Пакет EMBOSS
Программы парного выравнивания| A | C | R | K | L | I | T | Y | A | F | E | E | - | - | L | E | L | N | R | V | A | I | C | A |
| P | V | A | - | C | I | D | Y | A | F | E | S | D | G | L | E | L | T | R | L | E | I | C | - |
| -1 | -1 | -1 | -12 | -1 | 4 | -1 | 7 | 4 | 6 | 5 | 0 | -12 | -2 | 4 | 5 | 4 | 0 | 5 | 1 | -1 | 4 | 9 | -12 |
#=======================================
#
# Aligned_sequences: 2
# 1: seq1
# 2: seq2
# Matrix: EBLOSUM62
# Gap_penalty: 12
# Extend_penalty: 2
#
# Length: 24
# Identity: 11/24 (45.8%)
# Similarity: 12/24 (50.0%)
# Gaps: 4/24 (16.7%)
# Score: 14
#
#
#=======================================
10 20
seq1 ACRKLITYAFEE--LELNRVAICA
: :::: ::: :. ::
seq2 PVA-CIDYAFESDGLELTRLEIC-
10 20
#---------------------------------------
needle sw:p96579 sw:p15808 ndlalignment.needle -auto
#=======================================
#
# Aligned_sequences: 2
# 1: YDAF_BACSU
# 2: THY1_DICDI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 355
# Identity: 47/355 (13.2%)
# Similarity: 70/355 (19.7%)
# Gaps: 224/355 (63.1%)
# Score: 58.0
#
#
#=======================================
YDAF_BACSU 0 -------------------------------------------------- 0
THY1_DICDI 1 MGLDIQTEIDKIVIEKVKPEVEYYDVMGGSHRWEVKVHDHGKVALVDTMP 50
YDAF_BACSU 0 -------------------------------------------------- 0
THY1_DICDI 51 RLAPVGQTADFSICQAARVSYGAGTKKVTEDKGLIRYLYRHQHTSPFEMV 100
YDAF_BACSU 1 ------------------MFTCKVNE-------------HITI------- 12
..|..||| |.:|
THY1_DICDI 101 EFKFHCVMPVFIARQWIRHRTANVNEYSARYSVLPDKFYHPSIEEVRKQS 150
YDAF_BACSU 13 --------RLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETI 54
..||||.|:...:.:.:.:: :..||.|.
THY1_DICDI 151 TSNRQGGEEALEPKTAQEFLDYLDKVEE-------------NYKTYNEL- 186
YDAF_BACSU 55 IPDWRRQYADLNGIEAGLLYDGSLCGM-----------ISLHNL------ 87
:|.||..:....|: |.||||
THY1_DICDI 187 -------------LEKGLSRELGRIGLPVSIYTEWYWKIDLHNLFHFLRL 223
YDAF_BACSU 88 --DQVNRKAEIGYWIAKEFEG------KGIITAACRKLITYAFEELELNR 129
|..::| || :::.. :.|:..||...|.||||.|:|.|
THY1_DICDI 224 RMDSHSQK-EI-----RDYANTIFALIRPIVPVACEAFIDYAFESLKLTR 267
YDAF_BACSU 130 VAICA-AVGNEKSRAVPERIGFLEEGKARDGLYVNGMHHDLVYYSLLKRE 178
:.|.| ..|:..:......|...||.|.. |:.|...
THY1_DICDI 268 LEIEAIRTGSPLNTTNKREIEEFEEKKKL--LFPNTQA------------ 303
YDAF_BACSU 179 WEGEK 183
THY1_DICDI 303 ----- 303
#---------------------------------------
#---------------------------------------
water sw:96579 sw:p15808 wtralignment.water -auto
#=======================================
#
# Aligned_sequences: 2
# 1: YDAF_BACSU
# 2: THY1_DICDI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 167
# Identity: 39/167 (23.4%)
# Similarity: 60/167 (35.9%)
# Gaps: 59/167 (35.3%)
# Score: 73.5
#
#
#=======================================
YDAF_BACSU 15 LEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYAD 64
||||.|:...:.:.:.:: :..||.|.
THY1_DICDI 161 LEPKTAQEFLDYLDKVEE-------------NYKTYNEL----------- 186
YDAF_BACSU 65 LNGIEAGLLYDGSLCGM-----------ISLHNL--------DQVNRKAE 95
:|.||..:....|: |.|||| |..::| |
THY1_DICDI 187 ---LEKGLSRELGRIGLPVSIYTEWYWKIDLHNLFHFLRLRMDSHSQK-E 232
YDAF_BACSU 96 IGYWIAKEFEG------KGIITAACRKLITYAFEELELNRVAICA-AVGN 138
| :::.. :.|:..||...|.||||.|:|.|:.|.| ..|:
THY1_DICDI 233 I-----RDYANTIFALIRPIVPVACEAFIDYAFESLKLTRLEIEAIRTGS 277
YDAF_BACSU 139 EKSRAVPERIGFLEEGK 155
..:......|...||.|
THY1_DICDI 278 PLNTTNKREIEEFEEKK 294
#---------------------------------------
В частное выравнивание вошли участки 15-155 и 161-294