Пакет EMBOSS
Программы парного выравниванияA | C | R | K | L | I | T | Y | A | F | E | E | - | - | L | E | L | N | R | V | A | I | C | A |
P | V | A | - | C | I | D | Y | A | F | E | S | D | G | L | E | L | T | R | L | E | I | C | - |
-1 | -1 | -1 | -12 | -1 | 4 | -1 | 7 | 4 | 6 | 5 | 0 | -12 | -2 | 4 | 5 | 4 | 0 | 5 | 1 | -1 | 4 | 9 | -12 |
#======================================= # # Aligned_sequences: 2 # 1: seq1 # 2: seq2 # Matrix: EBLOSUM62 # Gap_penalty: 12 # Extend_penalty: 2 # # Length: 24 # Identity: 11/24 (45.8%) # Similarity: 12/24 (50.0%) # Gaps: 4/24 (16.7%) # Score: 14 # # #======================================= 10 20 seq1 ACRKLITYAFEE--LELNRVAICA : :::: ::: :. :: seq2 PVA-CIDYAFESDGLELTRLEIC- 10 20 #---------------------------------------
needle sw:p96579 sw:p15808 ndlalignment.needle -auto
#======================================= # # Aligned_sequences: 2 # 1: YDAF_BACSU # 2: THY1_DICDI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 355 # Identity: 47/355 (13.2%) # Similarity: 70/355 (19.7%) # Gaps: 224/355 (63.1%) # Score: 58.0 # # #======================================= YDAF_BACSU 0 -------------------------------------------------- 0 THY1_DICDI 1 MGLDIQTEIDKIVIEKVKPEVEYYDVMGGSHRWEVKVHDHGKVALVDTMP 50 YDAF_BACSU 0 -------------------------------------------------- 0 THY1_DICDI 51 RLAPVGQTADFSICQAARVSYGAGTKKVTEDKGLIRYLYRHQHTSPFEMV 100 YDAF_BACSU 1 ------------------MFTCKVNE-------------HITI------- 12 ..|..||| |.:| THY1_DICDI 101 EFKFHCVMPVFIARQWIRHRTANVNEYSARYSVLPDKFYHPSIEEVRKQS 150 YDAF_BACSU 13 --------RLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETI 54 ..||||.|:...:.:.:.:: :..||.|. THY1_DICDI 151 TSNRQGGEEALEPKTAQEFLDYLDKVEE-------------NYKTYNEL- 186 YDAF_BACSU 55 IPDWRRQYADLNGIEAGLLYDGSLCGM-----------ISLHNL------ 87 :|.||..:....|: |.|||| THY1_DICDI 187 -------------LEKGLSRELGRIGLPVSIYTEWYWKIDLHNLFHFLRL 223 YDAF_BACSU 88 --DQVNRKAEIGYWIAKEFEG------KGIITAACRKLITYAFEELELNR 129 |..::| || :::.. :.|:..||...|.||||.|:|.| THY1_DICDI 224 RMDSHSQK-EI-----RDYANTIFALIRPIVPVACEAFIDYAFESLKLTR 267 YDAF_BACSU 130 VAICA-AVGNEKSRAVPERIGFLEEGKARDGLYVNGMHHDLVYYSLLKRE 178 :.|.| ..|:..:......|...||.|.. |:.|... THY1_DICDI 268 LEIEAIRTGSPLNTTNKREIEEFEEKKKL--LFPNTQA------------ 303 YDAF_BACSU 179 WEGEK 183 THY1_DICDI 303 ----- 303 #--------------------------------------- #---------------------------------------
water sw:96579 sw:p15808 wtralignment.water -auto
#======================================= # # Aligned_sequences: 2 # 1: YDAF_BACSU # 2: THY1_DICDI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 167 # Identity: 39/167 (23.4%) # Similarity: 60/167 (35.9%) # Gaps: 59/167 (35.3%) # Score: 73.5 # # #======================================= YDAF_BACSU 15 LEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYAD 64 ||||.|:...:.:.:.:: :..||.|. THY1_DICDI 161 LEPKTAQEFLDYLDKVEE-------------NYKTYNEL----------- 186 YDAF_BACSU 65 LNGIEAGLLYDGSLCGM-----------ISLHNL--------DQVNRKAE 95 :|.||..:....|: |.|||| |..::| | THY1_DICDI 187 ---LEKGLSRELGRIGLPVSIYTEWYWKIDLHNLFHFLRLRMDSHSQK-E 232 YDAF_BACSU 96 IGYWIAKEFEG------KGIITAACRKLITYAFEELELNRVAICA-AVGN 138 | :::.. :.|:..||...|.||||.|:|.|:.|.| ..|: THY1_DICDI 233 I-----RDYANTIFALIRPIVPVACEAFIDYAFESLKLTRLEIEAIRTGS 277 YDAF_BACSU 139 EKSRAVPERIGFLEEGK 155 ..:......|...||.| THY1_DICDI 278 PLNTTNKREIEEFEEKK 294 #---------------------------------------В частное выравнивание вошли участки 15-155 и 161-294