun... NA 417296 182 182 97% 3e-52 37.32 1475 P19560.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11670 182 182 96% 3e-52 35.79 1146 P11204.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 31675 182 182 96% 3e-52 35.79 1146 P32542.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11672 181 181 96% 1e-51 35.79 1145 P03371.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA 36370 172 172 97% 8e-49 36.13 1432 Q82851.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Ovine lentiv... NA 11664 163 163 97% 1e-45 33.33 1086 P16901.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11744 161 161 96% 6e-45 33.21 1506 P23427.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11742 161 161 96% 6e-45 33.21 1506 P03370.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna/maedi ... NA 36374 161 161 96% 7e-45 33.21 1506 P35956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11743 161 161 96% 7e-45 33.21 1506 P23426.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA 11661 153 153 97% 4e-42 32.37 1109 P33459.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 110 110 94% 3e-27 29.54 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 108 108 94% 9e-27 29.33 1772 P04025.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 105 105 96% 1e-25 28.47 1768 P51517.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Golden hamst... NA 11752 99.4 99.4 92% 2e-23 30.18 863 P04026.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 97.8 97.8 95% 5e-23 30.04 1880 P03364.3 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11754 91.7 91.7 94% 6e-21 28.01 814 P12894.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 85.5 85.5 98% 8e-19 27.59 1726 P31623.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11708 78.6 78.6 49% 4e-18 33.57 148 P04586.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 81.3 81.3 86% 2e-17 29.00 1462 P14078.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 81.3 81.3 86% 2e-17 29.63 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 80.1 80.1 86% 6e-17 28.85 1462 P0C211.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 79.7 79.7 91% 8e-17 26.74 1440 Q0R5R2.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 79.3 79.3 88% 1e-16 29.01 1461 P03363.4 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 78.6 78.6 95% 2e-16 26.41 1440 Q4U0X6.4 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11753 77.4 77.4 63% 4e-16 32.12 867 P11368.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 75.9 75.9 95% 2e-15 27.92 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 75.5 75.5 95% 2e-15 27.92 1755 P11283.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 363745 61.2 61.2 66% 1e-10 28.64 1603 Q04095.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 11864 61.2 61.2 66% 1e-10 28.64 1603 Q7SQ98.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 269447 59.7 59.7 66% 4e-10 28.16 1603 O92956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 11888 59.7 59.7 66% 4e-10 28.16 1603 P03354.2 Alignments: >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 844 to 1124 Score:591 bits(1523), Expect:0.0, Method:Compositional matrix adjust., Identities:281/281(100%), Positives:281/281(100%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP Sbjct 844 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM Sbjct 1024 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 1124 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19028.1 Length: 1124 Range 1: 844 to 1124 Score:568 bits(1463), Expect:0.0, Method:Compositional matrix adjust., Identities:269/281(96%), Positives:274/281(97%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAE NHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRI GEQVGGQLKIGP Sbjct 844 SSWVDRIEEAETNHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIRGEQVGGQLKIGP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHFDGKIILV IHVESGYIWAQIISQETADCTVKAVLQLLSAH VTELQTDNG Sbjct 904 GIWQMDCTHFDGKIILVAIHVESGYIWAQIISQETADCTVKAVLQLLSAHIVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVN TLKVW+ KFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPETTSLDNALAL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 AVH LNFK+RGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM Sbjct 1024 AVHCLNFKQRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKGYFLIPRRH++RVPEPCALPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGYFLIPRRHVKRVPEPCALPEGDE 1124 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 Range 1: 844 to 1124 Score:531 bits(1368), Expect:0.0, Method:Compositional matrix adjust., Identities:245/281(87%), Positives:266/281(94%), Gaps:0/281(0%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP 60 SSWVDRIEEAE+NHEKFHSDPQYLRTEFNLP++VAEEI+RKCP+CRI GEQVGGQLKI P Sbjct 844 SSWVDRIEEAELNHEKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIRP 903 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 GIWQMDCTHF+GKII+V +HVESG++WAQII QETADCTVKA+LQL+ AHNVTELQTDNG Sbjct 904 GIWQMDCTHFNGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTELQTDNG 963 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 PNFKNQKMEG+LNYMG+KHK GIPGNPQSQALVEN N+TLKVWIQKFLPETTSLDNAL+L Sbjct 964 PNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPETTSLDNALAL 1023 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 A+H LNFK+RGR+G MAPYEL QQESLRIQDYFSAIPQKL QW+YYKDQKDKKWKGPM Sbjct 1024 ALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKDKKWKGPM 1083 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 RVEYWGQGSVLLKDEEKG FL+PRRHIRRVPEPC LPEGDE Sbjct 1084 RVEYWGQGSVLLKDEEKGIFLVPRRHIRRVPEPCTLPEGDE 1124 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27973.2 Length: 1470 Range 1: 1174 to 1439 Score:209 bits(532), Expect:1e-61, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:170/267(63%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ RIEEA+ H+++HS+ + L F LP++VA+EI CP C++ GE + GQ+ PG+ Sbjct 1174 FIGRIEEAQEEHDRYHSNWRNLADTFGLPQIVAKEIVAMCPKCQVKGEPIHGQVDASPGV 1233 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I +ET T K +L+++ +T L TDNGPN Sbjct 1234 WQMDCTHIEGKIVIVAVHVASGFIEAEVIPRETGKETAKFLLKIIGRWPITHLHTDNGPN 1293 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + V+H G+P NPQSQ +E++N LK I K + + A+ +A Sbjct 1294 FTSQEVAAMCWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 1353 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG+ E L + +++ + QK+ +YY++ +D WKGP R Sbjct 1354 HIHNFKRKGGIGGLTAAERLINMITTQLEINTLQTKIQKILNFRVYYREGRDPVWKGPAR 1413 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK+ E+ ++PRR + Sbjct 1414 LIWKGEGAVVLKEGEE-LKVVPRRKAK 1439 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27980.2 Length: 1465 Range 1: 1175 to 1440 Score:206 bits(525), Expect:1e-60, Method:Compositional matrix adjust., Identities:107/269(40%), Positives:172/269(63%), Gaps:6/269(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IEEA+ HE++H++ + L + LP++VA+EI CP C+I GE V GQ+ PG+ Sbjct 1175 FLEKIEEAQEEHERYHNNWRNLADTYGLPQIVAKEIVAMCPKCQIKGEPVHGQVDASPGV 1234 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I +ET T K +L++LS +T+L TDNGPN Sbjct 1235 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPN 1294 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + ++H G+P NPQSQ +E++N LK I K + + A+ +A Sbjct 1295 FTSQEVAAMCWWGKIEHTTGVPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTETAVLMAC 1354 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG+ P E L + +++ + QK+ +YY++ +D WKGP + Sbjct 1355 HIHNFKRKGGIGGLTPAERLINMITTQLELQHLQTKIQKILNFRVYYREGRDPVWKGPGQ 1414 Query 242 VEYWGQGSVLLKD--EEKGYFLIPRRHIR 268 + + G+G+V++K E K Y PRR + Sbjct 1415 LIWKGEGAVVIKGGVELKEY---PRRKAK 1440 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 1171 to 1436 Score:206 bits(525), Expect:1e-60, Method:Compositional matrix adjust., Identities:112/271(41%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LPK+VA +I C C+ GE + GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1291 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 1350 Query 183 HSLNFKRRGRIGGMAPYELL-----AQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 H +NFKRRG IG M P E L A+QE IQ + A KLQ +Y+++ +D+ WK Sbjct 1351 HCMNFKRRGGIGDMTPAERLINMVTAEQE---IQ-FLQAKNSKLQNFRVYFREGRDQLWK 1406 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP + + G G+V++K +IPRR + Sbjct 1407 GPGELLWKGDGAVIVK-VGADIKIIPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 1152 to 1430 Score:206 bits(523), Expect:2e-60, Method:Compositional matrix adjust., Identities:109/280(39%), Positives:171/280(61%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1152 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1211 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L VT + TDNG N Sbjct 1212 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 1271 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1272 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1331 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1332 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 1391 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1392 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1430 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 1171 to 1436 Score:206 bits(523), Expect:3e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H + + L +F LP++VA++I C C+ GE V GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHGNVKELVHKFGLPQLVAKQIVNSCDKCQQKGEAVHGQVNAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q ++ ++G++ FG+P NPQSQ +VE +NH LK I + + S++ + +A Sbjct 1291 FTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAA 1350 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + +F A K Q +YY++ +D+ WKGP Sbjct 1351 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 1410 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+VL+K + +IPRR + Sbjct 1411 LLWKGEGAVLIKVGTE-IKVIPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 1157 to 1422 Score:205 bits(521), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1157 FLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1217 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1277 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYF-SAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + F + K + +YY++ +D+ WKGP Sbjct 1337 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 1396 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK + ++PRR + Sbjct 1397 LLWKGEGAVILKVGTE-IKVVPRRKAK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 1154 to 1432 Score:204 bits(520), Expect:5e-60, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:170/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1154 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1213 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNGPN Sbjct 1214 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 1273 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ ++E++N LK I + + L A+ +AV Sbjct 1274 FTSTTVKAACWWTGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKRAVQMAV 1333 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1334 FIHNFKRKGGIGGYSAGERIVGIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1393 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1394 LLWKGEGAVVIQDNND-IKVVPRRKAKVIRDYGKQTAGDD 1432 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74120.3 Length: 1463 Range 1: 1171 to 1436 Score:204 bits(520), Expect:6e-60, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F LPK+VA +I C C+ GE + GQ+ G Sbjct 1171 FLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVNTCAQCQQKGEAIHGQVDAELGT 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1231 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1291 FTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTMETIVLMAV 1350 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +D+ WKGP Sbjct 1351 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNSKLKNFRVYFREGRDQLWKGPGE 1410 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K ++PRR + Sbjct 1411 LLWKGDGAVIVK-VGTDIKIVPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02836.2 Length: 1472 Range 1: 1170 to 1435 Score:204 bits(518), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++DRIEEA+ +H K+H++ + + EF LP +VA+EI CP C+I GE GQ+ Sbjct 1170 FLDRIEEAQDDHAKYHNNWRSMVQEFGLPNIVAKEIVAACPKCQIRGEPKHGQVDASIET 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I +ET T +L+LL+ V L TDNGPN Sbjct 1230 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPRETGKETAHFLLKLLARWPVKHLHTDNGPN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q + V + ++H GIP NPQSQ VE++N LK I + + L+ A+ +A Sbjct 1290 FTSQNVAAVCWWGNIEHTTGIPYNPQSQGSVESMNRQLKEIISQIRDDCERLETAVQMAT 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H NFKR+G IGG++ E L + +++ + QK+ +YY++ +D WKGP R Sbjct 1350 HIHNFKRKGGIGGISSAERLVNMLTTQLELNTLQNQIQKILNFKVYYREGRDPVWKGPAR 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K+ E ++PRR + Sbjct 1410 LIWKGEGAVVIKEGED-IKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17757.3 Length: 1462 Range 1: 1170 to 1435 Score:204 bits(518), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F +P++VA +I C C+ GE + GQ+ G+ Sbjct 1170 FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNGPN Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1290 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 1349 Query 183 HSLNFKRRGRIGGMAPYELL-----AQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 H +NFKRRG IG M P E L +QE +Q S +K Q +YY++ +D+ WK Sbjct 1350 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNF-KKFQ---VYYREGRDQLWK 1405 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP + + G G+V++K ++PRR + Sbjct 1406 GPGELLWKGDGAVIVK-VGADIKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66] Sequence ID: Q1A267.4 Length: 1438 Range 1: 1147 to 1412 Score:204 bits(518), Expect:1e-59, Method:Compositional matrix adjust., Identities:107/271(39%), Positives:170/271(62%), Gaps:10/271(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1147 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVANCDKCQLKGEAIHGQVDCSPGI 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNG N Sbjct 1207 WQLDCTHLEGKIILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1267 FTSSTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYE-----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 NFKR+G IGG + E L ++ ++Q S I QK + +YY+D +D WK Sbjct 1327 FIHNFKRKGGIGGYSAGERIIDILATDIQTTKLQQQISNI-QKFR---VYYRDSRDPIWK 1382 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 GP ++ + G+G+V+L+D+E+ ++PRR + Sbjct 1383 GPAKLLWKGEGAVVLQDQEE-IKVVPRRKAK 1412 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 1175 to 1444 Score:203 bits(517), Expect:1e-59, Method:Compositional matrix adjust., Identities:108/271(40%), Positives:168/271(61%), Gaps:2/271(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I EA+ +H+K+HS+ + L E+NLP +VA+EI +CP C I GE + GQ+ P I Sbjct 1175 FLDGINEAQEDHDKYHSNWKALADEYNLPPVVAKEIIAQCPKCHIKGEAIHGQVDYSPEI 1234 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+I+V +HV SG+I A++I +ET T +L+L V ++ TDNGPN Sbjct 1235 WQIDCTHLEGKVIIVAVHVASGFIEAEVIPEETGRETAYFILKLAGRWPVKKIHTDNGPN 1294 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + ++H+FGIP NPQSQ +VE++N LK I++ + L A+ +AV Sbjct 1295 FTSTAVKAACWWAQIQHEFGIPYNPQSQGVVESMNKQLKQIIEQVRDQAEQLRTAVIMAV 1354 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQD-YFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 + NFKR+G IG E L + IQ K+Q +YY+D +D WKGP R Sbjct 1355 YIHNFKRKGGIGEYTAGERLLDILTTNIQTKQLQKQILKVQNFRVYYRDARDPIWKGPAR 1414 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPE 272 + + G+G+V++K+ E ++PRR + + E Sbjct 1415 LLWKGEGAVVIKEGED-IKVVPRRKAKIIKE 1444 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15833.3 Length: 1465 Range 1: 1170 to 1435 Score:203 bits(517), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H + + L +F +P++VA++I C C+ GE + GQ+ G Sbjct 1170 FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQQKGEAIHGQVNADLGT 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ V ++G++ FG+P NPQSQ +VE +NH LK I + + S++ + +A Sbjct 1290 FTSPSVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSIETVVLMAT 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + +F A K Q +YY++ +D+ WKGP Sbjct 1350 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFFQAKNLKFQNFQVYYREGRDQLWKGPGE 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K + ++PRR + Sbjct 1410 LLWKGEGAVIIKVGTE-IKVVPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 1148 to 1426 Score:203 bits(516), Expect:2e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L VT + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 1156 to 1421 Score:203 bits(516), Expect:2e-59, Method:Compositional matrix adjust., Identities:105/270(39%), Positives:169/270(62%), Gaps:8/270(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ H K+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1156 FLEKIEPAQEEHSKYHSNIKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNSDLGT 1215 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1216 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1275 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++H FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1276 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 1335 Query 183 HSLNFKRRGRIGGMAPYE----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKG 238 H +NFKRRG IG M P E ++ ++ ++ Q ++ K + +YY++ +D+ WKG Sbjct 1336 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 1392 Query 239 PMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 P + + G+G+V+LK ++PRR + Sbjct 1393 PGELLWKGEGAVILK-VGTDIKVVPRRKAK 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04584.3 Length: 1464 Range 1: 1172 to 1437 Score:203 bits(516), Expect:2e-59, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F +P +VA +I C C+ GE + GQ+ G Sbjct 1172 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQKGEAIHGQVNAELGT 1231 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1232 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1291 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +A+ Sbjct 1292 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAI 1351 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +D+ WKGP Sbjct 1352 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKDFRVYFREGRDQLWKGPGE 1411 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+VL+K +IPRR + Sbjct 1412 LLWKGEGAVLVKVGTD-IKIIPRRKAK 1437 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12502.2 Length: 1449 Range 1: 1157 to 1422 Score:202 bits(514), Expect:4e-59, Method:Compositional matrix adjust., Identities:106/267(40%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ +IE A+ HEK+HS+ + L +F LP++VA++I C C GE + GQ+ G Sbjct 1157 FLKKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGT 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QET T +L+L +T L TDNG N Sbjct 1217 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++ FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1277 FTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAV 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYF-SAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + F + K + +YY++ +D+ WKGP Sbjct 1337 HCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGE 1396 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK + ++PRR + Sbjct 1397 LLWKGEGAVILKVGTE-IKVVPRRKAK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 1149 to 1414 Score:202 bits(514), Expect:4e-59, Method:Compositional matrix adjust., Identities:109/268(41%), Positives:164/268(61%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ +HEK+HS+ + L ++F LP +VA+EI CP C I GE GQ+ P I Sbjct 1149 FLEGIDQAQEDHEKYHSNWRALASDFGLPPIVAKEIIASCPKCHIKGEATHGQVDYSPEI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV S +I A++I ET T +L+L + V + TDNGPN Sbjct 1209 WQMDCTHLEGKIIIVAVHVASDFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + M+ + G++H+FGIP NPQSQ +VE +N LK IQ+ + L A+ +AV Sbjct 1269 FTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E L + +IQ K+ +YY+D +D WKGP + Sbjct 1329 FVHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQILKINNFRVYYRDSRDPIWKGPAQ 1388 Query 242 VEYWGQGSVLLKDEEKGYF-LIPRRHIR 268 + + G+G+V+++D KG ++PRR + Sbjct 1389 LLWKGEGAVVIQD--KGDIKVVPRRKAK 1414 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P05897.3 Length: 1448 Range 1: 1156 to 1421 Score:201 bits(512), Expect:7e-59, Method:Compositional matrix adjust., Identities:104/270(39%), Positives:168/270(62%), Gaps:8/270(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ H+K+HS+ + L +F LP++VA +I C C GE + GQ+ G Sbjct 1156 FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGT 1215 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKI++V +HV SG+I A++I QET T +L+L +T L TDNG N Sbjct 1216 WQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGAN 1275 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V + G++H FG+P NPQSQ +VE +NH LK I + + S++ + +AV Sbjct 1276 FASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAV 1335 Query 183 HSLNFKRRGRIGGMAPYE----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKG 238 H +NFKRRG IG M P E ++ ++ ++ Q ++ K + +YY++ +D+ WKG Sbjct 1336 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS---KFKNFRVYYREGRDQLWKG 1392 Query 239 PMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 P + + G+G+V+LK ++PRR + Sbjct 1393 PGELLWKGEGAVILK-VGTDIKVVPRRKAK 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 1144 to 1409 Score:201 bits(512), Expect:8e-59, Method:Compositional matrix adjust., Identities:107/267(40%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I +A+ HEK+HS+ + + +EFNLP +VA+EI C C++ GE GQ+ PGI Sbjct 1144 FLDGINKAQEEHEKYHSNWRAMASEFNLPPIVAKEIVASCDKCQLKGEATHGQVDCSPGI 1203 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1204 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1263 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1264 FISNTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1323 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1324 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIMKIQNFRVYYRDSRDPIWKGPAK 1383 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+L+D ++PRR ++ Sbjct 1384 LLWKGEGAVVLQDNSD-IKVVPRRKVK 1409 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 1147 to 1416 Score:201 bits(511), Expect:9e-59, Method:Compositional matrix adjust., Identities:110/280(39%), Positives:168/280(60%), Gaps:20/280(7%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ +HEK+HS+ + L +EF LP +VA+EI CP C I GE + GQ+ P + Sbjct 1147 FLEGIDQAQEDHEKYHSNWKALASEFGLPPVVAKEIIASCPKCHIKGEAIHGQVDCSPEV 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SG+I A++I ET T +L+L + V + TDNGPN Sbjct 1207 WQIDCTHMEGKIIIVAVHVASGFIEAEVIPAETGQETAYFLLKLAARWPVKVIHTDNGPN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + M+ + ++H+FGIP NPQSQ +VE +N LK IQ+ + L A+ +AV Sbjct 1267 FTSTTMKAACWWANIQHEFGIPYNPQSQGVVEAMNKELKSIIQQVRDQAEHLRTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQ---------WIYYKDQKD 233 NFKR+G IGG E RI D ++ Q + Q +YY+D +D Sbjct 1327 FVHNFKRKGGIGGYTAGE--------RIIDILASQIQTTELQKQILKXHKFRVYYRDSRD 1378 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYF-LIPRRHIRRVPE 272 WKGP ++ + G+G+V+++D KG ++PRR + + E Sbjct 1379 PIWKGPAQLLWKGEGAVVIQD--KGDIKVVPRRKAKIIRE 1416 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 1150 to 1428 Score:201 bits(511), Expect:9e-59, Method:Compositional matrix adjust., Identities:108/280(39%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++ I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1150 FLNGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1209 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1210 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1269 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N+ LK I + + L A+ +AV Sbjct 1270 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 1329 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D KD WKGP + Sbjct 1330 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAK 1389 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1390 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1428 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 1160 to 1438 Score:201 bits(511), Expect:9e-59, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 1147 to 1425 Score:201 bits(510), Expect:1e-58, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1147 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1207 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N+ LK I + + L A+ +AV Sbjct 1267 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1327 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAK 1386 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1387 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1425 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106] Sequence ID: Q9IDV9.3 Length: 1449 Range 1: 1158 to 1423 Score:201 bits(510), Expect:1e-58, Method:Compositional matrix adjust., Identities:105/267(39%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D IE+A+ HE++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PG+ Sbjct 1158 FLDGIEKAQEEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQINCSPGV 1217 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNGPN Sbjct 1218 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 1277 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ VE++N LK I + + L A+ +AV Sbjct 1278 FISATVKAACWWAGIKQEFGIPYNPQSQGAVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1337 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E + + IQ K+Q +YY+D +D WKGP + Sbjct 1338 FIHNFKRKGGIGGXTAGERIIDIIATDIQTTKLQTQILKVQNFXVYYRDSRDPIWKGPAK 1397 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D ++PRR + Sbjct 1398 LLWKGEGAVVIQD-NGDIKVVPRRKAK 1423 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18042.4 Length: 1464 Range 1: 1172 to 1437 Score:201 bits(510), Expect:2e-58, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:164/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++RIE A+ HEK+HS+ + L +F +P++VA +I C C+ GE + GQ+ G+ Sbjct 1172 FLERIEPAQEEHEKYHSNMKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV 1231 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1232 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGSN 1291 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1292 FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 1351 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + + +YY++ +D+ WKGP Sbjct 1352 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 1411 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K +IPRR + Sbjct 1412 LLWKGDGAVIVK-VGADIKVIPRRKAK 1437 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 1148 to 1426 Score:200 bits(509), Expect:2e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ ++E++N LK I + + L A+ +AV Sbjct 1268 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 1149 to 1427 Score:200 bits(508), Expect:3e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1329 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 1388 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1389 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05895.2 Length: 1467 Range 1: 1177 to 1442 Score:200 bits(508), Expect:3e-58, Method:Compositional matrix adjust., Identities:107/268(40%), Positives:167/268(62%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IEEA+ HE++H++ + L + LP++VA+EI CP C+I GE V GQ+ PG Sbjct 1177 FLEKIEEAQEKHERYHNNWKNLADTYGLPQIVAKEIVAMCPKCQIKGEPVHGQVDASPGT 1236 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH + K+++V +HV SG+I A++I +ET T K +L++LS +T+L TDNGPN Sbjct 1237 WQMDCTHLEKKVVIVAVHVASGFIEAEVIPRETGKETAKFLLKILSRWPITQLHTDNGPN 1296 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++ + + ++H GIP NPQSQ +E++N LK I K + + A+ +A Sbjct 1297 FTSQEVAAICWWGKIEHTTGIPYNPQSQGSIESMNKQLKEIIGKIRDDCQYTEAAVLMAC 1356 Query 183 HSLNFKRRGRIGGMAPYELLAQ--QESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 NFKR+G IGG E L L IQ + I QK+ +YY++ +D WKGP Sbjct 1357 ILHNFKRKGGIGGQTSAERLINIITTQLEIQHLQTKI-QKILNFRVYYREGRDPVWKGPA 1415 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 ++ + G+G+V+LKD ++PRR + Sbjct 1416 QLIWKGEGAVVLKDGSD-LKVVPRRKAK 1442 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 1148 to 1426 Score:199 bits(507), Expect:4e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHTNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 1160 to 1438 Score:199 bits(507), Expect:4e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12451.3 Length: 1462 Range 1: 1170 to 1435 Score:199 bits(506), Expect:4e-58, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:165/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 +++RIE A+ H K+HS+ + L +F LP +VA +I C C+ GE + GQ+ G Sbjct 1170 FLERIEPAQEEHGKYHSNVKELAHKFGLPNLVARQIVNTCAQCQQKGEAIHGQVNAELGT 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I++ + +++ + +AV Sbjct 1290 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIERIREQANTMETIVLMAV 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +++ W+GP Sbjct 1350 HCMNFKRRGGIGDMTPVERLVNMITTEQEIQFLQAKNSKLKNFRVYFREGRNQLWQGPGE 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K +IPRR + Sbjct 1410 LLWKGDGAVIVK-VGTDIKVIPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 1148 to 1426 Score:199 bits(506), Expect:5e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04587.3 Length: 1447 Range 1: 1160 to 1438 Score:199 bits(506), Expect:5e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1160 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1219 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1220 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1279 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1280 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1339 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1340 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1399 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1400 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1438 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 1145 to 1423 Score:199 bits(505), Expect:7e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1145 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1204 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1205 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 1264 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1265 FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1324 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1325 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAK 1384 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR ++ + + GD+ Sbjct 1385 LLWKGEGAVVIQDNSD-IKVVPRRKVKIIRDYGKQMAGDD 1423 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 1148 to 1426 Score:198 bits(504), Expect:8e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:166/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1328 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1388 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991] Sequence ID: Q9Q720.3 Length: 1436 Range 1: 1149 to 1414 Score:198 bits(504), Expect:8e-58, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:165/275(60%), Gaps:18/275(6%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A++ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQVQHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKMIHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + + +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSAAVKAACWWADIHQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLRTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSA-IPQK--------LQAQWIYYKDQKD 233 NFKR+G IGG + E RI D + IP K +Q +YY+D +D Sbjct 1329 FIHNFKRKGGIGGYSARE--------RIIDIIATDIPTKELQKQISQIQKFRVYYRDSRD 1380 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 WKGP ++ + G+G+V+++D + ++PRR + Sbjct 1381 PIWKGPAKLLWKGEGAVVIQDNSE-IKVVPRRKAK 1414 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 1153 to 1431 Score:198 bits(504), Expect:9e-58, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1153 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1212 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1213 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVVHTDNGSN 1272 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1273 FTSAAVKAACWWANIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1332 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1333 FIHNFKRKGGIGGYSAGERIIDMIATDIQTKELQKQITKIQNFRVYYRDNRDPIWKGPAK 1392 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1393 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1431 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05959.3 Length: 1436 Range 1: 1149 to 1427 Score:198 bits(503), Expect:1e-57, Method:Compositional matrix adjust., Identities:107/280(38%), Positives:167/280(59%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1149 FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1208 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1209 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1268 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1269 FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQLKQIIGQVRDQAEHLKTAVQMAV 1328 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKG + Sbjct 1329 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGHAK 1388 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1389 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22382.2 Length: 1441 Range 1: 1157 to 1422 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:103/268(38%), Positives:169/268(63%), Gaps:4/268(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++ IE A+ HEK+HS+ LR +F+LP +VA++I + C C GE + GQ G+ Sbjct 1157 FLQNIEPAQEEHEKYHSNEAQLREKFHLPALVAKQIVQSCSKCCHHGEPIKGQTDASLGV 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH + +II+V +HV SG++ A++I+ ET T + +L+L + +++L TDNGPN Sbjct 1217 WQIDCTHLENQIIIVAVHVASGFMKAEVITAETGKKTAEFLLKLAAQWPISKLHTDNGPN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q++E + ++G++H FGIP NPQSQ +VEN N LK I+K + L A+++A Sbjct 1277 FTSQEVETMCWWLGIEHTFGIPYNPQSQGVVENKNKYLKELIEKIREDCKELKTAVAMAT 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQ--QESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPM 240 NFK+RG +GGM E + L Q + I + L + +Y+++ +D+ WKGP Sbjct 1337 FIHNFKQRGGLGGMTAGERIVNMINTELEYQYQQNQISKNLNFK-VYFREGRDQLWKGPG 1395 Query 241 RVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+LK +E+ ++PRR + Sbjct 1396 ILLWKGEGAVVLKYQEE-IKIVPRRKCK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24740.3 Length: 1428 Range 1: 1141 to 1419 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+H + + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1141 FLDGIDKAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGI 1200 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1201 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1260 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ V + ++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1261 FTSAAVKAVCWWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1320 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1321 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPIWKGPAK 1380 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D ++PRR + + + GD+ Sbjct 1381 LLWKGEGAVVIQDNSD-IKVVPRRKAKIIRDYGKQMAGDD 1419 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY3.3 Length: 1430 Range 1: 1143 to 1408 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:104/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1143 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI 1202 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1203 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGTN 1262 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + GVK +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1263 FTSTVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1322 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ +Q +YY+D ++ WKGP + Sbjct 1323 FIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQILNIQKFRVYYRDSREPIWKGPAK 1382 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D + ++PRR + Sbjct 1383 LLWKGEGAVVIQDNSE-IKVVPRRKAK 1408 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_EHO] Sequence ID: Q89928.3 Length: 1464 Range 1: 1169 to 1434 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:101/267(38%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H++ + L +F +P++VA +I C C+ GE + GQ+ G Sbjct 1169 FLEKIEPAQEEHEKYHNNVKELVHKFGIPQLVARQIVNSCDKCQQKGEAIHGQVNSELGT 1228 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I QET T +L+L S +T L TDNG N Sbjct 1229 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGAN 1288 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q ++ ++G++ FG+P NP+SQ +VE +NH LK I + + S++ + +A Sbjct 1289 FTSQDVKMAAWWIGIEQTFGVPYNPESQGVVEAMNHHLKNQIDRIRDQAVSIETVVLMAT 1348 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQ-KLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E + + + F K Q +YY++ +D+ WKGP Sbjct 1349 HCMNFKRRGGIGDMTPAERIVNMITTEQEIQFLQTKNLKFQNFRVYYREGRDQLWKGPGD 1408 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K + +IPRR + Sbjct 1409 LLWKGEGAVIIKVGTE-IKVIPRRKAK 1434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04589.3 Length: 1435 Range 1: 1148 to 1426 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1208 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G+K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKRR IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1328 FIHNFKRRRGIGGYSAGERIIDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPIWKGPAK 1387 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D+ ++PRR ++ + + GD+ Sbjct 1388 LLWKGEGAVVIQDKSD-IKVVPRRKVKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05962.3 Length: 1461 Range 1: 1169 to 1434 Score:197 bits(500), Expect:3e-57, Method:Compositional matrix adjust., Identities:101/267(38%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS+ + L +F +PK+VA +I C + GE + GQ+ G Sbjct 1169 FLEKIEPAQEEHEKYHSNIKELSHKFGIPKLVARQIVNTCAHVQQKGEAIHGQVNAELGT 1228 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GK+I+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1229 WQMDCTHLEGKVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1288 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1289 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTVETIVLMAV 1348 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E + + + + A KL+ +Y+++ +D+ WKGP Sbjct 1349 HCMNFKRRGGIGDMTPAERIINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 1408 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K + ++PRR + Sbjct 1409 LLWKGDGAVIVKVGTE-IKVVPRRKAK 1434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ1.3 Length: 1434 Range 1: 1147 to 1425 Score:196 bits(499), Expect:3e-57, Method:Compositional matrix adjust., Identities:106/280(38%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1147 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1206 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET +L+L V + TDNG N Sbjct 1207 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVKIIHTDNGSN 1266 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1267 FTSAVVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1326 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +Y++D +D WKGP + Sbjct 1327 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYFRDSRDPVWKGPAK 1386 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D + +IPRR + + + GD+ Sbjct 1387 LLWKGEGAVVIQDNNE-IKVIPRRKAKIIRDYGKQMAGDD 1425 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280] Sequence ID: Q9WC54.3 Length: 1432 Range 1: 1145 to 1410 Score:196 bits(499), Expect:4e-57, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ +HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1145 FLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1204 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET +L+L V + TDNG N Sbjct 1205 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAFFILKLAGRWPVKVIHTDNGSN 1264 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1265 FTSGAVKAACWWADIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1324 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1325 FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK 1384 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D + ++PRR + Sbjct 1385 LPWKGEGAVVIQDNSE-IKVVPRRKAK 1410 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz GAB1] Sequence ID: P17283.2 Length: 1384 Range 1: 1097 to 1362 Score:196 bits(499), Expect:4e-57, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I+ A+ HE++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1097 FLDGIDRAQEEHERYHSNWKAMASDFNLPPIVAKEIVAHCDKCQVKGEAMHGQVDCSPGI 1156 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+I+V +HV SGYI A++I ET T +L+L V + TDNGPN Sbjct 1157 WQVDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPN 1216 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1217 FTSAAVKAACWWADIKQEFGIPYNPQSQGVVESLNKELKKIIGQVRDQAEHLKTAVQMAV 1276 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E + + IQ K+Q +YY+D +D WKGP Sbjct 1277 FIHNFKRKGGIGGYTAGERIIDIIATDIQTSELQKQILKVQKFRVYYRDSRDPIWKGPAT 1336 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D+ + ++PRR + Sbjct 1337 LLWKGEGAVVIQDQGE-LKVVPRRKAK 1362 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173] Sequence ID: Q9WC63.3 Length: 1432 Range 1: 1145 to 1410 Score:196 bits(499), Expect:4e-57, Method:Compositional matrix adjust., Identities:103/267(39%), Positives:162/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1145 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1204 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV SGYI A++I ET +L+L V + TDNG N Sbjct 1205 WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAFFILKLAGGWPVKAIHTDNGSN 1264 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1265 FTSGAVKAACWWADIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1324 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1325 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK 1384 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D + ++PRR + Sbjct 1385 LLWKGEGAVVIQDNSE-IKVVPRRKAK 1410 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220] Sequence ID: Q75002.3 Length: 1439 Range 1: 1152 to 1417 Score:196 bits(498), Expect:5e-57, Method:Compositional matrix adjust., Identities:107/275(39%), Positives:163/275(59%), Gaps:18/275(6%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+HS+ + + EFN+P +V +EI C C++ GE + GQ+ PGI Sbjct 1152 FLDGIDKAQEEHEKYHSNWRAMANEFNIPPVVPKEIVACCDKCQLKGEAIHGQVNCSPGI 1211 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1212 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVRVIHTDNGSN 1271 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1272 FTSNAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1331 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQ---------KLQAQWIYYKDQKD 233 NFKRRG IGG + E RI D ++ Q K+Q +YY+D +D Sbjct 1332 FIHNFKRRGGIGGYSAGE--------RIIDIIASDIQTKELQNQILKIQNFRVYYRDSRD 1383 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 WKGP ++ + G+G+V+++D ++PRR + Sbjct 1384 PIWKGPAKLLWKGEGAVVIQDNSD-IKVVPRRKAK 1417 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ5.3 Length: 1430 Range 1: 1143 to 1421 Score:196 bits(498), Expect:6e-57, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:169/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1143 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVANCDKCQLKGEAMHGQVDCSPGI 1202 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1203 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 1262 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FG+P NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1263 FTSTVVKAACWWAGIQQEFGVPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1322 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +Y++D +D WKGP + Sbjct 1323 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPVWKGPAK 1382 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D + ++PRR + + + GD+ Sbjct 1383 LLWKGEGAVVIQDNNE-IKVVPRRKAKIIRDYGKQMAGDD 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24107.3 Length: 1462 Range 1: 1170 to 1435 Score:196 bits(498), Expect:6e-57, Method:Compositional matrix adjust., Identities:102/267(38%), Positives:166/267(62%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+H++ + L +F++P++VA +I C + GE + GQ+ G Sbjct 1170 FLEKIEPAQEEHEKYHTNVKELCHKFDIPQLVARQIVNTCAQYQQKGEAIHGQVNAEVGT 1229 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMDCTH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNG N Sbjct 1230 WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGAN 1289 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1290 FTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAV 1349 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + A KL+ +Y+++ +D+ WKGP Sbjct 1350 HCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSKLKNFRVYFREGRDQLWKGPGE 1409 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G G+V++K +IPRR + Sbjct 1410 LLWKGDGAVIVK-VGTDIKIIPRRKAK 1435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165] Sequence ID: O89940.3 Length: 1433 Range 1: 1146 to 1411 Score:196 bits(497), Expect:7e-57, Method:Compositional matrix adjust., Identities:102/267(38%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HE++H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1146 FLDGIDKAQEEHERYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1205 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SGYI A++I ET T +L+L VT + TDNG N Sbjct 1206 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTVIHTDNGSN 1265 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + + +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1266 FTSAAVKAACWWANITQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1325 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D +D WKGP + Sbjct 1326 FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAK 1385 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D + ++PRR + Sbjct 1386 LLWKGEGAVVIQDNNE-IKVVPRRKAK 1411 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020] Sequence ID: O89290.3 Length: 1430 Range 1: 1143 to 1421 Score:196 bits(497), Expect:7e-57, Method:Compositional matrix adjust., Identities:104/280(37%), Positives:168/280(60%), Gaps:2/280(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FN+P +VA+EI C C++ GE + GQ+ PGI Sbjct 1143 FLDGIDKAQEEHEKYHNNWRAMASDFNIPAVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1202 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNG N Sbjct 1203 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN 1262 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1263 FTSATVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1322 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + IQ K+Q +YY+D +D WKGP + Sbjct 1323 FIHNFKRKGGIGGYSAGERTIDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK 1382 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V+++D + ++PRR + + + GD+ Sbjct 1383 LLWKGEGAVVIQDNSE-IKVVPRRKAKIIRDYGKQMAGDD 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083] Sequence ID: O41798.3 Length: 1435 Range 1: 1148 to 1413 Score:195 bits(496), Expect:9e-57, Method:Compositional matrix adjust., Identities:105/275(38%), Positives:165/275(60%), Gaps:18/275(6%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKII+V +HV SGYI A++I ET T +L+L V + TDNGPN Sbjct 1208 WQLDCTHLEGKIIIVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGPN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + + +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FISAAVKAACWWANITQEFGIPYNPQSQGVVESMNKELKKIIGQVGDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQ---------KLQAQWIYYKDQKD 233 NFKR+G IGG + E RI D ++ Q K+Q +YY+D +D Sbjct 1328 FIHNFKRKGGIGGYSAGE--------RIIDIIASDIQTKELQKQIIKIQNFRVYYRDSRD 1379 Query 234 KKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIR 268 WKGP ++ + G+G+V+++D + ++PRR + Sbjct 1380 PIWKGPAKLLWKGEGAVVIQDNNE-IKVVPRRKAK 1413 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30] Sequence ID: O91080.3 Length: 1449 Range 1: 1158 to 1423 Score:195 bits(496), Expect:1e-56, Method:Compositional matrix adjust., Identities:102/267(38%), Positives:161/267(60%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D IE+A+ +H+++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PG+ Sbjct 1158 FLDGIEKAQEDHDRYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVNCSPGV 1217 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNG N Sbjct 1218 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1277 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ VE++N LK I + + L A+ +AV Sbjct 1278 FTSATVKAACWWANIKQEFGIPYNPQSQGAVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1337 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E + + IQ K+Q +YY+D +D WKGP + Sbjct 1338 FIHNFKRKGGIGGYTAGERIIDIIATDIQTTNLQTQILKVQNFRVYYRDSRDPIWKGPAK 1397 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D ++PRR + Sbjct 1398 LLWKGEGAVVIQD-NGDIKVVPRRKAK 1423 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ9.2 Length: 1429 Range 1: 1143 to 1420 Score:194 bits(494), Expect:2e-56, Method:Compositional matrix adjust., Identities:105/280(38%), Positives:168/280(60%), Gaps:3/280(1%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1143 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGI 1202 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGYI A++I ET T +L+L V + TDNG N Sbjct 1203 WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRVIHTDNGSN 1262 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + +K +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1263 FTSAVVKAACWWADIKQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV 1322 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1323 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSREPIWKGPAK 1382 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 + + G+G+V++++ E ++PRR + + + GD+ Sbjct 1383 LLWKGEGAVVIQNSE--IKVVPRRKAKIIRDYGKQMAGDD 1420 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18096.4 Length: 1550 Range 1: 1171 to 1436 Score:194 bits(494), Expect:2e-56, Method:Compositional matrix adjust., Identities:101/267(38%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++++IE A+ HEK+HS + L +F +P +VA +I C C+ GE + GQ+ G+ Sbjct 1171 FLEKIEPAQEEHEKYHSIIKELTHKFGIPLLVARQIVNSCAQCQQKGEAIHGQVNAEIGV 1230 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQMD TH +GKII+V +HV SG+I A++I QE+ T +L+L S +T L TDNGPN Sbjct 1231 WQMDYTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN 1290 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F +Q+++ V ++G++ FG+P NPQSQ +VE +NH LK I + + +++ + +AV Sbjct 1291 FTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV 1350 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQ-DYFSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 H +NFKRRG IG M P E L + + + + +YY++ +D+ WKGP Sbjct 1351 HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGE 1410 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V++K ++PRR + Sbjct 1411 LLWKGEGAVIVKVGTD-IKVVPRRKAK 1436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850] Sequence ID: Q9QSR3.3 Length: 1430 Range 1: 1143 to 1408 Score:194 bits(494), Expect:2e-56, Method:Compositional matrix adjust., Identities:102/267(38%), Positives:163/267(61%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HEK+H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1143 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1202 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GK+ILV +HV S YI A++I ET T +L+L V + TDNG N Sbjct 1203 WQLDCTHLEGKVILVAVHVASEYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN 1262 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + G++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1263 FTSAAVKASCWWAGIQQEFGIPYNPQSQGVVESINKELKKIIGQVRDQAEHLKTAVQMAV 1322 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG + E + S IQ K+Q +YY+D ++ WKGP + Sbjct 1323 FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQITKIQNFRVYYRDSRNPVWKGPAK 1382 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D + ++PRR + Sbjct 1383 LLWKGEGAVVIQDNSE-IKIVPRRKAK 1408 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505] Sequence ID: Q1A249.3 Length: 1448 Range 1: 1157 to 1422 Score:193 bits(491), Expect:5e-56, Method:Compositional matrix adjust., Identities:100/267(37%), Positives:160/267(59%), Gaps:2/267(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HE++HS+ + + ++FNLP +VA+EI C C++ GE + GQ+ PG+ Sbjct 1157 FLDGIDKAQEEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQINCSPGV 1216 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +GKIILV +HV SGY+ A++I ET T +L+L V + TDNG N Sbjct 1217 WQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN 1276 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + ++ +FGIP NPQSQ VE++N LK I + + L A+ +AV Sbjct 1277 FTSATVKAACWWANIQQEFGIPYNPQSQGAVESMNKELKKIIGQIRDQAEHLKTAVQMAV 1336 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMR 241 NFKR+G IGG E + + IQ K+Q +YY+D ++ WKGP + Sbjct 1337 FIHNFKRKGGIGGYTAGERIIDIIATDIQTTKLQTQILKVQNFRVYYRDSREPTWKGPAK 1396 Query 242 VEYWGQGSVLLKDEEKGYFLIPRRHIR 268 + + G+G+V+++D ++PRR + Sbjct 1397 LLWKGEGAVVIQD-NGDIKVVPRRKAK 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056] Sequence ID: O93215.4 Length: 1435 Range 1: 1148 to 1426 Score:193 bits(490), Expect:6e-56, Method:Compositional matrix adjust., Identities:104/284(37%), Positives:172/284(60%), Gaps:10/284(3%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 ++D I++A+ HE++H++ + + ++FNLP +VA+EI C C++ GE + GQ+ PGI Sbjct 1148 FLDGIDKAQEEHERYHNNWRAVASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI 1207 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ+DCTH +G++ILV +HV SGYI A++I ET T +L+L S V + TDNG N Sbjct 1208 WQLDCTHLEGQVILVAVHVASGYIEAEVIPAETGKETAYFLLKLASRWPVKVIHTDNGSN 1267 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + ++ + ++ +FGIP NPQSQ +VE++N LK I + + L A+ +AV Sbjct 1268 FTSAAVKAACWWADIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV 1327 Query 183 HSLNFKRRGRIGGMAPYE-----LLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWK 237 NFKR+G IGG + E + ++ +Q S I QK + +YY+D +D WK Sbjct 1328 FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISNI-QKFR---VYYRDSRDPIWK 1383 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 GP ++ + G+G+V+++D + ++PRR + + + GD+ Sbjct 1384 GPAKLLWKGEGAVVIQDNSE-IKVVPRREAKIIRDYGKQMAGDD 1426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=p2L; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p3; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Bovine immunodeficiency virus R29] Sequence ID: P19560.2 Length: 1475 Range 1: 1195 to 1466 Score:182 bits(462), Expect:3e-52, Method:Compositional matrix adjust., Identities:103/276(37%), Positives:162/276(58%), Gaps:7/276(2%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC-RIIGEQVGGQLKIG 59 + +++ I A +HE++H+ P L +F+LPK +A+EI +C C R V G G Sbjct 1195 TCFLENIPSATEDHERWHTSPDILVRQFHLPKRIAKEIVARCQECKRTTTSPVRGTNPRG 1254 Query 60 PGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDN 119 +WQMD TH++ II V + SG + AQ+I +ETA +LQL+ + V L +DN Sbjct 1255 RFLWQMDNTHWNKTIIWVAVETNSGLVEAQVIPEETALQVALCILQLIQRYTVLHLHSDN 1314 Query 120 GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALS 179 GP F ++E + Y+G+ GIP NPQSQ +VE + LK + + + +++ ALS Sbjct 1315 GPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALS 1374 Query 180 LAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSA--IPQKLQAQWIYYKDQKDKKWK 237 LA+ SLN K+RG IGG PYE+ + E + QD QK++ +W Y ++++ K+WK Sbjct 1375 LALVSLN-KKRGGIGGHTPYEIYLESEHTKYQDQLEQQFSKQKIE-KWCYVRNRR-KEWK 1431 Query 238 GPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEP 273 GP +V + G G+ ++++E K L P RH+R +P P Sbjct 1432 GPYKVLWDGDGAAVIEEEGKTA-LYPHRHMRFIPPP 1466 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (CLONE 1369)] Sequence ID: P11204.1 Length: 1146 Range 1: 876 to 1145 Score:182 bits(462), Expect:3e-52, Method:Compositional matrix adjust., Identities:97/271(36%), Positives:149/271(54%), Gaps:1/271(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 WV+ I+EA+ HE +H+ P+ L + +P VA++I ++CP C G G + P Sbjct 876 WVENIQEAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNH 935 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ DCTH D KIIL + SGYI A ++S+E A CT A+L+ + L TDNG N Sbjct 936 WQADCTHLDNKIILTFVESNSGYIHATLLSKENALCTSLAILEWARLFSPKSLHTDNGTN 995 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + + +L ++ + H GIP +P+SQ +VE N TLK IQ T +L+ AL LA+ Sbjct 996 FVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDNTQTLEAALQLAL 1055 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRV 242 + N K R +GG P+E+ ++ I + + ++ +YK + WKGP RV Sbjct 1056 ITCN-KGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRV 1114 Query 243 EYWGQGSVLLKDEEKGYFLIPRRHIRRVPEP 273 + G G+V++ DE KG +P + + +P Sbjct 1115 LWKGDGAVVVNDEGKGIIAVPLTRTKLLIKP 1145 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (clone CL22)] Sequence ID: P32542.1 Length: 1146 Range 1: 876 to 1145 Score:182 bits(462), Expect:3e-52, Method:Compositional matrix adjust., Identities:97/271(36%), Positives:149/271(54%), Gaps:1/271(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 WV+ I+EA+ HE +H+ P+ L + +P VA++I ++CP C G G + P Sbjct 876 WVENIQEAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNH 935 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ DCTH D KIIL + SGYI A ++S+E A CT A+L+ + L TDNG N Sbjct 936 WQADCTHLDNKIILTFVESNSGYIHATLLSKENALCTSLAILEWARLFSPKSLHTDNGTN 995 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + + +L ++ + H GIP +P+SQ +VE N TLK IQ T +L+ AL LA+ Sbjct 996 FVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDNTQTLEAALQLAL 1055 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRV 242 + N K R +GG P+E+ ++ I + + ++ +YK + WKGP RV Sbjct 1056 ITCN-KGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRV 1114 Query 243 EYWGQGSVLLKDEEKGYFLIPRRHIRRVPEP 273 + G G+V++ DE KG +P + + +P Sbjct 1115 LWKGDGAVVVNDEGKGIIAVPLTRTKLLIKP 1145 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (ISOLATE WYOMING)] Sequence ID: P03371.1 Length: 1145 Range 1: 875 to 1144 Score:181 bits(458), Expect:1e-51, Method:Compositional matrix adjust., Identities:97/271(36%), Positives:149/271(54%), Gaps:1/271(0%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPGI 62 WV+ I+EA+ HE +H+ P+ L + +P VA++I ++CP C G G + P Sbjct 875 WVENIQEAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNH 934 Query 63 WQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPN 122 WQ DCTH D KIIL + SGYI A ++S+E A CT A+L+ + L TDNG N Sbjct 935 WQADCTHLDNKIILHFVESNSGYIHATLLSKENALCTSLAILEWARLFSPKSLHTDNGTN 994 Query 123 FKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAV 182 F + + +L ++ + H GIP +P+SQ +VE N TLK IQ T +L+ AL LA+ Sbjct 995 FVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDNTQTLEAALQLAL 1054 Query 183 HSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRV 242 + N K R +GG P+E+ ++ I + + ++ +YK + WKGP RV Sbjct 1055 ITCN-KGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRV 1113 Query 243 EYWGQGSVLLKDEEKGYFLIPRRHIRRVPEP 273 + G G+V++ DE KG +P + + +P Sbjct 1114 LWKGDGAVVVNDEGKGIIAVPLTRTKLLIKP 1144 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Jembrana disease virus] Sequence ID: Q82851.1 Length: 1432 Range 1: 1153 to 1423 Score:172 bits(437), Expect:8e-49, Method:Compositional matrix adjust., Identities:99/274(36%), Positives:155/274(56%), Gaps:4/274(1%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC-RIIGEQVGGQLKIG 59 + +++ I +A HEK+H+ + L EF LP+ VA EI +C C R + G Sbjct 1153 TCFIEAIPQAIEEHEKWHTTAEILAREFQLPRRVAREIVHRCQACKRTVSCPRRGTNPRE 1212 Query 60 PGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDN 119 +WQMD TH +GKII V + SG I A++I +E+A V +L L+ + V + +DN Sbjct 1213 RFLWQMDNTHLEGKIIWVAVETNSGLIEARVIPEESAQSIVFCILMLVYRYTVYHIHSDN 1272 Query 120 GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALS 179 GP F QK+E + Y+ + GIP NPQ+QA+VE + +K I F + +++ ALS Sbjct 1273 GPCFIAQKVEALCKYLKITKTTGIPYNPQAQAIVERTHRDIKDKIAAFREDCETVEAALS 1332 Query 180 LAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGP 239 L + +LN K+RG IGG PYE+ + E + Q+ + +W Y +D++ K WKGP Sbjct 1333 LTLVALN-KKRGGIGGHTPYEIYLESEYNKYQEQQNHYNNFKTEKWAYVRDKR-KVWKGP 1390 Query 240 MRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEP 273 +V + G+G+ ++ +E L P RH+R +P P Sbjct 1391 YKVLWDGEGAAVV-EENAMPTLYPHRHMRFIPPP 1423 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Ovine lentivirus (strain SA-OMVV)] Sequence ID: P16901.1 Length: 1086 Range 1: 804 to 1080 Score:163 bits(413), Expect:1e-45, Method:Compositional matrix adjust., Identities:93/279(33%), Positives:158/279(56%), Gaps:8/279(2%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKI 58 + W++ I AE +H K+H D L +F +P+ AE+I ++C VC+ + + G + Sbjct 804 AYWIENIPLAEEDHSKWHQDAGSLHLDFGIPRTAAEDIVQQCEVCQENKMPSTIRGSNRR 863 Query 59 GPGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTD 118 G WQ+D TH++ KIILV + SG I+A+ + ET ++ LQ+D Sbjct 864 GIDHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRIMTIRWYGLFAPKSLQSD 923 Query 119 NGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNAL 178 NGP F + + ++ Y+G+ H GIP NPQSQALVE + TLK I+KF+ S D+A+ Sbjct 924 NGPAFVAEPTQLLMKYLGITHTTGIPWNPQSQALVERTHQTLKNTIEKFVSMFASFDSAI 983 Query 179 SLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD---KK 235 + A+ +LN KR+G +G + +E RIQ + K ++ YY+ +K + Sbjct 984 AAALITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSTRNQSKF--RFCYYRVRKRGHPGE 1041 Query 236 WKGPMRVEYWGQGSVLLKDEE-KGYFLIPRRHIRRVPEP 273 W GP +V + G+G++++KD+ + Y +I ++ ++ +P+P Sbjct 1042 WLGPTQVLWEGEGAIVIKDKNLEKYLVIAKKDVKFIPQP 1080 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS2)] Sequence ID: P23427.2 Length: 1506 Range 1: 1226 to 1500 Score:161 bits(408), Expect:6e-45, Method:Compositional matrix adjust., Identities:92/277(33%), Positives:155/277(55%), Gaps:8/277(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKIGP 60 W++ I AE H K+H D L EF +P+ AE+I ++C VC+ + + G K G Sbjct 1226 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRGI 1285 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 WQ+D TH++ KIILV + SG I+A+ + ET ++ + LQ+DNG Sbjct 1286 DHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNG 1345 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 P F + + ++ Y+G++H GIP NPQSQALVE + TLK ++K +P + ++AL+ Sbjct 1346 PAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAG 1405 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD---KKWK 237 + +LN KR+G +G + +E RIQ + +K+ ++ YY+ +K +W+ Sbjct 1406 TLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSKQEKI--RFCYYRTRKRGHPGEWQ 1463 Query 238 GPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRVPEP 273 GP +V + G G++++KD Y +I + ++ +P P Sbjct 1464 GPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPP 1500 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514)] Sequence ID: P03370.2 Length: 1506 Range 1: 1226 to 1500 Score:161 bits(408), Expect:6e-45, Method:Compositional matrix adjust., Identities:92/277(33%), Positives:155/277(55%), Gaps:8/277(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKIGP 60 W++ I AE H K+H D L EF +P+ AE+I ++C VC+ + + G K G Sbjct 1226 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRGI 1285 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 WQ+D TH++ KIILV + SG I+A+ + ET ++ + LQ+DNG Sbjct 1286 DHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNG 1345 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 P F + + ++ Y+G++H GIP NPQSQALVE + TLK ++K +P + ++AL+ Sbjct 1346 PAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAG 1405 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD---KKWK 237 + +LN KR+G +G + +E RIQ + +K+ ++ YY+ +K +W+ Sbjct 1406 TLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSKQEKI--RFCYYRTRKRGHPGEWQ 1463 Query 238 GPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRVPEP 273 GP +V + G G++++KD Y +I + ++ +P P Sbjct 1464 GPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPP 1500 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna/maedi virus EV1 KV1772] Sequence ID: P35956.2 Length: 1506 Range 1: 1226 to 1500 Score:161 bits(407), Expect:7e-45, Method:Compositional matrix adjust., Identities:92/277(33%), Positives:155/277(55%), Gaps:8/277(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKIGP 60 W++ I AE H K+H D L EF +P+ AE+I ++C VC+ + + G K G Sbjct 1226 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRGI 1285 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 WQ+D TH++ KIILV + SG I+A+ + ET ++ + LQ+DNG Sbjct 1286 DHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNG 1345 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 P F + + ++ Y+G++H GIP NPQSQALVE + TLK ++K +P + ++AL+ Sbjct 1346 PAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAG 1405 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD---KKWK 237 + +LN KR+G +G + +E RIQ + +K+ ++ YY+ +K +W+ Sbjct 1406 TLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSKQEKI--RFCYYRTRKRGHPGEWQ 1463 Query 238 GPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRVPEP 273 GP +V + G G++++KD Y +I + ++ +P P Sbjct 1464 GPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPP 1500 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS1)] Sequence ID: P23426.2 Length: 1506 Range 1: 1226 to 1500 Score:161 bits(407), Expect:7e-45, Method:Compositional matrix adjust., Identities:92/277(33%), Positives:155/277(55%), Gaps:8/277(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKIGP 60 W++ I AE H K+H D L EF +P+ AE+I ++C VC+ + + G K G Sbjct 1226 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRGI 1285 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 WQ+D TH++ KIILV + SG I+A+ + ET ++ + LQ+DNG Sbjct 1286 DHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNG 1345 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 P F + + ++ Y+G++H GIP NPQSQALVE + TLK ++K +P + ++AL+ Sbjct 1346 PAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAG 1405 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD---KKWK 237 + +LN KR+G +G + +E RIQ + +K+ ++ YY+ +K +W+ Sbjct 1406 TLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSKQEKI--RFCYYRTRKRGHPGEWQ 1463 Query 238 GPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRVPEP 273 GP +V + G G++++KD Y +I + ++ +P P Sbjct 1464 GPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPP 1500 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Caprine arthritis encephalitis virus strain Cork] Sequence ID: P33459.1 Length: 1109 Range 1: 830 to 1105 Score:153 bits(387), Expect:4e-42, Method:Compositional matrix adjust., Identities:90/278(32%), Positives:155/278(55%), Gaps:8/278(2%) Query 3 WVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLKIGP 60 W++ I AE +H K+H D + L EF +P+ AE+I +C +C+ + G K G Sbjct 830 WIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEARTPAVIRGGNKRGV 889 Query 61 GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNG 120 WQ+D TH++ I+LV + SG I+A+ + E+ V+ + LQ+DNG Sbjct 890 NHWQVDYTHYENIILLVWVETNSGLIYAEKVKGESGQEFRIKVMHWYALFGPESLQSDNG 949 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSL 180 P F + + ++ Y+GVKH GIP NPQSQA+VE + LK ++KF P+ ++++A++ Sbjct 950 PAFAAEPTQLLMQYLGVKHTTGIPWNPQSQAIVERAHQLLKSTLKKFQPQFVAVESAIAA 1009 Query 181 AVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQK-DKKWKGP 239 A+ ++N KR+G +G + +E RI + ++ QK+ Q+ YY+ +K + G Sbjct 1010 ALVAINIKRKGGLGTSPMDIFIYNKEQKRINNKYNKNSQKI--QFCYYRIRKRGHQESGK 1067 Query 240 MRVEYWGQGS--VLLKD-EEKGYFLIPRRHIRRVPEPC 274 + Y G+G +++KD E + Y +IP + + +P P Sbjct 1068 DQPRYCGKGKEPIVVKDIESEKYLVIPYKDAKFIPPPT 1105 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mason-Pfizer monkey virus] Sequence ID: P07572.2 Length: 1771 Range 1: 1498 to 1763 Score:110 bits(275), Expect:3e-27, Method:Compositional matrix adjust., Identities:83/281(30%), Positives:132/281(46%), Gaps:32/281(11%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG----- 61 +E A+ H H + Q LR FN+P+ A +I ++CP+C + L + P Sbjct 1498 LESAQNAHTLHHLNAQTLRLMFNIPREQARQIVKQCPIC--VTYLPVPHLGVNPRGLFPN 1555 Query 62 -IWQMDCTHF----DGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV-TEL 115 IWQMD TH+ + K I V I SG++ A + + ET + +L S + ++ Sbjct 1556 MIWQMDVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQI 1615 Query 116 QTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQK-----FLPE 170 +TDNGP + ++ + + + +KH GIP NPQ Q +VE + +LK I+K + P Sbjct 1616 KTDNGPGYTSKNFQEFCSTLQIKHITGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYPR 1675 Query 171 TTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKD 230 + N L+ A+ LNF L Q ++ P+K Q + +KD Sbjct 1676 KGTPRNILNHALFILNFLN------------LDDQNKSAADRFWHNNPKK-QFAMVKWKD 1722 Query 231 QKDKKWKGPMRVEYWGQGSVLLKDEE-KGYFLIPRRHIRRV 270 D W GP V WG+GSV + + +P R +R+V Sbjct 1723 PLDNTWHGPDPVLIWGRGSVCVYSQTYDAARWLPERLVRQV 1763 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 1] Sequence ID: P04025.2 Length: 1772 Range 1: 1499 to 1765 Score:108 bits(271), Expect:9e-27, Method:Compositional matrix adjust., Identities:83/283(29%), Positives:134/283(47%), Gaps:34/283(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRI------IGEQVGGQLKIGP 60 +E A+ H H + Q L+ FN+P+ A +I R+CP+C +G G L P Sbjct 1499 LESAQNAHTLHHLNAQTLKLMFNIPREQARQIVRQCPICATYLPVPHLGVNPRGLL---P 1555 Query 61 G-IWQMDCTHF----DGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV-TE 114 IWQMD TH+ + K I V I SG++ A + + ET + +L S + + Sbjct 1556 NMIWQMDVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQ 1615 Query 115 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQK-----FLP 169 ++TDNGP + ++ + + + +KH GIP NPQ Q +VE + +LK I+K + P Sbjct 1616 IKTDNGPGYTSKNFQEFCSTLQIKHVTGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYP 1675 Query 170 ETTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYK 229 + N L+ A+ LNF L Q ++ + P+K Q + +K Sbjct 1676 TKGTPRNILNHALFILNFLN------------LDDQNHSAADRFWHSNPRK-QFAMVKWK 1722 Query 230 DQKDKKWKGPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRVP 271 D D W P V WG+GSV + + +P R ++++P Sbjct 1723 DPLDNTWPWPDPVIIWGRGSVCVYSQTHDAARWLPERLVKQIP 1765 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] Sequence ID: P51517.2 Length: 1768 Range 1: 1489 to 1760 Score:105 bits(263), Expect:1e-25, Method:Compositional matrix adjust., Identities:82/288(28%), Positives:133/288(46%), Gaps:34/288(11%) Query 1 SSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC----RIIGEQVGGQL 56 ++ + EA+ H H + Q LR F + + A +I ++CP C I V + Sbjct 1489 TTLTTNLTEAQTAHALHHLNAQSLRLMFKITREQARQIVKQCPTCVTYLPIPHFGVNPKG 1548 Query 57 KIGPGIWQMDCTHFD--GKIILVGIHVE--SGYIWAQIISQETADCTVKAVLQLLSAHNV 112 + +WQMD TH+ GK+ V + ++ SG++ A + +T + T + LL ++ Sbjct 1549 LVPNMLWQMDVTHYSEFGKLKYVHVSIDTFSGFLVATL---QTGEATKHVIAHLLHCFSI 1605 Query 113 T----ELQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQK-- 166 ++TDNGP + + + + +KH FGIP NPQ Q +VE + +LK ++K Sbjct 1606 IGQPIHIKTDNGPGYTSSNFRAFCSKLHIKHTFGIPYNPQGQGIVERAHLSLKNTLEKIK 1665 Query 167 ---FLPETTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQA 223 + P S N L+ A+ LNF L AQ +S D F K + Sbjct 1666 KGEWYPTQGSPRNILNHALFILNF-----------LNLDAQNKS--AADRFWHTSSKKEY 1712 Query 224 QWIYYKDQKDKKWKGPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRV 270 + +KD D W GP V WG+GSV + + +P R +R+V Sbjct 1713 AMVKWKDPLDNTWHGPDPVLIWGRGSVCVYSQTHDAARWLPERLVRQV 1760 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] Sequence ID: P04026.1 Length: 863 Range 1: 551 to 809 Score:99.4 bits(246), Expect:2e-23, Method:Compositional matrix adjust., Identities:83/275(30%), Positives:127/275(46%), Gaps:32/275(11%) Query 14 HEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC--RIIGEQVGGQLK-IGP-GIWQMDCTH 69 H++FH + LR F L + A EI +C C + +G + I P +WQMD TH Sbjct 551 HKRFHVTAETLRRRFALSRKEAREIVTQCQNCCEFLPTPHMGINPRGIRPLQMWQMDVTH 610 Query 70 FD--GKIILVGIHVE--SGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPNFKN 125 G++ V + V+ SG ++A ++ E A ++ L+ SA ++TDNGP + + Sbjct 611 IPSFGRLQYVHVSVDTCSGVMFATPLTGEKASYVIQHCLEAWSAWGKPRIKTDNGPAYTS 670 Query 126 QKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVW-------IQKFLPETTSLDNAL 178 QK M V H G+P NPQ Q +VE + TLK + I+ LP + A+ Sbjct 671 QKFRQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKSYLIKQKGSIEDVLPSVPRV--AV 728 Query 179 SLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKG 238 S+A+ +LNF G A D S P + + + + +KD WKG Sbjct 729 SMALFTLNFLNCDAQGHTA-------------ADRHSLEPDRPK-EMVKWKDVLTDLWKG 774 Query 239 PMRVEYWGQGSV-LLKDEEKGYFLIPRRHIRRVPE 272 P + +G+V + EE+ IP R RR P Sbjct 775 PDPILIRSRGAVCVFPQEEENPLWIPERLTRRAPS 809 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Squirrel monkey retrovirus] Sequence ID: P03364.3 Length: 1880 Range 1: 1589 to 1856 Score:97.8 bits(242), Expect:5e-23, Method:Compositional matrix adjust., Identities:85/283(30%), Positives:124/283(43%), Gaps:32/283(11%) Query 5 DRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGP---- 60 D I EA H H + LR + + + A +I + C C ++ V L + P Sbjct 1589 DPIHEATQAHTLHHLNAHTLRLLYKITREQARDIVKACKQC-VVATPVP-HLGVNPRGLV 1646 Query 61 --GIWQMDCTHFD--GKIILVGIHVE--SGYIWAQIISQETADCTVKAVLQLLSA-HNVT 113 IWQMD THF GK V + V+ SG+I A + E + + V+ L+ Sbjct 1647 PNAIWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPH 1706 Query 114 ELQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFL--PET 171 ++TDNGP + + + + +KH GIP NPQ Q +VE + TLK + + P Sbjct 1707 TIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRLARSPLG 1766 Query 172 TSLD---NALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYY 228 S+ N LS A+ LNF + G A L Q S Q + + Sbjct 1767 FSMQQPRNLLSHALFQLNFLQLDSQGRSAADRLWHPQTS-------------QQHATVMW 1813 Query 229 KDQKDKKWKGPMRVEYWGQGSVLLKDE-EKGYFLIPRRHIRRV 270 +D WKGP V WG+GS + D+ E G +P R IR + Sbjct 1814 RDPLTSVWKGPDPVLIWGRGSACIYDQKEDGPRWLPERLIRHI 1856 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIAIL3] Sequence ID: P12894.1 Length: 814 Range 1: 509 to 774 Score:91.7 bits(226), Expect:6e-21, Method:Compositional matrix adjust., Identities:79/282(28%), Positives:131/282(46%), Gaps:34/282(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC--RIIGEQVGGQLK-IGP-GI 62 +E A H FH + LR+ F+L + A +I +C C + VG + I P + Sbjct 509 VEAARNFHNNFHVTAETLRSRFSLTRKEARDIVTQCQSCCEFLPVPHVGINPRGIRPLQV 568 Query 63 WQMDCTHFD--GKI--ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTEL-QT 117 WQMD TH GK+ + V I SG ++A ++ E A ++ L+ SA L +T Sbjct 569 WQMDVTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGKPRLLKT 628 Query 118 DNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWI--------QKFLP 169 DNGP + +QK + M V H G+P NPQ Q +VE + TLK ++ ++ +P Sbjct 629 DNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIKQKRGTFEETVP 688 Query 170 ETTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYK 229 + ++SLA+ +LNF G A ++ + P ++ + +K Sbjct 689 RAPRV--SVSLALFTLNFLNIDAHGHTAAERHCSEPDR----------PNEM----VKWK 732 Query 230 DQKDKKWKGPMRVEYWGQGSV-LLKDEEKGYFLIPRRHIRRV 270 + D KW GP + +G++ + E F +P R R++ Sbjct 733 NVLDNKWYGPDPILIRSRGAICVFPQNEDNPFWVPERLTRKI 774 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Jaagsiekte sheep retrovirus] Sequence ID: P31623.2 Length: 1726 Range 1: 1448 to 1720 Score:85.5 bits(210), Expect:8e-19, Method:Compositional matrix adjust., Identities:80/290(28%), Positives:129/290(44%), Gaps:32/290(11%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCR--IIGEQVGGQLK-IGPG-I 62 I+ A +H+ H + LR +F + + A +I + C C + Q G + + P + Sbjct 1448 IDAARKSHDLHHQNSHSLRLQFKISREAARQIVKSCSTCPQFFVLPQYGVNPRGLRPNHL 1507 Query 63 WQMDCTHFDG----KIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTE-LQT 117 WQ D TH K + V I S ++ A + + E+ ++ +L S + + L+T Sbjct 1508 WQTDVTHIPQFGRLKYVHVSIDTFSNFLMASLHTGESTRHCIQHLLFCFSTSGIPQTLKT 1567 Query 118 DNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLK--VWIQKFLPE--TTS 173 DNGP + ++ + + HK GIP NPQ Q +VE + +K + QK E + S Sbjct 1568 DNGPGYTSRSFQRFCLSFQIHHKTGIPYNPQGQGIVERAHQRIKHQLLKQKKGNELYSPS 1627 Query 174 LDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD 233 NAL+ A++ LNF G A ++ S + K +W KD Sbjct 1628 PHNALNHALYVLNFLTLDTEGNSAAQRFWGERSSCK----------KPLVRW---KDPLT 1674 Query 234 KKWKGPMRVEYWGQGSVLL--KDEEKGYFLIPRRHIRRVPEPCALPEGDE 281 W GP V WG+G V + +D E + IP R +R E LP+ + Sbjct 1675 NLWYGPDPVLIWGRGHVCVFPQDAEAPRW-IPERLVRAAEE---LPDASD 1720 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE)] Sequence ID: P04586.1 Length: 148 Range 1: 1 to 139 Score:78.6 bits(192), Expect:4e-18, Method:Compositional matrix adjust., Identities:47/140(34%), Positives:77/140(55%), Gaps:2/140(1%) Query 143 IPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNFKRRGRIGGMAPYELL 202 IP NPQSQ +VE++N LK I + + L A+ +AV NFKR+G IGG + E + Sbjct 1 IPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERI 60 Query 203 AQQESLRIQDY-FSAIPQKLQAQWIYYKDQKDKKWKGPMRVEYWGQGSVLLKDEEKGYFL 261 + IQ K+Q +YY+D +D WKGP ++ + G+G+V+++D + Sbjct 61 IDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSD-IKV 119 Query 262 IPRRHIRRVPEPCALPEGDE 281 +PRR ++ + + GD+ Sbjct 120 VPRRKVKIIRDYGKQMAGDD 139 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 1193 to 1450 Score:81.3 bits(199), Expect:2e-17, Method:Composition-based stats., Identities:78/269(29%), Positives:114/269(42%), Gaps:37/269(13%) Query 35 AEEIRRKCPVCRIIGEQ---VGGQLKIG--PG-IWQMDCTHFDGKIILVGIHVE----SG 84 A I R C CR Q G ++ G P IWQ D THF K L +HV SG Sbjct 1193 ASNILRSCHACRKNNPQHQMPQGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSG 1252 Query 85 YIWAQIISQETADCTVKAVLQLLS-AHNVTELQTDNGPNFKNQKMEGVLNYMGVKHKFGI 143 I A +ET+ + ++LQ ++ + + TDNGP + +Q + + ++H + Sbjct 1253 AISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHV 1312 Query 144 PGNPQSQALVENVNHTLKVWIQKFLPETTSL--DNALSLAVHSLNFKRRGRIGGMAPYEL 201 P NP S LVE N LK + K+ + L DNALS+A+ ++N + Sbjct 1313 PYNPTSSGLVERSNGILKTLLYKYFTDKPDLPMDNALSIALWTINH-----------LNV 1361 Query 202 LAQQESLRIQDYFS----AIPQ-----KLQAQWIYYK--DQKDKKWKGPMRVEYWGQGSV 250 L R Q + S IP+ Q W Y+K ++WKGP G+ Sbjct 1362 LTNCHKTRWQLHHSPRLQPIPETHSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGAA 1421 Query 251 LLKDEEKGYFLIPRRHIRRV--PEPCALP 277 L+ IP R ++R P P P Sbjct 1422 LIPVSASSAQWIPWRLLKRAACPRPVGGP 1450 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 1193 to 1450 Score:81.3 bits(199), Expect:2e-17, Method:Composition-based stats., Identities:80/270(30%), Positives:115/270(42%), Gaps:39/270(14%) Query 35 AEEIRRKCPVCRIIGEQ---VGGQLKIG--PG-IWQMDCTHFDGKIILVGIHVE----SG 84 A I R C CR Q G ++ G P IWQ D THF K L +HV SG Sbjct 1193 ASNILRSCHACRGGNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSG 1252 Query 85 YIWAQIISQETADCTVKAVLQLLSAH--NVTELQTDNGPNFKNQKMEGVLNYMGVKHKFG 142 I A +ET+ + ++LQ + AH + + TDNGP + +Q + + ++H Sbjct 1253 AISATQKRKETSSEAISSLLQAI-AHLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTH 1311 Query 143 IPGNPQSQALVENVNHTLKVWIQKFLPETTSL--DNALSLAVHSLNFKRRGRIGGMAPYE 200 +P NP S LVE N LK + K+ + L DNALS+A+ ++N Sbjct 1312 VPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPMDNALSIALWTINH-----------LN 1360 Query 201 LLAQQESLRIQDYFS----AIPQ-----KLQAQWIYYK--DQKDKKWKGPMRVEYWGQGS 249 +L R Q + S IP+ Q W Y+K ++WKGP G+ Sbjct 1361 VLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGA 1420 Query 250 VLLKDEEKGYFLIPRRHIRRV--PEPCALP 277 L+ IP R ++R P P P Sbjct 1421 ALIPVSASSAQWIPWRLLKRAACPRPVGGP 1450 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 1193 to 1450 Score:80.1 bits(196), Expect:6e-17, Method:Composition-based stats., Identities:75/260(29%), Positives:113/260(43%), Gaps:19/260(7%) Query 35 AEEIRRKCPVCRIIGEQ---VGGQLKIG--PG-IWQMDCTHFDGKIILVGIHVE----SG 84 A I R C CR Q G ++ G P IWQ D THF K L +HV SG Sbjct 1193 ASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSG 1252 Query 85 YIWAQIISQETADCTVKAVLQLLSA-HNVTELQTDNGPNFKNQKMEGVLNYMGVKHKFGI 143 I A +ET+ + ++LQ ++ + + TDNGP + +Q + + ++H + Sbjct 1253 AISATQKRKETSSEAISSLLQAIAQLGKPSYINTDNGPAYISQDFLSMCTSLAIRHTTHV 1312 Query 144 PGNPQSQALVENVNHTLKVWIQKFLPETTSL--DNALSLAVHSLNFKRRGRIGGMAPYEL 201 P NP S LVE N LK + K+ + L DNALS+A+ ++N ++L Sbjct 1313 PYNPTSSGLVERSNGILKTLLYKYFTDRPDLPMDNALSIALWTINHLNVLTHCHKTRWQL 1372 Query 202 LAQQESLRIQDYFSAIPQKLQAQWIYYK--DQKDKKWKGPMRVEYWGQGSVLLKDEEKGY 259 I + S I + Q W Y+K ++WKGP G+ L+ Sbjct 1373 HHSPRLQPIPETHSLISK--QTHWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSANSA 1430 Query 260 FLIPRRHIRRV--PEPCALP 277 IP R +++ P P P Sbjct 1431 QWIPWRLLKQAACPRPAEGP 1450 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 1151 to 1417 Score:79.7 bits(195), Expect:8e-17, Method:Compositional matrix adjust., Identities:73/273(27%), Positives:116/273(42%), Gaps:23/273(8%) Query 14 HEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIG-------PG-IWQM 65 H+ H +P LR A I + C C++I Q G+L G P IWQ Sbjct 1151 HQLTHCNPYALRNH-GATASEAHAIVQACHTCKVINPQ--GRLPQGYIRRGHAPNDIWQG 1207 Query 66 DCTHFDGK----IILVGIHVESGYIWAQIISQET-ADCTVKAVLQLLSAHNVTELQTDNG 120 D TH K +LV + SG + +ET +DC ++ + + TDNG Sbjct 1208 DVTHLQYKRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLVAISILGKPQNINTDNG 1267 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPET--TSLDNAL 178 + +Q+ + N + +KH IP NP S LVE N LK I K+L + L+ A+ Sbjct 1268 AAYLSQEFQQFCNSLAIKHSTHIPYNPTSSGLVERTNGILKTLISKYLLDNHHLPLETAV 1327 Query 179 SLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYK--DQKDKKW 236 S ++ ++N ++L Q + + +P +W YYK + +W Sbjct 1328 SKSLWTINHLNVLPSCQKTRWQLHQAQPLPPVPE--DTLPPHTSPKWYYYKIPGLTNSRW 1385 Query 237 KGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRR 269 GP++ G+ L+ Y IP R ++R Sbjct 1386 SGPVQSLKEAAGAALIP-VGGSYLWIPWRLLKR 1417 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-lymphotropic virus 2] Sequence ID: P03363.4 Length: 1461 Range 1: 1192 to 1448 Score:79.3 bits(194), Expect:1e-16, Method:Composition-based stats., Identities:76/262(29%), Positives:121/262(46%), Gaps:20/262(7%) Query 35 AEEIRRKCPVCRIIGEQ---VGGQLKIG--PG-IWQMDCTHFDGKIILVGIHVE----SG 84 A+ + + C C+ I Q G ++ G P IWQ D TH+ K +HV SG Sbjct 1192 AKSLVQTCHTCQTINSQHHMPRGYIRRGLLPNHIWQGDVTHYKYKKYKYCLHVWVDTFSG 1251 Query 85 YIWAQIISQETADCTVKAVLQLLSA-HNVTELQTDNGPNFKNQKMEGVLNYMGVKHKFGI 143 + +ET+ T+ AVLQ +S + TDNGP F +Q+ + +KH I Sbjct 1252 AVSVSCKKKETSCETISAVLQAISLLGKPLHINTDNGPAFLSQEFQEFCTSYRIKHSTHI 1311 Query 144 PGNPQSQALVENVNHTLKVWIQKFLPETTS--LDNALSLAVHSLNFKRRGRIGGMAPYEL 201 P NP S LVE N +K + K+L + + LDNA+ A+ +LN G +++ Sbjct 1312 PYNPTSSGLVERTNGVIKNLLNKYLLDCPNLPLDNAIHKALWTLNQLNVMNPSGKTRWQI 1371 Query 202 LAQQESLRIQDYFSAIPQKLQAQWIYYK--DQKDKKWKGPMRVEYWGQGSVLLKDEEKGY 259 I + ++ P K +W YYK +++WKGP++ G+ LL + Sbjct 1372 HHSPPLPPIPE--ASTPPKPPPKWFYYKLPGLTNQRWKGPLQSLQEAAGAALLSIDGSPR 1429 Query 260 FLIPRRHIRRVPEPCALPEGDE 281 + IP R +++ C P+ E Sbjct 1430 W-IPWRFLKKA--ACPRPDASE 1448 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 1151 to 1426 Score:78.6 bits(192), Expect:2e-16, Method:Compositional matrix adjust., Identities:75/284(26%), Positives:122/284(42%), Gaps:25/284(8%) Query 14 HEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIG-------PG-IWQM 65 H+ H +P LR A I + C C++I Q G+L G P IWQ Sbjct 1151 HQITHCNPHALRNH-GATASEAHAIVQACHTCKVINPQ--GRLPQGYIRRGHAPNVIWQG 1207 Query 66 DCTHFDGK----IILVGIHVESGYIWAQIISQET-ADCTVKAVLQLLSAHNVTELQTDNG 120 D TH K +LV + SG + +ET +DC V + + + TDNG Sbjct 1208 DVTHLHYKRYKYCLLVWVDTYSGVVSVSCRRKETGSDCVVSLLAAISILGKPHSINTDNG 1267 Query 121 PNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPET--TSLDNAL 178 + +Q+ + + + +KH +P NP S LVE N LK I K+L + L+ A+ Sbjct 1268 TAYLSQEFQQFCSSLSIKHSTHVPYNPTSSGLVERTNGILKTLISKYLLDNHHLPLETAI 1327 Query 179 SLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYK--DQKDKKW 236 S ++ ++N ++L Q I + + +P + +W YYK + +W Sbjct 1328 SKSLWTINHLNVLPSCQKTRWQLHQAQPLPSIPE--NTLPPRASPKWYYYKIPGLTNPRW 1385 Query 237 KGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALPEGD 280 GP++ G+ L+ + IP R ++R C PE + Sbjct 1386 SGPVQSLKEAAGAALIP-VGGSHLWIPWRLLKR--GICPRPESN 1426 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIA14] Sequence ID: P11368.1 Length: 867 Range 1: 595 to 784 Score:77.4 bits(189), Expect:4e-16, Method:Compositional matrix adjust., Identities:62/193(32%), Positives:97/193(50%), Gaps:19/193(9%) Query 11 EINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVC--RIIGEQVGGQLK-IGP-GIWQMD 66 EI FH ++ R+ +L + A +I +C C + VG + I P +WQMD Sbjct 595 EIFITTFHVTAEHYRSRNSLTRKEARDIVTQCQSCCEFLPVPHVGINPRGIRPLQVWQMD 654 Query 67 CTHFD--GKI--ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTEL-QTDNGP 121 TH GK+ + V I SG ++A ++ E A ++ L+ SA L +TDNGP Sbjct 655 VTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGKPRLLKTDNGP 714 Query 122 NFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVW-------IQKFLPETTSL 174 + +QK + M V H G+P NPQ Q +VE + TLK + +++ LP+ Sbjct 715 AYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKTYLIKQKRELEEILPQH--- 771 Query 175 DNALSLAVHSLNF 187 +LS+A+ +LNF Sbjct 772 QESLSMALFTLNF 784 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P03365.3 Length: 1755 Range 1: 1438 to 1702 Score:75.9 bits(185), Expect:2e-15, Method:Compositional matrix adjust., Identities:79/283(28%), Positives:125/283(44%), Gaps:35/283(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG----- 61 +E A+ +H H + LR +F++ + A EI + CP C G QL + P Sbjct 1438 LESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGH--APQLGVNPRGLKPR 1495 Query 62 -IWQMDCTHFD--GKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV-----T 113 +WQMD TH GK+ V + V++ Y + T + T K VLQ L+ Sbjct 1496 VLWQMDVTHVSEFGKLKYVHVTVDT-YSHFTFATARTGEAT-KDVLQHLAQSFAYMGIPQ 1553 Query 114 ELQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKF--LPET 171 +++TDN P + ++ ++ L + H GIP NPQ QA+VE + +K + K + Sbjct 1554 KIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKY 1613 Query 172 TSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQ 231 + + L+ A+ LN G A + R SA P+ + + +KD Sbjct 1614 YTPHHLLAHALFVLNHVNMDNQGHTA---------AERHWGPISADPKPM----VMWKDL 1660 Query 232 KDKKWKGPMRVEYWGQG--SVLLKDEEKGYFLIPRRHIRRVPE 272 WKGP + G+G V +D E + +P R IR E Sbjct 1661 LTGSWKGPDVLITAGRGYACVFPQDAETPIW-VPDRFIRPFTE 1702 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11283.2 Length: 1755 Range 1: 1438 to 1702 Score:75.5 bits(184), Expect:2e-15, Method:Compositional matrix adjust., Identities:79/283(28%), Positives:125/283(44%), Gaps:35/283(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG----- 61 +E A+ +H H + LR +F++ + A EI + CP C G QL + P Sbjct 1438 LESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGH--APQLGVNPRGLKPR 1495 Query 62 -IWQMDCTHFD--GKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV-----T 113 +WQMD TH GK+ V + V++ Y + T + T K VLQ L+ Sbjct 1496 VLWQMDVTHVSEFGKLKYVHVTVDT-YSHFTFATARTGEAT-KDVLQHLAQSFAYMGFPQ 1553 Query 114 ELQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKF--LPET 171 +++TDN P + ++ ++ L + H GIP NPQ QA+VE + +K + K + Sbjct 1554 KIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKY 1613 Query 172 TSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQ 231 + + L+ A+ LN G A + R SA P+ + + +KD Sbjct 1614 YTPHHLLAHALFVLNHVNMDNQGHTA---------AERHWGPISADPKPM----VMWKDL 1660 Query 232 KDKKWKGPMRVEYWGQG--SVLLKDEEKGYFLIPRRHIRRVPE 272 WKGP + G+G V +D E + +P R IR E Sbjct 1661 LAGSWKGPDVLITAGRGYACVFPQDAETPIW-VPDRFIRPFTE 1702 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus - RSA] Sequence ID: Q04095.2 Length: 1603 Range 1: 1282 to 1482 Score:61.2 bits(147), Expect:1e-10, Method:Compositional matrix adjust., Identities:59/206(29%), Positives:88/206(42%), Gaps:26/206(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG---IW 63 + EA+ H H P+ L N+ A E+ + CP C G G G IW Sbjct 1282 LREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIW 1341 Query 64 QMDCTHFDGKI-----ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV----TE 114 Q D T + ++ + V + S I +++Q +V A +A V Sbjct 1342 QTDFT-LEPRMAPRSWLAVTVDTASSAI---VVTQHGRVTSVAAQHHWATAIAVLGRPKA 1397 Query 115 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQ--------- 165 ++TDNG F ++ L G+ H GIPGN Q QA+VE N LK I+ Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 1457 Query 166 KFLPETTSLDNALSLAVHSLNFKRRG 191 K +P T+ L+ A+++LN RG Sbjct 1458 KRIP-TSKQGELLAKAMYALNHFERG 1482 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus] Sequence ID: Q7SQ98.2 Length: 1603 Range 1: 1282 to 1482 Score:61.2 bits(147), Expect:1e-10, Method:Compositional matrix adjust., Identities:59/206(29%), Positives:88/206(42%), Gaps:26/206(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG---IW 63 + EA+ H H P+ L N+ A E+ + CP C G G G IW Sbjct 1282 LREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIW 1341 Query 64 QMDCTHFDGKI-----ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV----TE 114 Q D T + ++ + V + S I +++Q +V A +A V Sbjct 1342 QTDFT-LEPRMAPRSWLAVTVDTASSAI---VVTQHGRVTSVAAQHHWATAIAVLGRPKA 1397 Query 115 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQ--------- 165 ++TDNG F ++ L G+ H GIPGN Q QA+VE N LK I+ Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 1457 Query 166 KFLPETTSLDNALSLAVHSLNFKRRG 191 K +P T+ L+ A+++LN RG Sbjct 1458 KRIP-TSKQGELLAKAMYALNHFERG 1482 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Schmidt-Ruppin B] Sequence ID: O92956.2 Length: 1603 Range 1: 1282 to 1482 Score:59.7 bits(143), Expect:4e-10, Method:Compositional matrix adjust., Identities:58/206(28%), Positives:87/206(42%), Gaps:26/206(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG---IW 63 + EA+ H H P+ L N+ A E+ + CP C G G G IW Sbjct 1282 LREAKDLHTTLHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIW 1341 Query 64 QMDCTHFDGKI-----ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV----TE 114 Q D T + ++ + V + S I +++Q +V A +A V Sbjct 1342 QTDFT-LEPRMAPRSWLAVTVDTASSAI---VVTQHGRVTSVAAQHHWATAIAVLGRPKA 1397 Query 115 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQ--------- 165 ++TDNG F ++ L G+ H GIPGN Q QA+VE N LK I+ Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 1457 Query 166 KFLPETTSLDNALSLAVHSLNFKRRG 191 K +P + L+ A+++LN RG Sbjct 1458 KRIPASKQ-GELLAKAMYALNHFERG 1482 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Prague C] Sequence ID: P03354.2 Length: 1603 Range 1: 1282 to 1482 Score:59.7 bits(143), Expect:4e-10, Method:Compositional matrix adjust., Identities:58/206(28%), Positives:87/206(42%), Gaps:26/206(12%) Query 7 IEEAEINHEKFHSDPQYLRTEFNLPKMVAEEIRRKCPVCRIIGEQVGGQLKIGPG---IW 63 + EA+ H H P+ L N+ A E+ + CP C G G G IW Sbjct 1282 LREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIW 1341 Query 64 QMDCTHFDGKI-----ILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNV----TE 114 Q D T + ++ + V + S I +++Q +V +A V Sbjct 1342 QTDFT-LEPRMAPRSWLAVTVDTASSAI---VVTQHGRVTSVAVQHHWATAIAVLGRPKA 1397 Query 115 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQ--------- 165 ++TDNG F ++ L G+ H GIPGN Q QA+VE N LK I+ Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFM 1457 Query 166 KFLPETTSLDNALSLAVHSLNFKRRG 191 K +P T+ L+ A+++LN RG Sbjct 1458 KRIP-TSKQGELLAKAMYALNHFERG 1482