RID: 5TZZRJFH016 Job Title:GAG_KORV Q9TTC2 Gag polyprotein (Core polyprotein) Program: BLASTP Query: GAG_KORV Q9TTC2 Gag polyprotein (Core polyprotein) (Matrix protein p15) ID: lcl|Query_68384(amino acid) Length: 127 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Koala retrov... NA 394239 266 266 100% 2e-87 100.00 521 Q9TTC2.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 266 266 100% 1e-82 100.00 1687 Q9TTC1.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Woolly monke... NA 11970 218 218 100% 6e-69 81.89 521 P03330.4 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 219 219 100% 5e-66 81.89 1687 P03359.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gibbon ape l... NA 11840 201 201 100% 2e-62 74.80 520 P21416.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 202 202 100% 4e-60 74.80 1686 P21414.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 139 139 77% 8e-39 65.00 538 P26806.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 140 140 77% 1e-38 65.00 1738 P26809.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 139 139 77% 2e-38 65.00 626 P0DOH5.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 138 138 77% 3e-38 65.00 538 P26805.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 139 139 77% 4e-38 65.00 1738 P26808.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 137 137 77% 4e-38 65.00 539 P26807.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 137 137 77% 6e-38 65.00 626 P0DOH6.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 138 138 77% 7e-38 65.66 1739 P26810.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 137 137 77% 1e-37 65.00 627 P0DOH0.1 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Abelson muri... NA 11788 125 125 77% 6e-36 60.00 235 P03333.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 11809 131 131 77% 8e-36 61.62 538 P03334.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 131 131 77% 8e-36 62.63 536 P27460.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 132 132 77% 1e-35 62.63 1733 P08361.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 31691 130 130 77% 1e-35 61.00 468 P32594.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 131 131 77% 1e-35 62.00 624 P0DOH4.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend splee... NA 355329 122 122 100% 5e-35 48.44 187 P03331.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 129 129 100% 6e-35 51.54 626 Q8UN02.2 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Moloney muri... NA 928306 127 127 77% 2e-34 60.61 538 P03332.4 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 128 128 77% 2e-34 60.61 1738 P03355.5 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 122 122 77% 1e-33 58.59 310 P29175.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 125 125 77% 2e-33 58.59 540 P21435.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 125 125 77% 4e-33 60.61 1733 Q2F7J0.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 124 124 77% 5e-33 60.61 536 Q2F7I9.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 124 124 77% 6e-33 59.60 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 124 124 77% 6e-33 59.60 1733 Q2F7J3.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 123 123 100% 6e-33 50.00 536 Q2F7J2.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 123 123 100% 7e-33 50.00 536 Q27ID9.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 123 123 77% 1e-32 58.59 1734 P03356.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 122 122 77% 1e-32 58.59 537 P03336.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 122 122 77% 2e-32 58.59 625 P0DOG8.1 RecName: Full=Core protein p15 [Feline sarcoma virus (STRAIN... Feline sarco... NA 11775 112 112 74% 4e-32 56.25 118 P03339.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Duplan murin... NA 11794 120 120 77% 5e-32 57.00 529 P23090.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 120 120 77% 6e-32 57.00 536 P29168.3 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 120 120 77% 1e-31 58.59 1734 Q7SVK7.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 119 119 77% 1e-31 58.59 537 P29167.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 115 115 74% 2e-31 57.29 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 117 117 74% 3e-31 57.29 371 P0DOG9.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 118 118 66% 8e-31 62.79 1727 P10272.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Baboon endog... NA 11764 117 117 66% 9e-31 62.79 537 P03341.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 114 114 74% 2e-30 56.25 340 P04322.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 114 114 74% 2e-30 56.25 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 115 115 74% 3e-30 56.25 414 P0DP83.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 115 115 74% 3e-30 56.25 425 P0DOH1.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 116 116 74% 3e-30 56.25 580 P0DOH3.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 115 115 74% 5e-30 56.25 506 P10262.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 115 115 77% 5e-30 56.57 1734 P11227.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 115 115 77% 7e-30 56.00 537 P11269.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 115 115 74% 1e-29 56.25 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 105 105 74% 1e-26 55.21 459 P03340.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 105 105 74% 1e-26 53.12 536 P0DOH2.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Avian spleen... NA 11899 83.2 83.2 94% 5e-19 37.80 313 P03342.1 RecName: Full=Transforming protein p29; Contains: RecName:... Rasheed rat ... NA 11816 52.4 52.4 25% 8e-08 71.88 248 P01114.1 RecName: Full=Natural cytotoxicity triggering receptor 3 ligan... Homo sapiens human 9606 47.8 47.8 88% 4e-06 29.84 454 Q68D85.1 RecName: Full=Natural cytotoxicity triggering receptor 3 ligan... Pongo abelii Sumatran ora... 9601 44.7 44.7 88% 5e-05 29.03 454 Q5RFR2.1 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Koala retrovirus] Sequence ID: Q9TTC2.3 Length: 521 Range 1: 2 to 128 Score:266 bits(680), Expect:2e-87, Method:Compositional matrix adjust., Identities:127/127(100%), Positives:127/127(100%), Gaps:0/127(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII Sbjct 2 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA Sbjct 62 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 121 Query 121 PSRLPIY 127 PSRLPIY Sbjct 122 PSRLPIY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 2 to 128 Score:266 bits(680), Expect:1e-82, Method:Compositional matrix adjust., Identities:127/127(100%), Positives:127/127(100%), Gaps:0/127(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII Sbjct 2 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA Sbjct 62 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 121 Query 121 PSRLPIY 127 PSRLPIY Sbjct 122 PSRLPIY 128 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Woolly monkey sarcoma virus] Sequence ID: P03330.4 Length: 521 Range 1: 2 to 128 Score:218 bits(556), Expect:6e-69, Method:Compositional matrix adjust., Identities:104/127(82%), Positives:111/127(87%), Gaps:0/127(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ STPLSLTLDHWKDV+TRAHNLSV+IRKGKWQTFCSSEWPTF VGWPPEGTFN S+I Sbjct 2 GQNNSTPLSLTLDHWKDVRTRAHNLSVKIRKGKWQTFCSSEWPTFGVGWPPEGTFNLSVI 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 AVKRIVFQETGGHPDQVPYI+VWQDL+ SPPPWVPP AKIAV S +N R + GRPSA Sbjct 62 FAVKRIVFQETGGHPDQVPYIVVWQDLAQSPPPWVPPSAKIAVVSSPENTRGPSAGRPSA 121 Query 121 PSRLPIY 127 P R PIY Sbjct 122 PPRPPIY 128 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 2 to 128 Score:219 bits(557), Expect:5e-66, Method:Compositional matrix adjust., Identities:104/127(82%), Positives:111/127(87%), Gaps:0/127(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ STPLSLTLDHWKDV+TRAHNLSV+IRKGKWQTFCSSEWPTF VGWPPEGTFN S+I Sbjct 2 GQNNSTPLSLTLDHWKDVRTRAHNLSVKIRKGKWQTFCSSEWPTFGVGWPPEGTFNLSVI 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 AVKRIVFQETGGHPDQVPYI+VWQDL+ SPPPWVPP AKIAV S +N R + GRPSA Sbjct 62 FAVKRIVFQETGGHPDQVPYIVVWQDLAQSPPPWVPPSAKIAVVSSPENTRGPSAGRPSA 121 Query 121 PSRLPIY 127 P R PIY Sbjct 122 PPRPPIY 128 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Gibbon ape leukemia virus] Sequence ID: P21416.3 Length: 520 Range 1: 2 to 125 Score:201 bits(512), Expect:2e-62, Method:Compositional matrix adjust., Identities:95/127(75%), Positives:108/127(85%), Gaps:3/127(2%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ STP+SLTL+HW+DV+TRAHNLSVEI+KGKWQTFCSSEWPTF VGWPPEGTFN S+I Sbjct 2 GQDNSTPISLTLNHWRDVRTRAHNLSVEIKKGKWQTFCSSEWPTFGVGWPPEGTFNLSVI 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 AVK+IVFQE GGHPDQVPYI+VWQDL+ +PPPWVP AK+AV S + R+ GRPSA Sbjct 62 FAVKKIVFQENGGHPDQVPYIVVWQDLAQNPPPWVPASAKVAVVS---DTRRPVAGRPSA 118 Query 121 PSRLPIY 127 P R PIY Sbjct 119 PPRPPIY 125 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 2 to 125 Score:202 bits(513), Expect:4e-60, Method:Compositional matrix adjust., Identities:95/127(75%), Positives:108/127(85%), Gaps:3/127(2%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ STP+SLTL+HW+DV+TRAHNLSVEI+KGKWQTFCSSEWPTF VGWPPEGTFN S+I Sbjct 2 GQDNSTPISLTLNHWRDVRTRAHNLSVEIKKGKWQTFCSSEWPTFGVGWPPEGTFNLSVI 61 Query 61 SAVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSA 120 AVK+IVFQE GGHPDQVPYI+VWQDL+ +PPPWVP AK+AV S + R+ GRPSA Sbjct 62 FAVKKIVFQENGGHPDQVPYIVVWQDLAQNPPPWVPASAKVAVVS---DTRRPVAGRPSA 118 Query 121 PSRLPIY 127 P R PIY Sbjct 119 PPRPPIY 125 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 2 to 101 Score:139 bits(350), Expect:8e-39, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:76/100(76%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHNLSVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 2 GQAVTTPLSLTLDHWKDVERTAHNLSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEAIAVDPPPWVRPFV 101 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 2 to 101 Score:140 bits(353), Expect:1e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:76/100(76%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHNLSVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 2 GQAVTTPLSLTLDHWKDVERTAHNLSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEAIAVDPPPWVRPFV 101 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 90 to 189 Score:139 bits(351), Expect:2e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:76/100(76%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHNLSVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 90 GQAVTTPLSLTLDHWKDVERTAHNLSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 150 TQVKIKVFSPGPHGHPDQVPYIVTWEAIAVDPPPWVRPFV 189 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 2 to 101 Score:138 bits(347), Expect:3e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:75/100(75%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 2 GQTATTPLSLTLDHWKDVERTAHNQSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAVDPPPWVKPFV 101 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 2 to 101 Score:139 bits(350), Expect:4e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:75/100(75%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 2 GQTATTPLSLTLDHWKDVERTAHNQSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAVDPPPWVKPFV 101 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 2 to 101 Score:137 bits(345), Expect:4e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:74/100(74%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVEIRK +W T CS+EWPTF VGWP +GTFNP II Sbjct 2 GQTVTTPLSLTLDHWKDVERTAHNQSVEIRKRRWVTLCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSSGPHGHPDQVPYIVTWEALAADPPPWVKPFV 101 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 90 to 189 Score:137 bits(346), Expect:6e-38, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:75/100(75%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVE+RK +W TFCS+EWPTF VGWP +GTFNP II Sbjct 90 GQTATTPLSLTLDHWKDVERTAHNQSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDII 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 150 TQVKIKVFSPGPHGHPDQVPYIVTWEALAVDPPPWVKPFV 189 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 2 to 100 Score:138 bits(348), Expect:7e-38, Method:Compositional matrix adjust., Identities:65/99(66%), Positives:74/99(74%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVEIRK +W T CS+EWPTF VGWP +GTFNP II Sbjct 2 GQTVTTPLSLTLDHWKDVERTAHNQSVEIRKRRWVTLCSAEWPTFNVGWPRDGTFNPDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSSGPHGHPDQVPYIVTWEALAADPPPWVKPF 100 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 90 to 189 Score:137 bits(345), Expect:1e-37, Method:Compositional matrix adjust., Identities:65/100(65%), Positives:74/100(74%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SVEIRK +W T CS+EWPTF VGWP +GTFNP II Sbjct 90 GQTVTTPLSLTLDHWKDVERTAHNQSVEIRKRRWVTLCSAEWPTFNVGWPRDGTFNPDII 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 150 TQVKIKVFSSGPHGHPDQVPYIVTWEALAADPPPWVKPFV 189 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; Contains: RecName: Full=Capsid protein p30; Short=CA [Abelson murine leukemia virus] Sequence ID: P03333.3 Length: 235 Range 1: 2 to 101 Score:125 bits(315), Expect:6e-36, Method:Compositional matrix adjust., Identities:60/100(60%), Positives:73/100(73%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFV 101 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Moloney murine sarcoma virus] Sequence ID: P03334.3 Length: 538 Range 1: 2 to 100 Score:131 bits(329), Expect:8e-36, Method:Compositional matrix adjust., Identities:61/99(62%), Positives:74/99(74%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLDHWKDVERLAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 2 to 100 Score:131 bits(329), Expect:8e-36, Method:Compositional matrix adjust., Identities:62/99(63%), Positives:73/99(73%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLDHWKDVERTAHNQSVDVKKRRWVTFCSVEWPTFNVGWPQDGTFNRDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPF 100 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 2 to 100 Score:132 bits(332), Expect:1e-35, Method:Compositional matrix adjust., Identities:62/99(63%), Positives:73/99(73%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLDHWKDVERTAHNQSVDVKKRRWVTFCSVEWPTFNVGWPQDGTFNRDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Moloney murine sarcoma virus (strain TS110)] Sequence ID: P32594.3 Length: 468 Range 1: 2 to 101 Score:130 bits(326), Expect:1e-35, Method:Compositional matrix adjust., Identities:61/100(61%), Positives:74/100(74%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLDHWKDVERIAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFV 101 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 90 to 189 Score:131 bits(329), Expect:1e-35, Method:Compositional matrix adjust., Identities:62/100(62%), Positives:73/100(73%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS EWPTF VGWP +GTFN II Sbjct 90 GQTVTTPLSLTLDHWKDVERTAHNQSVDVKKRRWVTFCSVEWPTFNVGWPQDGTFNRDII 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 150 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFV 189 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12 [Friend spleen focus-forming virus (isolate 502)] Sequence ID: P03331.3 Length: 187 Range 1: 2 to 129 Score:122 bits(305), Expect:5e-35, Method:Compositional matrix adjust., Identities:62/128(48%), Positives:80/128(62%), Gaps:1/128(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW+DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWEDVQRTASNQSVDVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQE-TGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPS 119 VK VF GHPDQVPYI+ W+ ++ PPPWV P ++ +G Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPFVSPKLSPSPTAPILPSGPSTQ 121 Query 120 APSRLPIY 127 P R +Y Sbjct 122 PPPRSALY 129 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 90 to 219 Score:129 bits(325), Expect:6e-35, Method:Compositional matrix adjust., Identities:67/130(52%), Positives:81/130(62%), Gaps:3/130(2%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 90 GQTVTTPLSLTLDHWKDVERIAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRP- 118 + VK VF GHPDQVPYI+ W+ L+ PPPW P S P Sbjct 150 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWAKPFVHPKPPPPLPPSAPSLPLEPP 209 Query 119 -SAPSRLPIY 127 S PSR +Y Sbjct 210 LSTPSRSSLY 219 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03332.4 Length: 538 Range 1: 2 to 100 Score:127 bits(320), Expect:2e-34, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:73/99(73%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPF 100 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 2 to 100 Score:128 bits(322), Expect:2e-34, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:73/99(73%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HWKDV+ AHN SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDLI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 2 to 100 Score:122 bits(305), Expect:1e-33, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:72/99(72%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW DV+ A N SV+++K +W TFCS+EWPTF+VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFDVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQE-TGGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 2 to 100 Score:125 bits(313), Expect:2e-33, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:72/99(72%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW+DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTITTPLSLTLDHWRDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNKDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 + VK VF GHPDQVPYI+ W+ ++ PPPW P Sbjct 62 TQVKIKVFSPGPHGHPDQVPYIVTWEAIAYDPPPWAKPF 100 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 2 to 100 Score:125 bits(313), Expect:4e-33, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:71/99(71%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 S VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPF 100 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 2 to 100 Score:124 bits(310), Expect:5e-33, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:71/99(71%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 S VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPF 100 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 2 to 100 Score:124 bits(311), Expect:6e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:71/99(71%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGVI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 S VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPF 100 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 2 to 100 Score:124 bits(311), Expect:6e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:71/99(71%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGVI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 S VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPF 100 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 2 to 129 Score:123 bits(309), Expect:6e-33, Method:Compositional matrix adjust., Identities:64/128(50%), Positives:77/128(60%), Gaps:1/128(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGVI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPS 119 S VK VF GHPDQVPYI+ W+ L+ PPPWV P G Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVSPKPPPLPTAPVLPPGPSAQ 121 Query 120 APSRLPIY 127 PSR +Y Sbjct 122 PPSRSALY 129 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 2 to 129 Score:123 bits(308), Expect:7e-33, Method:Compositional matrix adjust., Identities:64/128(50%), Positives:77/128(60%), Gaps:1/128(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL HW DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN +I Sbjct 2 GQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGVI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPS 119 S VK VF GHPDQVPYI+ W+ L+ PPPWV P G Sbjct 62 SQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVSPKPPPLPTAPVLPPGPSAQ 121 Query 120 APSRLPIY 127 PSR +Y Sbjct 122 PPSRSALY 129 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 2 to 100 Score:123 bits(309), Expect:1e-32, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:72/99(72%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW+DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWEDVQRIASNQSVDVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 2 to 100 Score:122 bits(306), Expect:1e-32, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:72/99(72%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW+DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWEDVQRIASNQSVDVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 100 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 90 to 188 Score:122 bits(307), Expect:2e-32, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:72/99(72%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW+DV+ A N SV+++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 90 GQTVTTPLSLTLEHWEDVQRIASNQSVDVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 149 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 150 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 188 >RecName: Full=Core protein p15 [Feline sarcoma virus (STRAIN GARDNER-RASHEED)] Sequence ID: P03339.3 Length: 118 Range 1: 2 to 97 Score:112 bits(280), Expect:4e-32, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Duplan murine leukemia virus] Sequence ID: P23090.3 Length: 529 Range 1: 2 to 101 Score:120 bits(302), Expect:5e-32, Method:Compositional matrix adjust., Identities:57/100(57%), Positives:71/100(71%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHWKDV+ A N SV++++ +W TFCS EWP+F+VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLDHWKDVQCIASNQSVDVKRRRWVTFCSVEWPSFDVGWPLDGTFNLDII 61 Query 61 SAVK-RIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 VK ++ GHPDQVPYI+ W+ L PPPWV P Sbjct 62 LQVKSKVTCPGPHGHPDQVPYIVTWEALVYHPPPWVKPFV 101 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 2 to 101 Score:120 bits(302), Expect:6e-32, Method:Compositional matrix adjust., Identities:57/100(57%), Positives:72/100(72%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW+DV+ A N SV++++ +W TFCS EWP+F+VGWP +GTFN II Sbjct 2 GQTITTPLSLTLEHWRDVQCIASNQSVDVKRRRWVTFCSVEWPSFDVGWPLDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 VK VF GHPDQVPYI+ W+ L+ PPPWV P Sbjct 62 LQVKSKVFCPGPHGHPDQVPYIVTWEALAYHPPPWVKPFV 101 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 2 to 100 Score:120 bits(302), Expect:1e-31, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:70/99(70%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW DV+ A N SV ++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWGDVQRIASNQSVGVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 2 to 100 Score:119 bits(299), Expect:1e-31, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:70/99(70%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW DV+ A N SV ++K +W TFCS+EWPTF VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWGDVQRIASNQSVGVKKRRWVTFCSAEWPTFGVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PPPWV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 2 to 97 Score:115 bits(289), Expect:2e-31, Method:Compositional matrix adjust., Identities:55/96(57%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTVTTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCKAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S VK+ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVKKKIFAPGPHGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 76 to 171 Score:117 bits(292), Expect:3e-31, Method:Compositional matrix adjust., Identities:55/96(57%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 76 GQTVTTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCKAEWVMMNVGWPREGTFSLDNI 135 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S VK+ +F GHPDQVPYI W+ L+ PP WV Sbjct 136 SQVKKKIFAPGPHGHPDQVPYITTWRSLATDPPSWV 171 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 15 to 100 Score:118 bits(296), Expect:8e-31, Method:Compositional matrix adjust., Identities:54/86(63%), Positives:63/86(73%), Gaps:1/86(1%) Query 14 HWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSIISAVKRIVFQET-G 72 H+ DV+ RAHNLSV +RKG+WQTFCSSEWPT VGWP +GTF+ S+I VK V Sbjct 15 HFSDVRARAHNLSVGVRKGRWQTFCSSEWPTLHVGWPRDGTFDLSVILQVKTKVMDPGPH 74 Query 73 GHPDQVPYIIVWQDLSNSPPPWVPPL 98 GHPDQV YII W+DL +PPPWV P Sbjct 75 GHPDQVAYIITWEDLVRNPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Baboon endogenous virus strain M7] Sequence ID: P03341.4 Length: 537 Range 1: 15 to 100 Score:117 bits(293), Expect:9e-31, Method:Compositional matrix adjust., Identities:54/86(63%), Positives:63/86(73%), Gaps:1/86(1%) Query 14 HWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSIISAVKRIVFQET-G 72 H+ DV+ RAHNLSV +RKG+WQTFCSSEWPT VGWP +GTF+ S+I VK V Sbjct 15 HFSDVRARAHNLSVGVRKGRWQTFCSSEWPTLHVGWPRDGTFDLSVILQVKTKVMDPGPH 74 Query 73 GHPDQVPYIIVWQDLSNSPPPWVPPL 98 GHPDQV YII W+DL +PPPWV P Sbjct 75 GHPDQVAYIITWEDLVRNPPPWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 2 to 97 Score:114 bits(285), Expect:2e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTIATPLSLTLDHWSEVRARAHNQGVEVRKKKWVTLCEAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 2 to 97 Score:114 bits(285), Expect:2e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQE-TGGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 76 to 171 Score:115 bits(287), Expect:3e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 76 GQTIATPLSLTLDHWSEVRARAHNQGVEVRKKKWVTLCEAEWVMMNVGWPREGTFSLDNI 135 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 136 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 171 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 79 to 174 Score:115 bits(287), Expect:3e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 79 GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 138 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 139 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 174 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 76 to 171 Score:116 bits(290), Expect:3e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 76 GQTVTTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 135 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 136 SQVEKKIFAPGPHGHPDQVPYITTWRSLATDPPSWV 171 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 2 to 97 Score:115 bits(287), Expect:5e-30, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 2 to 100 Score:115 bits(289), Expect:5e-30, Method:Compositional matrix adjust., Identities:56/99(57%), Positives:69/99(69%), Gaps:1/99(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW DV+ A N SVE++K + TFC +EWPTF+VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWGDVQRIASNQSVEVKKRRRVTFCPAEWPTFDVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPL 98 VK VF GHPDQVPYI+ W+ ++ PP WV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPSWVKPF 100 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 2 to 101 Score:115 bits(287), Expect:7e-30, Method:Compositional matrix adjust., Identities:56/100(56%), Positives:69/100(69%), Gaps:1/100(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTL+HW DV+ A N SVE++K + TFC +EWPTF+VGWP +GTFN II Sbjct 2 GQTVTTPLSLTLEHWGDVQRIASNQSVEVKKRRRVTFCPAEWPTFDVGWPQDGTFNLDII 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWVPPLA 99 VK VF GHPDQVPYI+ W+ ++ PP WV P Sbjct 62 LQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPSWVKPFV 101 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 2 to 97 Score:115 bits(288), Expect:1e-29, Method:Compositional matrix adjust., Identities:54/96(56%), Positives:65/96(67%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TPLSLTLDHW +V+ RAHN VE+RK KW T C +EW VGWP EGTF+ I Sbjct 2 GQTITTPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNI 61 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKKIFAPGPYGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 2 to 97 Score:105 bits(263), Expect:1e-26, Method:Compositional matrix adjust., Identities:53/96(55%), Positives:61/96(63%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TP SLTLDHW +V+TRAHN +E+RK KW T C +EW VGWP EGT Sbjct 2 GQTVTTPPSLTLDHWSEVRTRAHNQGIEVRKKKWITLCEAEWVMMNVGWPREGTPPLDNT 61 Query 61 SAV-KRIVFQETGGHPDQVPYIIVWQDLSNSPPPWV 95 S V KRI GHPDQVPYI W+ L+ PP WV Sbjct 62 SQVEKRIFAPGPHGHPDQVPYITTWRSLATDPPSWV 97 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 79 to 174 Score:105 bits(263), Expect:1e-26, Method:Compositional matrix adjust., Identities:51/96(53%), Positives:62/96(64%), Gaps:1/96(1%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSII 60 GQ +TP SLTLDHW +V+TRAHN +E+RK KW T C +EW VGWP EGT Sbjct 79 GQTVTTPPSLTLDHWSEVRTRAHNQGIEVRKKKWITLCEAEWVMMNVGWPREGTPPLDNT 138 Query 61 SAVKRIVFQET-GGHPDQVPYIIVWQDLSNSPPPWV 95 S V++ +F GHPDQVPYI W+ L+ PP WV Sbjct 139 SQVEKRIFAPGPHGHPDQVPYITTWRSLATDPPSWV 174 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Avian spleen necrosis virus] Sequence ID: P03342.1 Length: 313 Range 1: 7 to 130 Score:83.2 bits(204), Expect:5e-19, Method:Compositional matrix adjust., Identities:48/127(38%), Positives:69/127(54%), Gaps:10/127(7%) Query 2 QGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSIIS 61 +G TPL L ++ D K RA + ++ + C EWPTF VGWP EGT + +++ Sbjct 7 KGLLTPLECILKNFSDFKKRAGDYGEDVDSFALRKLCELEWPTFGVGWPKEGTLDFKVVA 66 Query 62 AVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPL-------AKIAVASGQDNGRKSA 114 AV+ IVF GHPDQV YI VW D++ P ++ +K+ +AS + N R+ Sbjct 67 AVRNIVFGNP-GHPDQVIYITVWTDITIERPKYLKSCGCKPHRTSKVLLASQKVNPRRPV 125 Query 115 GGRPSAP 121 PSAP Sbjct 126 --LPSAP 130 >RecName: Full=Transforming protein p29; Contains: RecName: Full=Transforming protein p21; Flags: Precursor [Rasheed rat sarcoma virus] Sequence ID: P01114.1 Length: 248 Range 1: 2 to 33 Score:52.4 bits(124), Expect:8e-08, Method:Compositional matrix adjust., Identities:23/32(72%), Positives:27/32(84%), Gaps:0/32(0%) Query 1 GQGESTPLSLTLDHWKDVKTRAHNLSVEIRKG 32 GQ +TPLSLTLDHWKDV+ RA + SVEI+KG Sbjct 2 GQSLTTPLSLTLDHWKDVRDRARDQSVEIKKG 33 >RecName: Full=Natural cytotoxicity triggering receptor 3 ligand 1; AltName: Full=B7 homolog 6; Short=B7-H6; Flags: Precursor [Homo sapiens] Sequence ID: Q68D85.1 Length: 454 Range 1: 296 to 410 Score:47.8 bits(112), Expect:4e-06, Method:Compositional matrix adjust., Identities:37/124(30%), Positives:56/124(45%), Gaps:20/124(16%) Query 6 TPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEV----GWPPEGTFNPSIIS 61 TPL L HW T+ ++K FC+ WP++++ WPPEG+ N + I Sbjct 296 TPLKCILKHWNSFDTQT------LKKEHLIFFCTRAWPSYQLQDGEAWPPEGSVNINTIQ 349 Query 62 AVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPW----VPPLAKIAVASGQ---DNGRKSA 114 + VF G +VPY+ + L ++P + P A + V SG+ DN KS Sbjct 350 QLD--VFCRQEGKWSEVPYVQAFFALRDNPDLCQCCRIDP-ALLTVTSGKSIDDNSTKSE 406 Query 115 GGRP 118 P Sbjct 407 KQTP 410 >RecName: Full=Natural cytotoxicity triggering receptor 3 ligand 1; AltName: Full=B7 homolog 6; Short=B7-H6; Flags: Precursor [Pongo abelii] Sequence ID: Q5RFR2.1 Length: 454 Range 1: 296 to 410 Score:44.7 bits(104), Expect:5e-05, Method:Compositional matrix adjust., Identities:36/124(29%), Positives:56/124(45%), Gaps:20/124(16%) Query 6 TPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEV----GWPPEGTFNPSIIS 61 TPL + HW T+ ++K FC+ WP++++ WPPEG+ N + I Sbjct 296 TPLKCIMKHWNSFDTQT------LKKEHLVFFCTWAWPSYQLQDGEAWPPEGSVNINTIQ 349 Query 62 AVKRIVFQETGGHPDQVPYIIVWQDLSNSPPPW----VPPLAKIAVASGQ---DNGRKSA 114 + VF G +VPY+ + L ++P + P A + V SG+ DN KS Sbjct 350 QLD--VFCRQEGKWSEVPYVQAFFALRDNPDLCQCCRIDP-ALLTVTSGKSIDDNSPKSE 406 Query 115 GGRP 118 P Sbjct 407 KQTP 410