RID: 0CJU0PCT016 Job Title:Capsid protein p30 (id="PRO_0000249429") Program: BLASTP Query: Capsid protein p30 (id="PRO_0000249429") from GAG_KORV Q9TTC2 Gag polyprotein ID: lcl|Query_7170863(amino acid) Length: 259 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Koala retrov... NA 394239 527 527 100% 0.0 100.00 521 Q9TTC2.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 528 528 100% 1e-176 100.00 1687 Q9TTC1.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gibbon ape l... NA 11840 451 451 100% 5e-159 93.05 520 P21416.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Woolly monke... NA 11970 446 446 100% 5e-157 93.82 521 P03330.4 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 451 451 100% 5e-148 93.05 1686 P21414.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 446 446 100% 3e-146 93.82 1687 P03359.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Baboon endog... NA 11764 315 315 94% 2e-105 65.84 537 P03341.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 301 301 97% 4e-101 59.23 459 P03340.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 302 302 97% 6e-101 59.23 506 P10262.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 301 301 97% 2e-100 59.23 536 P0DOH2.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 303 303 97% 3e-100 59.23 580 P0DOH3.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 316 316 98% 5e-99 63.22 1727 P10272.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 296 296 100% 2e-98 57.41 536 P27460.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 295 295 93% 8e-98 60.47 538 P26806.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 296 296 100% 3e-97 57.41 624 P0DOH4.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 293 293 94% 5e-97 58.66 537 P11269.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 293 293 94% 6e-97 59.45 537 P29167.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 295 295 93% 2e-96 60.47 626 P0DOH5.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Moloney muri... NA 928306 291 291 100% 3e-96 57.04 538 P03332.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 291 291 94% 5e-96 56.59 539 P26807.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 290 290 94% 6e-96 56.20 536 P29168.3 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 290 290 81% 8e-96 64.11 536 Q27ID9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 290 290 100% 9e-96 57.78 540 P21435.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 289 289 81% 2e-95 64.11 538 P26805.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Duplan murin... NA 11794 288 288 94% 5e-95 55.81 529 P23090.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 290 290 94% 5e-95 56.59 627 P0DOH0.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 288 288 81% 7e-95 63.64 536 Q2F7J2.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 287 287 81% 1e-94 63.64 536 Q2F7I9.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 302 302 97% 2e-94 59.23 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 11809 286 286 100% 3e-94 55.56 538 P03334.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 288 288 81% 5e-94 64.11 626 P0DOH6.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 285 285 94% 7e-94 57.48 537 P03336.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 287 287 100% 8e-94 56.30 626 Q8UN02.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 31691 283 283 87% 9e-94 60.89 468 P32594.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 285 285 94% 8e-93 55.43 625 P0DOG8.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 296 296 100% 3e-92 57.41 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 295 295 93% 6e-92 60.47 1738 P26809.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 292 292 94% 6e-91 58.66 1734 P11227.2 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 292 292 94% 8e-91 59.45 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 291 291 94% 2e-90 56.59 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 291 291 100% 2e-90 57.04 1738 P03355.5 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 289 289 81% 8e-90 64.11 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 288 288 81% 2e-89 64.11 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 286 286 81% 7e-89 63.64 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 286 286 81% 7e-89 63.64 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 285 285 94% 3e-88 55.43 1734 P03356.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 201 201 58% 1e-63 60.38 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 202 202 58% 9e-63 60.38 425 P0DOH1.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 195 195 55% 4e-61 60.93 340 P04322.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 195 195 55% 3e-60 60.93 414 P0DP83.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 139 139 39% 6e-40 60.19 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 139 139 39% 3e-39 60.19 371 P0DOG9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 120 120 34% 1e-32 62.07 310 P29175.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Avian spleen... NA 11899 108 108 39% 5e-28 46.55 313 P03342.1 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Koala retrovirus] Sequence ID: Q9TTC2.3 Length: 521 Range 1: 197 to 455 Score:527 bits(1357), Expect:0.0, Method:Compositional matrix adjust., Identities:259/259(100%), Positives:259/259(100%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD Sbjct 197 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 256 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE Sbjct 257 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 316 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 376 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET Sbjct 377 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 436 Query 241 EERERRRDRRQEKNLTKIL 259 EERERRRDRRQEKNLTKIL Sbjct 437 EERERRRDRRQEKNLTKIL 455 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 197 to 455 Score:528 bits(1360), Expect:1e-176, Method:Compositional matrix adjust., Identities:259/259(100%), Positives:259/259(100%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD Sbjct 197 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 256 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE Sbjct 257 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 316 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 376 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET Sbjct 377 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 436 Query 241 EERERRRDRRQEKNLTKIL 259 EERERRRDRRQEKNLTKIL Sbjct 437 EERERRRDRRQEKNLTKIL 455 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Gibbon ape leukemia virus] Sequence ID: P21416.3 Length: 520 Range 1: 196 to 454 Score:451 bits(1159), Expect:5e-159, Method:Compositional matrix adjust., Identities:241/259(93%), Positives:252/259(97%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA+GPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENP GLTGLLESLMFSHQPTWD Sbjct 196 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 255 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQ+LFTTEERERILLEARKNVLG NGAPTQLENLINEAFPLNRP WD+NTA GRE Sbjct 256 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRE 315 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGP EPPSVFLERLMEAYRRYTPFDPSSEG Sbjct 316 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEG 375 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 Q+AAVAM+FIGQSAPDIKKKLQRLEGLQD+SLQDL+KEAEKVYHKRETEEE+QEREKKE Sbjct 376 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYHKRETEEERQEREKKEA 435 Query 241 EERERRRDRRQEKNLTKIL 259 EE+ERRRDR ++KNLTKIL Sbjct 436 EEKERRRDRPKKKNLTKIL 454 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Woolly monkey sarcoma virus] Sequence ID: P03330.4 Length: 521 Range 1: 197 to 455 Score:446 bits(1146), Expect:5e-157, Method:Compositional matrix adjust., Identities:243/259(94%), Positives:253/259(97%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA+GPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENP GLTGLLESLMFSHQPTWD Sbjct 197 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 256 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQ+LFTTEERERILLEARKNVLG NGAPTQLENLINEAFPLNRPQWD+NTA GRE Sbjct 257 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRE 316 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGP EPPSVFLERLMEAYRRYTPFDPS EG Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEG 376 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 Q+AAVAM+FIGQSAPDIKKKLQRLEGLQD+SLQDL++EAEKVYHKRETEEE+QEREKKE Sbjct 377 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVREAEKVYHKRETEEERQEREKKEA 436 Query 241 EERERRRDRRQEKNLTKIL 259 EERERRRDRRQEKNLT+IL Sbjct 437 EERERRRDRRQEKNLTRIL 455 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 196 to 454 Score:451 bits(1161), Expect:5e-148, Method:Compositional matrix adjust., Identities:241/259(93%), Positives:252/259(97%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA+GPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENP GLTGLLESLMFSHQPTWD Sbjct 196 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 255 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQ+LFTTEERERILLEARKNVLG NGAPTQLENLINEAFPLNRP WD+NTA GRE Sbjct 256 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRE 315 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGP EPPSVFLERLMEAYRRYTPFDPSSEG Sbjct 316 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEG 375 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 Q+AAVAM+FIGQSAPDIKKKLQRLEGLQD+SLQDL+KEAEKVYHKRETEEE+QEREKKE Sbjct 376 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYHKRETEEERQEREKKEA 435 Query 241 EERERRRDRRQEKNLTKIL 259 EE+ERRRDR ++KNLTKIL Sbjct 436 EEKERRRDRPKKKNLTKIL 454 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 197 to 455 Score:446 bits(1148), Expect:3e-146, Method:Compositional matrix adjust., Identities:243/259(94%), Positives:253/259(97%), Gaps:0/259(0%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA+GPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENP GLTGLLESLMFSHQPTWD Sbjct 197 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 256 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLLQ+LFTTEERERILLEARKNVLG NGAPTQLENLINEAFPLNRPQWD+NTA GRE Sbjct 257 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRE 316 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGP EPPSVFLERLMEAYRRYTPFDPS EG Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEG 376 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET 240 Q+AAVAM+FIGQSAPDIKKKLQRLEGLQD+SLQDL++EAEKVYHKRETEEE+QEREKKE Sbjct 377 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVREAEKVYHKRETEEERQEREKKEA 436 Query 241 EERERRRDRRQEKNLTKIL 259 EERERRRDRRQEKNLT+IL Sbjct 437 EERERRRDRRQEKNLTRIL 455 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Baboon endogenous virus strain M7] Sequence ID: P03341.4 Length: 537 Range 1: 235 to 477 Score:315 bits(807), Expect:2e-105, Method:Compositional matrix adjust., Identities:160/243(66%), Positives:199/243(81%), Gaps:0/243(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 +QYWPFS++DLYNWK+++PSFS++P LT L+ES++ +HQPTWDDCQQLLQVL TTEER+ Sbjct 235 IQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTEERQ 294 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARKNV G G PTQL N I+E FPL RP WD+ TA GRE L +YR+ L+AGLKGA Sbjct 295 RVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQALLAGLKGA 354 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 +RPTNLAKVR + QG E P+ F+ERL+E +R YTPFDP + KA VAMSFI Q+A D Sbjct 355 GKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAMSFIDQAALD 414 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKETEERERRRDRRQEKNLT 256 IK KLQRL+G+Q H LQ+L++EAEKVY+KRET EE++ R KE EERE RRDR+++K+LT Sbjct 415 IKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARLIKEQEEREDRRDRKRDKHLT 474 Query 257 KIL 259 KIL Sbjct 475 KIL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 190 to 449 Score:301 bits(771), Expect:4e-101, Method:Compositional matrix adjust., Identities:154/260(59%), Positives:198/260(76%), Gaps:8/260(3%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWK ++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+EAFPL RP WD T GR Sbjct 250 DDCQQLLQALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGR 309 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSE 179 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP Sbjct 310 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDP 369 Query 180 GQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKE 239 GQ A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+KRET EE++ER + Sbjct 370 GQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQR 429 Query 240 TEERERRRDRRQEKNLTKIL 259 EER+++R + K L ++ Sbjct 430 QEERDKKRHKEMTKVLATVV 449 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 190 to 449 Score:302 bits(774), Expect:6e-101, Method:Compositional matrix adjust., Identities:154/260(59%), Positives:198/260(76%), Gaps:8/260(3%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 250 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 309 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSE 179 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP Sbjct 310 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDP 369 Query 180 GQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKE 239 GQ A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+KRET EE++ER + Sbjct 370 GQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQR 429 Query 240 TEERERRRDRRQEKNLTKIL 259 EER+++R + K L ++ Sbjct 430 QEERDKKRHKEMTKVLATVV 449 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 267 to 526 Score:301 bits(772), Expect:2e-100, Method:Compositional matrix adjust., Identities:154/260(59%), Positives:198/260(76%), Gaps:8/260(3%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWK ++P FS++P LT L+ES++ +HQPTW Sbjct 267 PAEESQALPLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTW 326 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+EAFPL RP WD T GR Sbjct 327 DDCQQLLQALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGR 386 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSE 179 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP Sbjct 387 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDP 446 Query 180 GQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKE 239 GQ A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+KRET EE++ER + Sbjct 447 GQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQR 506 Query 240 TEERERRRDRRQEKNLTKIL 259 EER+++R + K L ++ Sbjct 507 QEERDKKRHKEMTKVLATVV 526 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 264 to 523 Score:303 bits(775), Expect:3e-100, Method:Compositional matrix adjust., Identities:154/260(59%), Positives:198/260(76%), Gaps:8/260(3%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 264 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 323 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 324 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 383 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSE 179 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP Sbjct 384 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDP 443 Query 180 GQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKE 239 GQ A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+KRET EE++ER + Sbjct 444 GQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQR 503 Query 240 TEERERRRDRRQEKNLTKIL 259 EER+++R + K L ++ Sbjct 504 QEERDKKRHKEMTKVLATVV 523 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 217 to 477 Score:316 bits(809), Expect:5e-99, Method:Compositional matrix adjust., Identities:165/261(63%), Positives:204/261(78%), Gaps:7/261(2%) Query 6 GPPAEPNGLVPL-------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPT 58 GP + L PL QYWPFS++DLYNWK+++PSFS++P LT L+ES++ +HQPT Sbjct 217 GPSTWQSSLFPLRTVNRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPT 276 Query 59 WDDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEG 118 WDDCQQLLQVL TTEER+R+LLEARKNV G G PTQL N I+E FPL RP WD+ TA G Sbjct 277 WDDCQQLLQVLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPG 336 Query 119 RERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSS 178 RE L +YR+ L+AGLKGA +RPTNLAKVR + QG E P+ F+ERL+E +R YTPFDP + Sbjct 337 RESLRIYRQALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEA 396 Query 179 EGQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKK 238 KA VAMSFI Q+A DIK KLQRL+G+Q H LQ+L++EAEKVY+KRET EE++ R K Sbjct 397 PEHKATVAMSFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARLIK 456 Query 239 ETEERERRRDRRQEKNLTKIL 259 E EERE RRDR+++K+LTKIL Sbjct 457 EQEEREDRRDRKRDKHLTKIL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 214 to 476 Score:296 bits(759), Expect:2e-98, Method:Compositional matrix adjust., Identities:155/270(57%), Positives:200/270(74%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR+ G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 214 PLRSGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWD 266 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR Sbjct 267 DCQQLLGTLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRN 326 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L++YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 327 HLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 386 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L+ +L DL++EAEK+++K + Sbjct 387 QETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRET 446 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 447 EEKEERRRAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 226 to 478 Score:295 bits(755), Expect:8e-98, Method:Compositional matrix adjust., Identities:153/253(60%), Positives:195/253(77%), Gaps:11/253(4%) Query 18 QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERER 77 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++R Sbjct 226 QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQR 285 Query 78 ILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGAA 137 +LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 286 VLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNAG 345 Query 138 RRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPDI 197 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPDI Sbjct 346 RSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPDI 405 Query 198 KKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKETE-----------ERERR 246 +KL+RLE L+ +L DL++EAEK+++KRET EE++ER ++ETE +RE+ Sbjct 406 GRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDVQREKE 465 Query 247 RDRRQEKNLTKIL 259 RDRR+ + ++K+L Sbjct 466 RDRRRHREMSKLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 302 to 564 Score:296 bits(758), Expect:3e-97, Method:Compositional matrix adjust., Identities:155/270(57%), Positives:200/270(74%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR+ G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 302 PLRSGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWD 354 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR Sbjct 355 DCQQLLGTLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRN 414 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L++YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 415 HLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 474 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L+ +L DL++EAEK+++K + Sbjct 475 QETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRET 534 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 535 EEKEERRRAEDEQKEKERDRRRHREMSKLL 564 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 224 to 477 Score:293 bits(750), Expect:5e-97, Method:Compositional matrix adjust., Identities:149/254(59%), Positives:194/254(76%), Gaps:11/254(4%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+MSFI QSAPD Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETEEEKQEREKKETEERER 245 I +KL+RLE L+ +L+DL++EAEK+++K R EE +ER + E E+RE+ Sbjct 404 IGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERRRAEDEQREK 463 Query 246 RRDRRQEKNLTKIL 259 RDRR+++ ++K+L Sbjct 464 ERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 224 to 477 Score:293 bits(749), Expect:6e-97, Method:Compositional matrix adjust., Identities:151/254(59%), Positives:196/254(77%), Gaps:11/254(4%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAP Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPA 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET-----------EERER 245 I +KL+RLE L+ +L DL++EAEK+++KRET EE++ER ++ET E+RE+ Sbjct 404 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAGDEQREK 463 Query 246 RRDRRQEKNLTKIL 259 RDRR+++ ++K+L Sbjct 464 ERDRRRQREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 314 to 566 Score:295 bits(754), Expect:2e-96, Method:Compositional matrix adjust., Identities:153/253(60%), Positives:195/253(77%), Gaps:11/253(4%) Query 18 QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERER 77 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++R Sbjct 314 QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQR 373 Query 78 ILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGAA 137 +LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 374 VLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNAG 433 Query 138 RRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPDI 197 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPDI Sbjct 434 RSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPDI 493 Query 198 KKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKETE-----------ERERR 246 +KL+RLE L+ +L DL++EAEK+++KRET EE++ER ++ETE +RE+ Sbjct 494 GRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDVQREKE 553 Query 247 RDRRQEKNLTKIL 259 RDRR+ + ++K+L Sbjct 554 RDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03332.4 Length: 538 Range 1: 216 to 478 Score:291 bits(746), Expect:3e-96, Method:Compositional matrix adjust., Identities:154/270(57%), Positives:198/270(73%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 216 PLRAGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWD 268 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N ++ AFPL RP WD+ T GR Sbjct 269 DCQQLLGTLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRN 328 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L+ YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 329 HLVHYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 388 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L++ +L DL++EAEK+++K R Sbjct 389 QETNVSMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRET 448 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 449 EEKEERRRTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 226 to 483 Score:291 bits(744), Expect:5e-96, Method:Compositional matrix adjust., Identities:146/258(57%), Positives:186/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 226 FQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 285 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 286 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 345 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPD Sbjct 346 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPD 405 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAEK+++K E EE ++ +++ + Sbjct 406 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDEQREK 465 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 466 ERDRRRHREMSKLLATVI 483 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 223 to 480 Score:290 bits(743), Expect:6e-96, Method:Compositional matrix adjust., Identities:145/258(56%), Positives:188/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP+E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPSESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAEK+++K E EE ++ +++ + Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDEQREK 462 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 463 ERDRRRHREMSKFLATVV 480 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 223 to 431 Score:290 bits(742), Expect:8e-96, Method:Compositional matrix adjust., Identities:134/209(64%), Positives:167/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 218 to 480 Score:290 bits(742), Expect:9e-96, Method:Compositional matrix adjust., Identities:156/270(58%), Positives:198/270(73%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR G NG LQYWPFSSADLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 218 PLRTGG-----NGQ--LQYWPFSSADLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWD 270 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+ T GR Sbjct 271 DCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEINDAFPLERPDWDYTTPAGRN 330 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L++YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 331 HLVLYRQLLLAGLQHAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 390 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L+ +L DL++EAE++++K R Sbjct 391 QETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERIRRET 450 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E+RE+ RDRR+ + ++K+L Sbjct 451 EEKEERRRAENEQREKERDRRRHREMSKLL 480 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 225 to 433 Score:289 bits(739), Expect:2e-95, Method:Compositional matrix adjust., Identities:134/209(64%), Positives:167/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 225 FQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 284 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 285 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 344 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 345 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 404 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L++ +L DL++EAEK+++K Sbjct 405 IGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Duplan murine leukemia virus] Sequence ID: P23090.3 Length: 529 Range 1: 216 to 473 Score:288 bits(736), Expect:5e-95, Method:Compositional matrix adjust., Identities:144/258(56%), Positives:187/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 216 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 275 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP W+++T EGR L++YR+ L+AGL A Sbjct 276 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWNYSTPEGRNHLVLYRQLLLAGLHNA 335 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 336 GRSPTNLAKVKRITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 395 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAEK+++K E EE ++ +++ + Sbjct 396 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDEQREK 455 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 456 ERDRRRHREMSKFLATVV 473 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 314 to 571 Score:290 bits(743), Expect:5e-95, Method:Compositional matrix adjust., Identities:146/258(57%), Positives:186/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 314 FQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 373 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 374 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 433 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPD Sbjct 434 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPD 493 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAEK+++K E EE ++ +++ + Sbjct 494 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDEQREK 553 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 554 ERDRRRHREMSKLLATVI 571 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 223 to 431 Score:288 bits(736), Expect:7e-95, Method:Compositional matrix adjust., Identities:133/209(64%), Positives:166/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEA K V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 223 to 431 Score:287 bits(735), Expect:1e-94, Method:Compositional matrix adjust., Identities:133/209(64%), Positives:166/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP W + T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 190 to 449 Score:302 bits(774), Expect:2e-94, Method:Compositional matrix adjust., Identities:154/260(59%), Positives:198/260(76%), Gaps:8/260(3%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 250 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 309 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSE 179 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP Sbjct 310 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDP 369 Query 180 GQKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKE 239 GQ A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+KRET EE++ER + Sbjct 370 GQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQR 429 Query 240 TEERERRRDRRQEKNLTKIL 259 EER+++R + K L ++ Sbjct 430 QEERDKKRHKEMTKVLATVV 449 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Moloney murine sarcoma virus] Sequence ID: P03334.3 Length: 538 Range 1: 216 to 478 Score:286 bits(732), Expect:3e-94, Method:Compositional matrix adjust., Identities:150/270(56%), Positives:197/270(72%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 216 PLRTGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWD 268 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N ++ AFPL RP W++ T GR Sbjct 269 DCQQLLGTLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRN 328 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L+ YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 329 HLVHYRQLLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 388 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L++ +L DL++EAE++++K R Sbjct 389 QETNVSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRRER 448 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++++L Sbjct 449 EEKEERRRTEDEQKEKERDRRRHREMSRLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 313 to 521 Score:288 bits(737), Expect:5e-94, Method:Compositional matrix adjust., Identities:134/209(64%), Positives:167/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 313 FQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 372 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 373 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 432 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 433 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 492 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L++ +L DL++EAEK+++K Sbjct 493 IGRKLERLEDLKNKTLGDLVREAEKIFNK 521 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 224 to 477 Score:285 bits(729), Expect:7e-94, Method:Compositional matrix adjust., Identities:146/254(57%), Positives:191/254(75%), Gaps:11/254(4%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N ++ AFPL RP WD+ T GR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETEEEKQEREKKETEERER 245 I +KL+RLE L+ +L DL++EAE++++K R EEK+ER + E E++E+ Sbjct 404 IGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERRRAEEEQKEK 463 Query 246 RRDRRQEKNLTKIL 259 RDRR+ + ++K+L Sbjct 464 ERDRRRHREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 304 to 566 Score:287 bits(735), Expect:8e-94, Method:Compositional matrix adjust., Identities:152/270(56%), Positives:197/270(72%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 304 PLRTGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWD 356 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N ++ AFPL RP W++ T GR Sbjct 357 DCQQLLGTLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRN 416 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L+ YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 417 HLVQYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 476 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ VAMSFI QSAPDI +KL+RLE L++ +L DL++EAE++++K R Sbjct 477 QETNVAMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAERIFNKRETPEEREERIRRET 536 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 537 EEKEERRRTEDEQKEKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Moloney murine sarcoma virus (strain TS110)] Sequence ID: P32594.3 Length: 468 Range 1: 216 to 433 Score:283 bits(723), Expect:9e-94, Method:Compositional matrix adjust., Identities:137/225(61%), Positives:172/225(76%), Gaps:7/225(3%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR G NG LQYWPFSS+DLYNWKSN+PSFSE+P LT L+ES++ +HQPTWD Sbjct 216 PLRTGG-----NGQ--LQYWPFSSSDLYNWKSNNPSFSEDPGKLTALIESVLITHQPTWD 268 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N ++ AFPL RP W++ T GR Sbjct 269 DCQQLLGTLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRN 328 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L+ YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 329 HLVHYRQLLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 388 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 Q+ V+MSFI QSAPDI +KL+RLE L++ +L DL++EAE++++K Sbjct 389 QETNVSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNK 433 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 312 to 569 Score:285 bits(729), Expect:8e-93, Method:Compositional matrix adjust., Identities:143/258(55%), Positives:187/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 312 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 371 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N ++ AFPL RP WD+ T GR L++YR+ L+AGL+ A Sbjct 372 RVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNA 431 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 432 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 491 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAE++++K E EE ++ E+++ + Sbjct 492 IGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERRRAEEEQKEK 551 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 552 ERDRRRHREMSKLLATVV 569 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 214 to 476 Score:296 bits(759), Expect:3e-92, Method:Compositional matrix adjust., Identities:155/270(57%), Positives:200/270(74%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLR+ G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 214 PLRSGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWD 266 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR Sbjct 267 DCQQLLGTLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRN 326 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L++YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 327 HLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 386 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L+ +L DL++EAEK+++K + Sbjct 387 QETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRET 446 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 447 EEKEERRRAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 226 to 478 Score:295 bits(756), Expect:6e-92, Method:Compositional matrix adjust., Identities:153/253(60%), Positives:195/253(77%), Gaps:11/253(4%) Query 18 QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERER 77 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++R Sbjct 226 QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQR 285 Query 78 ILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGAA 137 +LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 286 VLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNAG 345 Query 138 RRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPDI 197 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPDI Sbjct 346 RSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPDI 405 Query 198 KKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKETE-----------ERERR 246 +KL+RLE L+ +L DL++EAEK+++KRET EE++ER ++ETE +RE+ Sbjct 406 GRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDVQREKE 465 Query 247 RDRRQEKNLTKIL 259 RDRR+ + ++K+L Sbjct 466 RDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 224 to 477 Score:292 bits(748), Expect:6e-91, Method:Compositional matrix adjust., Identities:149/254(59%), Positives:194/254(76%), Gaps:11/254(4%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+MSFI QSAPD Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETEEEKQEREKKETEERER 245 I +KL+RLE L+ +L+DL++EAEK+++K R EE +ER + E E+RE+ Sbjct 404 IGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERRRAEDEQREK 463 Query 246 RRDRRQEKNLTKIL 259 RDRR+++ ++K+L Sbjct 464 ERDRRRQREMSKLL 477 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 224 to 477 Score:292 bits(748), Expect:8e-91, Method:Compositional matrix adjust., Identities:151/254(59%), Positives:196/254(77%), Gaps:11/254(4%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAP Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPA 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKET-----------EERER 245 I +KL+RLE L+ +L DL++EAEK+++KRET EE++ER ++ET E+RE+ Sbjct 404 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAGDEQREK 463 Query 246 RRDRRQEKNLTKIL 259 RDRR+++ ++K+L Sbjct 464 ERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 226 to 483 Score:291 bits(745), Expect:2e-90, Method:Compositional matrix adjust., Identities:146/258(57%), Positives:186/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 226 FQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 285 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 286 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 345 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAMSFI QSAPD Sbjct 346 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQSAPD 405 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAEK+++K E EE ++ +++ + Sbjct 406 IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDEQREK 465 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 466 ERDRRRHREMSKLLATVI 483 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 216 to 478 Score:291 bits(745), Expect:2e-90, Method:Compositional matrix adjust., Identities:154/270(57%), Positives:198/270(73%), Gaps:18/270(6%) Query 1 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 60 PLRA G NG LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWD Sbjct 216 PLRAGG-----NGQ--LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWD 268 Query 61 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 120 DCQQLL L T EE++R+LLEARK V G +G PTQL N ++ AFPL RP WD+ T GR Sbjct 269 DCQQLLGTLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRN 328 Query 121 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 180 L+ YR+ L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP G Sbjct 329 HLVHYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPG 388 Query 181 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHK-----------RETE 229 Q+ V+MSFI QSAPDI +KL+RLE L++ +L DL++EAEK+++K R Sbjct 389 QETNVSMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRET 448 Query 230 EEKQEREKKETEERERRRDRRQEKNLTKIL 259 EEK+ER + E E++E+ RDRR+ + ++K+L Sbjct 449 EEKEERRRTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 223 to 431 Score:289 bits(740), Expect:8e-90, Method:Compositional matrix adjust., Identities:134/209(64%), Positives:167/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 225 to 433 Score:288 bits(737), Expect:2e-89, Method:Compositional matrix adjust., Identities:134/209(64%), Positives:167/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 225 FQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQ 284 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ L+AGL+ A Sbjct 285 RVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQLLLAGLQNA 344 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 345 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 404 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L++ +L DL++EAEK+++K Sbjct 405 IGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 223 to 431 Score:286 bits(733), Expect:7e-89, Method:Compositional matrix adjust., Identities:133/209(64%), Positives:166/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEA K V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 223 to 431 Score:286 bits(733), Expect:7e-89, Method:Compositional matrix adjust., Identities:133/209(64%), Positives:166/209(79%), Gaps:0/209(0%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 223 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQ 282 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N +N AFPL RP W + T EGR L++YR+ L+AGL+ A Sbjct 283 RVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQLLLAGLQNA 342 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 343 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 402 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK 225 I +KL+RLE L+ +L DL++EAEK+++K Sbjct 403 IGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 224 to 481 Score:285 bits(728), Expect:3e-88, Method:Compositional matrix adjust., Identities:143/258(55%), Positives:187/258(72%), Gaps:15/258(5%) Query 17 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 76 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 224 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 283 Query 77 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 136 R+LLEARK V G +G PTQL N ++ AFPL RP WD+ T GR L++YR+ L+AGL+ A Sbjct 284 RVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNA 343 Query 137 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 196 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ V+MSFI QSAPD Sbjct 344 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPD 403 Query 197 IKKKLQRLEGLQDHSLQDLIKEAEKVYHK---------------RETEEEKQEREKKETE 241 I +KL+RLE L+ +L DL++EAE++++K E EE ++ E+++ + Sbjct 404 IGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERRRAEEEQKEK 463 Query 242 ERERRRDRRQEKNLTKIL 259 ER+RRR R K L ++ Sbjct 464 ERDRRRHREMSKLLATVV 481 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 190 to 348 Score:201 bits(512), Expect:1e-63, Method:Compositional matrix adjust., Identities:96/159(60%), Positives:122/159(76%), Gaps:8/159(5%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 250 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 309 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPS 158 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ Sbjct 310 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPA 348 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 267 to 425 Score:202 bits(513), Expect:9e-63, Method:Compositional matrix adjust., Identities:96/159(60%), Positives:122/159(76%), Gaps:8/159(5%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 267 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 326 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 327 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 386 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPS 158 E L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ Sbjct 387 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPA 425 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 190 to 340 Score:195 bits(495), Expect:4e-61, Method:Compositional matrix adjust., Identities:92/151(61%), Positives:117/151(77%), Gaps:8/151(5%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 250 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 309 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVL 150 E L +YR+ L+AGL+GAARRPTNLA+V++V+ Sbjct 310 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVV 340 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 264 to 414 Score:195 bits(495), Expect:3e-60, Method:Compositional matrix adjust., Identities:92/151(61%), Positives:117/151(77%), Gaps:8/151(5%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 264 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 323 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGR 119 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GR Sbjct 324 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGR 383 Query 120 ERLLVYRRTLVAGLKGAARRPTNLAKVREVL 150 E L +YR+ L+AGL+GAARRPTNLA+V++V+ Sbjct 384 EHLRLYRQLLLAGLRGAARRPTNLAQVKQVV 414 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 190 to 297 Score:139 bits(350), Expect:6e-40, Method:Compositional matrix adjust., Identities:65/108(60%), Positives:82/108(75%), Gaps:8/108(7%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 190 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 249 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLN 107 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL Sbjct 250 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 297 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 264 to 371 Score:139 bits(350), Expect:3e-39, Method:Compositional matrix adjust., Identities:65/108(60%), Positives:82/108(75%), Gaps:8/108(7%) Query 8 PAEPNGLVPL--------QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTW 59 PAE + +PL QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTW Sbjct 264 PAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTW 323 Query 60 DDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLN 107 DDCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL Sbjct 324 DDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 371 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 224 to 310 Score:120 bits(301), Expect:1e-32, Method:Compositional matrix adjust., Identities:54/87(62%), Positives:68/87(78%), Gaps:0/87(0%) Query 31 KSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERERILLEARKNVLGVN 90 K+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++R+LLEARK V G + Sbjct 224 KNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGND 283 Query 91 GAPTQLENLINEAFPLNRPQWDHNTAE 117 G PTQ+ N +N AFPL RP WD+ T E Sbjct 284 GRPTQMPNEVNAAFPLERPDWDYTTPE 310 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Avian spleen necrosis virus] Sequence ID: P03342.1 Length: 313 Range 1: 195 to 310 Score:108 bits(269), Expect:5e-28, Method:Compositional matrix adjust., Identities:54/116(47%), Positives:71/116(61%), Gaps:15/116(12%) Query 11 PNGLVPLQ--------------YWPFSSADLYNWKSNHPS-FSENPTGLTGLLESLMFSH 55 P+G+ PL+ Y PF+++DLYNWK+ +PS FS+ P + LLES+ ++H Sbjct 195 PSGMYPLRETGERDMTGRPMRTYVPFTTSDLYNWKNQNPSSFSQAPDQVISLLESVFYTH 254 Query 56 QPTWDDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQW 111 QPTWDDCQQLL+ LFTTEERER+ E+R+ V G E I FP RP W Sbjct 255 QPTWDDCQQLLRTLFTTEERERVRTESRREVRNDQGVQVTDEREIEAQFPATRPDW 310