BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: seq.fasta 23,859 sequences; 7,671,388 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subun... 860 0.0 sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|Q21KA8|CLPX_SACD2 ATP-dependent Clp protease ATP-binding subun... 645 0.0 sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subun... 619 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subun... 612 0.0 sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subun... 588 0.0 sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subun... 587 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|Q21H71|HSLU_SACD2 ATP-dependent protease ATPase subunit HslU O... 99.8 5e-23 sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU O... 97.1 4e-22 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 2e-21 sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU O... 93.6 6e-21 sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU O... 93.6 7e-21 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU O... 93.2 9e-21 sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=E... 46.2 2e-05 tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia... 46.2 2e-05 tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease... 45.8 2e-05 tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease... 45.4 3e-05 sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex s... 43.5 9e-05 >sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q21KA8|CLPX_SACD2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=clpX PE=3 SV=1 Length=431 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/426 (76%), Positives = 367/426 (86%), Gaps = 6/426 (1%) Query 1 MTDKRKDG--SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPH 58 M+D D +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREEI+E Sbjct 1 MSDHTGDNEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEIQESTTE 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGD---TSNGVELGKSNI 115 LPTP EI LD+YVIGQ+QAKKVLAVAVYNHYKRLR GD + + VELGKSNI Sbjct 61 STGDKLPTPQEISETLDEYVIGQKQAKKVLAVAVYNHYKRLRVGDKKKSKDDVELGKSNI 120 Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GPTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+K Sbjct 121 LLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEK 180 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 AQ+GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEF Sbjct 181 AQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEF 240 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 LQVDT ILFICGGAFAGLDKVI R E G GIGF A VK+K + GE L ++EPEDL Sbjct 241 LQVDTGNILFICGGAFAGLDKVIRDRSEKG-GIGFSAEVKSKDSGKNVGETLRELEPEDL 299 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 +++GLIPEF+GRLPV+ATL+EL ++AL++ILKEPKN+L KQY LF +EG +++FRD+AL Sbjct 300 VRYGLIPEFVGRLPVIATLDELDQDALVRILKEPKNSLVKQYSKLFEMEGSEVDFRDDAL 359 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 +A+A KAM RKTGARGLRSI+E LLDTMY +PS E+V KVV+DESVI G+S PLL+YG Sbjct 360 EAVANKAMERKTGARGLRSIMENVLLDTMYKIPSEENVVKVVVDESVIKGESAPLLVYGN 419 Query 416 PEAQQA 421 +A+ A Sbjct 420 NDAETA 425 >sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpX PE=3 SV=1 Length=422 Score = 619 bits (1597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 353/417 (85%), Gaps = 5/417 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE-VAPHR 59 MTDK K G KLLYCSFCGKSQHEVRKLIAGPSV+ICDEC++LCNDIIR+EI E V Sbjct 1 MTDK-KAGGEKLLYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEG 59 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLI 118 R+ LPTP EI L+ YVIGQ QAK+ L+VAVYNHYKRLR+ VEL KSNILLI Sbjct 60 TRTTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLI 119 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV KAQ Sbjct 120 GPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQH 179 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHP Q+F+Q+ Sbjct 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQI 239 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI +R E GIGFGA +K++ K + E QVEPEDLIKF Sbjct 240 DTTNILFICGGAFDGLEKVIRNRTEK-IGIGFGAEIKSREGK-NVSESFRQVEPEDLIKF 297 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL EL EEALIQIL EPKNAL KQYQ LF++EGVDLE R AL A+ Sbjct 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 A+KA+ RKTGARGLRSI+E+ALLD MYDLP++E VEKVV+DE I+ ++PLL+Y + Sbjct 358 ARKAIRRKTGARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAE 414 >sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 >sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=clpX PE=3 SV=1 Length=424 Score = 588 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 289/407 (71%), Positives = 341/407 (84%), Gaps = 3/407 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SGIKARDGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + SN +EL KSNILL+GPTG GKT L Sbjct 70 EIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRK+DNPSITRDVSGEGVQQALLK++EGT+A+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGL+++IS R E S IGF ATVKA D+ GE+ +EPEDLIKFGLIPEFIGRL Sbjct 250 GAFAGLERIISGRGEKTS-IGFSATVKA-PDERCVGEIFRDLEPEDLIKFGLIPEFIGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 P+VATL +L AL+QIL +PKNAL KQYQ LF +E V+L F ++AL IAKKA+ RKTG Sbjct 308 PIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 ARGLRSI+E LL+TM++LP++E V+KVVI V+DG++ PL IY + Sbjct 368 ARGLRSIMEKILLETMFELPALEGVQKVVISSDVVDGKAHPLYIYSE 414 >sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=clpX PE=3 SV=1 Length=411 Score = 587 bits (1512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/417 (70%), Positives = 342/417 (82%), Gaps = 10/417 (2%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIRE----EIKEVA 56 MTDK KD L+CSFCGK + EV +LIAG YIC+EC++LC+ ++ E ++E A Sbjct 1 MTDKDKD-----LHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESA 55 Query 57 PHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNIL 116 E LPTPHEIR HLDDYVIGQ+ AKKVL+VAVYNHYKRLR SN VELGKSNIL Sbjct 56 VENEEK-LPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNIL 114 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLA+TLAR L+VPF MADATTLTEAGYVGEDVEN++QKLLQ C+YD +KA Sbjct 115 LIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKA 174 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 ++GI+YIDEIDKISRKS+ SITRDVSGEGVQQALLKLIEGT+A++PPQGGRKHPQQE + Sbjct 175 EKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMV 234 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 ++DTSKILFICGGAFAGLDK+I R +T + IGF A V+ + S EL QVEP+DL+ Sbjct 235 KLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLM 294 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLP++A L+EL E+ALIQIL +PKNAL KQYQALF LE V+L+F EAL Sbjct 295 KFGLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALK 354 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+AKKA+ RKTGARGLRSIVEA LLDTMYDLPS+E+++KV++DES I P L Y Sbjct 355 AMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAPKLEY 411 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|Q21H71|HSLU_SACD2 ATP-dependent protease ATPase subunit HslU OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=hslU PE=3 SV=1 Length=438 Score = 99.8 bits (247), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 48/101 (48%), Positives = 69/101 (68%), Gaps = 1/101 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ+ AKK +A+A+ N ++R++ D E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDQHIVGQQDAKKAVAIALRNRWRRMQ-LDAKLRTEITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 T +A LA+L + PF +AT TE GYVG DVE+II+ L+ Sbjct 64 TEIARRLAKLTNAPFIKVEATKFTEVGYVGRDVESIIRDLV 104 Score = 90.1 bits (222), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 104/235 (44%), Gaps = 61/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK++++ N DVS EGVQ+ LL LIEG + KH Sbjct 245 QNGIVFIDEIDKVAKREGNSGA--DVSREGVQRDLLPLIEGCTVST------KHGM---- 292 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 + T ILFI GAF V SD Sbjct 293 -IKTDHILFITSGAFH---------------------VSKPSD----------------- 313 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+Q+Q+L EG +EF + + Sbjct 314 ---LIPELQGRLPIRVELQALTPDDFERILTEPTASLTEQHQSLLATEGTQIEFTADGIR 370 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 IA+ A GAR L +++E L + + + E V ID + +DGQ Sbjct 371 KIAEIAYQVNKSTENIGARRLHTVLEKLLEEISF--AAGESDNNVTIDAAFVDGQ 423 >sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=hslU PE=3 SV=1 Length=436 Score = 97.1 bits (240), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 111/237 (47%), Gaps = 65/237 (27%) Query 157 DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE 216 D + IIQ+ L+ + D GIV+IDEIDKI+ + S VS EGVQ+ LL L+E Sbjct 228 DQDQIIQEALRVAEND------GIVFIDEIDKIATRDGGASAA--VSREGVQRDLLPLVE 279 Query 217 GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA 276 GT A ++ Q+ T ILFI GAF V Sbjct 280 GTTIAT-----------KYGQIKTDHILFIASGAFH---------------------VSK 307 Query 277 KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQ 336 SD L+PE GRLP+ LN L+ E L +IL EP+ +L KQ Sbjct 308 PSD--------------------LLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQ 347 Query 337 YQALFNLEGVDLEFRDEALDAIAKKAM---AR--KTGARGLRSIVEAALLDTMYDLP 388 Y AL E V LE D+A+DA+A A+ AR GAR L++++E L + + P Sbjct 348 YIALMATEEVHLEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAP 404 Score = 90.1 bits (222), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (64%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P E + LD ++IGQ AK+ +A+A+ N ++R + D E+ NIL+IGPTG GK Sbjct 6 SPRETVSELDRFIIGQSDAKRSVAIALRNRWRR-QQLDGPMRDEVMPKNILMIGPTGVGK 64 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 65 TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVE 106 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU OS=Escherichia coli (strain K12) OX=83333 GN=hslU PE=1 SV=1 Length=443 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ+ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF + SD Sbjct 297 -VKTDHILFIASGAF---------------------QIAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + YD Sbjct 375 RIAEAAWQVNESTENIGARRLHTVLERLMEEISYD 409 >sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU PE=3 SV=1 Length=442 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ +AKK +A+A+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LARL + PF +AT TE GYVG DV+ II+ L Sbjct 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDL 103 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/235 (31%), Positives = 108/235 (46%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDK++ +S+ DVS +GVQ+ LL L+EGT + ++ Sbjct 248 QNGIVFLDEIDKVASRSEGQGA--DVSRQGVQRDLLPLVEGTTIST-----------KYG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 + T ILFI GAF H LA+ P DLI Sbjct 295 MIKTDHILFIASGAF--------H--------------------------LAK--PSDLI 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS E IL + L +QYQAL +GV LEF D+ + Sbjct 319 -----PELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLATDGVTLEFTDDGIR 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + ++ + ++K+++D +D + Sbjct 374 RLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRI-GLDKLLVDAPYVDAR 427 >sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 >sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=hslU PE=1 SV=1 Length=444 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 93/207 (45%), Gaps = 61/207 (29%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EG+ + KH Sbjct 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 298 -VKTDHILFIASGAF-------------------------------------QVARPSDL 319 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L LS +IL EP +LT+QY+AL EGV++ F +A+ Sbjct 320 I-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 374 Query 356 DAIAKKAM-----ARKTGARGLRSIVE 377 IA+ A GAR L +++E Sbjct 375 KKIAEAAFRVNEKTENIGARRLHTVME 401 >sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain K12) OX=83333 GN=ftsH PE=1 SV=1 Length=644 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia pestis OX=632 GN=YPO3902 PE=3 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 >tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease FtsH OS=Yersinia pestis OX=632 GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease FtsH OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ftsH PE=3 SV=1 Length=715 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 192 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 245 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 246 KNAPCIIFIDEIDAVGR 262 >sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex subunit RuvB OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ruvB PE=3 SV=1 Length=361 Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 28/132 (21%) Query 63 ALPTPHE----IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 A+P P++ +R + D IGQE A+ L + + + + + ++L + Sbjct 12 AVPLPNDPDRSLRPQVLDDFIGQEAARANLKIFI----------EAAKARQEALDHVLFV 61 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GP G GKT L++ +A+ L V F + +AG + + N+ +R Sbjct 62 GPPGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNL--------------EER 107 Query 179 GIVYIDEIDKIS 190 +++IDEI ++S Sbjct 108 DVLFIDEIHRLS 119 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1738625156 Database: seq.fasta Posted date: Mar 3, 2025 9:11 AM Number of letters in database: 7,671,388 Number of sequences in database: 23,859 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40