******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= temp.fasta ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ PDUO_BACSU 1.0000 193 PDUO_CITFR 1.0000 176 PDUO_MYCBO 1.0000 193 PDUO_MYCTU 1.0000 193 PDUO_MYCLE 1.0000 191 MMAB_BOVIN 1.0000 241 MMAB_MOUSE 1.0000 237 MMAB_HUMAN 1.0000 250 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme temp.fasta -mod zoops -nmotifs 10 -prior dirichlet -nostatus -protein -text model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 8 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 1674 N= 8 sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.101 C 0.016 D 0.065 E 0.058 F 0.034 G 0.078 H 0.019 I 0.042 K 0.045 L 0.111 M 0.017 N 0.024 P 0.048 Q 0.036 R 0.081 S 0.069 T 0.065 V 0.057 W 0.008 Y 0.026 Background letter frequencies (from dataset with add-one prior applied): A 0.100 C 0.016 D 0.064 E 0.058 F 0.034 G 0.078 H 0.019 I 0.043 K 0.045 L 0.110 M 0.017 N 0.024 P 0.048 Q 0.036 R 0.080 S 0.069 T 0.065 V 0.057 W 0.009 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 50 sites = 8 llr = 865 E-value = 7.7e-137 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::1::::::4::5:1:3::4::::::::1154:::6:4:1::9:::4:6 pos.-specific C ::::::::4::::::::::::::::::::1::::::4:::4::::::::: probability D 1:4::::::a:::::::::::::::::::::::::::::::::::::::: matrix E :::4:a1:::::::1::1::1:::::::::::::::::::::::a::::: F :::1:::::::::::::::::a:::::::::::::4:::::::::::::: G ::::::3:::::::3:1::::::::694:::::::::::::::::::::: H 1:::::::::::::::::::::::::::::::::a::::::::::::::: I :8::::::6:::::::::::::51:::::1:::::1:::1::::::1:1: K ::::::::::4::::::::61:::::1:5::::::::::::::::::::: L ::4:a::1:::::::8::a::::9::::14::5a:::::1:::1:::1:: M ::::::::::::1::::::::::::::::::::::::::::::::::::: N :::::::::::14::::::1:::::::1:::::::::::::::::::::: P 4:::::::::::::1:95::::::a:::4::::::::::::::::::::4 Q ::1:::4:::::::5:::::::::::::::::1::::::::::::::::: R :::4::11::1::1:::::::::::::::::::::::a:::aa::a5::: S 1:1:::::::::33:1::::4::::4:5:395::::::::::::::4::: T ::::::1:::1:31:::1:3::::::::::::::::::6:3::::::::: V :3::::::::::::::::::::5::::::::::::5:::83::::::55: W :::::::8::::::::::::::::::::::::::::::::::::::::4: Y 3::::::::::9:::::::::::::::::::::::::::::::::::::: bits 6.8 6.1 5.5 * 4.8 * * * * Relative 4.1 * *** * * * * * * Entropy 3.4 * ** *** * * ** ** * * * ** ** ** ** * (156.0 bits) 2.7 ** ** *** ** * * ** ******** ** ************** ** 2.0 ************************************************** 1.4 ************************************************** 0.7 ************************************************** 0.0 -------------------------------------------------- Multilevel PIDELEQWIDAYNAQLPPLKAFILPGGSKLSALLHVARTVCRRAERRVVA consensus YVLR G C K SSG A TS V S GPS SA FC A T SAWP sequence T V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- MMAB_HUMAN 149 2.67e-53 HLKYTTFKAG PILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCRAVCRRAERRVVP LVQMGETDAN MMAB_BOVIN 143 8.21e-53 HLKHATFEAG PILELEQWIDKYSRQLPPLTAFILPSGGKSSSALHFCRAVCRRAERRVVP LVQTGETDAN MMAB_MOUSE 143 4.76e-52 HLKHTAFQEG PVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVP LVQMGETDAN PDUO_MYCTU 96 9.27e-52 KHPPLRIAQS YIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWA AVDAHPEGVS PDUO_MYCBO 96 9.27e-52 KHPPLRIAQS YIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWA AVDAHPEGVS PDUO_MYCLE 99 5.55e-49 EYPQLRITQT HIDRLEEWCDTYNTPLPTLNSFVLPGGSPLSALLHVARTVARRAERSAWA AVEAHPGVVS PDUO_BACSU 89 1.18e-44 ERKDYKLTEE SVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVA LMKSEEIHET PDUO_CITFR 90 6.86e-42 TRLKQRIGEE DIQALEQLIDRNMAQSGPLKEFVIPGKNLASAQLHVARTLTRRLERILIA MGRTLTLRDE -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_HUMAN 2.7e-53 148_[1]_52 MMAB_BOVIN 8.2e-53 142_[1]_49 MMAB_MOUSE 4.8e-52 142_[1]_45 PDUO_MYCTU 9.3e-52 95_[1]_48 PDUO_MYCBO 9.3e-52 95_[1]_48 PDUO_MYCLE 5.6e-49 98_[1]_43 PDUO_BACSU 1.2e-44 88_[1]_55 PDUO_CITFR 6.9e-42 89_[1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=50 seqs=8 MMAB_HUMAN ( 149) PILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCRAVCRRAERRVVP 1 MMAB_BOVIN ( 143) PILELEQWIDKYSRQLPPLTAFILPSGGKSSSALHFCRAVCRRAERRVVP 1 MMAB_MOUSE ( 143) PVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVP 1 PDUO_MYCTU ( 96) YIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWA 1 PDUO_MYCBO ( 96) YIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWA 1 PDUO_MYCLE ( 99) HIDRLEEWCDTYNTPLPTLNSFVLPGGSPLSALLHVARTVARRAERSAWA 1 PDUO_BACSU ( 89) SVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVA 1 PDUO_CITFR ( 90) DIQALEQLIDRNMAQSGPLKEFVIPGKNLASAQLHVARTLTRRLERILIA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 50 n= 1282 bayes= 7.31515 E= 7.7e-137 -965 -965 96 -965 -965 -965 272 -965 -965 -965 -965 -965 295 -965 -965 86 -965 -965 -965 323 -965 -965 -965 -965 -965 -965 -965 414 -965 -965 -965 -965 -965 -965 -965 -965 -965 212 -965 -965 -965 -965 254 -965 -965 -965 -965 -965 -965 176 -965 -965 -965 179 -965 86 -965 -965 -965 -965 32 -965 -965 269 187 -965 -965 -965 -965 -965 -965 -965 -965 -965 222 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 318 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 411 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 111 -965 168 -965 -965 -965 -965 -965 -965 -965 338 64 -965 94 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 18 -965 -965 -965 -965 64 -965 -965 -965 640 -965 -965 455 -965 -965 -965 -965 -965 388 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 396 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 190 -965 -965 -965 -965 -965 -965 -965 306 -965 -965 -965 -965 -965 64 -965 94 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 237 -965 -965 -965 -965 -965 -965 -965 504 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 287 395 -965 -965 -965 185 194 -965 -965 -965 232 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 64 185 94 -965 -965 -965 -965 -965 -965 111 -965 168 -965 -965 -965 -965 -965 -965 137 379 -965 -965 -965 -965 -965 -965 32 -965 -965 -965 -965 -965 -965 -965 -965 276 -965 -965 -965 -965 -965 86 -965 -965 -965 -965 -965 -965 -965 -965 -965 68 -965 -965 -965 -965 -965 -965 417 -965 -965 -965 -965 -965 -965 -965 132 -965 -965 111 -965 -965 -965 -965 -965 -965 -965 -965 337 -965 -965 -965 94 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 318 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 380 -965 -965 237 -965 -965 -965 -965 194 -965 -965 -965 190 -965 -965 111 -965 -965 -965 -965 148 -965 -965 -965 -965 -965 -965 244 -965 -965 -965 -965 -965 -965 -965 -965 487 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 355 -965 -965 -965 -965 -965 -965 -965 -965 -965 312 -965 -965 -965 -965 -965 -965 -965 -965 -965 156 -965 299 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 437 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 300 -965 -965 -965 -965 -965 -965 -965 -965 -965 244 -965 -965 -965 -965 -965 -965 -965 -965 -965 349 -965 -965 148 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 227 -965 -965 -965 -965 -965 237 -965 -965 -965 285 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 348 18 -965 -965 295 -965 -965 -965 -965 -965 -965 -965 32 297 -965 -965 -965 -965 -965 156 -965 176 -965 -965 -965 -965 -965 185 -965 -965 -965 -965 32 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 366 -965 -965 -965 -965 232 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 285 -965 -965 -965 -965 190 -965 -965 -965 -965 -965 -965 -965 -965 218 -965 -965 -965 179 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 318 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 572 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 345 -965 -965 156 -965 -965 -965 -965 -965 -965 -965 -965 -965 312 -965 -965 264 455 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 364 -965 -965 -965 -965 -965 190 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 327 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 156 -965 18 -965 -965 -965 -965 -965 -965 -965 371 -965 -965 32 455 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 194 212 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 364 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 364 -965 -965 -965 -965 -965 312 -965 -965 -965 -965 -965 -965 -965 -965 18 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 411 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 364 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 156 -965 -965 -965 -965 -965 -965 264 244 -965 -965 -965 -965 190 -965 -965 -965 -965 -965 -965 -965 -965 18 -965 -965 -965 -965 -965 -965 -965 312 -965 -965 -965 -965 -965 -965 -965 -965 -965 156 -965 -965 -965 -965 -965 -965 -965 -965 -965 312 540 -965 264 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 -965 295 -965 -965 -965 -965 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 50 nsites= 8 E= 7.7e-137 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.125000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.375000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.125000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.375000 0.000000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.250000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.125000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.125000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.375000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [PY][IV][DL][ER]LE[QG]W[IC]D[AK]Y[NST][AS][QG]LP[PA]L[KT][AS]F[IV]LP[GS]G[SG][KP][LS]S[AS][LA]LH[VF][AC]R[TA]V[CTV]RRAER[RS][VA][VW][AP] -------------------------------------------------------------------------------- Time 0.68 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 50 sites = 7 llr = 767 E-value = 2.8e-106 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::::::::::::1:::::::4:::3:::a:4::::3:39::39:6::1: pos.-specific C :::::::::::::::::::::::::::::::::4:::::::::1:::::: probability D ::::::::a3::::::4::::1:6a:::::::4:a::::::::::::::: matrix E ::::::::::::::::::4:::::::::6::::::a:::::::::4:::4 F :::::::::::4:::6:1:::::::::4::::::::::::::4::::::: G :::::::a::a::4::16:::::::::::::6:::::::::a:::::4:: H ::::::::::::::::::::::::::::::::::::::::::::::::3: I ::a:::::::::::::::::1::::1:::::::::::1::9::::::1:: K :4:::4:::4::::::::::::a::::::::::::::::::::::::::: L ::::::::::::::6::::::::::1:4::::::::6:::1:::6:9::: M :::::::::::::::::3::::::::::::::::::::::::::3::::: N :::::::::3:::::::::::::::::::::::::::4::::::::::1: P 4::::::::::::::::::::3:::::::::::::::::::::::::::4 Q :::::::::::::::::::::::::4:::::::::::::1:::::::::1 R :6:::6:::::::::::::a4:::::6:::::::::::::::::::::1: S ::::::::::::44:4::6::1:::::::::::::::47:::::::1::: T 4:::a:a::::66:4:4::::::4::::::::64::1::::::::::13: V ::::::::::::::::::::4:::::414:4::1::::::::3::::3:: W :::::::::::::::::::::::::::::::::::::::::::::::::: Y 1::a::::::::::::::::::::::::::6:::::::::::::1::::: bits 6.8 6.1 5.5 * 4.8 ** * Relative 4.1 *** * * * * * ** * Entropy 3.4 *** *** ** * * * * * *** *** * ** * (158.0 bits) 2.7 ************* ******* *** ********** ********** * 2.0 ************************************************** 1.4 ************************************************** 0.7 ************************************************** 0.0 -------------------------------------------------- Multilevel PRIYTRTGDKGTTGLFDGSRRAKDDQRFEAYGTCDELNSAIGFALALGHE consensus TK K D FSSTSTME VP T AVLV VADT ASA A ME VTP sequence N V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- MMAB_MOUSE 50 1.06e-52 LQPSSTAAKI PKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTE KGHMFAEELQ MMAB_HUMAN 56 8.28e-52 PQPSSKTPRI PKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTE KGHTFAEELQ MMAB_BOVIN 50 8.19e-51 PQPSSKTPKV PKIYTKTGDKGFSSTFTGERRSKDDQVFEAVGTTDELSSAIGFAMELIAE KGHPFVEELQ PDUO_MYCTU 6 3.58e-49 MAVHL TRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP DTQITDVLRQ PDUO_MYCBO 6 3.58e-49 MAVHL TRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP DTQITDVLRQ PDUO_MYCLE 6 7.52e-49 MAIHL TRIYTRTGDNGTTGLSDFSRVAKTDLRLVAYADCDETNSAIGVALALGNP DQKITDVLQQ PDUO_CITFR 2 3.84e-45 M YRIYTRTGDNGTTALFGGSRIDKDDIRVEAYGTVDELISQLGVCYASTRQ AELRQELHAM -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_MOUSE 1.1e-52 49_[2]_138 MMAB_HUMAN 8.3e-52 55_[2]_145 MMAB_BOVIN 8.2e-51 49_[2]_142 PDUO_MYCTU 3.6e-49 5_[2]_138 PDUO_MYCBO 3.6e-49 5_[2]_138 PDUO_MYCLE 7.5e-49 5_[2]_136 PDUO_CITFR 3.8e-45 1_[2]_125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=50 seqs=7 MMAB_MOUSE ( 50) PKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTE 1 MMAB_HUMAN ( 56) PKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTE 1 MMAB_BOVIN ( 50) PKIYTKTGDKGFSSTFTGERRSKDDQVFEAVGTTDELSSAIGFAMELIAE 1 PDUO_MYCTU ( 6) TRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP 1 PDUO_MYCBO ( 6) TRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP 1 PDUO_MYCLE ( 6) TRIYTRTGDNGTTGLSDFSRVAKTDLRLVAYADCDETNSAIGVALALGNP 1 PDUO_CITFR ( 2) YRIYTRTGDNGTTALFGGSRIDKDDIRVEAYGTVDELISQLGVCYASTRQ 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 50 n= 1282 bayes= 8.11736 E= 2.8e-106 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 314 -945 -945 -945 272 -945 -945 243 -945 -945 -945 -945 -945 -945 -945 -945 325 -945 -945 -945 -945 -945 283 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 455 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 523 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 394 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 325 -945 -945 -945 -945 -945 283 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 394 -945 -945 -945 -945 -945 -945 -945 -945 368 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 396 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 215 -945 -945 -945 -945 -945 325 -945 -945 356 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 368 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 314 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 314 -945 -945 -945 51 -945 -945 -945 -945 246 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 237 -945 -945 -945 -945 -945 -945 272 -945 -945 -945 -945 -945 -945 -945 406 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 -945 -945 273 -945 -945 87 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 272 -945 -945 -945 -945 -945 -945 -945 206 287 -945 -945 -945 -945 406 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 289 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 305 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 175 -945 -945 -945 -945 -945 -945 241 -945 -945 290 -945 -945 209 -945 115 -945 -945 -945 -945 -945 -945 -945 -945 -945 256 -945 -945 105 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 448 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 315 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 272 -945 -945 -945 -945 -945 396 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 151 -945 -945 -945 -945 -945 -945 175 -945 37 -945 -945 -945 357 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 283 -945 -945 290 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 196 -945 -945 -945 -945 -945 -945 -945 132 -945 -945 -945 -945 -945 330 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 290 -945 -945 331 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 290 -945 443 209 -945 -945 -945 -945 287 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 273 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 314 -945 -945 -945 -945 475 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 272 132 -945 -945 -945 -945 396 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 411 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 151 -945 -945 -945 -945 -945 -945 -945 -945 237 -945 -945 -945 -945 -945 -945 114 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 175 -945 -945 -945 414 -945 -945 -945 263 -945 -945 -945 -945 151 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 337 -945 -945 -945 -945 309 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 199 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 433 -945 37 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 368 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 151 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 232 -945 -945 309 316 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 237 406 -945 -945 -945 -945 -945 -945 -945 -945 243 251 -945 -945 289 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 296 -945 -945 -945 -945 -945 105 -945 -945 -945 -945 -945 -945 -945 -945 -945 246 -945 175 -945 -945 -945 -945 -945 -945 -945 -945 114 232 -945 -945 51 -945 -945 -945 -945 -945 392 -945 -945 -945 -945 256 -945 -945 83 -945 214 -945 -945 -945 -945 -945 -945 289 -945 -945 -945 -945 -945 -945 -945 -945 314 199 -945 -945 -945 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 50 nsites= 7 E= 2.8e-106 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.571429 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.428571 0.000000 0.000000 0.428571 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.142857 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.571429 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.285714 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.142857 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [PT][RK]IYT[RK]TGD[KDN]G[TF][TS][GS][LT][FS][DT][GM][SE]R[RV][AP]K[DT]D[QA][RV][FL][EV]A[YV][GA][TD][CT]DE[LA][NS][SA]AIG[FAV]A[LM][AE]L[GV][HT][EP] -------------------------------------------------------------------------------- Time 1.08 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 41 sites = 7 llr = 610 E-value = 2.5e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :4::::::4::7:::::::::::116::741:::::::::: pos.-specific C ::::::::::::::::::::::::::::::::::::::::: probability D 3::::::4:::::::::::a:::::::::::3:4::1:::: matrix E 1:::46::1:::::::::::::::::::::::4:::4:1:1 F :::::::::::::4:::::::1a:::::::::::::::::: G ::::63:::::::::::::::::::::::::136:1:::44 H ::4::::1::::::::::::::::::::::::::::::::: I ::::::1::::::::::::::::4::::::::::1:::4:: K ::1:::::::::9::::::::::::::::::4:::::4::3 L 6::::::::4:1::a::a::49::7::::::::::4::::: M :1:3::::1:::::::::::::::::::::4:::::::::1 N :::::::::4:::::a:::::::::::::6::1:3:::::: P :::4::::::4:::::::::::::::::::3::::1::4:: Q ::4::::::::::::::::::::::::::::::::3::::: R ::::::::::::1:::a:::::::::a::::1:::::4::: S :::1:::4::::::::::a::::::4::::::1:1:::::: T :::1::4::1:::::::::::::4::::1:1:::::::::: V :4:::14:3:61::::::::::::1::61:::::4::1::: W ::::::::::::::::::::::::::::::::::::4:::: Y :::::::::::::6::::::6::::::4:::::::::::6: bits 6.8 6.1 5.5 * 4.8 * * Relative 4.1 ** * ** * * Entropy 3.4 * * ********* * ** * * * (125.7 bits) 2.7 ******* ** ************ *** ** ** ***** 2.0 ***************************************** 1.4 ***************************************** 0.7 ***************************************** 0.0 ----------------------------------------- Multilevel LAHPGETDALVAKYLNRLSDYLFILARVANMKEGVLEKIYG consensus DVQMEGVSVNP F L T S Y APDGDNQWRPGK sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- MMAB_HUMAN 199 3.96e-45 CRRAERRVVP LVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYM KNDPSAESEG MMAB_MOUSE 193 8.79e-43 CRRAERRVVP LVQMGETDANVAKFLNRLSDYLFTVARYAAMKEGSQEKIYK KHDV MMAB_BOVIN 193 4.76e-41 CRRAERRVVP LVQTGETDANVVKFLNRLSDYLFTLARYTAMKEGNPEKIYK KNDLSDRT PDUO_MYCTU 148 4.84e-40 RAERSAWAAV DAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGG DRTAS PDUO_MYCBO 148 4.84e-40 RAERSAWAAV DAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGG DRTAS PDUO_MYCLE 151 3.25e-39 RAERSAWAAV EAHPGVVSMLPAKYLNRLSDLLFILSRVANTGNDVLWRPGG PDUO_BACSU 139 9.01e-34 TRRAERRVVA LMKSEEIHETVLRYLNRLSDYFFAAARVVNARSGIGDVEYE RSAIVFRDRN -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_HUMAN 4e-45 198_[3]_11 MMAB_MOUSE 8.8e-43 192_[3]_4 MMAB_BOVIN 4.8e-41 192_[3]_8 PDUO_MYCTU 4.8e-40 147_[3]_5 PDUO_MYCBO 4.8e-40 147_[3]_5 PDUO_MYCLE 3.2e-39 150_[3] PDUO_BACSU 9e-34 138_[3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=41 seqs=7 MMAB_HUMAN ( 199) LVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYM 1 MMAB_MOUSE ( 193) LVQMGETDANVAKFLNRLSDYLFTVARYAAMKEGSQEKIYK 1 MMAB_BOVIN ( 193) LVQTGETDANVVKFLNRLSDYLFTLARYTAMKEGNPEKIYK 1 PDUO_MYCTU ( 148) DAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGG 1 PDUO_MYCBO ( 148) DAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGG 1 PDUO_MYCLE ( 151) EAHPGVVSMLPAKYLNRLSDLLFILSRVANTGNDVLWRPGG 1 PDUO_BACSU ( 139) LMKSEEIHETVLRYLNRLSDYFFAAARVVNARSGIGDVEYE 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 41 n= 1354 bayes= 7.4312 E= 2.5e-075 -945 -945 215 130 -945 -945 -945 -945 -945 237 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 209 -945 -945 -945 -945 -945 -945 -945 -945 -945 306 -945 -945 -945 -945 -945 -945 290 -945 -945 -945 -945 -945 -945 -945 -945 450 -945 167 -945 -945 -945 -945 357 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 406 -945 314 -945 -945 105 114 -945 -945 -945 -945 -945 -945 289 -945 287 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 330 -945 187 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 132 -945 -945 -945 -945 -945 -945 -945 -945 -945 175 -945 -945 -945 -945 -945 -945 -945 -945 272 290 -945 -945 -945 -945 273 -945 -945 -945 292 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 209 -945 -945 130 -945 -945 -945 -945 -945 -945 306 -945 -945 -945 -945 -945 -945 232 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 196 -945 414 -945 -945 -945 -945 114 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 314 -945 -945 -945 -945 332 -945 -945 283 -945 -945 -945 -945 -945 -945 -945 -945 37 -945 -945 -945 -945 -945 -945 -945 132 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 425 -945 -945 -945 -945 -945 83 -945 -945 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 443 -945 -945 -945 -945 -945 -945 -945 -945 -945 318 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 537 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 318 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 385 -945 -945 -945 -945 -945 -945 396 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 196 -945 -945 -945 -945 -945 -945 -945 -945 -945 443 -945 -945 -945 -945 206 -945 -945 -945 -945 296 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 487 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 51 -945 -945 -945 -945 -945 -945 333 -945 -945 -945 -945 -945 -945 -945 -945 272 -945 -945 -945 51 -945 -945 -945 -945 -945 -945 -945 -945 269 -945 -945 -945 -945 -945 -945 -945 132 -945 -945 251 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 332 -945 401 283 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 114 132 -945 -945 209 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 456 -945 -945 -945 -945 -945 -945 -945 -945 51 -945 -945 -945 -945 -945 -945 -945 -945 -945 464 -945 256 -945 -945 -945 114 -945 -945 -945 -945 -945 215 -945 -945 87 -945 -945 325 -945 -945 -945 -945 -945 83 -945 -945 -945 -945 -945 -945 -945 -945 289 -945 187 -945 -945 -945 -945 -945 256 -945 -945 -945 105 -945 -945 -945 -945 -945 -945 273 -945 -945 287 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 175 -945 -945 -945 356 -945 -945 -945 105 -945 290 -945 -945 -945 -945 -945 -945 -945 87 -945 -945 -945 196 -945 -945 156 299 -945 -945 -945 -945 -945 -945 -945 -945 115 289 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 559 -945 -945 -945 -945 -945 -945 -945 -945 -945 325 -945 -945 -945 -945 -945 241 -945 -945 132 -945 -945 -945 -945 -945 130 -945 -945 -945 333 -945 -945 -945 -945 314 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 246 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 443 -945 -945 -945 130 -945 246 -945 -945 267 -945 306 -945 -945 -945 -945 -945 -945 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 41 nsites= 7 E= 2.5e-075 0.000000 0.000000 0.285714 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.428571 0.000000 0.000000 0.142857 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.714286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.142857 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.285714 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.142857 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.142857 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.142857 0.000000 0.428571 0.000000 0.000000 0.285714 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [LD][AV][HQ][PM][GE][EG][TV][DS][AV][LN][VP]AK[YF]LNRLSD[YL]LF[IT]L[AS]R[VY]A[NA][MP][KD][EG][GD][VN][LQ][EW][KR][IP][YG][GK] -------------------------------------------------------------------------------- Time 1.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 29 sites = 7 llr = 423 E-value = 3.2e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A :::31:::::::::::4:44:6:::::4: pos.-specific C :::::::::::4::::1:::::::1:::: probability D :1::4:::::::4::a:::6::::::1:1 matrix E 1:::46::::::1::::::::::::13:: F ::4:::::::::::6:::::::::::::: G :::::::::::::::::a1:::::::::: H 4::::::::::1::::::::::::::::: I ::4::::::a::::::::::::1:3:::: K :1::::::4::::::::::::::::::1: L ::1:::a1:::::a::::::a:::::::: M :1::::::::::1:::::::::::1:::: N :::::::::::4:::::::::::::::3: P :1:::::::::::::::::::::9::::3 Q 13:::::64:a:::4::::::::::1::: R :::::::3::::::::::::::::3:1:4 S ::::::::::::1:::::4::4:::441: T 31:6::::1:::1:::::::::9:1:::: V :::1:4::::::::::4::::::1:3::1 W ::::::::::::::::::::::::::::: Y ::::::::::::::::::::::::::::: bits 6.8 6.1 5.5 4.8 ** Relative 4.1 *** ** Entropy 3.4 ** **** *** * * ** (87.1 bits) 2.7 * ********** ***** ***** 2.0 ***************************** 1.4 ***************************** 0.7 ***************************** 0.0 ----------------------------- Multilevel HQFTDELQKIQCDLFDAGADLATPISSAR consensus T IAEV RQ N Q V SA S RVENP sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- MMAB_MOUSE 102 9.33e-31 FAMELVTEKG HMFAEELQKIQCMLQDVGSALATPRSSAR EAHLKHTAFQ PDUO_MYCTU 57 1.79e-29 GAALALGHPD TQITDVLRQIQNDLFDAGADLSTPIVENP KHPPLRIAQS PDUO_MYCBO 57 1.79e-29 GAALALGHPD TQITDVLRQIQNDLFDAGADLSTPIVENP KHPPLRIAQS MMAB_HUMAN 108 2.08e-29 FALELVTEKG HTFAEELQKIQCTLQDVGSALATPCSSAR EAHLKYTTFK MMAB_BOVIN 102 6.70e-29 FAMELIAEKG HPFVEELQKIQCSLQDVGSALATPRSSAR EAHLKHATFE PDUO_MYCLE 57 8.71e-28 GVALALGNPD QKITDVLQQIQNDLFDAGADLSTPMQDSV RNPEYPQLRI PDUO_BACSU 54 2.02e-23 LAELSGQPGF EDLTAELLTIQHELFDCGGDLAIVTERKD YKLTEESVSF -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_MOUSE 9.3e-31 101_[4]_107 PDUO_MYCTU 1.8e-29 56_[4]_108 PDUO_MYCBO 1.8e-29 56_[4]_108 MMAB_HUMAN 2.1e-29 107_[4]_114 MMAB_BOVIN 6.7e-29 101_[4]_111 PDUO_MYCLE 8.7e-28 56_[4]_106 PDUO_BACSU 2e-23 53_[4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=29 seqs=7 MMAB_MOUSE ( 102) HMFAEELQKIQCMLQDVGSALATPRSSAR 1 PDUO_MYCTU ( 57) TQITDVLRQIQNDLFDAGADLSTPIVENP 1 PDUO_MYCBO ( 57) TQITDVLRQIQNDLFDAGADLSTPIVENP 1 MMAB_HUMAN ( 108) HTFAEELQKIQCTLQDVGSALATPCSSAR 1 MMAB_BOVIN ( 102) HPFVEELQKIQCSLQDVGSALATPRSSAR 1 PDUO_MYCLE ( 57) QKITDVLQQIQNDLFDAGADLSTPMQDSV 1 PDUO_BACSU ( 54) EDLTAELLTIQHELFDCGGDLAIVTERKD 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 1450 bayes= 8.29562 E= 3.2e-045 -945 -945 -945 130 -945 -945 450 -945 -945 -945 -945 -945 -945 199 -945 -945 214 -945 -945 -945 -945 -945 115 -945 -945 -945 -945 -945 167 -945 306 -945 156 299 -945 -945 114 -945 -945 -945 -945 -945 -945 -945 364 -945 -945 333 -945 37 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 151 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 314 132 -945 -945 51 -945 273 289 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 330 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 290 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 318 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 37 -945 -945 -945 399 183 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 325 -945 -945 -945 -945 357 -945 -945 114 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 455 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 479 -945 -945 -945 -945 -945 -945 -945 475 -945 -945 -945 -945 292 -945 -945 -945 -945 414 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 273 130 -945 -945 -945 -945 -945 -945 306 -945 -945 -945 -945 105 114 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 318 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 406 -945 -945 -945 -945 -945 -945 -945 -945 357 -945 -945 -945 -945 -945 -945 -945 -945 396 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 209 316 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 290 -945 -945 -945 -945 -945 -945 -945 368 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 209 -945 -945 -945 -945 87 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 209 -945 315 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 318 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 251 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 263 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 175 -945 -945 -945 -945 -945 -945 -945 -945 372 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 414 -945 -945 -945 -945 132 -945 -945 -945 316 -945 -945 -945 -945 -945 275 -945 -945 306 -945 -945 -945 183 -945 114 -945 -945 -945 -945 -945 -945 130 -945 -945 -945 -945 -945 -945 -945 -945 -945 199 -945 263 -945 232 -945 -945 -945 -945 115 230 -945 -945 -945 -945 -945 -945 -945 -945 -945 -945 83 263 -945 -945 -945 -945 209 -945 -945 -945 -945 -945 -945 -945 167 -945 -945 356 -945 -945 -945 105 -945 -945 -945 -945 -945 -945 115 -945 -945 -945 -945 -945 -945 -945 -945 -945 256 -945 241 -945 -945 132 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 7 E= 3.2e-045 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.142857 0.000000 0.142857 0.285714 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.428571 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.142857 0.000000 0.000000 0.142857 0.000000 0.428571 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.571429 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.142857 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.285714 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.428571 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.142857 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.428571 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.428571 0.000000 0.000000 0.142857 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [HT]Q[FI][TA][DE][EV]L[QR][KQ]IQ[CN]DL[FQ]D[AV]G[AS][DA]L[AS]TP[IR][SV][SE][AN][RP] -------------------------------------------------------------------------------- Time 1.49 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 39 sites = 3 llr = 302 E-value = 8.9e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A :::::::::::a3:::::::::::::::::::::::::: pos.-specific C ::::::::7:::3:::7:::::::::::::::::::::: probability D :::::::::::::::::::::::::::::a:a::::::: matrix E ::::::::::::::::::::::::::::a:::::::::: F :::::::::3:::::::::a::::::::::::::::::: G a7::a::a::7::::::::::::a::a3::a:::::::: H ::::::::::::::::::::::::::::::::::::::: I ::::::::::::::::::::::::::::::::::::::: K :::::::::::::3::::::::::::::::::::::::7 L :::a:a:::7::::aa:::::::::::::::::3::::: M ::::::::::::::::::::::::::::::::::::::: N ::::::::::::::::::::::::::::::::::::::: P :::::::::::::::::a::::::a::::::::7:a::: Q ::::::::::::::::::::a::::a::::::::a:::: R ::a:::a:3:::37::::a:::a:::::::::a:::::: S :3::::::::3::::::::::a::::::::::::::aa: T ::::::::::::::::::::::::::::::::::::::3 V :::::::::::::::::::::::::::7::::::::::: W ::::::::::::::::::::::::::::::::::::::: Y ::::::::::::::::3:::::::::::::::::::::: bits 6.8 6.1 5.5 4.8 * ** * * Relative 4.1 * ** *** ** ** * **** Entropy 3.4 * ******* * ************* ***** ***** (145.0 bits) 2.7 *************************************** 2.0 *************************************** 1.4 *************************************** 0.7 *************************************** 0.0 --------------------------------------- Multilevel GGRLGLRGCLGAARLLCPRFQSRGPQGVEDGDRPQPSSK consensus S RFS CK Y G L T sequence R -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------------------------- MMAB_BOVIN 7 2.23e-46 MAVWGP GGRLGLRGCLGARKLLCPRFQSRGPQGVEDGDRPQPSSK TPKVPKIYTK MMAB_HUMAN 13 2.12e-45 VCGLGSRLGL GSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSK TPRIPKIYTK MMAB_MOUSE 7 3.84e-44 MAVWLF GGRLGLRGRLSACRLLCPRFQSRGPQGGEDGDRLQPSST AAKIPKIYTK -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_BOVIN 2.2e-46 6_[5]_196 MMAB_HUMAN 2.1e-45 12_[5]_199 MMAB_MOUSE 3.8e-44 6_[5]_192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=39 seqs=3 MMAB_BOVIN ( 7) GGRLGLRGCLGARKLLCPRFQSRGPQGVEDGDRPQPSSK 1 MMAB_HUMAN ( 13) GSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSK 1 MMAB_MOUSE ( 7) GGRLGLRGRLSACRLLCPRFQSRGPQGGEDGDRLQPSST 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 39 n= 1370 bayes= 9.28014 E= 8.9e-020 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 309 -823 -823 -823 -823 -823 -823 -823 -823 -823 227 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 538 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 205 -823 -823 -823 -823 -823 -823 -823 -823 -823 328 -823 -823 -823 -823 259 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 309 -823 -823 -823 -823 -823 -823 -823 -823 -823 227 -823 -823 -823 -823 331 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 173 438 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 205 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 289 -823 -823 -823 -823 -823 305 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 538 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 364 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 436 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 486 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 479 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 385 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 436 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 479 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 209 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 354 -823 -823 -823 -823 -823 411 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 395 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 368 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 395 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 159 -823 -823 378 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 479 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 436 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 385 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 385 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 389 -823 -823 -823 -823 -823 -823 -823 236 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 39 nsites= 3 E= 8.9e-020 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- G[GS]RLGLRG[CR][LF][GS]A[ACR][RK]LL[CY]PRFQSRGPQG[VG]EDGDR[PL]QPSS[KT] -------------------------------------------------------------------------------- Time 1.62 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 9 sites = 3 llr = 75 E-value = 1.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :a::::33: pos.-specific C ::::::::: probability D ::::::::: matrix E a:::::::: F ::::::::a G ::::::::: H ::a::7::: I ::::::::: K ::::a:::: L :::a::::: M ::::::::: N ::::::::: P ::::::::: Q ::::::::: R ::::::::: S ::::::::: T ::::::77: V ::::::::: W ::::::::: Y :::::3::: bits 6.8 6.1 5.5 * 4.8 * ** * Relative 4.1 * * ** * Entropy 3.4 ****** * (36.0 bits) 2.7 ********* 2.0 ********* 1.4 ********* 0.7 ********* 0.0 --------- Multilevel EAHLKHTTF consensus YAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- MMAB_HUMAN 137 3.54e-12 ALATPCSSAR EAHLKYTTF KAGPILELEQ MMAB_MOUSE 131 8.08e-12 ALATPRSSAR EAHLKHTAF QEGPVLELER MMAB_BOVIN 131 8.08e-12 ALATPRSSAR EAHLKHATF EAGPILELEQ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_HUMAN 3.5e-12 136_[6]_105 MMAB_MOUSE 8.1e-12 130_[6]_98 MMAB_BOVIN 8.1e-12 130_[6]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=9 seqs=3 MMAB_HUMAN ( 137) EAHLKYTTF 1 MMAB_MOUSE ( 131) EAHLKHTAF 1 MMAB_BOVIN ( 131) EAHLKHATF 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 9 n= 1610 bayes= 9.51337 E= 1.6e-002 -823 -823 -823 411 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 331 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 572 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 447 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 514 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 364 173 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 336 -823 -823 -823 173 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 336 -823 -823 -823 -823 -823 -823 -823 486 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 9 nsites= 3 E= 1.6e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- EAHLK[HY][TA][TA]F -------------------------------------------------------------------------------- Time 1.73 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 8 sites = 3 llr = 65 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C :::::::: probability D :::::::: matrix E :::::::: F :::::::: G :::::::: H 7::::::: I :::::a:: K :::::::: L :::a:::: M :::::::: N :::::::: P :a7::::: Q ::3::::a R ::::a::: S :::::::: T ::::::3: V :::::::: W :::::::: Y 3::::::: bits 6.8 6.1 5.5 4.8 * * * Relative 4.1 ** * * Entropy 3.4 ****** * (31.4 bits) 2.7 ******** 2.0 ******** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel HPPLRIAQ consensus Y Q T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- PDUO_MYCTU 87 5.98e-11 LSTPIVENPK HPPLRIAQ SYIDRLEGWC PDUO_MYCBO 87 5.98e-11 LSTPIVENPK HPPLRIAQ SYIDRLEGWC PDUO_MYCLE 90 4.14e-10 PMQDSVRNPE YPQLRITQ THIDRLEEWC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- PDUO_MYCTU 6e-11 86_[7]_99 PDUO_MYCBO 6e-11 86_[7]_99 PDUO_MYCLE 4.1e-10 89_[7]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=8 seqs=3 PDUO_MYCTU ( 87) HPPLRIAQ 1 PDUO_MYCBO ( 87) HPPLRIAQ 1 PDUO_MYCLE ( 90) YPQLRITQ 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 1618 bayes= 9.52053 E= 1.1e+000 -823 -823 -823 -823 -823 -823 514 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 364 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 436 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 378 321 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 318 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 363 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 455 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 273 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 236 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 -823 479 -823 -823 -823 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 3 E= 1.1e+000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- [HY]P[PQ]LRI[AT]Q -------------------------------------------------------------------------------- Time 1.83 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 12 sites = 2 llr = 59 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A :::::5:::::: pos.-specific C :::::::::::: probability D ::::::::5::: matrix E ::a::::::5:: F :::::::::::5 G :::::5:::::: H ::::5::::::: I :::::::5:::: K ::::::::5::: L :::5::::::a: M ::::::5::5:: N :::::::::::5 P :::::::::::: Q :5:::::5:::: R a::::::::::: S :::5:::::::: T ::::::5::::: V :5:::::::::: W :::::::::::: Y ::::5::::::: bits 6.8 6.1 5.5 4.8 * Relative 4.1 * * * * * Entropy 3.4 *** * ****** (42.8 bits) 2.7 ************ 2.0 ************ 1.4 ************ 0.7 ************ 0.0 ------------ Multilevel RQELHAMIDELF consensus V SYGTQKM N sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ PDUO_CITFR 55 3.22e-15 CYASTRQAEL RQELHAMQKMLF VLGAELASDQ PDUO_BACSU 26 1.34e-13 VGGRTDKDSL RVESYGTIDELN SFIGLALAEL -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- PDUO_CITFR 3.2e-15 54_[8]_110 PDUO_BACSU 1.3e-13 25_[8]_156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=12 seqs=2 PDUO_CITFR ( 55) RQELHAMQKMLF 1 PDUO_BACSU ( 26) RVESYGTIDELN 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 12 n= 1586 bayes= 9.62936 E= 2.5e+004 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 363 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 379 -765 -765 -765 312 -765 -765 -765 -765 -765 410 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 217 -765 -765 -765 -765 -765 285 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 472 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 423 231 -765 -765 -765 -765 268 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 486 -765 -765 -765 -765 -765 294 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 355 -765 -765 -765 -765 -765 379 -765 -765 -765 -765 -765 -765 -765 -765 295 -765 -765 -765 -765 -765 347 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 311 -765 -765 -765 -765 -765 -765 486 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 317 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 386 -765 -765 -765 -765 -765 -765 436 -765 -765 -765 -765 -765 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 12 nsites= 2 E= 2.5e+004 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- R[QV]E[LS][HY][AG][MT][IQ][DK][EM]L[FN] -------------------------------------------------------------------------------- Time 1.94 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 8 sites = 2 llr = 40 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C :::::::: probability D ::a::5:: matrix E ::::::5: F :::::::: G :::::::: H :::::::: I :::::::: K a::::::: L :::5:::: M :::::::: N :a:::::: P :::5:::: Q :::::::: R ::::::5: S ::::a::5 T :::::::5 V :::::::: W :::::::: Y :::::::: bits 6.8 6.1 5.5 * 4.8 ** Relative 4.1 *** * Entropy 3.4 *** * (28.8 bits) 2.7 ******** 2.0 ******** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel KNDLSAES consensus P DRT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- MMAB_HUMAN 240 4.60e-10 KEGNQEKIYM KNDPSAES EGL MMAB_BOVIN 234 1.76e-09 KEGNPEKIYK KNDLSDRT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MMAB_HUMAN 4.6e-10 239_[9]_3 MMAB_BOVIN 1.8e-09 233_[9] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=8 seqs=2 MMAB_HUMAN ( 240) KNDPSAES 1 MMAB_BOVIN ( 234) KNDLSDRT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 1618 bayes= 9.65821 E= 1.9e+004 -765 -765 -765 -765 -765 -765 -765 -765 447 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 536 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 395 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 217 -765 -765 336 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 385 -765 -765 -765 -765 231 -765 295 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 311 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 263 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 285 294 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 2 E= 1.9e+004 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- KND[LP]S[AD][ER][ST] -------------------------------------------------------------------------------- Time 2.02 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 8 sites = 2 llr = 38 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability D 5::::::: matrix E :::::::: F :::::::: G ::a::5:: H :::::::: I :::::::: K :a:::::5 L :::5::a: M :::::::: N :::::::: P :::::::: Q 5::5:::: R :::::5:: S :::::::: T ::::a::: V :::::::5 W :::::::: Y :::::::: bits 6.8 6.1 5.5 4.8 * Relative 4.1 * * Entropy 3.4 *** * ** (27.6 bits) 2.7 ******** 2.0 ******** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel DKGLTGLK consensus Q Q R V sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- PDUO_BACSU 9 1.46e-09 MKLYTKTG DKGQTGLV GGRTDKDSLR PDUO_CITFR 76 2.16e-09 FVLGAELASD QKGLTRLK QRIGEEDIQA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- PDUO_BACSU 1.5e-09 8_[10]_177 PDUO_CITFR 2.2e-09 75_[10]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=8 seqs=2 PDUO_BACSU ( 9) DKGQTGLV 1 PDUO_CITFR ( 76) QKGLTRLK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 1618 bayes= 9.65821 E= 1.7e+005 -765 -765 295 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 379 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 447 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 368 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 217 -765 -765 -765 379 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 394 -765 -765 -765 -765 -765 -765 -765 -765 268 -765 -765 -765 -765 -765 -765 -765 -765 263 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 317 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 347 -765 -765 -765 -765 -765 -765 -765 -765 312 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- [DQ]KG[LQ]T[GR]L[KV] -------------------------------------------------------------------------------- Time 2.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- PDUO_BACSU 1.50e-100 8_[10(1.46e-09)]_9_[8(1.34e-13)]_16_[4(2.02e-23)]_6_[1(1.18e-44)]_[3(9.01e-34)]_14 PDUO_CITFR 3.16e-89 1_[2(3.84e-45)]_3_[8(3.22e-15)]_9_[10(2.16e-09)]_6_[1(6.86e-42)]_37 PDUO_MYCBO 1.00e-153 5_[2(3.58e-49)]_1_[4(1.79e-29)]_1_[7(5.98e-11)]_1_[1(9.27e-52)]_2_[3(4.84e-40)]_5 PDUO_MYCTU 1.00e-153 5_[2(3.58e-49)]_1_[4(1.79e-29)]_1_[7(5.98e-11)]_1_[1(9.27e-52)]_2_[3(4.84e-40)]_5 PDUO_MYCLE 8.20e-148 5_[2(7.52e-49)]_1_[4(8.71e-28)]_4_[7(4.14e-10)]_1_[1(5.55e-49)]_2_[3(3.25e-39)] MMAB_BOVIN 1.53e-204 6_[5(2.23e-46)]_4_[2(8.19e-51)]_2_[4(6.70e-29)]_[6(8.08e-12)]_3_[1(8.21e-53)]_[3(4.76e-41)]_[9(1.76e-09)] MMAB_MOUSE 4.07e-201 6_[5(3.84e-44)]_4_[2(1.06e-52)]_2_[4(9.33e-31)]_[6(8.08e-12)]_3_[1(4.76e-52)]_[3(8.79e-43)]_4 MMAB_HUMAN 4.63e-210 12_[5(2.12e-45)]_4_[2(8.28e-52)]_2_[4(2.08e-29)]_[6(3.54e-12)]_3_[1(2.67e-53)]_[3(3.96e-45)]_[9(4.60e-10)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: kodomo.fbb.msu.ru ********************************************************************************