LOCUS       NC_004113            2593857 bp    DNA     circular CON 05-SEP-2013
DEFINITION  Thermosynechococcus elongatus BP-1 chromosome, complete genome.
ACCESSION   NC_004113
VERSION     NC_004113.1  GI:22297544
DBLINK      Project: 57907
            BioProject: PRJNA57907
KEYWORDS    .
SOURCE      Thermosynechococcus elongatus BP-1
  ORGANISM  Thermosynechococcus elongatus BP-1
            Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales;
            Thermosynechococcus.
REFERENCE   1  (bases 1 to 2593857)
  AUTHORS   Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S.,
            Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y.,
            Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N.,
            Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S.
  TITLE     Complete genome structure of the thermophilic cyanobacterium
            Thermosynechococcus elongatus BP-1
  JOURNAL   DNA Res. 9 (4), 123-130 (2002)
   PUBMED   12240834
REFERENCE   2  (bases 1 to 2593857)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2593857)
  AUTHORS   Kaneko,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2002) The First Laboratory for Plant Gene
            Research, Kazusa DNA Research Institute, 2-6-7, Kazusa-kamatari,
            Kisarazu, Chiba 292-0812, Japan
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from BA000039.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2593857
                     /organism="Thermosynechococcus elongatus BP-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:197221"
     gene            129..1142
                     /locus_tag="tlr0001"
                     /db_xref="GeneID:1010616"
     CDS             129..1142
                     /locus_tag="tlr0001"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="NP_680792.1"
                     /db_xref="GI:22297545"
                     /db_xref="GeneID:1010616"
                     /translation="MKAVAIAEFGEPDVLVLRQVPEPQIEAADEVKIQLRAASVNPID
                     TKLRQRGTFFPDRRPAILGCDGAGVVVAVGAAVRRFRVGDEVYFCYGGLGDRGGCYAE
                     YAVVPEAAVAHKPKTLSFIQAAALPLAVITAWEALGDRGAVPPLNVLSTAKTVLIHAG
                     AGGVGHLAIQLARRAGAQVATTISSPAKAQFTEALGATLAINYTTTDWVQAVLDWTGG
                     KGVDLALDTVGGATFAETFKAVRPYGTLATLLEPAVDTPWKIARQRNLLIQLTLMLTP
                     QLLGLREALAHQGQILEQVATLVDRGELRVVVDKTFPLGAAADAHRYLSQRLVQGKVV
                     LIP"
     misc_feature    129..1139
                     /locus_tag="tlr0001"
                     /note="NADPH:quinone reductase and related Zn-dependent
                     oxidoreductases [Energy production and conversion /
                     General function prediction only]; Region: Qor; COG0604"
                     /db_xref="CDD:223677"
     misc_feature    129..1133
                     /locus_tag="tlr0001"
                     /note="Medium chain dehydrogenases/reductase
                     (MDR)/zinc-dependent alcohol dehydrogenase-like family;
                     Region: MDR6; cd08272"
                     /db_xref="CDD:176233"
     misc_feature    order(249..257,264..266,510..512,522..524,603..614,
                     618..623,675..680,690..692,732..734,807..812,816..818,
                     873..878,945..953)
                     /locus_tag="tlr0001"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176233"
     gene            complement(1351..2331)
                     /locus_tag="tll0002"
                     /db_xref="GeneID:1010617"
     CDS             complement(1351..2331)
                     /locus_tag="tll0002"
                     /codon_start=1
                     /transl_table=11
                     /product="serine proteinase"
                     /protein_id="NP_680793.1"
                     /db_xref="GI:22297546"
                     /db_xref="GeneID:1010617"
                     /translation="MVAEAGPAVVSIDTLRLDRGSEDPFLAPFPVPDVPLRQGQGSGF
                     IFTPDGKIMTNAHVVEGASAVRVTLPDGRQYDGKVLGADSLTDVAVVQINAKNLPTVQ
                     LGNSDTLRPGEWAIAIGNPLGLSNTVTAGIISAMGRASSEIGAADKRVSFIQTDAAIN
                     PGNSGGPLLNAAGQVVGVNTAVISQAQGLGFAIPINTAYGIAEQIITTGRAQHLYLGI
                     RMVPLTPELALQIREQQPNWTLNRTQGTLIIGVAPNSPAAKAGLQAGDWIAKVNDINQ
                     PTPQQVQSVVEQTKLGEKITLEIERGDRRQTLRLKPEPMPPEWYPSAQPE"
     misc_feature    complement(1798..2211)
                     /locus_tag="tll0002"
                     /note="Trypsin-like peptidase domain; Region: Trypsin_2;
                     pfam13365"
                     /db_xref="CDD:222077"
     misc_feature    complement(1402..1689)
                     /locus_tag="tll0002"
                     /note="PDZ domain of tryspin-like serine proteases, such
                     as DegP/HtrA, which are oligomeric proteins involved in
                     heat-shock response, chaperone function, and apoptosis.
                     May be responsible for substrate recognition and/or
                     binding, as most PDZ domains bind...; Region:
                     PDZ_serine_protease; cd00987"
                     /db_xref="CDD:238487"
     misc_feature    complement(order(1483..1488,1495..1500,1672..1674,
                     1678..1689))
                     /locus_tag="tll0002"
                     /note="protein binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238487"
     gene            complement(2402..2578)
                     /locus_tag="tsl0003"
                     /db_xref="GeneID:1010618"
     CDS             complement(2402..2578)
                     /locus_tag="tsl0003"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680794.1"
                     /db_xref="GI:22297547"
                     /db_xref="GeneID:1010618"
                     /translation="MAADVRQNHYFQNKARVDLMPSWVEYGPQAAEFPWDGDRPWRPN
                     GLSIAFARSHPLHP"
     gene            2577..2762
                     /locus_tag="tsr0004"
                     /db_xref="GeneID:1010619"
     CDS             2577..2762
                     /locus_tag="tsr0004"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680795.1"
                     /db_xref="GI:22297548"
                     /db_xref="GeneID:1010619"
                     /translation="MLTVISYLEQPMTFDSFFGPVTLQPGRNENVDERRWRNCKTHNA
                     DLQALMKKGLIVVEELG"
     gene            2816..4534
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /db_xref="GeneID:1010622"
     CDS             2816..4534
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /EC_number="3.5.1.5"
                     /note="ureases catalyze the hydrolysis of urea into
                     ammonia and carbon dioxide; in Helicobacter pylori the
                     ammonia released plays a key role in bacterial survival by
                     neutralizing acids when colonizing the gastric mucosa; the
                     holoenzyme is composed of 3 ureC (alpha) and 3 ureAB
                     (gamma/beta) subunits"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="NP_680796.1"
                     /db_xref="GI:22297549"
                     /db_xref="GeneID:1010622"
                     /translation="MSYRIDRQTYAETYGPTVGDRLRLADTDLIIEIEHDYTHYGDEV
                     KFGGGKVIRDGMGQSPIANAEGAVDVVITNAVILDWWGVVKADVGIKDGKIYKIGKAG
                     NPYTQEGVDIIIGPGTEAIAGEGMILTAGGIDAHIHFICPQQIATAIAAGITTMIGGG
                     TGPATGTNATTCTPGPWNIYRMLQAADAFPVNLGFLGKGNSSQPQGLIEQVQAGVVGL
                     KLHEDWGSTPNAIDTCLSVAEDYDIQVAIHTDTLNESGFVEDTIAAFKNRTIHAYHTE
                     GAGGGHAPDIIKLCGQANVLPSSTNPTRPYTVNTLDEHLDMLMVCHHLDPSIPEDVAF
                     AESRIRRETIAAEDILHDLGAFSIISSDSQAMGRVGESIIRTWQTAHKMKVQRGHLRD
                     PQRPGVDHDNFRARRYVAKYTINPAITHGIAEYVGSVEVGKIADLCLWKPAFFGVKPE
                     LVIKGGVIAYAQMGDANASIPTPQPVHMQPMFASYGGCRTTTSVTFMSQAGIANNIPE
                     QLGLQKTVLPVGHIRQLRKADLKLNDYLPHIEVDPETYEVRADGELLTCEPATVLPLA
                     QRYFLF"
     misc_feature    2819..4531
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /note="urease subunit alpha; Reviewed; Region: ureC;
                     PRK13207"
                     /db_xref="CDD:237305"
     misc_feature    2825..4528
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /note="Urease alpha-subunit; Urease is a nickel-dependent
                     metalloenzyme that catalyzes the hydrolysis of urea to
                     form ammonia and carbon dioxide. Nickel-dependent ureases
                     are found in bacteria, fungi and plants. Their primary
                     role is to allow the use of...; Region: Urease_alpha;
                     cd00375"
                     /db_xref="CDD:238221"
     misc_feature    order(2825..2830,2834..2836,2855..2857,2873..2878,
                     2882..2884,2888..2890,2933..2944,2948..2950,2966..2968,
                     2975..2983,3125..3139,3188..3190,4142..4144,4208..4225,
                     4229..4237,4250..4252,4514..4528)
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /note="subunit interactions [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238221"
     misc_feature    order(3221..3223,3227..3229,3320..3322,3470..3472,
                     3476..3478,3557..3559,3635..3637,3650..3652,3779..3781,
                     3899..3901,3908..3913)
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /note="active site"
                     /db_xref="CDD:238221"
     misc_feature    3764..3814
                     /gene="ureC"
                     /locus_tag="tlr0005"
                     /note="flap region; other site"
                     /db_xref="CDD:238221"
     gene            4538..5032
                     /locus_tag="tlr0006"
                     /db_xref="GeneID:1010623"
     CDS             4538..5032
                     /locus_tag="tlr0006"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680797.1"
                     /db_xref="GI:22297550"
                     /db_xref="GeneID:1010623"
                     /translation="MTDAVSALFQQGQQAFERGNYQQSITLLAQAVALAEGNTTQSGE
                     ISLWLVTAYSAAGDQEAAVSLCRQLQRHPDHQTRQESRRLLAILEAPQLKRRPEWCSE
                     IPDLSHLGDRAYTSPYRHSRKRPSAPTPKPQEPPPPATPLPNAFIWIALTGLGVATLL
                     AAWL"
     misc_feature    4556..>4762
                     /locus_tag="tlr0006"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cl02429"
                     /db_xref="CDD:243034"
     misc_feature    order(4556..4558,4562..4567,4574..4579,4685..4690,
                     4697..4702)
                     /locus_tag="tlr0006"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     misc_feature    order(4571..4573,4607..4609,4619..4621,4628..4630,
                     4685..4687,4721..4723,4733..4735)
                     /locus_tag="tlr0006"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     gene            complement(5430..7640)
                     /locus_tag="tll0007"
                     /db_xref="GeneID:1010624"
     CDS             complement(5430..7640)
                     /locus_tag="tll0007"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase"
                     /protein_id="NP_680798.1"
                     /db_xref="GI:22297551"
                     /db_xref="GeneID:1010624"
                     /translation="MSHEPPRPASPRQWVAPWVWGFFVFSILLLFGVLLATTWRPTLF
                     PIDLVNPDQLRPLPDLLQMPEDELSVWWPLVLVGMVAIALNFIPSNNVSRLIIRFIVI
                     LFGCRYLVWRGWVTLNDAHWLSFAASLGFYGLEVLSFFTYLLYFYQTAWLTTAWRSQQ
                     ANAYQQAVLRGEYCPSVDIFIPTYNEPPYILRRTIVACQAIHYRNKSIYVLDDGRRSE
                     IADLCAHLGVNYLTRPTNEHRKAGNLNHALKHTTGELIAVFDADFIPFQNFLTRTVGF
                     FQDDQVSMVQTPQHFFNPDYHSQNLGIEFMMPGDMEYFFGFIQPGRDFGNAIICCGTS
                     YVVRRRALEAIGGYYTRCVVEDFQTGTKMQIAGYRLVYLNEILSMGESPRNFQDYLEQ
                     RLRWLQGNMQIYFCGDDLPIWSKLSWFQRSCHLSLLLHNINPFIRTCFLIGPFLSLMT
                     GISLTVATLSEYLFYALPYTLLMIATFSWATEGRYFSLWGEVYEVTFAFPGMVQLIKI
                     LRNPFGKIGSIVTNKGTLSNRKRLNLRYTWPLVAFLIAVSVGVFIRYGGYWLHIWPPM
                     EYERSGLEVMLAWTLYNAFIALIAVLSSIDQPSRRQSDRFPVCTVCRFQLGDQTYWGY
                     TRDVSETGAALLLTAGRFIEAQRDTVGTLTFLEQDFSVTAAVVRSRTEEEQCCLYLRF
                     LEVSDEAQRGLVQLLYGGLTWWHKPKAPNGLDAFWPMLIRLFDFRSLFSLYSNH"
     misc_feature    complement(5451..7442)
                     /locus_tag="tll0007"
                     /note="cellulose synthase catalytic subunit (UDP-forming);
                     Region: CelA; TIGR03030"
                     /db_xref="CDD:234095"
     misc_feature    complement(6432..7118)
                     /locus_tag="tll0007"
                     /note="CESA_CelA_like are involved in the elongation of
                     the glucan chain of cellulose; Region: CESA_CelA_like;
                     cd06421"
                     /db_xref="CDD:133043"
     misc_feature    complement(6855..6863)
                     /locus_tag="tll0007"
                     /note="DXD motif; other site"
                     /db_xref="CDD:133043"
     misc_feature    complement(5544..5843)
                     /locus_tag="tll0007"
                     /note="PilZ domain; Region: PilZ; pfam07238"
                     /db_xref="CDD:219344"
     gene            complement(7667..8746)
                     /gene="ycf81"
                     /locus_tag="tll0008"
                     /db_xref="GeneID:1010625"
     CDS             complement(7667..8746)
                     /gene="ycf81"
                     /locus_tag="tll0008"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680799.1"
                     /db_xref="GI:22297552"
                     /db_xref="GeneID:1010625"
                     /translation="MLDTILLLIIVVMGIAVGFNSIDLLPETVLAQVANVRGLQWVMA
                     AFGAIVGIALGLLLQSLYHRLERSIRQLPPETLLSRAVGLVVGLLLANLMLAPIFLLP
                     IPKDFSFIKPLIAVLTSILFAYSGTTLADSHGPALLRLINPNAVASSLLAEGMLKPAR
                     AKVLDTSCIIDGRIEALLNLGVLEGQIIVPQFVLQELQLIADAGNEQKRMRGRRGLDV
                     LNRLQASLGDRIVIHSADYPELTTVDAKLVRLCQEINGTLVTNDLNLNKVARFQKVDV
                     FNVNELAQALRPIYLPGDTLELKILKEGKEPAQGVGYLEDGTMVVVEEGVDHIGDQLS
                     VVVTSALQTSAGRMIFARLQMPTMA"
     misc_feature    complement(7685..8746)
                     /gene="ycf81"
                     /locus_tag="tll0008"
                     /note="Integral membrane protein (PIN domain superfamily)
                     [General function prediction only]; Region: COG4956"
                     /db_xref="CDD:227292"
     misc_feature    complement(7883..8263)
                     /gene="ycf81"
                     /locus_tag="tll0008"
                     /note="PIN domain of Thermus Thermophilus Hb8,
                     uncharacterized Bacillus subtilis YacL, and other
                     bacterial homologs; Region: PIN_YacL; cd09877"
                     /db_xref="CDD:189047"
     misc_feature    complement(order(7961..7963,8015..8017,8159..8161,
                     8252..8254))
                     /gene="ycf81"
                     /locus_tag="tll0008"
                     /note="putative active site [active]"
                     /db_xref="CDD:189047"
     gene            complement(8796..9758)
                     /locus_tag="tll0009"
                     /db_xref="GeneID:1010626"
     CDS             complement(8796..9758)
                     /locus_tag="tll0009"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680800.1"
                     /db_xref="GI:22297553"
                     /db_xref="GeneID:1010626"
                     /translation="MATAETAPIAELVHVTGDRLRLRIQELKTDVGFRDSLTAYLKTL
                     RGIQSVHVNPLAASITIEYHREQITPLQLLAAIQFWGEVQIIGQGNRGLQNLTRAFDL
                     EPEEVGNKLTAMGGFLMGGYLGDILGGMVGGTAGGLLMGPGGAVMGVQVGTFVGGVIG
                     ARLGMEATEQMIQLQFTALEETPERIAKALEIHSGDKIGGAAGELAGGLAGQVVLGPV
                     GETLGRVVGNMVGSQLGEDLGRQLAEPSPEGPPPPSLHFFLEWWVKTSQTFAKETLLA
                     TLGGIVARGILGPQAEAAGIRAGSRMSRHLDRQQSNTAAKEKKV"
     gene            9717..10886
                     /locus_tag="tlr0010"
                     /db_xref="GeneID:1010629"
     CDS             9717..10886
                     /locus_tag="tlr0010"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="NP_680801.1"
                     /db_xref="GI:22297554"
                     /db_xref="GeneID:1010629"
                     /translation="MHELGNRRSFSSGHGNPPQSALVAVVARTPKEGEISVKMLRESH
                     TELMTMTATVKVEHLRKSYGAITAVADVSLTAHQGEIFGVLGPNGSGKTTTLRCLCTL
                     SRPDAGLLEVCGFSVLHQPHLVRQKLGYVAQEVALDKILTGQEFLELQAALYHIPRAL
                     IPERIEAVLARLDLLQWRDRQCGTYSGGIRKRFDLAAGLLHQPQVLVLDEPTVGLDIE
                     SRQVIWDVLRDLKAQGLTIILTSHYLEEVDLLSDRLVILDKGRVIASGSPEELKANIG
                     GDRVTLRVREFTPRQEAQRAQALLSQLTCVKSALINANQGNSLNLVVTDVTVAIAAIK
                     RALEEAGLPLFSLAQSRPSLDDVYLAATGQTLLDADLAAAAQRDSKQLKKEVMQR"
     misc_feature    9864..10790
                     /locus_tag="tlr0010"
                     /note="ABC-type multidrug transport system, ATPase
                     component [Defense mechanisms]; Region: CcmA; COG1131"
                     /db_xref="CDD:224054"
     misc_feature    9876..10532
                     /locus_tag="tlr0010"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:247755"
     misc_feature    9972..9995
                     /locus_tag="tlr0010"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(9981..9986,9990..9998,10113..10115,10341..10346,
                     10440..10442)
                     /locus_tag="tlr0010"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    10104..10115
                     /locus_tag="tlr0010"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    10269..10298
                     /locus_tag="tlr0010"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    10329..10346
                     /locus_tag="tlr0010"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    10353..10364
                     /locus_tag="tlr0010"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    10428..10448
                     /locus_tag="tlr0010"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            10886..11296
                     /locus_tag="tlr0011"
                     /db_xref="GeneID:1010630"
     CDS             10886..11296
                     /locus_tag="tlr0011"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680802.1"
                     /db_xref="GI:22297555"
                     /db_xref="GeneID:1010630"
                     /translation="MGQPILWVHGDCLDPNAPIFSRYPAAPAIFVWDVALLKEWQIRL
                     KRLVFLYECLLDLPVQMYRGEVAPLVNAFVELHGGDRVVTMASPSPRFRAICGQLAYP
                     LEILEPEPFVTLPANADLKRFFRYWKLAKPRLGL"
     gene            11299..12438
                     /locus_tag="tlr0012"
                     /db_xref="GeneID:1010631"
     CDS             11299..12438
                     /locus_tag="tlr0012"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680803.1"
                     /db_xref="GI:22297556"
                     /db_xref="GeneID:1010631"
                     /translation="MLAIAHSLEKLPWPPRFSLLDRYILREMIRPFVFGFGIFTAIAA
                     VIGTVFYLIRNMVEHHLGLLSAIQVFFLRLPTFAVLGIPMAMLFGALLSYSQLSRRSE
                     LIACKSCGVSPVRLVRPALLAGFCALLCTFALNELVAPPLAYRAIKTLEVAIHRPQPT
                     FQTRNIFYRRFGDGHLRQLFFAHRFDGKVMGQVTVLNFEQGELREIITAQEAQWQGSA
                     WLFRQGTYHHLRGDRDYDVAEIFSERRFAYPRTPLDLAMETRVPEFMTSREIYRYLQI
                     LAESGDAKRLRQWRVQLQEKLSLPFLCLSFAVIGAVLGISSPRQGQGRAFGLSVAIIF
                     GYYVAAFIFTAFGEGGAVHPIVASWLPKGIVSAIALGMLYDANRH"
     misc_feature    11347..12435
                     /locus_tag="tlr0012"
                     /note="Predicted permeases [General function prediction
                     only]; Region: COG0795"
                     /db_xref="CDD:223866"
     misc_feature    11362..12420
                     /locus_tag="tlr0012"
                     /note="Predicted permease YjgP/YjgQ family; Region:
                     YjgP_YjgQ; pfam03739"
                     /db_xref="CDD:217705"
     gene            complement(12457..13638)
                     /locus_tag="tll0013"
                     /db_xref="GeneID:1010632"
     CDS             complement(12457..13638)
                     /locus_tag="tll0013"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-L-amino acid amidohydrolase"
                     /protein_id="NP_680804.1"
                     /db_xref="GI:22297557"
                     /db_xref="GeneID:1010632"
                     /translation="MLARIRQITHTLTPRLIEIRRHLHRYPELSGQEHQTAAYVAGVL
                     SSAGLSVQQDVGKVGVIAELEGNSKEQRLLAIRTDMDALPIQERTGLEFSSKHAGVMH
                     ACGHDVHTTVGLGTAMVLAALKEEFPGRVRFIFQPAEEIAQGASWMIADGAMEAVSAI
                     LSLHVFPSIPAGDVAVRYGALTAAADDIELTILGESGHGARPHEAVDAIWIAAQVISA
                     LQQAISRTQNPLRPVVLTFGKIQGGRAANVIADQVTLQGTVRSLHPETRATLPTWIEQ
                     IVANVCHAYGARYQLHYRRGVPGVENTPYLSQLLAEAATEVVGAPHVHILPEPSLGAE
                     DFALYLEHAPGAMFRLGVGFRDRPNYPLHHPEFDVDEQAIPVGVMTLAHAACRYWQIP
                     Y"
     misc_feature    complement(12469..13599)
                     /locus_tag="tll0013"
                     /note="Metal-dependent
                     amidase/aminoacylase/carboxypeptidase [General function
                     prediction only]; Region: AbgB; COG1473"
                     /db_xref="CDD:224390"
     misc_feature    complement(12484..13593)
                     /locus_tag="tll0013"
                     /note="M20 Peptidase Aminoacylase 1 family; Region:
                     M20_Acy1; cd03886"
                     /db_xref="CDD:193507"
     misc_feature    complement(order(12550..12552,13147..13149,13219..13221,
                     13321..13323,13327..13329))
                     /locus_tag="tll0013"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193507"
     misc_feature    complement(order(12865..12873,12889..12891,12895..12900,
                     12910..12930,12979..12981,12988..12990,12997..12999,
                     13009..13014,13078..13080))
                     /locus_tag="tll0013"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:193507"
     gene            complement(13685..14158)
                     /locus_tag="tll0014"
                     /db_xref="GeneID:1010633"
     CDS             complement(13685..14158)
                     /locus_tag="tll0014"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680805.1"
                     /db_xref="GI:22297558"
                     /db_xref="GeneID:1010633"
                     /translation="MGIEIERKFLVTGEQWRSLATSVAEFAQGYLSTVPERTVRVRLA
                     AEEAWITIKGKARGGQRREYEYAIPVTEARELLEELCLQPIIQKNRYRIPVGDLCWEI
                     DEFAGACRGLILAEIELPRADYPLTLPPWVGPEVTDDPRYTNAYLAEHPYQEWSP"
     misc_feature    complement(13706..14152)
                     /locus_tag="tll0014"
                     /note="CYTH-like Clostridium thermocellum TTM-like
                     subgroup 1; Region: CYTH-like_CthTTM-like_1; cd07891"
                     /db_xref="CDD:143629"
     misc_feature    complement(order(13805..13807,13811..13813,13850..13852,
                     13889..13891,13895..13897,13964..13966,13970..13972,
                     14000..14002,14033..14035,14039..14041,14141..14143,
                     14147..14149))
                     /locus_tag="tll0014"
                     /note="putative active site [active]"
                     /db_xref="CDD:143629"
     misc_feature    complement(order(13805..13807,13811..13813,14141..14143,
                     14147..14149))
                     /locus_tag="tll0014"
                     /note="putative metal binding residues [ion binding];
                     other site"
                     /db_xref="CDD:143629"
     misc_feature    complement(order(14135..14137,14141..14143,14147..14149))
                     /locus_tag="tll0014"
                     /note="signature motif; other site"
                     /db_xref="CDD:143629"
     misc_feature    complement(order(13919..13921,13931..13936,13943..13945,
                     13955..13963,13967..13969,14003..14005,14009..14011,
                     14042..14044,14048..14050,14063..14068))
                     /locus_tag="tll0014"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:143629"
     misc_feature    complement(order(13889..13891,13895..13897,14000..14002,
                     14039..14041))
                     /locus_tag="tll0014"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:143629"
     gene            complement(14162..15625)
                     /locus_tag="tll0015"
                     /db_xref="GeneID:1010634"
     CDS             complement(14162..15625)
                     /locus_tag="tll0015"
                     /codon_start=1
                     /transl_table=11
                     /product="lignostilbene-alpha,beta-dioxygenase"
                     /protein_id="NP_680806.1"
                     /db_xref="GI:22297559"
                     /db_xref="GeneID:1010634"
                     /translation="MTGVLDRPYTMADWRGGTESLTQEYDYWIEEVEGTVPTDLVGTL
                     YRNGPGLLERGGVPLAHPFDGDGMICAFRFEKGRVHFRNRYVRTAGFLEEEKANRLLY
                     RGVFGTQKPGGWFANFLDTRVKNIANTHVIYWAGKLLALWEASLPHRLDPVTLETIGL
                     DNLGGLLRERDAFAAHPRFDPQTQRLVNFGVQPGLNTRIRLYEFDANGQCVSQPTFQI
                     PGFAFIHDFALTPNYAIVFQNPVQFNPLPYLLGLRGAAQCLQFNAQEPTRVWLLPRRG
                     GPPQMLTMPPCFVFHHANAYEVGDEIHVESIAYSHFPNLEPGMDFREVNFAALPASLL
                     WRIQLNPKTKAVDWQVVSDRPCEFPVVHPAKVGQPYRYTYLAAGHDPKTNAPLQALWR
                     CDRQTGEEQFWSAAPRGFVSEPIVVPRGLQKGDFLWQGAQGEEDGWLLQVVYDASCHK
                     SQLLIFDAAAISAGPVARLHLKHHIPYGLHGSFTTAV"
     misc_feature    complement(14165..15625)
                     /locus_tag="tll0015"
                     /note="Lignostilbene-alpha,beta-dioxygenase and related
                     enzymes [Secondary metabolites biosynthesis, transport,
                     and catabolism]; Region: COG3670"
                     /db_xref="CDD:226196"
     misc_feature    complement(14174..15568)
                     /locus_tag="tll0015"
                     /note="Retinal pigment epithelial membrane protein;
                     Region: RPE65; pfam03055"
                     /db_xref="CDD:217340"
     gene            complement(15622..16977)
                     /locus_tag="tll0016"
                     /db_xref="GeneID:1010635"
     CDS             complement(15622..16977)
                     /locus_tag="tll0016"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680807.1"
                     /db_xref="GI:22297560"
                     /db_xref="GeneID:1010635"
                     /translation="MLVQPSQPQRWLRGLKETLLFGQEPSGELLAILLVYFVQGVLGL
                     ARLAISFFFKDELGLSPAEVAALMGVAALPWVIKPVFGLVSDSLPLLGFRRRSYLVLS
                     GLLGCGAWLSLGTWVATPWQATAAILGASIAIALSDVIVDSLVVERARQESATEMGTL
                     QSLSWAATAVGGILTAYFSGQLLQWFSPRTVFQITAVFPLLVSAVAGAIAEERVMARP
                     QLSQTWEHINHVRQAMMQKRIWLPVAFLFLWQATPGSESAFFFFTTNELGFEAEFLGR
                     VRLVTSIASLLGVWIFQRYLKTLPLRTIFFWSTILSAFLGLSSLILVTHLNRQWGISD
                     QWFSLGDSLILAVMGQIAFMPVLVLAARLCPPGIEATLFALLMSISNLANLVSHELGA
                     LLTHWLGITEHNFDRLWLLVLMTNLSTLLPLPLLNWLPQQLPAPASQSAVTVELEPSV
                     S"
     misc_feature    complement(15817..16893)
                     /locus_tag="tll0016"
                     /note="Major Facilitator Superfamily; Region: MFS_1;
                     pfam07690"
                     /db_xref="CDD:219516"
     misc_feature    complement(15775..16884)
                     /locus_tag="tll0016"
                     /note="The Major Facilitator Superfamily (MFS) is a large
                     and diverse group of secondary transporters that includes
                     uniporters, symporters, and antiporters. MFS proteins
                     facilitate the transport across cytoplasmic or internal
                     membranes of a variety of...; Region: MFS; cd06174"
                     /db_xref="CDD:119392"
     misc_feature    complement(order(15826..15828,15835..15840,15847..15852,
                     15859..15864,15895..15897,15904..15909,15919..15921,
                     15928..15933,15940..15942,16111..16113,16123..16125,
                     16132..16134,16144..16146,16156..16158,16204..16209,
                     16216..16221,16228..16230,16462..16464,16480..16485,
                     16492..16497,16540..16542,16549..16554,16561..16566,
                     16573..16578,16732..16737,16741..16746,16753..16755,
                     16762..16767,16774..16776,16825..16833,16840..16842))
                     /locus_tag="tll0016"
                     /note="putative substrate translocation pore; other site"
                     /db_xref="CDD:119392"
     gene            complement(17096..17308)
                     /locus_tag="tsl0017"
                     /db_xref="GeneID:1010636"
     CDS             complement(17096..17308)
                     /locus_tag="tsl0017"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680808.1"
                     /db_xref="GI:22297561"
                     /db_xref="GeneID:1010636"
                     /translation="MAIKKGDLVKVVAEKLANSLEALASDHRYPPYLFEGRGEVVDIR
                     GDYAQIKFPVPTPTVWLRLDQLEVAQ"
     misc_feature    complement(17102..17302)
                     /locus_tag="tsl0017"
                     /note="Cyanobacterial and plant NDH-1 subunit O; Region:
                     NdhO; pfam11910"
                     /db_xref="CDD:152345"
     gene            17429..18859
                     /locus_tag="tlr0018"
                     /db_xref="GeneID:1010637"
     CDS             17429..18859
                     /locus_tag="tlr0018"
                     /note="bifunctional"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase / guanosine
                     5'-diphospho-D-mannose pyrophosphorylase"
                     /protein_id="NP_680809.1"
                     /db_xref="GI:22297562"
                     /db_xref="GeneID:1010637"
                     /translation="MDCIPVILSGGVGSRLWPLSRQAHPKQFIRLTPEGKSLLQQTWQ
                     RVQGLPQLQPPLVVANEAHRFLVAEQFQELGVTPTRILLEPVGRNTAPAITVAALYVT
                     EVLASDALLLVLPADHFIQDVAHFQWGLQRGFSAAAKDWLVTFGIAPTSPHTGYGYIR
                     RGESLSDPDTYRVAEFVEKPDLATAEAYLAAGNYLWNSGMFLFRAQSFLAELAQQQPQ
                     ILDYCRLALRQGREDLDFIRLGKEAFDQCPNLSVDYGLMEKTQKAAVVPLDCGWSDVG
                     SWSSLWEILPKDEWGNSCRGDVLVYNSKDCFAQSQHRLVALVGVDNLMVVETADAILI
                     AHREAAQQVKQVVEQLQARNRSEAYNHRLVYRPWGYYDAIDAGHRFQVKRITVKPGAS
                     LSLQQHHHRAEHWIVVSGTAEVTCNGKTFLLTENESTYIPVGAVHRLANPGKIPLEMI
                     EVQSGSYLGEDDIVRFEDCYGRKTEE"
     misc_feature    17435..18271
                     /locus_tag="tlr0018"
                     /note="GDP-M1P_Guanylyltransferase catalyzes the formation
                     of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
                     cd02509"
                     /db_xref="CDD:133003"
     misc_feature    17438..18844
                     /locus_tag="tlr0018"
                     /note="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase; Region:
                     GMP_PMI; TIGR01479"
                     /db_xref="CDD:233431"
     misc_feature    order(17450..17452,17456..17458,17777..17779)
                     /locus_tag="tlr0018"
                     /note="Substrate binding site; other site"
                     /db_xref="CDD:133003"
     misc_feature    18380..18832
                     /locus_tag="tlr0018"
                     /note="Mannose-6-phosphate isomerase; Region:
                     MannoseP_isomer; pfam01050"
                     /db_xref="CDD:144587"
     gene            complement(18870..19319)
                     /locus_tag="tll0019"
                     /db_xref="GeneID:1010638"
     CDS             complement(18870..19319)
                     /locus_tag="tll0019"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680810.1"
                     /db_xref="GI:22297563"
                     /db_xref="GeneID:1010638"
                     /translation="MMDGLRELLANHVLWVAFAASAIAQMLKLLIDIAKHRKLNFRVL
                     VETGGMPSSHSALVTALATGVGLQRGWDSIEFAIAVVFACIVMYDAAGVRQAAGKQAR
                     ILNQIVDEFFQEGHELAEAHLKELLGHTPIQVIVGSALGVAIAWLAV"
     misc_feature    complement(18885..19298)
                     /locus_tag="tll0019"
                     /note="Divergent PAP2 family; Region: DUF212; pfam02681"
                     /db_xref="CDD:145700"
     gene            complement(19371..20294)
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /db_xref="GeneID:1010639"
     CDS             complement(19371..20294)
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranyl pyrophosphate synthase"
                     /protein_id="NP_680811.1"
                     /db_xref="GI:22297564"
                     /db_xref="GeneID:1010639"
                     /translation="MISADPPQVHPAGTFDLKAYLKERQALVEAALEASIPVAYPEKI
                     YDAMRYSLMAGGKRLRPILCLATCELMGGTVEMAMPTACALEMIHTMSLIHDDLPAMD
                     NDDYRRGKPTNHKVYGEDIAILAGDGLLAYAFEYVVEQTKNVPAEYLLKIVARLGHAV
                     AATGLVGGQVVDLECEGQPDIGLETLHFIHSHKTGALLEASVVSGALLTGAHESDVAR
                     LSRYAANIGLAFQIVDDILDITSTRDVLGKTVGKDVAAQKMTYPRLWGLEKSRQEAER
                     LVAEAKAELAVYGAAAVPLQAIADYITSRSH"
     misc_feature    complement(19374..20249)
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="Geranylgeranyl pyrophosphate synthase [Coenzyme
                     metabolism]; Region: IspA; COG0142"
                     /db_xref="CDD:223220"
     misc_feature    complement(19380..20174)
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="Trans-Isoprenyl Diphosphate Synthases,
                     head-to-tail; Region: Trans_IPPS_HT; cd00685"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19521..19523,19536..19538,19551..19553,
                     19581..19583,19590..19595,19704..19706,19713..19718,
                     19779..19781,19788..19790,19971..19976,19989..19994,
                     20004..20012,20016..20024,20031..20033))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19989..19994,20001..20024))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="chain length determination region; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19521..19523,19536..19538,19551..19553,
                     19581..19583,19590..19595,19716..19718,19779..19781,
                     19971..19976,19989..19991,20004..20009))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="substrate-Mg2+ binding site; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19590..19595,19716..19718,19971..19976,
                     19989..19991,20004..20009))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19716..19718,19779..19781,19971..19976,
                     19989..19991,20004..20009))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="aspartate-rich region 1; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19515..19529,19536..19553,19569..19574,
                     19941..19985))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="active site lid residues [active]"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(19521..19523,19536..19538,19551..19553,
                     19581..19583,19590..19595))
                     /gene="crtE"
                     /locus_tag="tll0020"
                     /note="aspartate-rich region 2; other site"
                     /db_xref="CDD:173833"
     gene            complement(20305..21150)
                     /gene="folD"
                     /locus_tag="tll0021"
                     /db_xref="GeneID:1010640"
     CDS             complement(20305..21150)
                     /gene="folD"
                     /locus_tag="tll0021"
                     /codon_start=1
                     /transl_table=11
                     /product="FolD bifunctional protein"
                     /protein_id="NP_680812.1"
                     /db_xref="GI:22297565"
                     /db_xref="GeneID:1010640"
                     /translation="MRTFQAQWGRSPGLAVLRVGNDPASAVYVRAKEQACSRVGIQSF
                     GAHLPATITEAALLAKITELNQDERVDGILLQLPLPPHLDPRPLLYAIHPDKDVDGLH
                     PENLGRLVRDEPGLRSCTPAGVMQLLAAYGIDVVGRSAVVVGRSILVGKPLALMLLSA
                     NATVTIAHSRSRELASITRSAEILVTAMGQPRRITADMIRPGAVVIDVGINRIQRPDG
                     KSSLWGDVDYEAARAVASYITPVPGGVGPMTVAMLLHNTVWSYCRRHNWQQPLLSLTS
                     MPPAP"
     misc_feature    complement(20353..21141)
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="5,10-methylene-tetrahydrofolate
                     dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
                     [Coenzyme metabolism]; Region: FolD; COG0190"
                     /db_xref="CDD:223268"
     misc_feature    complement(20854..>21126)
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="Tetrahydrofolate dehydrogenase/cyclohydrolase,
                     catalytic domain; Region: THF_DHG_CYH; pfam00763"
                     /db_xref="CDD:201431"
     misc_feature    complement(20377..20871)
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="NADP binding domain of methylene-tetrahydrofolate
                     dehydrogenase/cyclohydrolase; Region:
                     NAD_bind_m-THF_DH_Cyclohyd; cd01080"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(20611..20613,20638..20643,20647..20649,
                     20653..20670,20677..20679,20686..20691,20716..20718,
                     20734..20736,20740..20742,20830..20832,20839..20844))
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(20404..20406,20413..20415,20521..20523,
                     20527..20529,20572..20574,20581..20583,20587..20589,
                     20644..20649,20713..20718,20791..20793))
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(20401..20403,20422..20427))
                     /gene="folD"
                     /locus_tag="tll0021"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133448"
     gene            complement(21388..21723)
                     /locus_tag="tll0022"
                     /db_xref="GeneID:1010641"
     CDS             complement(21388..21723)
                     /locus_tag="tll0022"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680813.1"
                     /db_xref="GI:22297566"
                     /db_xref="GeneID:1010641"
                     /translation="MKYFFLTEGWHIGRVWEPQGLWNEQAWRRSPVITRTCLYILEGE
                     EKLWLYQVEDMVLMVEVKPSHPDPASTIGQVVLKRLMSAEDVLTYLCTTPAISNIQVE
                     RGSPAGDRP"
     gene            complement(21720..21917)
                     /locus_tag="tsl0023"
                     /db_xref="GeneID:1010642"
     CDS             complement(21720..21917)
                     /locus_tag="tsl0023"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680814.1"
                     /db_xref="GI:22297567"
                     /db_xref="GeneID:1010642"
                     /translation="MPVTKSIRNTARMILGVIFGIIGVVGFLLPLVPGTPFLLMAAAC
                     FNSMEPEETASTRGNESPPGA"
     misc_feature    complement(<21768..21830)
                     /locus_tag="tsl0023"
                     /note="Protein of unknown function (DUF454); Region:
                     DUF454; cl01063"
                     /db_xref="CDD:242279"
     gene            complement(21994..22638)
                     /locus_tag="tll0024"
                     /db_xref="GeneID:1010643"
     CDS             complement(21994..22638)
                     /locus_tag="tll0024"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680815.1"
                     /db_xref="GI:22297568"
                     /db_xref="GeneID:1010643"
                     /translation="MTNPQHLQLLKQGVTAWNQWREQNSDIRPDLGQADLTGANLELY
                     NLTNANLDQANLAGADLRNALLKDAYMAGANLYMSDLIEADLQGACLQRATLVGADLY
                     KSNIAMADLRQANLVGALLRRVSLVEATLAYANLTRANLFQANLYLADLKGAILQEAI
                     LESASLIEANFESAVLIAAKMAKANARRANFKGANLYKAEMDDMDLRNAILDKA"
     misc_feature    complement(22450..22551)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (8 copies); Region:
                     Pentapeptide; pfam00805"
                     /db_xref="CDD:109845"
     misc_feature    complement(22276..22506)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (9 copies); Region:
                     Pentapeptide_4; pfam13599"
                     /db_xref="CDD:205777"
     misc_feature    complement(22360..22479)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (8 copies); Region:
                     Pentapeptide; pfam00805"
                     /db_xref="CDD:109845"
     misc_feature    complement(22285..22404)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (8 copies); Region:
                     Pentapeptide; pfam00805"
                     /db_xref="CDD:109845"
     misc_feature    complement(22141..22368)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (9 copies); Region:
                     Pentapeptide_4; pfam13599"
                     /db_xref="CDD:205777"
     misc_feature    complement(22153..22263)
                     /locus_tag="tll0024"
                     /note="Pentapeptide repeats (8 copies); Region:
                     Pentapeptide; pfam00805"
                     /db_xref="CDD:109845"
     gene            complement(22644..23105)
                     /locus_tag="tll0025"
                     /db_xref="GeneID:1010645"
     CDS             complement(22644..23105)
                     /locus_tag="tll0025"
                     /codon_start=1
                     /transl_table=11
                     /product="FUR family transcriptional regulator"
                     /protein_id="NP_680816.1"
                     /db_xref="GI:22297569"
                     /db_xref="GeneID:1010645"
                     /translation="MFTSPAPSSLPPIRSLEDAIDRCQRLGLRLSRQRRAILELLWDA
                     KDHLSARQIYDRLNQAGKDIGHTSVYQNLEALSEHGIIECVERADGRLYGNISDSHSH
                     VNCLDTQKIIDVHVELPPSLVAEIEAKTGVKIVDYRIDFYGYQNTEPSAQG"
     misc_feature    complement(22674..23000)
                     /locus_tag="tll0025"
                     /note="Ferric uptake regulator(Fur) and related
                     metalloregulatory proteins; typically iron-dependent,
                     DNA-binding repressors and activators; Region: Fur_like;
                     cd07153"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(22767..22769,22800..22802,22806..22808,
                     22965..22967))
                     /locus_tag="tll0025"
                     /note="metal binding site 2 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(22869..22913)
                     /locus_tag="tll0025"
                     /note="putative DNA binding helix; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(22695..22697,22746..22748,22803..22805,
                     22809..22811))
                     /locus_tag="tll0025"
                     /note="metal binding site 1 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(22674..22700,22704..22712,22737..22742,
                     22788..22796))
                     /locus_tag="tll0025"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(22782..22784,22791..22793))
                     /locus_tag="tll0025"
                     /note="structural Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:133478"
     gene            complement(23238..23537)
                     /locus_tag="tll0026"
                     /db_xref="GeneID:1010646"
     CDS             complement(23238..23537)
                     /locus_tag="tll0026"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680817.1"
                     /db_xref="GI:22297570"
                     /db_xref="GeneID:1010646"
                     /translation="MDWQSFALGFAIVFLSELGDKSQLVAITLGSNARSTTAVFLGVA
                     SGLVCTTFLGVLLGSGIATLIPVKVVKAIAAMMFAFLGFYLLSQTTAESLDKGQI"
     misc_feature    complement(23274..>23534)
                     /locus_tag="tll0026"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG2119"
                     /db_xref="CDD:225030"
     misc_feature    complement(23292..23522)
                     /locus_tag="tll0026"
                     /note="Uncharacterized protein family UPF0016; Region:
                     UPF0016; pfam01169"
                     /db_xref="CDD:216341"
     gene            23700..24683
                     /locus_tag="tlr0027"
                     /db_xref="GeneID:1010647"
     CDS             23700..24683
                     /locus_tag="tlr0027"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680818.1"
                     /db_xref="GI:22297571"
                     /db_xref="GeneID:1010647"
                     /translation="MRLLNTTDGSSAIAPDPSFLTSPAQAWAKRYISNLNTPTLAEDD
                     PAVVAPRLLAELRSASVKAWQRTEGFLAEAMIRHGIPAELVDPWSISKDIHDIYQHTL
                     KLYVAGKGTQQMTAKIASAVSEIRSRYTAVDSRVIGFVSMQFHHTGVLLLEVAPINQR
                     PILSRFFKVIDDHLYMPLHRLYSAAANYDYNDPALALVRHLLPQSTAIATAICHRVAE
                     LNPQHRCFSGPLTEASVRVSSIRDVEMFQIYLWVCLLEQSLEALQRELFPLCLMLYPS
                     LNVTWELVFQMVHLLGKEIQTRAPGHDTSVFTPYYLSFREMFDPKIFQGLP"
     gene            24680..25006
                     /locus_tag="tlr0028"
                     /db_xref="GeneID:1010649"
     CDS             24680..25006
                     /locus_tag="tlr0028"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680819.1"
                     /db_xref="GI:22297572"
                     /db_xref="GeneID:1010649"
                     /translation="MIPNLPQVSFSPIAIAGSGLWAIALYWGFYPTGQAFMQRLVMWL
                     GGEANQSAEFWAGMVGLIPFILVGTGCFVLCSLGLGQSWALSLGLMATIGGAIYELGR
                     RDGQRS"
     gene            25137..26279
                     /locus_tag="tlr0029"
                     /db_xref="GeneID:1010650"
     CDS             25137..26279
                     /locus_tag="tlr0029"
                     /note="interacts with the circadian clock regulator KaiC
                     to maintain circadian rhythms"
                     /codon_start=1
                     /transl_table=11
                     /product="adaptive-response sensory kinase"
                     /protein_id="NP_680820.1"
                     /db_xref="GI:22297573"
                     /db_xref="GeneID:1010650"
                     /translation="MKASADASSPQETTPPLSLLLFVANRPGDEEETAAIQAHIQQLP
                     SNFSFELKVVPIGEQPYLLEEYKLVATPALIKVRPEPRQTLAGRKLLQKVDYWWPRWQ
                     REVALGLQADMQKSAAEQSDCSMELSRLKDELFQLRQERDRLAEQLQFKDRIISLLAH
                     ELRNPLTAGGIALETLESNLQEESSQQLPIEDIQRLFHHARSQTQTMGQLITDLLLAA
                     RGPQDKLQIMARQLDLRQLCQETVEDVRLNFERKKQHFTTDIPLDLPLVYGDGDRIRQ
                     VLVNLLDNACKYTPEGGKIHLSAFHRMTQKVQVTVSDTGPGIPIEQQEKIFGETVRLD
                     RDRAIEGYGIGLALCRQIIRMHYGQIWVDSQPGKGSCFHFTLPVYS"
     misc_feature    25143..26273
                     /locus_tag="tlr0029"
                     /note="adaptive-response sensory kinase; Validated;
                     Region: PRK09303"
                     /db_xref="CDD:236462"
     misc_feature    25182..25397
                     /locus_tag="tlr0029"
                     /note="KaiB-like family; composed of the circadian clock
                     proteins, KaiB and the N-terminal KaiB-like sensory domain
                     of SasA. KaiB is an essential protein in maintaining
                     circadian rhythm. It was originally discovered from the
                     cyanobacterium Synechococcus as part...; Region:
                     KaiB_like; cd02978"
                     /db_xref="CDD:239276"
     misc_feature    order(25185..25187,25239..25241,25248..25253,25326..25328,
                     25335..25337,25341..25343,25353..25355,25362..25367,
                     25374..25379)
                     /locus_tag="tlr0029"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239276"
     misc_feature    order(25305..25307,25314..25325,25332..25340,25344..25346,
                     25353..25355)
                     /locus_tag="tlr0029"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239276"
     misc_feature    25578..25793
                     /locus_tag="tlr0029"
                     /note="Histidine Kinase A (dimerization/phosphoacceptor)
                     domain; Histidine Kinase A dimers are formed through
                     parallel association of 2 domains creating 4-helix
                     bundles; usually these domains contain a conserved His
                     residue and are activated via...; Region: HisKA; cd00082"
                     /db_xref="CDD:119399"
     misc_feature    order(25596..25598,25608..25610,25620..25622,25629..25631,
                     25641..25643,25650..25652,25722..25724,25734..25736,
                     25743..25745,25755..25757,25764..25766,25776..25778)
                     /locus_tag="tlr0029"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119399"
     misc_feature    25614..25616
                     /locus_tag="tlr0029"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:119399"
     misc_feature    25956..26264
                     /locus_tag="tlr0029"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(25974..25976,25986..25988,25995..25997,26067..26069,
                     26073..26075,26079..26081,26085..26090,26163..26174,
                     26220..26222,26226..26228,26241..26246,26250..26252)
                     /locus_tag="tlr0029"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    25986..25988
                     /locus_tag="tlr0029"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(26079..26081,26085..26087,26163..26165,26169..26171)
                     /locus_tag="tlr0029"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            complement(26276..27235)
                     /locus_tag="tll0030"
                     /db_xref="GeneID:1010651"
     CDS             complement(26276..27235)
                     /locus_tag="tll0030"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680821.1"
                     /db_xref="GI:22297574"
                     /db_xref="GeneID:1010651"
                     /translation="MTPPAAIRLLPSDQKLFQDLLGYHELTTKAEKQAALISLLQRDR
                     AQVIVKSLAQAAFPQTAFNVALWMLNHDLVTLDWLYDITYRISTQGCQETIDLGLLYT
                     SLQHLSPGDAAIVLGQTDAALKAIRLDDLDLATLITTLEPGVAISLLSWFVTFKKITT
                     VDLEYISQIVQKLKPTAAPPQETTEIHSQPLVPEPRIIELTLEDKLLELNLQLGGTET
                     EILPKVLDRFLFRRTREDKVVYRPNTQVVRLACVGGERRDIPVPVRSAKTWPPGVYVI
                     YREQESLQLMRLPDNEFYEILPFGPDPYLRAETIARMIEEGQP"
     gene            28791..30485
                     /locus_tag="tlr0031"
                     /db_xref="GeneID:1010652"
     CDS             28791..30485
                     /locus_tag="tlr0031"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="NP_680822.1"
                     /db_xref="GI:22297575"
                     /db_xref="GeneID:1010652"
                     /translation="MPPCYPTMTVDQTTGAVTNQTEISWHSINWAKANREVKRLQVRI
                     AKAVKEGRWGKVKALQWLLTHSFYGKALAVKRVTDNSGSKTPGVDGITWSTQEQKTQA
                     IKSLRRRGYKPQPLRRVYIPKANGKQRPLGIPTMKDRAMQALYALALEPVAETTADRN
                     SYGFRRGRCTADAAGQCFLALARAKSAEHVLDADISGCFDNISHEWLLANTPLDKGIL
                     RKWLKSGFVWKQQLFPTHAGTPQGGVISPVLANITLDGMEELLAKHLRGQKVNLIRYA
                     DDFVVTGKDEETLEKARNLIQEFLKERGLTLSPEKTKIVHIEEGFDFLGWNIRKYNGV
                     LLIKPAKKNVKAFLKKIRDTLRELRTATQEIVIDTLNPIIRGWANYHKGQVSKETFNR
                     VDFATWHKLWRWARRRHPNKPAQWVKDKYFIKNGSRDWVFGMVMKDKNGELRTKRLIK
                     TSDTRIQRHVKIKADANPFLPEWAEYFEKRKKLKKAPAQYRRIRRELWKKQGGICPVC
                     GGEIEQDMLTDIHHILPKHKGGSDDLDNLVLIHANCHKQVHSRDGQHSRSLLKEGL"
     misc_feature    28863..29111
                     /locus_tag="tlr0031"
                     /note="N-terminal domain of reverse transcriptase; Region:
                     RVT_N; pfam13655"
                     /db_xref="CDD:222291"
     misc_feature    29139..29774
                     /locus_tag="tlr0031"
                     /note="RT_G2_intron: Reverse transcriptases (RTs) with
                     group II intron origin. RT transcribes DNA using RNA as
                     template. Proteins in this subfamily are found in
                     bacterial and mitochondrial group II introns. Their most
                     probable ancestor was a retrotransposable...; Region:
                     RT_G2_intron; cd01651"
                     /db_xref="CDD:238828"
     misc_feature    29151..29774
                     /locus_tag="tlr0031"
                     /note="Reverse transcriptase (RNA-dependent DNA
                     polymerase); Region: RVT_1; pfam00078"
                     /db_xref="CDD:215698"
     misc_feature    order(29370..29387,29511..29516,29613..29615,29619..29624,
                     29760..29765)
                     /locus_tag="tlr0031"
                     /note="putative active site [active]"
                     /db_xref="CDD:238828"
     misc_feature    order(29370..29387,29511..29513,29619..29621)
                     /locus_tag="tlr0031"
                     /note="putative NTP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238828"
     misc_feature    29514..29516
                     /locus_tag="tlr0031"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238828"
     misc_feature    29820..30056
                     /locus_tag="tlr0031"
                     /note="Group II intron, maturase-specific domain; Region:
                     GIIM; pfam08388"
                     /db_xref="CDD:219816"
     misc_feature    30162..>30446
                     /locus_tag="tlr0031"
                     /note="Restriction endonuclease [Defense mechanisms];
                     Region: McrA; COG1403"
                     /db_xref="CDD:224321"
     misc_feature    30264..30437
                     /locus_tag="tlr0031"
                     /note="HNH nucleases; HNH endonuclease signature which is
                     found in viral, prokaryotic, and eukaryotic proteins. The
                     alignment includes members of the large group of homing
                     endonucleases, yeast intron 1 protein, MutS, as well as
                     bacterial colicins, pyocins, and...; Region: HNHc;
                     cd00085"
                     /db_xref="CDD:238038"
     misc_feature    order(30342..30344,30351..30359,30363..30365,30396..30401,
                     30411..30416,30423..30425,30435..30437)
                     /locus_tag="tlr0031"
                     /note="active site"
                     /db_xref="CDD:238038"
     gene            complement(30580..31596)
                     /locus_tag="tll0032"
                     /db_xref="GeneID:1010653"
     CDS             complement(30580..31596)
                     /locus_tag="tll0032"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine
                     N-acyltransferase"
                     /protein_id="NP_680823.1"
                     /db_xref="GI:22297576"
                     /db_xref="GeneID:1010653"
                     /translation="MRLADVAERFGATLDCPEHGDRPVLGVAPLETATATDISFLANP
                     KYTALLQTTQAAAVFVRPDFQGEAACPLLRVPHPYLAFAKCIEWFYPQPKPVAKIHPT
                     AILGADVVLGAEVTIGAYTVIGDRVRIGDRTVIDSHCTLYDDVVIGSDCRIYSHCALR
                     ERVQLGDRVILQNSVVLGSDGFGYVPLPDGRHYKIPQVGTVVIGNDVEIGAGTTIDRA
                     TLGETTVANGTKIDNLTMVAHNCTIGENAILCAQVGLAGSTHIGNHVVLAGQVGAAGH
                     LTIGDRTVVSAKSGISSSVPPDSRMGGIPAMDQTLYLKVSAAVKQLPDLLKRVRKLEA
                     KVGE"
     misc_feature    complement(30610..31584)
                     /locus_tag="tll0032"
                     /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
                     N-acyltransferase; Region: lipid_A_lpxD; TIGR01853"
                     /db_xref="CDD:233599"
     misc_feature    complement(31330..31539)
                     /locus_tag="tll0032"
                     /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
                     N-acyltransferase, LpxD; Region: LpxD; pfam04613"
                     /db_xref="CDD:218175"
     misc_feature    complement(30658..31275)
                     /locus_tag="tll0032"
                     /note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
                     The enzyme catalyzes the transfer of 3-hydroxymyristic
                     acid or 3-hydroxy-arachidic acid, depending on the
                     organism, from the acyl carrier protein (ACP) to
                     UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
                     LbH_LpxD; cd03352"
                     /db_xref="CDD:100043"
     misc_feature    complement(order(30664..30666,30676..30678,30727..30735,
                     30769..30771,30781..30789,30805..30807,30835..30843,
                     30853..30855,30859..30861,30877..30879,30889..30891,
                     30895..30903,30907..30909,30934..30942,30949..30951,
                     30955..30957,30961..30963,30973..30975,31009..31017,
                     31051..31053,31057..31059,31075..31077,31081..31083,
                     31117..31119,31123..31125,31129..31131,31168..31170,
                     31222..31227,31237..31239))
                     /locus_tag="tll0032"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100043"
     misc_feature    complement(order(30736..30738,30769..30774,30823..30831,
                     30844..30849,30877..30882,30889..30891,30901..30903,
                     31045..31053))
                     /locus_tag="tll0032"
                     /note="active site"
                     /db_xref="CDD:100043"
     misc_feature    complement(order(30769..30774,30823..30828,30877..30882,
                     31045..31053))
                     /locus_tag="tll0032"
                     /note="UDP-GlcNAc binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100043"
     misc_feature    complement(order(30736..30738,30829..30831,30844..30849,
                     30889..30891,30901..30903))
                     /locus_tag="tll0032"
                     /note="lipid binding site [chemical binding];
                     lipid-binding site"
                     /db_xref="CDD:100043"
     gene            31799..31984
                     /gene="nblA"
                     /locus_tag="tsr0033"
                     /db_xref="GeneID:1010654"
     CDS             31799..31984
                     /gene="nblA"
                     /locus_tag="tsr0033"
                     /codon_start=1
                     /transl_table=11
                     /product="phycobilisome degradation protein"
                     /protein_id="NP_680824.1"
                     /db_xref="GI:22297577"
                     /db_xref="GeneID:1010654"
                     /translation="MEQRFPELNVDLSVEQQFQMRVMEAQVSAMSLQEARELLLQASR
                     LLMMKDNVIRSLVKRAA"
     misc_feature    31823..31978
                     /gene="nblA"
                     /locus_tag="tsr0033"
                     /note="Phycobilisome degradation protein nblA; Region:
                     NblA; pfam04485"
                     /db_xref="CDD:203026"
     gene            complement(32156..32449)
                     /locus_tag="tsl0034"
                     /db_xref="GeneID:1010655"
     CDS             complement(32156..32449)
                     /locus_tag="tsl0034"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680825.1"
                     /db_xref="GI:22297578"
                     /db_xref="GeneID:1010655"
                     /translation="MLQDGNESLEIDLSVVNRDEAVLVPVKTQLSQGNIDEHLERIAK
                     FPRLAHQYRSTQLLGPVVGMIPRYAYRQGLFVLAQSRDGVTILHDPQFQLRPW"
     gene            32957..33289
                     /locus_tag="tlr0035"
                     /db_xref="GeneID:1010656"
     CDS             32957..33289
                     /locus_tag="tlr0035"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680826.1"
                     /db_xref="GI:22297579"
                     /db_xref="GeneID:1010656"
                     /translation="MSLQRTASAIAPRRYGFMTRLLLMSMVLTAIFSPLVTLATPLSP
                     IFNPISPTTGFESSEMNRLWQNQWPPKDRRKTNTTLQPSSDKVLQIELDGQLLTPSQA
                     QQLLLRQE"
     gene            33336..34058
                     /gene="sodB"
                     /locus_tag="tlr0036"
                     /db_xref="GeneID:1010657"
     CDS             33336..34058
                     /gene="sodB"
                     /locus_tag="tlr0036"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="NP_680827.1"
                     /db_xref="GI:22297580"
                     /db_xref="GeneID:1010657"
                     /translation="MRLTRRQTLGLLGVSAATLWLRSRPAVAAGEPSEIYTLPPLPYD
                     YDALEPVIDAETMRLHHDKHHAAYVNTLNKALTPYRQWHGLAIETLLRHLHQLPTAIQ
                     STVRNHGGGHANHSLFWQSMAPNGGGEPAGDLAIAIENTFGSFPEFQAQFQQAGLRHF
                     GSGWVWLVLTPQGNLTITTTLNQDSPLMQGQVPILGNDLWEHAYYLTYRNRRDQYLEA
                     WWQVVNWPWVSDRYAQMRELLA"
     misc_feature    33438..34046
                     /gene="sodB"
                     /locus_tag="tlr0036"
                     /note="Superoxide dismutase [Inorganic ion transport and
                     metabolism]; Region: SodA; COG0605"
                     /db_xref="CDD:223678"
     misc_feature    33441..33704
                     /gene="sodB"
                     /locus_tag="tlr0036"
                     /note="Iron/manganese superoxide dismutases, alpha-hairpin
                     domain; Region: Sod_Fe_N; pfam00081"
                     /db_xref="CDD:200985"
     misc_feature    33717..34031
                     /gene="sodB"
                     /locus_tag="tlr0036"
                     /note="Iron/manganese superoxide dismutases, C-terminal
                     domain; Region: Sod_Fe_C; pfam02777"
                     /db_xref="CDD:202388"
     gene            complement(34003..35025)
                     /locus_tag="tll0037"
                     /db_xref="GeneID:1010658"
     CDS             complement(34003..35025)
                     /locus_tag="tll0037"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-induced protein"
                     /protein_id="NP_680828.1"
                     /db_xref="GI:22297581"
                     /db_xref="GeneID:1010658"
                     /translation="MTTRESLTIDLHSIESAIALVGEQEANLRIFAAQTGATLVLRGR
                     DLYITGTPAQVQLCQQLIQDLGTLWREGRPVSGVDILTVRHAYDTQQREALQELQQDI
                     LARTRRGDIIRAKTFRQRQYIQAIRSHTLTFGIGPAGTGKTFLATVLAVQALLAGTYE
                     RLILTRPAVEAGERLGFLPGDLQQKIDPYLRPLYDALYELVEPEKISNLMERGVIEVA
                     PLAYMRGRTLNNAFVILDEAQNTTPAQMKMVLTRIGFNSCLVVTGDLTQTDLPEHQTS
                     GLSVATKILKDVEGIAFCYLTKGDVIRHPLVERIIDAYDRHEQALRTKPKARASGHSD
                     RSPKAN"
     misc_feature    complement(34033..35025)
                     /locus_tag="tll0037"
                     /note="Phosphate starvation-inducible protein PhoH,
                     predicted ATPase [Signal transduction mechanisms]; Region:
                     PhoH; COG1702"
                     /db_xref="CDD:224616"
     misc_feature    complement(34081..34692)
                     /locus_tag="tll0037"
                     /note="PhoH-like protein; Region: PhoH; pfam02562"
                     /db_xref="CDD:190347"
     gene            complement(35035..35208)
                     /gene="rpsU"
                     /locus_tag="tsl0038"
                     /db_xref="GeneID:1010659"
     CDS             complement(35035..35208)
                     /gene="rpsU"
                     /locus_tag="tsl0038"
                     /note="a small basic protein that is one of the last in
                     the subunit assembly; omission does not prevent assembly
                     but the subunit is inactive; binds central domain of 16S
                     rRNA"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="NP_680829.1"
                     /db_xref="GI:22297582"
                     /db_xref="GeneID:1010659"
                     /translation="MAEVRLGENESIESALRRFKKKIQKAGILSEVKRRERYEKPSLR
                     RKRKQEAARKRNR"
     misc_feature    complement(<35083..35208)
                     /gene="rpsU"
                     /locus_tag="tsl0038"
                     /note="30S ribosomal protein S21; Reviewed; Region: rpsU;
                     PRK00270"
                     /db_xref="CDD:234707"
     gene            complement(35212..35565)
                     /locus_tag="tll0039"
                     /db_xref="GeneID:1010660"
     CDS             complement(35212..35565)
                     /locus_tag="tll0039"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680830.1"
                     /db_xref="GI:22297583"
                     /db_xref="GeneID:1010660"
                     /translation="MTESAAPNYAALIRFLLEPFMEAPETLRLHAEFSPANSRIWVRL
                     AFAGEDKGRVYGRGGRNLQAIRAVLQAAAQAAGQQVYLDVYDDAKSTPKIDHQRSDRP
                     RRSRRRFYPSSRRQS"
     misc_feature    complement(<35380..35532)
                     /locus_tag="tll0039"
                     /note="KH domain; Region: KH_4; pfam13083"
                     /db_xref="CDD:221909"
     gene            complement(35569..35820)
                     /gene="rpsP"
                     /locus_tag="tsl0040"
                     /db_xref="GeneID:1010661"
     CDS             complement(35569..35820)
                     /gene="rpsP"
                     /locus_tag="tsl0040"
                     /note="binds to lower part of 30S body where it stabilizes
                     two domains; required for efficient assembly of 30S; in
                     Escherichia coli this protein has nuclease activity"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="NP_680831.1"
                     /db_xref="GI:22297584"
                     /db_xref="GeneID:1010661"
                     /translation="MIKLRLKRYGKKRNATYRIVAMNNTDRRDGRALEELGFYDPIHN
                     EVRLKEEAIKRRLAQGAQPTDTVRRLFVKANLLPETAQK"
     misc_feature    complement(35608..35820)
                     /gene="rpsP"
                     /locus_tag="tsl0040"
                     /note="30S ribosomal protein S16; Reviewed; Region: rpsP;
                     PRK00040"
                     /db_xref="CDD:234588"
     gene            35921..36817
                     /gene="fabD"
                     /locus_tag="tlr0041"
                     /db_xref="GeneID:1010662"
     CDS             35921..36817
                     /gene="fabD"
                     /locus_tag="tlr0041"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="NP_680832.1"
                     /db_xref="GI:22297585"
                     /db_xref="GeneID:1010662"
                     /translation="MPMTKTAWLFPGQGSQHPEMMADLLTAYPPAKARCEQAAAILGW
                     SVIDCCGGRIGNLDQTLYTQPSLFLVESLLVDALKERGAKADFVAGHSLGEYVALYAA
                     EVFDFETGLQLVQRRAALMNAAGGGKMVALIGFDREELQQAIARIPNVVLANDNHPGQ
                     VVISGLPEAVDALLAKIKVKRAVPLNVSGAFHSPFMAEAAATFATLLDECQFQEAVFP
                     VLNNVEPEPTTDAALIKARLRSQMTGSVRWVDTCYALAAAGVTQALEIGPGNVLAGLV
                     KRTTPEITVTGVATIASLESLV"
     misc_feature    35927..36811
                     /gene="fabD"
                     /locus_tag="tlr0041"
                     /note="(acyl-carrier-protein) S-malonyltransferase [Lipid
                     metabolism]; Region: FabD; COG0331"
                     /db_xref="CDD:223408"
     misc_feature    35930..36769
                     /gene="fabD"
                     /locus_tag="tlr0041"
                     /note="malonyl CoA-acyl carrier protein transacylase;
                     Region: fabD; TIGR00128"
                     /db_xref="CDD:232839"
     gene            36814..37449
                     /locus_tag="tlr0042"
                     /db_xref="GeneID:1010663"
     CDS             36814..37449
                     /locus_tag="tlr0042"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="NP_680833.1"
                     /db_xref="GI:22297586"
                     /db_xref="GeneID:1010663"
                     /translation="MSRDREPLISLLLYHLFKWSVVSPLLHTYFRGRIYGAHQVPLRG
                     PLVVVANHASYFDPPLISNCVRRPVAWMAKEELFHIPIFRTLIRWYGAYPVKRGAGDR
                     RALQAALKALQQGWAVGVFLEGTRTKDGRIDDPKLGAALIAAKAQAPLLPVCLWGTQE
                     ILKNGTFPRPVPVTVRIGAPIPPPASGDRAALEAVTQHCCDVIHRLHDLGR"
     misc_feature    36826..37437
                     /locus_tag="tlr0042"
                     /note="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     [Lipid metabolism]; Region: PlsC; COG0204"
                     /db_xref="CDD:223282"
     misc_feature    36886..37395
                     /locus_tag="tlr0042"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: AGPAT-like; Region:
                     LPLAT_AGPAT-like; cd07989"
                     /db_xref="CDD:153251"
     misc_feature    order(36967..36969,36976..36978,36982..36984,37030..37041,
                     37183..37191)
                     /locus_tag="tlr0042"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153251"
     gene            complement(37446..38468)
                     /gene="gap1"
                     /locus_tag="tll0043"
                     /db_xref="GeneID:1010664"
     CDS             complement(37446..38468)
                     /gene="gap1"
                     /locus_tag="tll0043"
                     /note="catalyzes the formation of 3-phospho-D-glyceroyl
                     phosphate from D-glyceraldehyde 3-phosphate"
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="NP_680834.1"
                     /db_xref="GI:22297587"
                     /db_xref="GeneID:1010664"
                     /translation="MTLRVGINGFGRIGRLVLRAGLACDNLQFVGINDLVPADNLAYL
                     FKYDSTHGMYPGTVKATAEGIEIDGQFIPCTAVRNPAELPWGAVGADYVVESTGLFTS
                     YEGAAQHLQAGAKRVVISAPTKDADKVKTIVVGVNHDTFDPSSDRIVSNASCTTNCLA
                     PVAKVLHASFGLAEGLMTTVHAVTATQPTVDGPSKKDWRGGRGAGQNIIPASTGAAKA
                     VTLVLPELKGKLTGMAFRVPTPDVSVVDLTFKTEKATTYGDICAAMKAAAEGELKGIL
                     GYTEEAVVSSDFIGDGRSSIFDATAGIQLNANFFKVVAWYDNEWGYSCRVVDLLKLMA
                     AKEGLL"
     misc_feature    complement(37458..38465)
                     /gene="gap1"
                     /locus_tag="tll0043"
                     /note="Glyceraldehyde-3-phosphate
                     dehydrogenase/erythrose-4-phosphate dehydrogenase
                     [Carbohydrate transport and metabolism]; Region: GapA;
                     COG0057"
                     /db_xref="CDD:223135"
     misc_feature    complement(38010..38462)
                     /gene="gap1"
                     /locus_tag="tll0043"
                     /note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
                     binding domain; Region: Gp_dh_N; pfam00044"
                     /db_xref="CDD:215675"
     misc_feature    complement(37521..37994)
                     /gene="gap1"
                     /locus_tag="tll0043"
                     /note="Glyceraldehyde 3-phosphate dehydrogenase,
                     C-terminal domain; Region: Gp_dh_C; pfam02800"
                     /db_xref="CDD:217235"
     gene            complement(38491..38826)
                     /locus_tag="tll0044"
                     /db_xref="GeneID:1010665"
     CDS             complement(38491..38826)
                     /locus_tag="tll0044"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680835.1"
                     /db_xref="GI:22297588"
                     /db_xref="GeneID:1010665"
                     /translation="MLGQITVVELAQRLATEADTLQLIDVREPEEWAIAHLPHFTPLP
                     LSAFPQWSPQICQLFDPDRETLVLCHHGVRSAQMGHWLIQQGFRNVKNIVGGIDAYAA
                     VVDPTLPRY"
     misc_feature    complement(38512..38817)
                     /locus_tag="tll0044"
                     /note="Rhodanese Homology Domain (RHOD); an alpha beta
                     fold domain found duplicated in the rhodanese protein. The
                     cysteine containing enzymatically active version of the
                     domain is also found in the Cdc25 class of protein
                     phosphatases and a variety of proteins...; Region: RHOD;
                     cl00125"
                     /db_xref="CDD:241626"
     misc_feature    complement(38620..38622)
                     /locus_tag="tll0044"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     gene            complement(38879..40426)
                     /gene="ndhB"
                     /locus_tag="tll0045"
                     /db_xref="GeneID:1010666"
     CDS             complement(38879..40426)
                     /gene="ndhB"
                     /locus_tag="tll0045"
                     /note="transfers electrons from NAD(P)H to quinons in the
                     respiratory chain"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 2"
                     /protein_id="NP_680836.1"
                     /db_xref="GI:22297589"
                     /db_xref="GeneID:1010666"
                     /translation="MDLVTLAGQLNAGTILPETILIVTLLVVLLADLIQGRQADRWTP
                     YFAIVGLGGAIATMIPLWTQPATISFFGSFISDHLSLFFRGLIALSALGTILMSIRYV
                     EQTGSSLGEFMTILLTATVGGMFIAGAQELVFIFVALETLSIASYLLTGYTKRDSRSN
                     EAALKYLLIGAASSAIFLYGSSLLYGLSGGHTQLPAIAQALSSESLGLVVALVFVIAG
                     ISFKISAVPFHQWTPDVYEGAPTPVVAFLSVGSKAAGFALAIRFLTLAFPSVTDQWQL
                     IFTVLAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGFVVGTEAGYASMLFYLL
                     VYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF
                     FGKIYLFWAGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSEAVRNYPEV
                     SWSSFGLRPLQVGLVMTVIATSLAGILANPLFNLVNTAVWDVPQLANQPTVMEVAYQA
                     LSPAGKS"
     misc_feature    complement(38891..40426)
                     /gene="ndhB"
                     /locus_tag="tll0045"
                     /note="NAD(P)H-quinone oxidoreductase subunit 2;
                     Provisional; Region: PRK02504"
                     /db_xref="CDD:235044"
     misc_feature    complement(39224..40042)
                     /gene="ndhB"
                     /locus_tag="tll0045"
                     /note="NADH-Ubiquinone/plastoquinone (complex I), various
                     chains; Region: Oxidored_q1; pfam00361"
                     /db_xref="CDD:201180"
     gene            complement(40601..41497)
                     /locus_tag="tll0046"
                     /db_xref="GeneID:1010668"
     CDS             complement(40601..41497)
                     /locus_tag="tll0046"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680837.1"
                     /db_xref="GI:22297590"
                     /db_xref="GeneID:1010668"
                     /translation="MTVVAALPPPLQPGDRLAVAFPSGVLRQEEPFWQGVACWQAQGY
                     EVIVDEAAFAGWGYLAGSDQQRRDRLRHLLQDDSIKGILCGRGGFGATRLLEQWQWPS
                     APPKWLIGFSDITALLWSYAAQGVAGVHGPVLTTLAQEPLWTQQRLFDLVQGKSLDPL
                     WGSGWGGGVVQGRLLVGNLTVATHLLATPDCPPLENVILALEDVAEAPYRIDRMLTQW
                     RRSGALYQIKGIALGRFSRCEDATMEPNFRLIEVLSDRLGDLGIPIVSDLPFGHEGVN
                     AALPVGVAAELDGDRGSLQVLL"
     misc_feature    complement(40640..41434)
                     /locus_tag="tll0046"
                     /note="LD-Carboxypeptidase, a serine protease, includes
                     microcin C7 self immunity protein; Region: Peptidase_S66;
                     cd07025"
                     /db_xref="CDD:132882"
     misc_feature    complement(order(40730..40735,40847..40852,40859..40864,
                     40868..40873,40937..40942,40946..40951,41219..41224))
                     /locus_tag="tll0046"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132882"
     misc_feature    complement(order(40682..40684,40892..40894,41162..41164))
                     /locus_tag="tll0046"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:132882"
     gene            complement(41499..41837)
                     /locus_tag="tll0047"
                     /db_xref="GeneID:1010669"
     CDS             complement(41499..41837)
                     /locus_tag="tll0047"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680838.1"
                     /db_xref="GI:22297591"
                     /db_xref="GeneID:1010669"
                     /translation="MLRPLGIALVLTPIIPGVGFPHGRVAFEQPSVFAEVVLEANSPQ
                     GGLMKTTSNFFIQIPASAGKPLARLEIQQLPSIETVDLLPQGLRGGDRPLGQNVITGR
                     LQFCRNSNFC"
     gene            complement(41841..42398)
                     /gene="fur"
                     /locus_tag="tll0048"
                     /db_xref="GeneID:1010673"
     CDS             complement(41841..42398)
                     /gene="fur"
                     /locus_tag="tll0048"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric uptake regulation protein"
                     /protein_id="NP_680839.1"
                     /db_xref="GI:22297592"
                     /db_xref="GeneID:1010673"
                     /translation="MQTKTGRSSESPMPLYTAAALKAELNEKGWRLTPQRETILNIFQ
                     NLPKGNHLSAEDLYHELRKQGHSISLSTVYRTVKLMSRMGILRELELAEGHKHYELNT
                     MSPHHHHHMVCVQCNRTTEFDNDSILKQALKQTEKYGLQLIDCQLTIYTICPEALRRG
                     YPGLPENWVCSSAIAHGTEPPSRGK"
     misc_feature    complement(41940..42299)
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="Ferric uptake regulator(Fur) and related
                     metalloregulatory proteins; typically iron-dependent,
                     DNA-binding repressors and activators; Region: Fur_like;
                     cd07153"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(42036..42038,42069..42071,42075..42077,
                     42102..42104,42246..42248))
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="metal binding site 2 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(42150..42194)
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="putative DNA binding helix; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(41964..41966,42015..42017,42072..42074,
                     42078..42080))
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="metal binding site 1 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(41943..41969,41973..41981,42006..42011,
                     42057..42065))
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(41940..41942,42051..42053,42060..42062))
                     /gene="fur"
                     /locus_tag="tll0048"
                     /note="structural Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:133478"
     gene            complement(42585..44516)
                     /locus_tag="tll0049"
                     /db_xref="GeneID:1010676"
     CDS             complement(42585..44516)
                     /locus_tag="tll0049"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="NP_680840.1"
                     /db_xref="GI:22297593"
                     /db_xref="GeneID:1010676"
                     /translation="MSTTTLGKHPSQTRPQHENFWRGVLRIANRTFLVGMTFGSAAIG
                     GSLLGLAISFRNLPDVRSLRGYVPSETTHIYDAKGTLLVSLHDEENREVVPLNEISPN
                     LKLAVLAIEDSSFYQHRGINPIGIARALMVNLTSGRTVQGGSTLTMQLVKNLFLSRDR
                     SLSRKVAEAVLAMRLEQIFNKDEILEMYLNQVYWGHNTYGVQTAAQSYFKKNAADLTL
                     AEAAMMAGIIQAPEAYSPFVDFDLAKERQQLVLDRMVELHWITPQEAAAAAQEPIKLG
                     EITSFQRSRSPWITDAVLQELTRQFGREAVIRGGMRVQSSLDLKMQTMAEEAIRRGYD
                     SLQASGVRADQLALAAVDPRTHYVKALVGGVDYSRSQFNRATQALRQPGSAFKPFVYY
                     AAYASGKYTPESVISDSPVQYRDGDGWYVPRNYDGSFMGGMSMRMALAMSRNIPAIVL
                     GQEVGIERVIEICRTLGITSPMLPVVSLPLGAVDLTPLEMAAAYATFANNGWQSPTTT
                     IIQVTDNNGNLLLDHTPRPKLVLDPWAAAAVNNTLQSVITSGTGTAANIGRPAAGKTG
                     TTSSERDIWFVGYVPQLSAAVWAGNDNYAPLGQGATGGGFMAPIWRDFMSQALKDVPV
                     EDFTPMSKFQRPKPPRPKN"
     misc_feature    complement(43752..44285)
                     /locus_tag="tll0049"
                     /note="Transglycosylase; Region: Transgly; pfam00912"
                     /db_xref="CDD:201501"
     misc_feature    complement(42654..44249)
                     /locus_tag="tll0049"
                     /note="penicillin-binding protein, 1A family; Region:
                     PBP_1a_fam; TIGR02074"
                     /db_xref="CDD:233710"
     misc_feature    complement(42672..43469)
                     /locus_tag="tll0049"
                     /note="Penicillin binding protein transpeptidase domain;
                     Region: Transpeptidase; pfam00905"
                     /db_xref="CDD:216183"
     gene            44678..45904
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /db_xref="GeneID:1010677"
     CDS             44678..45904
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /EC_number="6.1.1.1"
                     /note="catalyzes the formation of tyrosyl-tRNA(Tyr) from
                     tyrosine and tRNA(Tyr)"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosyl-tRNA synthetase"
                     /protein_id="NP_680841.1"
                     /db_xref="GI:22297594"
                     /db_xref="GeneID:1010677"
                     /translation="MSSDLEATIARLQRGVVETFPHVPDSVKPEENLWAYLRQTQRPL
                     RIKFGIDPTGSEIHLGHSIVLRKLRQFQDAGHCAVLIIGDFTAQIGDPTGKSEVRKQL
                     TPEEVAANVQTYLEQVRPILDFETPGRLEIRYNSEWLAKLDLRKVLELLGTMTVGQML
                     AKEGFAERYAKETPIFLHEFLYPLMQGYDSVAVAADVELGGTDQKFNIAVGRDLQRHF
                     RLPTVQFGLLMPILVGTDGVQKMSKSLGNYVALTESAASMYSKLEKIPDALVNQYIEL
                     LTDLPLDSLPTHPRDRQKALALAVVSQYHGQELALQTQAELAAIVTQGQTAQAGSIPE
                     YSLGEFQFPVKLTYVLSHTKLCPSSSEARRQIQGGGVRLNGEKITDVDFTLTAPEPYV
                     NQVLQVGKKKFLRFVP"
     misc_feature    44684..45901
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="tyrosyl-tRNA synthetase; Validated; Region:
                     PRK05912"
                     /db_xref="CDD:235645"
     misc_feature    44807..45580
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="catalytic core domain of tyrosinyl-tRNA synthetase;
                     Region: TyrRS_core; cd00805"
                     /db_xref="CDD:173902"
     misc_feature    order(44816..44818,44822..44830,44849..44851,44855..44860,
                     45221..45223,45233..45235,45242..45244,45269..45271,
                     45275..45280,45287..45289,45368..45373,45395..45406)
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="active site"
                     /db_xref="CDD:173902"
     misc_feature    44849..44860
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173902"
     misc_feature    order(44930..44932,44939..44944,45107..45112,45116..45124,
                     45128..45133,45137..45148,45152..45157,45209..45211,
                     45215..45220,45227..45232)
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:173902"
     misc_feature    45395..45409
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173902"
     misc_feature    45722..45895
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cd00165"
                     /db_xref="CDD:238095"
     misc_feature    order(45746..45751,45755..45760,45764..45769,45776..45781,
                     45785..45787,45806..45829,45833..45835)
                     /gene="tyrS"
                     /locus_tag="tlr0050"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     gene            46286..49024
                     /locus_tag="tlr0051"
                     /db_xref="GeneID:1010681"
     CDS             46286..49024
                     /locus_tag="tlr0051"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680842.1"
                     /db_xref="GI:22297595"
                     /db_xref="GeneID:1010681"
                     /translation="MTLGLTPKFVKIFLFVGLMLLSTSLAVIFPLNSVEGLGSGVTKT
                     VLDNGLTVLIKEIPTAPVVSLQVWYRVGSRHEPKGENGIAHQLEHLMFKGTQSRPVQF
                     GQLFYALGSSSNAFTSYDMTAYHHTVRADQLEPLLILEADRLRHTLITPDALESEKRV
                     VISELQGYENSPEYRLSRAVMAALYPKHPYGLPVGGTASDVEQLTLAAVKSFYQQYYR
                     PDNAVVVIAGNVRAARALELVKSTFGAIPQPPEPLISPPLPPPGAVSGQRIRLREPGS
                     APLLQILVPIPGITHPDQAALDVLDMLLSGGRSSYFYQELMETGQASSAYSYVAALQE
                     GGWFEMGAIASPDQSLETIEQSIGKMLQQLAERPLSLAELQRAKQQLKANFILRNRDI
                     DAQASQLANDETLTGDYRFSDRHLAAIEKVTAADVQRVVQTYFGRDRWIVGEFIPSEF
                     ADVELSGRPAVQTTAHNLIGEPVDPQTIAAYLPQGSAQAAPAVKNNGVETFTLENGLR
                     VLLLVDRSTPTVTLAGRIDAGTAYDLLTQPGVANLTAANLLNGTRTKTALTLAQTLED
                     RGISLEFSAFRDGVDVEGYALASELPTLLATLGEVLQEATFPEAEFKLSQQRYLTALG
                     LEADDPVRWGRRVLQETLYPAHHPLHPFATPESVQAIQRQDLLNFYRAAYRPDRTILT
                     LVGDFDPLAVRSRLKDIFGPWQPPTAPLSLTFPAVSPPPQTLFRNAVIAGKSQAITYL
                     GTPGIDRRHPRFYAAMLMNHILGGDTLASRLGTEIRDRQGLTYGIYSFFTASRQAGPF
                     MIQLQTAPEDTAKAIQATLQLLREARRQGFTAAELEAAKRSLSNTYLVELANVDVVAR
                     TLLANASVDLPPQELQQFSDRLQQVSLAEVNQALRELIDPERLVIVTAGPAVSFSP"
     misc_feature    46403..47590
                     /locus_tag="tlr0051"
                     /note="Predicted Zn-dependent peptidases [General function
                     prediction only]; Region: PqqL; COG0612"
                     /db_xref="CDD:223685"
     misc_feature    46439..46879
                     /locus_tag="tlr0051"
                     /note="Insulinase (Peptidase family M16); Region:
                     Peptidase_M16; pfam00675"
                     /db_xref="CDD:216056"
     misc_feature    46895..47428
                     /locus_tag="tlr0051"
                     /note="Peptidase M16 inactive domain; Region:
                     Peptidase_M16_C; pfam05193"
                     /db_xref="CDD:218490"
     misc_feature    47729..49006
                     /locus_tag="tlr0051"
                     /note="Predicted Zn-dependent peptidases [General function
                     prediction only]; Region: PqqL; COG0612"
                     /db_xref="CDD:223685"
     misc_feature    47807..>48124
                     /locus_tag="tlr0051"
                     /note="Insulinase (Peptidase family M16); Region:
                     Peptidase_M16; pfam00675"
                     /db_xref="CDD:216056"
     misc_feature    48263..48805
                     /locus_tag="tlr0051"
                     /note="Peptidase M16 inactive domain; Region:
                     Peptidase_M16_C; pfam05193"
                     /db_xref="CDD:218490"
     gene            49029..49751
                     /gene="ccdA"
                     /locus_tag="tlr0052"
                     /db_xref="GeneID:1010682"
     CDS             49029..49751
                     /gene="ccdA"
                     /locus_tag="tlr0052"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis"
                     /protein_id="NP_680843.1"
                     /db_xref="GI:22297596"
                     /db_xref="GeneID:1010682"
                     /translation="MASLSLGLYQLEQWADQWVTGQLRDLTPISGGIVFLAGLLTSLT
                     PCTLSMLPITVGYIAGYASKQNSSGLRQSLWFALGLATTLTVLGITATLAGRIYGQVG
                     WGLTLGVSLVAILMGLNLLDALPLSFPRSRFLEELPDRVPASLQAYTLGATFGIVAAP
                     CSTPVLATLLAWVATTQNLWVGAGLLLAYTTGYVVPLMIVGTFSGALQKLLALRQWSG
                     WITRISGVLLIAFGVIALATRL"
     misc_feature    49101..49736
                     /gene="ccdA"
                     /locus_tag="tlr0052"
                     /note="Cytochrome c biogenesis protein [Posttranslational
                     modification, protein turnover, chaperones]; Region: CcdA;
                     COG0785"
                     /db_xref="CDD:223856"
     misc_feature    49128..49736
                     /gene="ccdA"
                     /locus_tag="tlr0052"
                     /note="Cytochrome C biogenesis protein transmembrane
                     region; Region: DsbD; pfam02683"
                     /db_xref="CDD:217183"
     gene            50147..50869
                     /locus_tag="tlr0053"
                     /db_xref="GeneID:1010684"
     CDS             50147..50869
                     /locus_tag="tlr0053"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     ATP-binding protein"
                     /protein_id="NP_680844.1"
                     /db_xref="GI:22297597"
                     /db_xref="GeneID:1010684"
                     /translation="MSLLEVSDVYAGYIPDVDILRGVNFRLEAGELVAVIGPNGAGKS
                     TLAKTIAGLLRPRLGTITLAGEDITYLRPNQIVKKGIGYVPQIANVFPSLTIEENLEM
                     GAFIKSGNLKGLKGRVYETFPRLAERRHQRAGTLSGGERQMLAMGRAMMLDPQIMVLD
                     EPSAALSPALVNDVFAKIKEINAQGTAIILVEQNARKALAMSDRGYVLEMGKDRYEGL
                     GSELLNDPKVGELYLGIVRAEP"
     misc_feature    50147..50851
                     /locus_tag="tlr0053"
                     /note="ABC-type branched-chain amino acid transport
                     systems, ATPase component [Amino acid transport and
                     metabolism]; Region: LivF; COG0410"
                     /db_xref="CDD:223487"
     misc_feature    50156..50821
                     /locus_tag="tlr0053"
                     /note="ATP-binding cassette domain of branched-chain amino
                     acid transporter; Region: ABC_TM1139_LivF_branched;
                     cd03224"
                     /db_xref="CDD:213191"
     misc_feature    50255..50278
                     /locus_tag="tlr0053"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213191"
     misc_feature    order(50264..50269,50273..50281,50402..50404,50624..50629,
                     50723..50725)
                     /locus_tag="tlr0053"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213191"
     misc_feature    50393..50404
                     /locus_tag="tlr0053"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213191"
     misc_feature    50552..50581
                     /locus_tag="tlr0053"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213191"
     misc_feature    50612..50629
                     /locus_tag="tlr0053"
                     /note="Walker B; other site"
                     /db_xref="CDD:213191"
     misc_feature    50636..50647
                     /locus_tag="tlr0053"
                     /note="D-loop; other site"
                     /db_xref="CDD:213191"
     misc_feature    50711..50731
                     /locus_tag="tlr0053"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213191"
     gene            complement(50866..51441)
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /db_xref="GeneID:1010687"
     CDS             complement(50866..51441)
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /EC_number="2.7.4.8"
                     /note="Essential for recycling GMP and indirectly, cGMP"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="NP_680845.1"
                     /db_xref="GI:22297598"
                     /db_xref="GeneID:1010687"
                     /translation="MTSATPQPGQLIVITGPSGVGKGTLLRQLRQRHPELALSVSATT
                     RPPRPTEVAGVDYYFVSVEEFKAMIAAGQLLEWAEFAGHYYGTPRQPLVQLIAQGKTV
                     ILEIELQGARQVRQSYPQARHIFILPPSLAELEHRLRSRGQDSEEAIARRLAQAETEI
                     AAAPEFDVQIVNDDLEKSLIALETAIFSPAP"
     misc_feature    complement(50878..51417)
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /note="Guanylate kinase [Nucleotide transport and
                     metabolism]; Region: Gmk; COG0194"
                     /db_xref="CDD:223272"
     misc_feature    complement(50893..51411)
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
                     /db_xref="CDD:238026"
     misc_feature    complement(order(51187..51189,51202..51204,51271..51273,
                     51298..51300,51307..51309,51328..51330,51376..51378,
                     51394..51396))
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    complement(order(51376..51378,51394..51396))
                     /gene="gmk"
                     /locus_tag="tll0054"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     gene            51518..52021
                     /locus_tag="tlr0055"
                     /db_xref="GeneID:1010688"
     CDS             51518..52021
                     /locus_tag="tlr0055"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transport ExbD like"
                     /protein_id="NP_680846.1"
                     /db_xref="GI:22297599"
                     /db_xref="GeneID:1010688"
                     /translation="MAVKIHLPTESDNVRIEMLPLIDVVFCILTFFILAAVSLTRQQA
                     ITLNLPKASTSQAQLQKMFVVSIDPAGQLFVDKDPVNRSELYQRLATYLKTHPEGLVI
                     LRASQVVSYNEVIQVLDLLRSLGGNRVALATQPVERPVLSTEAPPSSPNPLPSLPANE
                     QPLPSNP"
     misc_feature    51518..51922
                     /locus_tag="tlr0055"
                     /note="Biopolymer transport protein [Intracellular
                     trafficking and secretion]; Region: ExbD; COG0848"
                     /db_xref="CDD:223917"
     misc_feature    51548..51922
                     /locus_tag="tlr0055"
                     /note="Biopolymer transport protein ExbD/TolR; Region:
                     ExbD; pfam02472"
                     /db_xref="CDD:217057"
     gene            52031..52954
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /db_xref="GeneID:1010689"
     CDS             52031..52954
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="Era; Escherichia coli Ras-like protein; Bex;
                     Bacillus Era-complementing segment; essential protein in
                     Escherichia coli that is involved in many cellular
                     processes; GTPase; binds the cell membrane through
                     apparent C-terminal domain; mutants are arrested during
                     the cell cycle; Streptococcus pneumoniae Era binds to RNA
                     and Escherichia coli Era binds 16S rRNA and 30S ribosome"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein Era"
                     /protein_id="NP_680847.1"
                     /db_xref="GI:22297600"
                     /db_xref="GeneID:1010689"
                     /translation="MEAIASIPVAPAGFRSGFVALVGRPNVGKSTLFNHLLGQKVAIT
                     SPVAQTTRNRLRGILTTATAQFIFVDTPGIHKPHHRLGEVLVHNAKGVLKRVDAIVFV
                     VDAASPPGRGDRYVADLLTTTPAPVLMAINKIDLLPPEAREQRQQDYQTLGPWPAYPC
                     SALTGEGVGLLQSAIAAQLPLGPYYYPPDMVTDQPERFIMAELIREQILHHTREEVPH
                     SVAVTIEQVQQERNLTRVHAVIYVERPTQKAIIIGQGGQLLKQIGTAARQEIETLIGG
                     KIYLELFVKVRPRWRQDRLRLAELGYRIEKD"
     misc_feature    52064..52936
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="GTPase Era; Reviewed; Region: era; PRK00089"
                     /db_xref="CDD:234624"
     misc_feature    52070..52567
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="E. coli Ras-like protein (Era) is a multifunctional
                     GTPase; Region: Era; cd04163"
                     /db_xref="CDD:206726"
     misc_feature    52097..52120
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="G1 box; other site"
                     /db_xref="CDD:206726"
     misc_feature    order(52103..52123,52163..52165,52175..52183,52247..52249,
                     52424..52429,52433..52435,52511..52516)
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206726"
     misc_feature    order(52142..52144,52148..52192)
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206726"
     misc_feature    52181..52183
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="G2 box; other site"
                     /db_xref="CDD:206726"
     misc_feature    order(52235..52252,52310..52315)
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206726"
     misc_feature    52238..52249
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="G3 box; other site"
                     /db_xref="CDD:206726"
     misc_feature    52424..52435
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="G4 box; other site"
                     /db_xref="CDD:206726"
     misc_feature    52511..52519
                     /gene="era"
                     /locus_tag="tlr0056"
                     /gene_synonym="bex; rbaA; sdgE; yqfH"
                     /note="G5 box; other site"
                     /db_xref="CDD:206726"
     gene            52959..53561
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /db_xref="GeneID:1010240"
     CDS             52959..53561
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein G"
                     /protein_id="NP_680848.1"
                     /db_xref="GI:22297601"
                     /db_xref="GeneID:1010240"
                     /translation="METVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQ
                     EDAQFLVRSQALPPERILGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVES
                     GGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPYVGADL
                     EVMKRDTLKMRGDRPYVMTNLKTGLGLDQVIAFLTVHLAA"
     misc_feature    52980..53531
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="Rat sarcoma (Ras)-like superfamily of small
                     guanosine triphosphatases (GTPases); Region:
                     Ras_like_GTPase; cd00882"
                     /db_xref="CDD:206648"
     misc_feature    52989..53012
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="G1 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(52995..53015,53160..53162,53400..53405,53409..53411,
                     53496..53504)
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206648"
     misc_feature    53088..53090
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="G2 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    53100..53108
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206648"
     misc_feature    53151..53162
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="G3 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(53157..53162,53244..53249)
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206648"
     misc_feature    53400..53411
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="G4 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    53496..53504
                     /gene="ureG"
                     /locus_tag="tlr0057"
                     /note="G5 box; other site"
                     /db_xref="CDD:206648"
     gene            53598..54584
                     /locus_tag="tlr0058"
                     /db_xref="GeneID:1010498"
     CDS             53598..54584
                     /locus_tag="tlr0058"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="NP_680849.1"
                     /db_xref="GI:22297602"
                     /db_xref="GeneID:1010498"
                     /translation="MTDHHHCYCNNLPVKIVVSVSSGRKGMMNDAWVRGAMVGATGLV
                     VMALPAVAQVQPRSGEEINEIARNITVLIVGKDSHGSGAIISRSGSTYYVLTAKHVVN
                     RKDNYRVIPIDQQAYAVDFNKIKFLPNTDLAIVEFTSEKKDYQVATLTNSDFVKEGSQ
                     VFVSGWPQPGGSGQLVRQFTDGRISGFLIEPIDGYKMIYTNVTRRGMSGGPVLDSAGR
                     VVGVHGLGDTEDPRSLERQGLNPEAAASIARLIKPGFNYAIPINTFLAGAPAAGVFLS
                     LQVDNQAIASGTAPVVVTVPSQPDSRDRIENINLILNAVNTGVDVLRSIFPF"
     misc_feature    53835..54263
                     /locus_tag="tlr0058"
                     /note="Trypsin-like peptidase domain; Region: Trypsin_2;
                     pfam13365"
                     /db_xref="CDD:222077"
     gene            54653..55396
                     /locus_tag="tlr0059"
                     /db_xref="GeneID:1010497"
     CDS             54653..55396
                     /locus_tag="tlr0059"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680850.1"
                     /db_xref="GI:22297603"
                     /db_xref="GeneID:1010497"
                     /translation="MRIKDMAIQFGIRPVAVPLSLAAVMIPAIAHASWASYRPPANIG
                     RPGNREGAATRIARPMLLRESTGDTESCLTEPKQTVVALVPRDNNGLSSTPTPTLYSF
                     IPANRGATLTLTLRAPQGTEVYRQERPAPTAAGIIGWPVENVSLKSGVDYQWQLTLTC
                     TNGTTVLKTVSWFRPVPLSQSQQQRIVQAKDAVDAFAMAGYWYDALNQLAKQRLAQPE
                     NAQLQQKWQALLQSSPVQLSNVADQPLLP"
     misc_feature    54794..55390
                     /locus_tag="tlr0059"
                     /note="Domain of Unknown Function (DUF928); Region:
                     DUF928; pfam06051"
                     /db_xref="CDD:218874"
     gene            complement(55378..56664)
                     /locus_tag="tll0060"
                     /db_xref="GeneID:1010495"
     CDS             complement(55378..56664)
                     /locus_tag="tll0060"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RAD32"
                     /protein_id="NP_680851.1"
                     /db_xref="GI:22297604"
                     /db_xref="GeneID:1010495"
                     /translation="MVRFLHVADVHLGYNKYRQDNPSRMLDFFRAFDSALETYAIQAQ
                     VDFVLIAGDLFEERMITPGILNQAEYVLDKVRSAGIPVLAIEGNHDNCPYGVKSNWLR
                     YLCEKDYLYLLEPDETGTLQPWDPETARGGYVDLPCGVRVIGSQWYGASAPRAIQQLA
                     RQIQALPPAAGATILLFHHGLEGQVCRYQGALRYNELLPLRQAGVDYLALGHIHRHYA
                     VEDWIFNPGSIEANSIQENQQQNPRGVLLVNLDQGPPQAELKRDYWQRPIHRYTLTLT
                     PSDTVSDVESQLQQLVQRHRSDMAEAIVEVTLKGEVGFERGELSVRSLQGQLQEAAAA
                     FIFRLGFAATAVAYQTYRDGTAASPPRAQIEEQVFTDLLASVAEYRDRAQPLAKALMR
                     MKEDLLQPNANIPDLYQWLASLSLESEGWEDQGRRG"
     misc_feature    complement(55963..56658)
                     /locus_tag="tll0060"
                     /note="Mre11 nuclease, N-terminal metallophosphatase
                     domain; Region: MPP_Mre11_N; cd00840"
                     /db_xref="CDD:163616"
     misc_feature    complement(56020..56658)
                     /locus_tag="tll0060"
                     /note="Calcineurin-like phosphoesterase; Region:
                     Metallophos; pfam00149"
                     /db_xref="CDD:215750"
     misc_feature    complement(order(56023..56031,56131..56133,56398..56403,
                     56506..56508,56632..56634,56638..56640))
                     /locus_tag="tll0060"
                     /note="active site"
                     /db_xref="CDD:163616"
     misc_feature    complement(order(56023..56025,56029..56031,56131..56133,
                     56401..56403,56506..56508,56632..56634,56638..56640))
                     /locus_tag="tll0060"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:163616"
     misc_feature    complement(order(56218..56223,56377..56382,56386..56388,
                     56497..56499,56608..56628))
                     /locus_tag="tll0060"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:163616"
     misc_feature    complement(55600..>55827)
                     /locus_tag="tll0060"
                     /note="Domains similar to the eukaryotic reeler domain and
                     bacterial cohesins; Region: Reeler_cohesin_like; cl14606"
                     /db_xref="CDD:246671"
     gene            complement(56678..58132)
                     /locus_tag="tll0061"
                     /db_xref="GeneID:1010490"
     CDS             complement(56678..58132)
                     /locus_tag="tll0061"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680852.1"
                     /db_xref="GI:22297605"
                     /db_xref="GeneID:1010490"
                     /translation="MANNWELGRFLDTLRFFQTLPFVGTLEPLRPVLLPLLPDLFKPP
                     AYRGSGLVVVMGATGRTGQAVVKTLLGQGYAVRSVVRDRAKAERLLPPDPFLEIVVAD
                     VTQPLPADVLQGSRAVINCVGAKVQPNPNAPPPGLEIVGASPEAVEFEGMRHLLERAQ
                     PYFQSQPNTYPLFDYRYPTPPLKEVWGALDDVVMGGVSASQFYLKDHSALFTGVVSTA
                     NSGGFVSIRTRNLTPPLNLQGYTGIQLRVRGDGQRYKFFLRSDPAWDGVGYAISFDTV
                     ADQWITVELPFSHFIPVFRARTAPSAPPLNVGQIYSLQLMLSKFEYDGALNPRFRPGT
                     LSLEIESIQAYGNLPLPRIIQVSSAGVTRPQQANLDPKEQPLAVQYNKELGGLLTWKL
                     AAENMLRQSGLPYTIVRPCGLTDQSGGRELRLDQGDRLMGSLSREDLAAFLASLLNLP
                     MACYRTMEVVATDQAAEAYPNWAVRLAQLASDRP"
     misc_feature    complement(<57653..57979)
                     /locus_tag="tll0061"
                     /note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
                     NADB_Rossmann; cl09931"
                     /db_xref="CDD:245206"
     misc_feature    complement(<57653..57979)
                     /locus_tag="tll0061"
                     /note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
                     /db_xref="CDD:222146"
     misc_feature    complement(order(57764..57772,57887..57895,57950..57952,
                     57956..57961,57965..57967))
                     /locus_tag="tll0061"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187535"
     misc_feature    complement(57116..57616)
                     /locus_tag="tll0061"
                     /note="Complex I intermediate-associated protein 30
                     (CIA30); Region: CIA30; pfam08547"
                     /db_xref="CDD:219896"
     misc_feature    complement(56792..>57082)
                     /locus_tag="tll0061"
                     /note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
                     /db_xref="CDD:222146"
     misc_feature    complement(56744..>57079)
                     /locus_tag="tll0061"
                     /note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
                     NADB_Rossmann; cl09931"
                     /db_xref="CDD:245206"
     misc_feature    complement(order(56960..56962,56972..56974,57059..57061))
                     /locus_tag="tll0061"
                     /note="active site"
                     /db_xref="CDD:187535"
     gene            complement(58122..58700)
                     /locus_tag="tll0062"
                     /db_xref="GeneID:1010486"
     CDS             complement(58122..58700)
                     /locus_tag="tll0062"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680853.1"
                     /db_xref="GI:22297606"
                     /db_xref="GeneID:1010486"
                     /translation="MAGLYDLGAHELLEVKTWPLGRELASQLHPCLRELMAPYPWGEL
                     GAIAIGCGPGSFTGTRLGVVTARILAQQLEVPLLGLSSLGTMAWHARNELLDADGVVS
                     RRAQQGHQYLGIYRYQGGRLHTLWGDRLVTDSEAEALLATWPHPYKHLSPPHPSDHGR
                     ALLTWAAQQWHDTLRAGEKLPHWSSVVPLYGK"
     misc_feature    complement(58125..58670)
                     /locus_tag="tll0062"
                     /note="tRNA threonylcarbamoyl adenosine modification
                     protein YeaZ; Region: T6A_YeaZ; TIGR03725"
                     /db_xref="CDD:234332"
     misc_feature    complement(<58269..58634)
                     /locus_tag="tll0062"
                     /note="Glycoprotease family; Region: Peptidase_M22;
                     pfam00814"
                     /db_xref="CDD:216132"
     gene            complement(58741..58911)
                     /locus_tag="tsl0063"
                     /db_xref="GeneID:1010483"
     CDS             complement(58741..58911)
                     /locus_tag="tsl0063"
                     /codon_start=1
                     /transl_table=11
                     /product="high light-inducible protein"
                     /protein_id="NP_680854.1"
                     /db_xref="GI:22297607"
                     /db_xref="GeneID:1010483"
                     /translation="MRYTTDEGGRLNNFAIEPKVYQAQPWTPQQKVRAALLVGGGLLL
                     VAGLVAIAVGVS"
     gene            complement(58964..60127)
                     /locus_tag="tll0064"
                     /db_xref="GeneID:1010482"
     CDS             complement(58964..60127)
                     /locus_tag="tll0064"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="NP_680855.1"
                     /db_xref="GI:22297608"
                     /db_xref="GeneID:1010482"
                     /translation="MSLVPILLTLLSCTGALFYIVAGVLTWQFFTNFTKEKTAPLETL
                     PAVSILVPVCGLEARAWQNWSSLCEQNYPVYEVLFGVQSPNDPAIPVLQAICETYPDR
                     ARWYLCHPIRGINLKASNVSQLFAHARYDVVVETDSDVRVRSNYLATLTQPLADPQVG
                     VVTCGYIDHQPQRLGAAFVALGRCLDFIPSVLVARRLDGGLRFAIGPTVLLRREVLEK
                     IGGFEIALNRIGEDYQLGYAAWRAGYRVELSTYILDNDCGNDSLLSAVQRELRWSRSI
                     RSNRGNQYFGMVFMFGTVYSALLWGLFPAPWTLGLFLTVQGIRWLQAVISILLMGTPR
                     LLLWLWLLPLRDVMSFLIWLGGCFGNRIYWRGRWLQVNRHGQLQEIVKDSQEF"
     misc_feature    complement(58988..60112)
                     /locus_tag="tll0064"
                     /note="hopanoid biosynthesis associated glycosyl
                     transferase protein HpnI; Region: HpnI; TIGR03472"
                     /db_xref="CDD:132512"
     misc_feature    complement(59300..59995)
                     /locus_tag="tll0064"
                     /note="Glucosylceramide synthase catalyzes the first
                     glycosylation step of glycosphingolipid synthesis; Region:
                     Glucosylceramide_synthase; cd02520"
                     /db_xref="CDD:133012"
     misc_feature    complement(order(59711..59713,59966..59968,59972..59974))
                     /locus_tag="tll0064"
                     /note="ligand binding site; other site"
                     /db_xref="CDD:133012"
     gene            complement(60124..60957)
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /db_xref="GeneID:1010474"
     CDS             complement(60124..60957)
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /note="functions in thiamine (vitamin B1) biosynthesis; in
                     Bacillus subtilis this enzyme catalyzes the formation of
                     thiazole from dehydroxyglycine and
                     1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="NP_680856.1"
                     /db_xref="GI:22297609"
                     /db_xref="GeneID:1010474"
                     /translation="MVSAPPAEQLIEDAPLTIAGRQFRSRLMTGTGKYRSIADLQASV
                     AASGCEIVTVAVRRVQTNAPGHEGLVDALDWSKLWLLPNTAGCQTAEEAIRVARLGRE
                     MAKLLGQEDNNFVKLEVIPDPKYLLPDPFGTLAAAEQLVKEGFAVLPYINADPLLAKR
                     LEEVGCVTVMPLASPIGSGQGLRNAANIQIIIEQASVPVVVDAGIGTPSEAAAAMELG
                     ADALLINTAIAEAGNAPAMAKAMALATTAGRLAYLAGRIPVKAYASASSPLSGTITAR
                     S"
     misc_feature    complement(60151..60912)
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /note="Thiazole synthase (ThiG) is the tetrameric enzyme
                     that is involved in the formation of the thiazole moiety
                     of thiamin pyrophosphate, an essential ubiquitous cofactor
                     that plays an important role in carbohydrate and amino
                     acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
                     /db_xref="CDD:240079"
     misc_feature    complement(order(60745..60747,60754..60756,60793..60795))
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /note="ThiS interaction site; other site"
                     /db_xref="CDD:240079"
     misc_feature    complement(order(60352..60354,60604..60606,60610..60612))
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /note="putative active site [active]"
                     /db_xref="CDD:240079"
     misc_feature    complement(order(60154..60156,60160..60168,60172..60174,
                     60178..60183,60187..60201,60205..60210,60217..60219,
                     60238..60240,60247..60252,60259..60267,60280..60282,
                     60307..60312,60319..60321,60331..60339,60379..60381,
                     60391..60393,60409..60411,60418..60426,60478..60483,
                     60490..60498,60502..60504,60571..60579,60586..60588,
                     60595..60597))
                     /gene="thiG"
                     /locus_tag="tll0065"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240079"
     gene            61076..61543
                     /locus_tag="tlr0066"
                     /db_xref="GeneID:1010473"
     CDS             61076..61543
                     /locus_tag="tlr0066"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680857.1"
                     /db_xref="GI:22297610"
                     /db_xref="GeneID:1010473"
                     /translation="MQHWCMAHIGNNAAIQAADRLLRQYGFDLDGSSVEVILDRWLRH
                     FPPRWIRLALIEALYLGRYKAISVEQILELWQRREQPIYHFNSEFEAIICQSLPLSVP
                     EAPPSRLAETPSNTGISEFHPDLGSDPFVSKLTSIVQQWQSQDFLVEQGDRSS"
     gene            61591..62127
                     /gene="ribH"
                     /locus_tag="tlr0067"
                     /db_xref="GeneID:1010471"
     CDS             61591..62127
                     /gene="ribH"
                     /locus_tag="tlr0067"
                     /note="RibE; 6,7-diimethyl-8-ribityllumazine synthase;
                     DMRL synthase; lumazine synthase; beta subunit of
                     riboflavin synthase; condenses
                     5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione
                     with L-3,4-dihydrohy-2-butanone-4-phosphate to generate
                     6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then
                     uses 2 molecules of DMRL to produce riboflavin (vitamin
                     B12); involved in the last steps of riboflavin
                     biosynthesis; forms a 60mer (icosahedral shell) in both
                     Bacillus subtilis and Escherichia coli; in Bacillus
                     subtilis this 60mer is associated with the riboflavin
                     synthase subunit (alpha) while in Escherichia coli it is
                     not"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="NP_680858.1"
                     /db_xref="GI:22297611"
                     /db_xref="GeneID:1010471"
                     /translation="MAVFEGTYQVLGTPRFGIVISRFNDLITTKLLEGCQDCLRRHGV
                     DPNPHGSQVDYAWVPGSFEIPLVAAQLAATRRYAAIICLGAVIRGQTPHFDYVAAEVT
                     KGIATASMQTGVPIIYGILTTDTMQQALERAGIKSNKGWEYALNALEMANLMQTLPSA
                     INPPTTKLSSSTRILTDG"
     misc_feature    61636..62043
                     /gene="ribH"
                     /locus_tag="tlr0067"
                     /note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
                     synthase, LS), catalyzes the penultimate step in the
                     biosynthesis of riboflavin (vitamin B2); type-I; Region:
                     Lumazine_synthase-I; cd09209"
                     /db_xref="CDD:187742"
     misc_feature    order(61639..61641,61657..61659,61756..61767,61774..61779,
                     61783..61791,61795..61803,61807..61809,61819..61821,
                     61852..61854,61858..61863,61867..61869,61873..61878,
                     61882..61890,61894..61902,61906..61920,61927..61932,
                     61942..61944,61948..61950,61954..61956,61960..61962,
                     61972..61974,61984..61986,62005..62007,62014..62016,
                     62026..62028,62035..62040)
                     /gene="ribH"
                     /locus_tag="tlr0067"
                     /note="homopentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187742"
     misc_feature    order(61657..61662,61768..61779,61840..61857,61861..61863,
                     61867..61872,61939..61953,61984..61986,62005..62007,
                     62014..62016)
                     /gene="ribH"
                     /locus_tag="tlr0067"
                     /note="active site"
                     /db_xref="CDD:187742"
     gene            complement(62148..62444)
                     /locus_tag="tsl0068"
                     /db_xref="GeneID:1010467"
     CDS             complement(62148..62444)
                     /locus_tag="tsl0068"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680859.1"
                     /db_xref="GI:22297612"
                     /db_xref="GeneID:1010467"
                     /translation="MTPTTNGTGTTVSDEGALILMTAFYGNLRTAPIKAEALRQPQLA
                     MIHQQVVVEESHRHSAGLWGALSIPLPQAVQTRGGRLLSHASFWAAFTMIGSPW"
     misc_feature    complement(62157..>62411)
                     /locus_tag="tsl0068"
                     /note="CHAT domain; Region: CHAT; cl17868"
                     /db_xref="CDD:248422"
     gene            62718..63740
                     /gene="asd"
                     /locus_tag="tlr0069"
                     /db_xref="GeneID:1010464"
     CDS             62718..63740
                     /gene="asd"
                     /locus_tag="tlr0069"
                     /EC_number="1.2.1.11"
                     /note="catalyzes the formation of 4-aspartyl phosphate
                     from aspartate 4-semialdehyde"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="NP_680860.1"
                     /db_xref="GI:22297613"
                     /db_xref="GeneID:1010464"
                     /translation="MVLAQGLRVGILGATGAVGTEILAILAERLFPVAELRLLASPRS
                     AGQTLSFRETVLPVEAVSEQTLKGLDLILASAGASVSRQWLPIALKGGAIAIDNSSAY
                     RMEPNVPLVVPEVNPDDLKTHQGIIANPNCTTILMTVALWPLHQVRPIRRIVVATYQS
                     ASGAGAKAMQELKDQALDILKGQPPRTEVFPYPLAFNLFPHNSPLNEQGYCQEEMKMV
                     NETRKIFHAPELRLTATCVRVPVLRAHSEALNVEFAEPFPVQEARDRLQKAPGVQFVE
                     DWQRNYFPMPLEATGKDAVLVGRLRQDISAPNALELWLCGDQIRKGAALNAVQIAESL
                     IAQGLL"
     misc_feature    62733..63722
                     /gene="asd"
                     /locus_tag="tlr0069"
                     /note="aspartate-semialdehyde dehydrogenase; Provisional;
                     Region: PRK14874"
                     /db_xref="CDD:237845"
     misc_feature    62739..63029
                     /gene="asd"
                     /locus_tag="tlr0069"
                     /note="Semialdehyde dehydrogenase, NAD binding domain;
                     Region: Semialdhyde_dh; smart00859"
                     /db_xref="CDD:214863"
     gene            complement(63777..64613)
                     /locus_tag="tll0070"
                     /db_xref="GeneID:1010463"
     CDS             complement(63777..64613)
                     /locus_tag="tll0070"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680861.1"
                     /db_xref="GI:22297614"
                     /db_xref="GeneID:1010463"
                     /translation="MAAAELVQKWLSARDWVRVRADLRGKTTFIAWQGAVYSFVPQER
                     RRHLFNILGMSAARCLPHPEGGWYFLSRELTFYLDPENGSLCDRWHNPWIGAVVPVIP
                     VANDPVQGLFRREVPAQVGEQTTTFQFDLFPYYDNPLASDQRFQAYSPQPIYQAAELF
                     KLTVATADLQQDTPTITNVHLCWSRIGPWLPWMKMGDRPGYLIYSATGCKALTVEDLP
                     PLLQEQLERLPQYREAPREYREGADMTSWLYFQEHFEAYLEKLGEPSPDLGRSPPEPT
                     DQ"
     misc_feature    complement(63849..64544)
                     /locus_tag="tll0070"
                     /note="Protein of unknown function (DUF1838); Region:
                     DUF1838; pfam08894"
                     /db_xref="CDD:220062"
     gene            complement(64616..65293)
                     /locus_tag="tll0071"
                     /db_xref="GeneID:1010461"
     CDS             complement(64616..65293)
                     /locus_tag="tll0071"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680862.1"
                     /db_xref="GI:22297615"
                     /db_xref="GeneID:1010461"
                     /translation="MLRALHPGILTSLVLISTTAAITLVTAFIGYHLGRDSLRGVSQP
                     VVNPILGSAVKTKDQTQGERSPILDEAQIIAQTKARIAEMTEGSSDRKIVPAPTTANE
                     PPAAEPAVSRTLPIVAEDQGVRLEISRVDTLGQDLALQVSLKNDSSQGVQFIYTFLEI
                     TNDKGDLLSALTEGLPTELPAGSDLVKGTILIPKSLLNNTKTLTLRLASYPNQDVQLQ
                     AANIPVE"
     gene            complement(65298..66485)
                     /locus_tag="tll0072"
                     /db_xref="GeneID:1010459"
     CDS             complement(65298..66485)
                     /locus_tag="tll0072"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680863.1"
                     /db_xref="GI:22297616"
                     /db_xref="GeneID:1010459"
                     /translation="MLRAMSQSAASGHWWNRLSIASRFLIIGLAGPILTLNFWAFATV
                     LKFFGPLVAVLVLASLFAFLLNYPVRWMEEQGNPRGPSAIFVFLLALVLIAIIALVVV
                     PNLFNQAQQLIARLPEWFNSSQRRLLEFGQWVDSLNLPVTVDVDALANQLLEKLKDQL
                     QSLAREALNLILGTLSSAVDVLINLILTVVLTFYLLQHGDELWNGLLSWLPNTVRPTV
                     SETIRRSFESYFIGQLVLGLCMGIGLTTIFIFLKVPYGLLFGVIIGVMALVPFGGTVG
                     IISISLLVALQDVWLSLKVAGFAFLYQQFLENVVAPRIIGSFTGLNPVWVFLAILTGA
                     RASGLVGVLIAVPIAVVIKTFLVSVRSRLNSEEEADATVALPNHPPPVLPASSSMKPS
                     SVE"
     misc_feature    complement(65418..66419)
                     /locus_tag="tll0072"
                     /note="Predicted permease, member of the PurR regulon
                     [General function prediction only]; Region: yhhT; COG0628"
                     /db_xref="CDD:223701"
     misc_feature    complement(65418..66404)
                     /locus_tag="tll0072"
                     /note="Domain of unknown function DUF20; Region: UPF0118;
                     pfam01594"
                     /db_xref="CDD:216594"
     gene            complement(66470..67834)
                     /gene="murD"
                     /locus_tag="tll0073"
                     /db_xref="GeneID:1010456"
     CDS             complement(66470..67834)
                     /gene="murD"
                     /locus_tag="tll0073"
                     /EC_number="6.3.2.9"
                     /note="UDP-N-acetylmuramoylalanine--D-glutamate ligase;
                     involved in peptidoglycan biosynthesis; cytoplasmic;
                     catalyzes the addition of glutamate to the nucleotide
                     precursor UDP-N-acetylmuramoyl-L-alanine during cell wall
                     formation"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
                     synthetase"
                     /protein_id="NP_680864.1"
                     /db_xref="GI:22297617"
                     /db_xref="GeneID:1010456"
                     /translation="MPTVHVIGLGRSGIAAARLLKRQGWQVEVSDRRQTPALQSQQQL
                     LQAEGIPVQLNYDFDLQTLISVGLRVPDEIVISPGVPWHSPALVAARQAGIPVRGEVA
                     IAWQTLAHLPWVCITGTNGKTTTTALTAAIFQAAGYNAPACGNIGNSICEVALTARAL
                     DWVIAEISSYQLESSPPLQPEFALWTTLTPDHLERHGTLDAYVATKAHLMNGAKHVIL
                     NGDDPYLRQHMVNRWPQAWWISTQGAIALPKGIAQGIYIAEDQVWFQDQPLLPTHILQ
                     MPGRHNQQNFLLAVATAHLAGIPAETIAKGVAGFAGVPHRLERIRQWREVEWINDSKA
                     TNYDAAEIGLRSVTGPVILIAGGQAKKGDDRPWLNLIQEKAAWVLLIGEAAPQFAQRL
                     EAIGFTNYEIMETLDRAVAAAAELVTQYPIKTVLFSPGCASFDQYQNFEERGDHFRQL
                     CLEL"
     misc_feature    complement(66473..67831)
                     /gene="murD"
                     /locus_tag="tll0073"
                     /note="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
                     synthetase; Provisional; Region: murD; PRK02705"
                     /db_xref="CDD:235059"
     misc_feature    complement(66989..67408)
                     /gene="murD"
                     /locus_tag="tll0073"
                     /note="Mur ligase middle domain; Region: Mur_ligase_M;
                     pfam08245"
                     /db_xref="CDD:219763"
     misc_feature    complement(66650..66898)
                     /gene="murD"
                     /locus_tag="tll0073"
                     /note="Mur ligase family, glutamate ligase domain; Region:
                     Mur_ligase_C; pfam02875"
                     /db_xref="CDD:217262"
     gene            67985..68413
                     /locus_tag="tlr0074"
                     /db_xref="GeneID:1010455"
     CDS             67985..68413
                     /locus_tag="tlr0074"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680865.1"
                     /db_xref="GI:22297618"
                     /db_xref="GeneID:1010455"
                     /translation="MPNLRTIWLCGLLLTTWGGLLSLEGMPAIARRREVPKVVRVTDL
                     QLQSENIAGVWYHRLTGRVRNETATPARNVQIYYEIYDPTGKRLLEAGSTQLHNRVID
                     SEGEAEFLATPNAGGRVKITLVEWLSGDRDYHSFQQMQEF"
     gene            complement(68437..68907)
                     /locus_tag="tll0075"
                     /db_xref="GeneID:1010450"
     CDS             complement(68437..68907)
                     /locus_tag="tll0075"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680866.1"
                     /db_xref="GI:22297619"
                     /db_xref="GeneID:1010450"
                     /translation="MMKPVVRVLQWFLGTFLGLGLMTLVAAAMIMPLIFNLLWPPPRP
                     QVEAHHLPPPTPPASSANSPSASPEPSPTESPQPNPEGRVIYGEGLRVRDRPSREANA
                     LGGVAFDEVVTILERSEDGEWLKIRTKNNLEGWVLAFGVQVTTPQSPASSETPQ"
     misc_feature    complement(68500..68664)
                     /locus_tag="tll0075"
                     /note="Bacterial SH3 domain homologues; Region: SH3b;
                     smart00287"
                     /db_xref="CDD:214600"
     gene            complement(68908..70407)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /db_xref="GeneID:1010448"
     CDS             complement(68908..70407)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680867.1"
                     /db_xref="GI:22297620"
                     /db_xref="GeneID:1010448"
                     /translation="MSAQSDLELLLRARYPLLYVATTEEERLEATLHTISDRLNQRPI
                     YIWDFVEGYQGNPNDVGVAKRNPLSALEFVEKLPPPAAAMVLLRDFHRFIEDVAVSRK
                     LRNLARQLKSQPKNLILLAPTVQLPPELRDVITVVEFPLPQREEIRLELVKLCHSLGN
                     IPPEPVLDELIRACQGLTLERIRRVIGRIIALHGMLDGSHVDLILAEKRQILRQTEIL
                     EFYPTQETIADIGGLDNLKEWLLRRGGAFSERARRYGLPYPRGVLLVGIQGTGKSLTA
                     KAIAHQWHLPLLRLDVGRLFGGLVGESEARTREMIHIAEALAPCVLWIDEMDKAFAGI
                     DGRGDGGTSSRVFGTIITWLAEKTSAVFVVATANNVQVLPPELLRKGRFDEIFFVGLP
                     NMDERRAIFEVHLSRVRRDRLQNYDLERLAYETIDFSGAEIEQCIIEAMHLAFSQDRD
                     FTTEDLLHAASEIIPLARTAREQVHQLQEWAASGRARFASRILSSPPGR"
     misc_feature    complement(68941..70284)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="Ycf46; Provisional; Region: ycf46; CHL00195"
                     /db_xref="CDD:177094"
     misc_feature    complement(69235..69642)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    complement(69589..69612)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(order(69304..69306,69433..69435,69586..69609))
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(69430..69447)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(69262..69264)
                     /gene="ycf46"
                     /locus_tag="tll0076"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     gene            complement(70404..70901)
                     /locus_tag="tll0077"
                     /db_xref="GeneID:1010447"
     CDS             complement(70404..70901)
                     /locus_tag="tll0077"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680868.1"
                     /db_xref="GI:22297621"
                     /db_xref="GeneID:1010447"
                     /translation="MTPVHWLSIPELLRLPAQTYEWQVDTHFPDLPTLTPVQGMVAAT
                     HRHTYLELRASVQTIVTLSCDRCLQYYNHRLECTTSELIWLAESPASQPDDDLVETAP
                     ATGRIDLGDWLYQQLCLALPYPKYCDPNCGGIHPPTPAEPSVDHRWAMLAQLQSALEG
                     AEPSP"
     misc_feature    complement(70440..70748)
                     /locus_tag="tll0077"
                     /note="Uncharacterized ACR, COG1399; Region: DUF177;
                     pfam02620"
                     /db_xref="CDD:217148"
     gene            complement(70904..71335)
                     /locus_tag="tll0078"
                     /db_xref="GeneID:1010444"
     CDS             complement(70904..71335)
                     /locus_tag="tll0078"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680869.1"
                     /db_xref="GI:22297622"
                     /db_xref="GeneID:1010444"
                     /translation="MGLHRLIYLSCATDGLSYPDLRDIMAKSEVNNLRDGITGMLCYG
                     NGMFLQTLEGDRQKVSETYARILKDPRHHSAEIVEFKAIEERTFINWSMRLVQLGEMD
                     SDTIRRLRLKYSPAATFQPRSMTAEQCFRFLKELYDMSQGS"
     misc_feature    complement(71054..71329)
                     /locus_tag="tll0078"
                     /note="Sensors of blue-light using FAD; Region: BLUF;
                     smart01034"
                     /db_xref="CDD:198102"
     gene            complement(71398..71889)
                     /locus_tag="tll0079"
                     /db_xref="GeneID:1010440"
     CDS             complement(71398..71889)
                     /locus_tag="tll0079"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680870.1"
                     /db_xref="GI:22297623"
                     /db_xref="GeneID:1010440"
                     /translation="MLRNPMLRFSDAVLSKQERLSRWGFLGLTTAPLVGAALFNHTGT
                     PPFLRCPFWATTGIPCPGCGLTRSFMAIARGDVTDALRMHLFGPILFLAFTVAAVFIA
                     IELRVGRRLRQTPFRYINERLQNWWWLGAIYLGYYGLRLYSLLHTGEFYINPLERLVT
                     KFS"
     misc_feature    complement(71590..71742)
                     /locus_tag="tll0079"
                     /note="Protein of unknown function (DUF2752); Region:
                     DUF2752; pfam10825"
                     /db_xref="CDD:204556"
     gene            complement(71858..72994)
                     /gene="tgt"
                     /locus_tag="tll0080"
                     /db_xref="GeneID:1010438"
     CDS             complement(71858..72994)
                     /gene="tgt"
                     /locus_tag="tll0080"
                     /EC_number="2.4.2.29"
                     /note="Exchanges the guanine residue with
                     7-aminomethyl-7-deazaguanine in tRNAs with GU(N)
                     anticodons (tRNA-Asp, -Asn, -His and -Tyr)"
                     /codon_start=1
                     /transl_table=11
                     /product="queuine tRNA-ribosyltransferase"
                     /protein_id="NP_680871.1"
                     /db_xref="GI:22297624"
                     /db_xref="GeneID:1010438"
                     /translation="MFEFVCQQECAHTQARAGLFHTPHGTVATPRFMPVGTLANVKTL
                     TPEHLKAAGAQMILANTYHLHLQPGEDIVAAAGGLHCFMGWSGPILTDSGGFQVFSLS
                     EMRQISDQGVVFRSPHDGQIIELSPEGAIAIQEALGADVIMAFDECPPYPASREAVIQ
                     ATQRTLQWLERCIVAKQRSDQALFAIVQGGVYADLRRECAEAMVPYDLPGYAIGGVSV
                     GEPNRIMHEIVAVTAPLLPVHKPRYLMGVGTHLEMLRAIAAGVDLFDCVIPTRLARHG
                     CAIVQGQRWNLKNARFRRDYEPLDPTCPCYTCRTFSRAYLSHLVRAKELLAYTLLSIH
                     NVTELIRFTQAARQAILEERFAAFAAEWEQRLVVDAEEPDAALL"
     misc_feature    complement(71942..72994)
                     /gene="tgt"
                     /locus_tag="tll0080"
                     /note="queuine tRNA-ribosyltransferase; Provisional;
                     Region: tgt; PRK00112"
                     /db_xref="CDD:234642"
     misc_feature    complement(71942..72967)
                     /gene="tgt"
                     /locus_tag="tll0080"
                     /note="Queuine/archaeosine tRNA-ribosyltransferase
                     [Translation, ribosomal structure and biogenesis]; Region:
                     Tgt; COG0343"
                     /db_xref="CDD:223420"
     gene            73361..73999
                     /gene="rplC"
                     /locus_tag="tlr0081"
                     /db_xref="GeneID:1010431"
     CDS             73361..73999
                     /gene="rplC"
                     /locus_tag="tlr0081"
                     /note="binds directly near the 3' end of the 23S rRNA,
                     where it nucleates assembly of the 50S subunit; essential
                     for peptidyltransferase activity; mutations in this gene
                     confer resistance to tiamulin"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="NP_680872.1"
                     /db_xref="GI:22297625"
                     /db_xref="GeneID:1010431"
                     /translation="MTVGILGTKLGMTQIFDEAGRSVPITVVQAGPCPITQIKTPQTD
                     GYTAIQVAYGEVREKNLSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITVDIF
                     SPGQLVDVRGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKR
                     MAGRMGNTAVTIRKLQVMRVDPERNLILIKGALPGKPGALVSITPAKVVGRK"
     misc_feature    73361..73993
                     /gene="rplC"
                     /locus_tag="tlr0081"
                     /note="50S ribosomal protein L3; Validated; Region: rplC;
                     PRK00001"
                     /db_xref="CDD:234564"
     gene            74016..74648
                     /gene="rplD"
                     /locus_tag="tlr0082"
                     /db_xref="GeneID:1010430"
     CDS             74016..74648
                     /gene="rplD"
                     /locus_tag="tlr0082"
                     /note="L4 is important during the early stages of 50S
                     assembly; it initially binds near the 5' end of the 23S
                     rRNA"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="NP_680873.1"
                     /db_xref="GI:22297626"
                     /db_xref="GeneID:1010430"
                     /translation="MVACVVKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANA
                     RQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMN
                     RKERRLALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAAD
                     ITETVALSARNVPTLKLLRADQLNVFDLLYADRIVATTGAIAKIQEVYGD"
     misc_feature    74025..74642
                     /gene="rplD"
                     /locus_tag="tlr0082"
                     /note="50S ribosomal protein L4; Provisional; Region:
                     rplD; PRK05319"
                     /db_xref="CDD:235404"
     gene            74641..74943
                     /gene="rplW"
                     /locus_tag="tlr0083"
                     /db_xref="GeneID:1010423"
     CDS             74641..74943
                     /gene="rplW"
                     /locus_tag="tlr0083"
                     /note="binds third domain of 23S rRNA and protein L29;
                     part of exit tunnel"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="NP_680874.1"
                     /db_xref="GI:22297627"
                     /db_xref="GeneID:1010423"
                     /translation="MTKVQPRALADLIKRPIITEKATVLLENNQYTFDVDRRATKPQI
                     KAAIEELFNVKVTAVNTYHLPPKERRVGRFVGRRPRYKRAIVTLAPDSKIVLFPEV"
     misc_feature    74671..74937
                     /gene="rplW"
                     /locus_tag="tlr0083"
                     /note="ribosomal protein L23; Region: rpl23; CHL00030"
                     /db_xref="CDD:176971"
     gene            74955..75821
                     /gene="rplB"
                     /locus_tag="tlr0084"
                     /db_xref="GeneID:1010421"
     CDS             74955..75821
                     /gene="rplB"
                     /locus_tag="tlr0084"
                     /note="one of the primary rRNA-binding proteins; required
                     for association of the 30S and 50S subunits to form the
                     70S ribosome, for tRNA binding and peptide bond formation"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="NP_680875.1"
                     /db_xref="GI:22297628"
                     /db_xref="GeneID:1010421"
                     /translation="MGIRVYRPYTPGVRQKTVSDFAEITTDKPEKSLTRGFKRDKGRN
                     NRGVITSRRRGGGHKRRYRIVDFRRSSKLNIPAKVATVEYDPNRNARIALLHYRDGEK
                     RYILHPRDLTPGTEIIASPDAPIEVGNALPLGKIPLGTSVHNVEITPGRGAQMVRAAG
                     AMAQVVAKEGDMVTLKLPSGEVRLFRKECYATIGQVGNVEANNISLGKAGRNRWKGRR
                     PKVRGSVMNPVDHPHGGGEGRAPIGRPGPVTPWGKPTLGYKTRKKKKLSDALIVRRRK
                     KSSKRGRGGRQS"
     misc_feature    74955..75770
                     /gene="rplB"
                     /locus_tag="tlr0084"
                     /note="50S ribosomal protein L2; Validated; Region: rplB;
                     PRK09374"
                     /db_xref="CDD:236488"
     misc_feature    75078..75311
                     /gene="rplB"
                     /locus_tag="tlr0084"
                     /note="Ribosomal Proteins L2, RNA binding domain; Region:
                     Ribosomal_L2; pfam00181"
                     /db_xref="CDD:109247"
     misc_feature    75327..75716
                     /gene="rplB"
                     /locus_tag="tlr0084"
                     /note="Ribosomal Proteins L2, C-terminal domain; Region:
                     Ribosomal_L2_C; pfam03947"
                     /db_xref="CDD:202823"
     gene            75844..76122
                     /gene="rps19"
                     /locus_tag="tsr0085"
                     /db_xref="GeneID:1010417"
     CDS             75844..76122
                     /gene="rps19"
                     /locus_tag="tsr0085"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="NP_680876.1"
                     /db_xref="GI:22297629"
                     /db_xref="GeneID:1010417"
                     /translation="MGRSLKKGPFVADHLLRKIEALNERNAKEVIKTWSRASTIVPEM
                     IGHTIAVHNGKQHVPVYITEQMVGHKLGEFAPTRNFRSHVKGDKKARH"
     misc_feature    75844..76116
                     /gene="rps19"
                     /locus_tag="tsr0085"
                     /note="30S ribosomal protein S19; Reviewed; Region: rpsS;
                     PRK00357"
                     /db_xref="CDD:178985"
     gene            76153..76521
                     /gene="rplV"
                     /locus_tag="tlr0086"
                     /db_xref="GeneID:1010416"
     CDS             76153..76521
                     /gene="rplV"
                     /locus_tag="tlr0086"
                     /note="binds specifically to 23S rRNA during the early
                     stages of 50S assembly; makes contact with all 6 domains
                     of the 23S rRNA in the assembled 50S subunit and ribosome;
                     mutations in this gene result in erythromycin resistance;
                     located near peptidyl-transferase center"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="NP_680877.1"
                     /db_xref="GI:22297630"
                     /db_xref="GeneID:1010416"
                     /translation="MVSTSSPTARACAKYVRMSPHKVRRVLDQLRGRTYRDALIMLRF
                     MPYRACEPITKVLRSAAANATHNLGLDPATLVISQAYADQGPCLKRFRPRAQGRAYQI
                     RKPTCHITIAVAPQNTADES"
     misc_feature    76177..76491
                     /gene="rplV"
                     /locus_tag="tlr0086"
                     /note="Ribosomal protein L22/L17e.  L22 (L17 in
                     eukaryotes) is a core protein of the large ribosomal
                     subunit.  It is the only ribosomal protein that interacts
                     with all six domains of 23S rRNA, and is one of the
                     proteins important for directing the proper...; Region:
                     Ribosomal_L22; cd00336"
                     /db_xref="CDD:238205"
     misc_feature    order(76177..76182,76246..76254,76258..76263,76267..76272,
                     76333..76350,76375..76392,76486..76491)
                     /gene="rplV"
                     /locus_tag="tlr0086"
                     /note="putative translocon binding site; other site"
                     /db_xref="CDD:238205"
     misc_feature    order(76186..76188,76192..76194,76201..76203,76207..76215,
                     76222..76224,76234..76236,76243..76245,76327..76329,
                     76339..76341,76348..76350,76387..76389,76393..76401,
                     76405..76407,76414..76416,76450..76467)
                     /gene="rplV"
                     /locus_tag="tlr0086"
                     /note="protein-rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238205"
     gene            76534..77250
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /db_xref="GeneID:1010415"
     CDS             76534..77250
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /note="forms a complex with S10 and S14; binds the lower
                     part of the 30S subunit head and the mRNA in the complete
                     ribosome to position it for translation"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="NP_680878.1"
                     /db_xref="GI:22297631"
                     /db_xref="GeneID:1010415"
                     /translation="MGQKIHPIGFRLGITQDHRSRWYADSDRYPELLQEDHRIRTFIN
                     QQLANAGIAEVRIERKADQVELQIRTARPGVVVGKGGQGIEELRKQLRQMLPANRTIK
                     VNVVEVNRVDAEASLLAEYITQQLERRVAFRRAVRQAIQRAQRAGIEGIKVQVAGRLN
                     GAEIARTEWTREGRVPLHTLRADIDYAYRTARTIYGILGVKVWIFKGEVLPGQTEAVP
                     REATRRSPQRRLPQFENRSN"
     misc_feature    76534..77220
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /note="30S ribosomal protein S3; Reviewed; Region: rpsC;
                     PRK00310"
                     /db_xref="CDD:234722"
     misc_feature    76537..76863
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /note="K homology RNA-binding (KH) domain of the
                     prokaryotic 30S small ribosomal subunit protein S3. S3  is
                     part of the head region of the 30S ribosomal subunit and
                     is believed to interact with mRNA as it threads its way
                     from the latch into the channel.  The KH...; Region:
                     30S_S3_KH; cd02412"
                     /db_xref="CDD:239095"
     misc_feature    76765..76776
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /note="G-X-X-G motif; other site"
                     /db_xref="CDD:239095"
     misc_feature    <76972..77145
                     /gene="rpsC"
                     /locus_tag="tlr0087"
                     /note="Ribosomal protein S3, C-terminal domain; Region:
                     Ribosomal_S3_C; pfam00189"
                     /db_xref="CDD:215779"
     gene            77265..77696
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /db_xref="GeneID:1010413"
     CDS             77265..77696
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="located in the peptidyl transferase center and may
                     be involved in peptidyl transferase activity; similar to
                     archaeal L10e"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="NP_680879.1"
                     /db_xref="GI:22297632"
                     /db_xref="GeneID:1010413"
                     /translation="MLSPKRTKFRKQQRGRMTGVASRGNSIHFGDYALQALEPAWITA
                     RQIEAGRRAMTRYIRRGGKIWIRIFPDKPVTMRPAETRMGSGKGSPEYWVAVVKPGRI
                     MYEIAGVTEEVAREAMRLAAYKMPIKTRFLVRNQEEQQQEG"
     misc_feature    77331..77657
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="Ribosomal_L16_L10e: L16 is an essential protein in
                     the large ribosomal subunit of bacteria, mitochondria, and
                     chloroplasts. Large subunits that lack L16 are defective
                     in peptidyl transferase activity, peptidyl-tRNA hydrolysis
                     activity, association with...; Region: Ribosomal_L16_L10e;
                     cd01433"
                     /db_xref="CDD:238714"
     misc_feature    order(77331..77333,77337..77342,77349..77351,77397..77402,
                     77409..77411,77418..77420,77430..77432,77439..77441,
                     77457..77465,77469..77471,77475..77477,77487..77492,
                     77511..77525,77565..77567,77619..77624,77631..77636)
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238714"
     misc_feature    77376..77381
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="5S rRNA interface [nucleotide binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(77412..77420,77427..77432)
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="putative antibiotic binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(77439..77441,77448..77453,77457..77459,77583..77585)
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="L25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(77505..77510,77517..77522)
                     /gene="rplP"
                     /locus_tag="tlr0088"
                     /note="L27 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238714"
     gene            77699..77911
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /db_xref="GeneID:1010412"
     CDS             77699..77911
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="one of the stabilizing components for the large
                     ribosomal subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="NP_680880.1"
                     /db_xref="GI:22297633"
                     /db_xref="GeneID:1010412"
                     /translation="MALTKMKDLRQLSDQEVSDRIAAIKKELFDLRFKKATRQEVKPH
                     QFKHLRHELAQLLTLENERRRSGGQG"
     misc_feature    77717..77887
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="Ribosomal L29 protein/HIP.  L29 is a protein of the
                     large ribosomal Subunit. A homolog, called heparin/heparan
                     sulfate interacting protein (HIP), has also been
                     identified in mammals.  L29 is located on the surface of
                     the large ribosomal subunit, where it...; Region:
                     Ribosomal_L29_HIP; cd00427"
                     /db_xref="CDD:238243"
     misc_feature    order(77717..77719,77726..77728,77828..77830,77858..77863,
                     77867..77872,77882..77884)
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238243"
     misc_feature    order(77717..77725,77729..77731,77741..77746,77750..77755,
                     77762..77767,77774..77779,77786..77788,77795..77800,
                     77822..77824,77831..77833,77843..77845,77852..77857,
                     77864..77869,77876..77878)
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="putative translocon interaction site; other site"
                     /db_xref="CDD:238243"
     misc_feature    order(77765..77767,77777..77779,77786..77788,77798..77800,
                     77843..77845)
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="signal recognition particle (SRP54) interaction
                     site; other site"
                     /db_xref="CDD:238243"
     misc_feature    order(77783..77785,77792..77797)
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="L23 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238243"
     misc_feature    77804..77809
                     /gene="rpmC"
                     /locus_tag="tsr0089"
                     /note="trigger factor interaction site; other site"
                     /db_xref="CDD:238243"
     gene            77911..78159
                     /gene="rpsQ"
                     /locus_tag="tsr0090"
                     /db_xref="GeneID:1010404"
     CDS             77911..78159
                     /gene="rpsQ"
                     /locus_tag="tsr0090"
                     /note="primary binding protein; helps mediate assembly;
                     involved in translation fidelity"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="NP_680881.1"
                     /db_xref="GI:22297634"
                     /db_xref="GeneID:1010404"
                     /translation="MAVKERVGVVVSDKMQKTVVVAVENRAPHPKYGKIVVKTRRYKA
                     HDENNEAKVGDRVRIRETRPLSRTKRWVIAEILSPRTA"
     misc_feature    77911..78144
                     /gene="rpsQ"
                     /locus_tag="tsr0090"
                     /note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
                     PRK05610"
                     /db_xref="CDD:235532"
     gene            78172..78540
                     /gene="rplN"
                     /locus_tag="tlr0091"
                     /db_xref="GeneID:1010403"
     CDS             78172..78540
                     /gene="rplN"
                     /locus_tag="tlr0091"
                     /note="binds to the 23S rRNA between the centers for
                     peptidyl transferase and GTPase"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="NP_680882.1"
                     /db_xref="GI:22297635"
                     /db_xref="GeneID:1010403"
                     /translation="MIQQETYLNVADNSGAKKLLCIRVLGGSNRRYGSVGDVIIATVK
                     DATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPV
                     ARELRDKNFTKIVSLAPEVL"
     misc_feature    78172..78537
                     /gene="rplN"
                     /locus_tag="tlr0091"
                     /note="50S ribosomal protein L14; Validated; Region: rplN;
                     PRK05483"
                     /db_xref="CDD:180117"
     gene            78540..78893
                     /gene="rplX"
                     /locus_tag="tlr0092"
                     /db_xref="GeneID:1010402"
     CDS             78540..78893
                     /gene="rplX"
                     /locus_tag="tlr0092"
                     /note="assembly initiator protein; binds to 5' end of 23S
                     rRNA and nucleates assembly of the 50S; surrounds
                     polypeptide exit tunnel"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="NP_680883.1"
                     /db_xref="GI:22297636"
                     /db_xref="GeneID:1010402"
                     /translation="MAAKKANKKPVRYRMHVKKGDTVQVIAGSDKAKVGEVLAVFPKT
                     SQVIVKGVNLKTKHLKPRQEGESGQIITKEAPIHSCKVMLYSTKQNVASRICYTYTED
                     GRKVRMLKKTGEIID"
     misc_feature    78582..78890
                     /gene="rplX"
                     /locus_tag="tlr0092"
                     /note="50S ribosomal protein L24; Reviewed; Region: rplX;
                     PRK00004"
                     /db_xref="CDD:234566"
     misc_feature    78597..78791
                     /gene="rplX"
                     /locus_tag="tlr0092"
                     /note="KOW motif of Ribosomal Protein L26; Region:
                     KOW_RPL26; cd06089"
                     /db_xref="CDD:240513"
     misc_feature    order(78618..78626,78660..78662,78705..78710,78774..78779)
                     /gene="rplX"
                     /locus_tag="tlr0092"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240513"
     gene            78951..79496
                     /gene="rplE"
                     /locus_tag="tlr0093"
                     /db_xref="GeneID:1010401"
     CDS             78951..79496
                     /gene="rplE"
                     /locus_tag="tlr0093"
                     /note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts
                     5S rRNA and P site tRNA; forms a bridge to the 30S subunit
                     in the ribosome by binding to S13"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="NP_680884.1"
                     /db_xref="GI:22297637"
                     /db_xref="GeneID:1010401"
                     /translation="MSQRLKDHYNKTVVPQLMQQFQYKNIHQVPKIVKVTVNRGLGEA
                     AQNAKALEATLAEIATITGQKPVVTRAKKAIAGFKIRKGMPVGVAVTLRSERMYAFLD
                     RLINLALPRIRDFRGVNPKSFDGRGNYTLGLREQLIFPEVNYDDIDQIRGMDVSIITT
                     ANTDEEGRALLKAMGMPFREN"
     misc_feature    78960..79490
                     /gene="rplE"
                     /locus_tag="tlr0093"
                     /note="50S ribosomal protein L5; Validated; Region: rplE;
                     PRK00010"
                     /db_xref="CDD:178791"
     misc_feature    79023..79193
                     /gene="rplE"
                     /locus_tag="tlr0093"
                     /note="Ribosomal protein L5; Region: Ribosomal_L5;
                     pfam00281"
                     /db_xref="CDD:109342"
     misc_feature    79203..79487
                     /gene="rplE"
                     /locus_tag="tlr0093"
                     /note="ribosomal L5P family C-terminus; Region:
                     Ribosomal_L5_C; pfam00673"
                     /db_xref="CDD:201383"
     gene            79526..79927
                     /gene="rpsH"
                     /locus_tag="tlr0094"
                     /db_xref="GeneID:1010398"
     CDS             79526..79927
                     /gene="rpsH"
                     /locus_tag="tlr0094"
                     /note="binds directly to 16S rRNA central domain where it
                     helps coordinate assembly of the platform of the 30S
                     subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="NP_680885.1"
                     /db_xref="GI:22297638"
                     /db_xref="GeneID:1010398"
                     /translation="MAVNDTIGDMLTRIRNANLARHQTTTIPATRMTRSIAQVLKAEG
                     FIRDFEEQGDGVKRHLVVSLKYRGKQRQPIITALKRVSKPGLRVYANSRELPRVLGGI
                     GIAIISTSNGIMTDREARKQGIGGEVLCYVW"
     misc_feature    79532..79924
                     /gene="rpsH"
                     /locus_tag="tlr0094"
                     /note="ribosomal protein S8; Region: rps8; CHL00042"
                     /db_xref="CDD:214344"
     gene            79946..80509
                     /gene="rplF"
                     /locus_tag="tlr0095"
                     /db_xref="GeneID:1010397"
     CDS             79946..80509
                     /gene="rplF"
                     /locus_tag="tlr0095"
                     /note="ribosomal protein L6 appears to have arisen as a
                     result of an ancient gene duplication as based on
                     structural comparison of the Bacillus stearothermophilus
                     protein; RNA-binding appears to be in the C-terminal
                     domain; mutations in the L6 gene confer resistance to
                     aminoglycoside antibiotics such as gentamicin and these
                     occur in truncations of the C-terminal domain; it has been
                     localized to a region between the base of the L7/L12 stalk
                     and the central protuberance"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="NP_680886.1"
                     /db_xref="GI:22297639"
                     /db_xref="GeneID:1010397"
                     /translation="MSRIGKRPIPLPKNVTLTLDGQQVTVKGPKGQLSRVFPPEVNVV
                     QEGEAIVVKRRDDSRPAKERHGLCRTLLANMVEGVSQGFTKKLEIQGVGYRAQLQGKT
                     LVLSMGYSHPVEIVPPEGITLEIEDNQGKKVQQGTIVLVSGIDKELVGNTSARIRAVR
                     PPEPYKGKGIRYMGEFVRRKVGKTGKK"
     misc_feature    79946..80503
                     /gene="rplF"
                     /locus_tag="tlr0095"
                     /note="50S ribosomal protein L6; Validated; Region: rplF;
                     PRK05498"
                     /db_xref="CDD:235495"
     misc_feature    79976..80191
                     /gene="rplF"
                     /locus_tag="tlr0095"
                     /note="Ribosomal protein L6; Region: Ribosomal_L6;
                     pfam00347"
                     /db_xref="CDD:215872"
     misc_feature    80216..80461
                     /gene="rplF"
                     /locus_tag="tlr0095"
                     /note="Ribosomal protein L6; Region: Ribosomal_L6;
                     pfam00347"
                     /db_xref="CDD:215872"
     gene            80510..80872
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /db_xref="GeneID:1010396"
     CDS             80510..80872
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="binds 5S rRNA along with protein L5 and L25"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="NP_680887.1"
                     /db_xref="GI:22297640"
                     /db_xref="GeneID:1010396"
                     /translation="MKQTRTAARQSRHQRIRRKVKGTSDRPRLAVFRSHQHIYAQVID
                     DTRHHTLVAASSLEPELRQKLGKGSTCAASIAVGRLIAERAKAAGIERVVFDRGGNIY
                     HGRVKALADAAREGGLDF"
     misc_feature    80555..80863
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="Ribosomal L18/L5e:  L18 (L5e) is a ribosomal
                     protein found in the central protuberance (CP) of the
                     large subunit. L18 binds 5S rRNA and induces a
                     conformational change that stimulates the binding of L5 to
                     5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
                     Ribosomal_L18_L5e; cd00432"
                     /db_xref="CDD:238246"
     misc_feature    order(80555..80557,80564..80569,80792..80794,80801..80803,
                     80849..80851)
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238246"
     misc_feature    80555..80557
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="L21e interface [polypeptide binding]; other site"
                     /db_xref="CDD:238246"
     misc_feature    order(80561..80563,80567..80572,80576..80578,80591..80593,
                     80603..80620,80624..80626,80630..80632,80651..80659,
                     80666..80668,80789..80791,80822..80824)
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="5S rRNA interface [nucleotide binding]; other site"
                     /db_xref="CDD:238246"
     misc_feature    order(80561..80563,80570..80575)
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="L27 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238246"
     misc_feature    80807..80809
                     /gene="rplR"
                     /locus_tag="tlr0096"
                     /note="L5 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238246"
     gene            80884..81408
                     /gene="rpsE"
                     /locus_tag="tlr0097"
                     /db_xref="GeneID:1010395"
     CDS             80884..81408
                     /gene="rpsE"
                     /locus_tag="tlr0097"
                     /note="located at the back of the 30S subunit body where
                     it stabilizes the conformation of the head with respect to
                     the body; contacts S4 and S8; with S4 and S12 plays a role
                     in translational accuracy; mutations in this gene result
                     in spectinomycin resistance"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="NP_680888.1"
                     /db_xref="GI:22297641"
                     /db_xref="GeneID:1010395"
                     /translation="MANRRKNPRKVEKETDWQERVVQIRRVSKVVKGGKKLSFRAIVV
                     VGNERGQVGVGVGKAADVIGAVRKGVADGKKHLIDVPITKSNSIPHPTFGEGGAARVM
                     IRPAAPGTGVIAGGSVRTVLELAGVRNVLAKQLGSSNPLNNARAALEALAALRTFQEV
                     AEEREIPIENLYSK"
     misc_feature    80884..81291
                     /gene="rpsE"
                     /locus_tag="tlr0097"
                     /note="ribosomal protein S5; Validated; Region: rps5;
                     CHL00138"
                     /db_xref="CDD:177060"
     misc_feature    80929..81129
                     /gene="rpsE"
                     /locus_tag="tlr0097"
                     /note="Ribosomal protein S5, N-terminal domain; Region:
                     Ribosomal_S5; pfam00333"
                     /db_xref="CDD:144065"
     misc_feature    81163..81375
                     /gene="rpsE"
                     /locus_tag="tlr0097"
                     /note="Ribosomal protein S5, C-terminal domain; Region:
                     Ribosomal_S5_C; pfam03719"
                     /db_xref="CDD:190724"
     gene            81422..81886
                     /gene="rplO"
                     /locus_tag="tlr0098"
                     /db_xref="GeneID:1010394"
     CDS             81422..81886
                     /gene="rplO"
                     /locus_tag="tlr0098"
                     /note="late assembly protein"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="NP_680889.1"
                     /db_xref="GI:22297642"
                     /db_xref="GeneID:1010394"
                     /translation="MRFQDLHPQAGSRRRKRRIGRGIAAGQGASGGFGMRGQKSRSGR
                     PTRPGFEGGQNPLYRRLPKLKHFPLVKRKVYTTINVGRLNTLPANSVVTVQSLLEAGI
                     LTTAKYPLKVLGDGELNVKLEVHAAAFSGSARSKIEAAGGVCVETSVAADSE"
     misc_feature    <81533..81862
                     /gene="rplO"
                     /locus_tag="tlr0098"
                     /note="50S ribosomal protein L15; Reviewed; Region: rplO;
                     PRK05592"
                     /db_xref="CDD:235523"
     gene            81899..83209
                     /gene="secY"
                     /locus_tag="tlr0099"
                     /db_xref="GeneID:1010393"
     CDS             81899..83209
                     /gene="secY"
                     /locus_tag="tlr0099"
                     /note="forms heterotrimeric complex in the membrane; in
                     bacteria the complex consists of SecY which forms the
                     channel pore and SecE and SecG; the SecG subunit is not
                     essential; in bacteria translocation is driven via the
                     SecA ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="NP_680890.1"
                     /db_xref="GI:22297643"
                     /db_xref="GeneID:1010393"
                     /translation="MIVNRGKAPTAQETFMQMAQAAGLRGRLLITIGLLILVRLGIYL
                     PIPGIDRAVFAQNVQDNAVIRFLDIFAGGGLSALGIFALGILPYINASIIMQLLTAAL
                     PSLERLQKDEGEAGRRKISQITRYVAVGWAVLQSFGIAIFVSSIPGAALHPGPWFVAE
                     IVLGLTAGSMVVMWISELITERGVGNGASLLIFLSIVAYLPASVGQTIALAESGGNIG
                     GIAILVAVFLAMIVGIVFVQEGTRRIPIVSARRQVGRKLYREQTSYLPLRLNQGGVMP
                     IIFASAVLILPSTLAQFTRSELVARFASYVSPAGPTPWLYVIFYLLLILFFSYFYSSL
                     VVNPVDMSQNLKKMGASIPGIRPGKATSDYLERVLNRLTFLGAIFLGLVAIIPTAVES
                     ATKVTTFQGLGATSLLILVGVAIDTSKQIQTYVISQRYEGMVKQ"
     misc_feature    82031..83200
                     /gene="secY"
                     /locus_tag="tlr0099"
                     /note="preprotein translocase subunit SecY; Reviewed;
                     Region: secY; PRK09204"
                     /db_xref="CDD:236412"
     misc_feature    82133..83149
                     /gene="secY"
                     /locus_tag="tlr0099"
                     /note="SecY translocase; Region: SecY; pfam00344"
                     /db_xref="CDD:215869"
     gene            83209..83796
                     /locus_tag="tlr0100"
                     /db_xref="GeneID:1010391"
     CDS             83209..83796
                     /locus_tag="tlr0100"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="NP_680891.1"
                     /db_xref="GI:22297644"
                     /db_xref="GeneID:1010391"
                     /translation="MRLILFGGPGSGKGTQAAILTTLLGIPHISTGDILRAERAAGTL
                     LGQQAQSYMDRGELVPDQVIVDMVANRLQQPDTAAGWLLDGFPRNGAQAAVFEEMLKS
                     IHQDYDYLLFLDVPAAILQERALNRAKQAVNGQQRSDDTPETILKRLQVYERETLPMI
                     QQYMSHPKFVPIDGTRTIEEVTAAIQARIGEVNRV"
     misc_feature    83209..83778
                     /locus_tag="tlr0100"
                     /note="adenylate kinase; Reviewed; Region: adk; PRK00279"
                     /db_xref="CDD:234711"
     misc_feature    83212..83751
                     /locus_tag="tlr0100"
                     /note="Adenylate kinase (ADK) catalyzes the reversible
                     phosphoryl transfer from adenosine triphosphates (ATP) to
                     adenosine monophosphates (AMP) and to yield adenosine
                     diphosphates (ADP). This enzyme is required for the
                     biosynthesis of ADP and is essential for...; Region: ADK;
                     cd01428"
                     /db_xref="CDD:238713"
     misc_feature    order(83299..83301,83314..83316,83383..83385,83458..83463,
                     83467..83472,83482..83484)
                     /locus_tag="tlr0100"
                     /note="AMP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238713"
     misc_feature    order(83314..83316,83458..83460,83470..83472,83587..83589,
                     83650..83652,83662..83664)
                     /locus_tag="tlr0100"
                     /note="ATP-AMP (Ap5A)-binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238713"
     gene            83789..84013
                     /gene="infA"
                     /locus_tag="tsr0101"
                     /db_xref="GeneID:1010390"
     CDS             83789..84013
                     /gene="infA"
                     /locus_tag="tsr0101"
                     /note="stimulates the activities of the other two
                     initiation factors, IF-2 and IF-3"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="NP_680892.1"
                     /db_xref="GI:22297645"
                     /db_xref="GeneID:1010390"
                     /translation="MSKQDAIEIEGTVTESLPNAMFRVDLDNGFNVLAHISGKIRRNY
                     IKILPGDRVKVELTPYDLTKGRITYRLRKK"
     misc_feature    83807..83998
                     /gene="infA"
                     /locus_tag="tsr0101"
                     /note="S1_IF1: Translation Initiation Factor IF1, S1-like
                     RNA-binding domain. IF1 contains an S1-like RNA-binding
                     domain, which is found in a wide variety of RNA-associated
                     proteins. Translation initiation includes a number of
                     interrelated steps preceding the...; Region: S1_IF1;
                     cd04451"
                     /db_xref="CDD:239898"
     misc_feature    order(83831..83839,83855..83857,83891..83893,83900..83905,
                     83918..83929,83978..83980,83984..83986)
                     /gene="infA"
                     /locus_tag="tsr0101"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239898"
     misc_feature    order(83891..83893,83903..83905,83996..83998)
                     /gene="infA"
                     /locus_tag="tsr0101"
                     /note="predicted 30S ribosome binding site; other site"
                     /db_xref="CDD:239898"
     gene            84074..84187
                     /gene="rpmJ"
                     /locus_tag="tsr0102"
                     /db_xref="GeneID:1010389"
     CDS             84074..84187
                     /gene="rpmJ"
                     /locus_tag="tsr0102"
                     /note="smallest protein in the large subunit; similar to
                     what is found with protein L31 and L33 several bacterial
                     genomes contain paralogs which may be regulated by zinc;
                     the protein from Thermus thermophilus has a zinc-binding
                     motif and contains a bound zinc ion; the proteins in this
                     group have the motif"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="NP_680893.1"
                     /db_xref="GI:22297646"
                     /db_xref="GeneID:1010389"
                     /translation="MKVRASVRRICEKCRVIRRRGRVMVICTNPKHKQRQG"
     misc_feature    84074..84184
                     /gene="rpmJ"
                     /locus_tag="tsr0102"
                     /note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
                     PRK00465"
                     /db_xref="CDD:179039"
     gene            84221..84601
                     /gene="rpsM"
                     /locus_tag="tlr0103"
                     /db_xref="GeneID:1010388"
     CDS             84221..84601
                     /gene="rpsM"
                     /locus_tag="tlr0103"
                     /note="located at the top of the head of the 30S subunit,
                     it contacts several helices of the 16S rRNA; makes contact
                     with the large subunit via RNA-protein interactions and
                     via protein-protein interactions with L5; contacts P-site
                     tRNA"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="NP_680894.1"
                     /db_xref="GI:22297647"
                     /db_xref="GeneID:1010388"
                     /translation="MARIAGVDLPRDKRIEIALTYIYGIGLTRSKEILAKTGVNPDTR
                     TRDLTDADIAALRAAIDEYQVEGDLRRLEAMNIKRLMDIGCYRGRRHRLGLPVRGQRT
                     RTNARTRRGSRRTVAGKKKPAAKK"
     misc_feature    84221..84583
                     /gene="rpsM"
                     /locus_tag="tlr0103"
                     /note="ribosomal protein S13; Validated; Region: rps13;
                     CHL00137"
                     /db_xref="CDD:177059"
     misc_feature    84221..84583
                     /gene="rpsM"
                     /locus_tag="tlr0103"
                     /note="30S ribosomal protein S13; Validated; Region: rpsM;
                     PRK05179"
                     /db_xref="CDD:235358"
     gene            84644..85036
                     /gene="rps11"
                     /locus_tag="tlr0104"
                     /db_xref="GeneID:1010387"
     CDS             84644..85036
                     /gene="rps11"
                     /locus_tag="tlr0104"
                     /note="located on the platform of the 30S subunit, it
                     bridges several disparate RNA helices of the 16S rRNA;
                     forms part of the Shine-Dalgarno cleft in the 70S
                     ribosome; interacts with S7 and S18 and IF-3"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="NP_680895.1"
                     /db_xref="GI:22297648"
                     /db_xref="GeneID:1010387"
                     /translation="MAPSAKRSGPRKQKRNVPSGVAHIQSTFNNTIVSITDPNGEVIA
                     WASAGSSGFKGAKKGTPFAAQTAADNAARRAIDQGMRQIEVMVSGPGSGRETAIRALQ
                     AAGLEITLIRDVTPIPHNGCRPPKRRRV"
     misc_feature    84656..85033
                     /gene="rps11"
                     /locus_tag="tlr0104"
                     /note="30S ribosomal protein S11; Validated; Region:
                     PRK05309"
                     /db_xref="CDD:180007"
     gene            85066..86031
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /db_xref="GeneID:1010385"
     CDS             85066..86031
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /EC_number="2.7.7.6"
                     /note="catalyzes the transcription of DNA into RNA using
                     the four ribonucleoside triphosphates as substrates.
                     Dimerization of the alpha subunit is the first step in the
                     sequential assembly of subunits to form the holoenzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="NP_680896.1"
                     /db_xref="GI:22297649"
                     /db_xref="GeneID:1010385"
                     /translation="MAYQIECLETRVEEDQGQYGQFALHPLAPGQGITVGNALRRVLL
                     SNLPGSAVTAVRIAGVNHEFSTIPGVREDVMDILLQMKQLVIRSHTSEPQMGRLFAQA
                     PENEPLTVTAGMVQLGSEVEVVNPNHYIATLMPGATLEMEFKIEKDRGYRSVERVRDD
                     RLALDYLQLDAVFMPVRRVNYTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALN
                     QAATILVDLFSPLKEVPLHTSEATATDDHDETGQIPIEQLNLSVRAYNCLKRAQVNTV
                     ADLLEYSQEELLEIKNFGQKSAEEVIEALQKHLGITLPPQKAARN"
     misc_feature    85072..86007
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="DNA-directed RNA polymerase subunit alpha;
                     Provisional; Region: PRK05182"
                     /db_xref="CDD:235359"
     misc_feature    85096..85758
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="N-terminal domain of the Alpha subunit of Bacterial
                     RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
                     /db_xref="CDD:132904"
     misc_feature    order(85099..85101,85135..85137,85144..85146,85150..85158,
                     85165..85167,85177..85179,85186..85191,85201..85203,
                     85726..85728,85735..85740,85744..85749,85753..85758)
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="alphaNTD homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:132904"
     misc_feature    order(85126..85128,85162..85164,85174..85176,85183..85188,
                     85249..85251,85255..85257,85261..85263,85267..85278,
                     85291..85293,85309..85311,85465..85467,85516..85518,
                     85573..85575,85579..85581,85597..85605,85609..85620,
                     85660..85662,85669..85671,85675..85677)
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="alphaNTD - beta interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132904"
     misc_feature    order(85255..85257,85291..85293,85300..85302,85309..85314,
                     85513..85518,85522..85524,85579..85581,85594..85599,
                     85624..85626)
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="alphaNTD - beta' interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132904"
     misc_feature    85798..85986
                     /gene="rpoA"
                     /locus_tag="tlr0105"
                     /note="Bacterial RNA polymerase, alpha chain C terminal
                     domain; Region: RNA_pol_A_CTD; pfam03118"
                     /db_xref="CDD:202541"
     gene            86054..86404
                     /gene="rplQ"
                     /locus_tag="tlr0106"
                     /db_xref="GeneID:1010384"
     CDS             86054..86404
                     /gene="rplQ"
                     /locus_tag="tlr0106"
                     /note="is a component of the macrolide binding site in the
                     peptidyl transferase center"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="NP_680897.1"
                     /db_xref="GI:22297650"
                     /db_xref="GeneID:1010384"
                     /translation="MRHQRRVPQLGRPADQRKALLRALTTELIRHGRITTTKARAKAV
                     RAEAERMITLAKDGSLAARRRALGYLYDKQLVHSLFAQAPERYGDRQGGYTRIIRSVR
                     RRGDNAELAVIELV"
     misc_feature    86063..86401
                     /gene="rplQ"
                     /locus_tag="tlr0106"
                     /note="50S ribosomal protein L17; Validated; Region: rplQ;
                     PRK05591"
                     /db_xref="CDD:235522"
     gene            86411..87265
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /db_xref="GeneID:1010378"
     CDS             86411..87265
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /EC_number="5.4.99.12"
                     /note="mediates pseudouridylation (positions 38, 39, 40)
                     at the tRNA anticodon region which contributes to the
                     structural stability"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine synthase A"
                     /protein_id="NP_680898.1"
                     /db_xref="GI:22297651"
                     /db_xref="GeneID:1010378"
                     /translation="MMTAIAPSQSGQRLALLIQYQGTHFHGWQRQVGQRTVQEVIEQA
                     IASVVNHPVSVVAAGRTDTGVHAAGQVAHVTVNSPIPVHRWPGILNARLPADVVIRAA
                     AAVPPDWHARFSALWRRYRYTLYTDPCPNIFLRPWTWHYYYAPLDVAKMAAVLQPLVG
                     RHHLSAFHRSGSNRAHSWVEVQAVSCQRRGALVEIEVQASGFLYGMMRLLVGLLVQVG
                     QGQRSPASFTEIWQQEQRHLVKYAAPPSGLCLLGVGYPESPFPLALCTEAMPQFQLAS
                     VCPELSIA"
     misc_feature    86444..87175
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /note="tRNA pseudouridine synthase A; Validated; Region:
                     truA; PRK00021"
                     /db_xref="CDD:234577"
     misc_feature    86456..87175
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /note="Eukaryotic and bacterial pseudouridine synthases
                     similar to E.  coli TruA; Region: PseudoU_synth_EcTruA;
                     cd02570"
                     /db_xref="CDD:211337"
     misc_feature    order(86465..86467,86678..86680,86687..86710)
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /note="dimerization interface 3.5A [polypeptide binding];
                     other site"
                     /db_xref="CDD:211337"
     misc_feature    order(86585..86596,87032..87034)
                     /gene="truA"
                     /locus_tag="tlr0107"
                     /gene_synonym="hisT"
                     /note="active site"
                     /db_xref="CDD:211337"
     gene            87282..87740
                     /gene="rplM"
                     /locus_tag="tlr0108"
                     /db_xref="GeneID:1010377"
     CDS             87282..87740
                     /gene="rplM"
                     /locus_tag="tlr0108"
                     /note="in Escherichia coli this protein is one of the
                     earliest assembly proteins in the large subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="NP_680899.1"
                     /db_xref="GI:22297652"
                     /db_xref="GeneID:1010377"
                     /translation="MTSTVKTPLPAVDDLAPQWYVIDAADQRLGRLAAEIARILRGKN
                     KAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPE
                     RIIEHAVKGMLPKNSLGRKLFTKLKVYAGPEHPHQAQKPQPLTINTIPGA"
     misc_feature    87336..87677
                     /gene="rplM"
                     /locus_tag="tlr0108"
                     /note="Ribosomal protein L13.  Protein L13, a large
                     ribosomal subunit protein, is one of five proteins
                     required for an early folding intermediate of 23S rRNA in
                     the assembly of the large subunit. L13 is situated on the
                     bottom of the large subunit, near the...; Region:
                     Ribosomal_L13; cd00392"
                     /db_xref="CDD:238230"
     misc_feature    order(87363..87365,87369..87374,87381..87383,87390..87392,
                     87402..87404,87486..87488,87492..87494,87576..87581,
                     87597..87605,87609..87617,87621..87629,87633..87635,
                     87639..87641,87651..87653,87660..87665)
                     /gene="rplM"
                     /locus_tag="tlr0108"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238230"
     misc_feature    87579..87581
                     /gene="rplM"
                     /locus_tag="tlr0108"
                     /note="L3 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238230"
     gene            87743..88156
                     /gene="rpsI"
                     /locus_tag="tlr0109"
                     /db_xref="GeneID:1010376"
     CDS             87743..88156
                     /gene="rpsI"
                     /locus_tag="tlr0109"
                     /note="forms a direct contact with the tRNA during
                     translation"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="NP_680900.1"
                     /db_xref="GI:22297653"
                     /db_xref="GeneID:1010376"
                     /translation="MQIADQSKRVVYLGTGRRKSAVARVRLIPGSGQLWINGRNGADY
                     LQNNPIYLNLVKAPLETLGLENSYDIYVNATGGGLTGQADAIRLGIARALCQLDIENR
                     KPLKTEGYLTRDPRAKERRKYGLRKARKAPQYSKR"
     misc_feature    87776..88153
                     /gene="rpsI"
                     /locus_tag="tlr0109"
                     /note="ribosomal protein S9; Region: rps9; CHL00079"
                     /db_xref="CDD:214357"
     gene            88195..88470
                     /gene="rpmE"
                     /locus_tag="tsr0110"
                     /db_xref="GeneID:1010373"
     CDS             88195..88470
                     /gene="rpmE"
                     /locus_tag="tsr0110"
                     /note="RpmE; there appears to be two types of ribosomal
                     proteins L31 in bacterial genomes; some contain a CxxC
                     motif while others do not; Bacillus subtilis has both
                     types; the proteins in this cluster do not have the CXXC
                     motif; RpmE is found in exponentially growing Bacilli
                     while YtiA was found after exponential growth; expression
                     of ytiA is controlled by a zinc-specific transcriptional
                     repressor; RpmE contains one zinc ion and a CxxC motif is
                     responsible for this binding; forms an RNP particle along
                     with proteins L5, L18, and L25 and 5S rRNA; found
                     crosslinked to L2 and L25 and EF-G; may be near the
                     peptidyltransferase site of the 50S ribosome"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="NP_680901.1"
                     /db_xref="GI:22297654"
                     /db_xref="GeneID:1010373"
                     /translation="MPKPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPF
                     FTGTQKIVDAEGRVERFRRKYSGTKPQQTAKGKKAAPKSTPKTNKKG"
     misc_feature    88195..88395
                     /gene="rpmE"
                     /locus_tag="tsr0110"
                     /note="ribosomal protein L31; Validated; Region: rpl31;
                     CHL00136"
                     /db_xref="CDD:177058"
     gene            88480..89505
                     /locus_tag="tlr0111"
                     /db_xref="GeneID:1010371"
     CDS             88480..89505
                     /locus_tag="tlr0111"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680902.1"
                     /db_xref="GI:22297655"
                     /db_xref="GeneID:1010371"
                     /translation="MSLFFRPAEWLPHRACWLAFPSHEDLWGELLPQVRFEFAALCRA
                     IADPDPVTGQCRGEQLKILVLDETGKATAHSYLSDLNPQFYQLTFGDIWLRDTAPVGL
                     INEAGERRLLCLPFNGWGKKYQLAGDSDLAIRLALLMGIPYGSVPLFLEGGAIEVDGE
                     GTCLTTRQCLLNPNRNPYLSSAEVEARLKPALGVSKILWIESGLVNDHTDGHIDTLVR
                     FVAPATVVCMLAESPEDPNCDVLRTIYEQLQTLTDAKGRSLEVIPVPSPGRVTSQKGE
                     ILPASYVNFYIANTTVVVPTYGVEADAKAVEAIAKLFPSRRTIGLPARTILEGGGAFH
                     CITQQEL"
     misc_feature    88489..89499
                     /locus_tag="tlr0111"
                     /note="Peptidylarginine deiminase and related enzymes
                     [Amino acid transport and metabolism]; Region: COG2957;
                     cl01113"
                     /db_xref="CDD:242309"
     misc_feature    88489..89499
                     /locus_tag="tlr0111"
                     /note="Porphyromonas-type peptidyl-arginine deiminase;
                     Region: PAD_porph; pfam04371"
                     /db_xref="CDD:218048"
     gene            89502..90359
                     /locus_tag="tlr0112"
                     /db_xref="GeneID:1010369"
     CDS             89502..90359
                     /locus_tag="tlr0112"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_680903.1"
                     /db_xref="GI:22297656"
                     /db_xref="GeneID:1010369"
                     /translation="MRTLTVAAIQAQLTDDVETNILHLSDLVRQAHQRGAQLIVLPEL
                     FEGHYFCKEEREIHFQRAHPVKKHPTIAHFEALARELEVVIPVSFFEKAGTVYYNSVA
                     MIDAGGVNLGVYRKSHIPDGPGYEEKFYFRPGNTGFRVWRTRYGRIGVGICWDQWFPE
                     AARVMTLMGAEVLVYPTAIGSEPHDPTLDTKDPWQRVMVGHAVANVIPVVAANRVGNE
                     GGQVFYGSSFIANPRGDLVAEADRSQEAVLVHKFDLGEIERLRAAYGFFRDRRPGLYK
                     ALLTADGVI"
     misc_feature    89511..90341
                     /locus_tag="tlr0112"
                     /note="N-carbamoylputrescine amidohydrolase (CPA) (class
                     11 nitrilases); Region: CPA; cd07573"
                     /db_xref="CDD:143597"
     misc_feature    89511..90335
                     /locus_tag="tlr0112"
                     /note="N-carbamoylputrescine amidase; Region:
                     agmatine_aguB; TIGR03381"
                     /db_xref="CDD:188311"
     misc_feature    order(89628..89630,89847..89849,89859..89861,89880..89882,
                     89958..89963,89967..89972,90033..90035)
                     /locus_tag="tlr0112"
                     /note="putative active site; other site"
                     /db_xref="CDD:143597"
     misc_feature    order(89628..89630,89847..89849,89958..89960)
                     /locus_tag="tlr0112"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:143597"
     misc_feature    order(89850..89861,89877..89879,89898..89906,89961..89963,
                     89967..89981,89988..89993,90087..90092,90096..90104,
                     90108..90113,90174..90179,90303..90317)
                     /locus_tag="tlr0112"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:143597"
     gene            complement(90858..91229)
                     /gene="ftrC"
                     /locus_tag="tll0113"
                     /db_xref="GeneID:1010368"
     CDS             complement(90858..91229)
                     /gene="ftrC"
                     /locus_tag="tll0113"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-thioredoxin reductase, catalytic
                     chain"
                     /protein_id="NP_680904.1"
                     /db_xref="GI:22297657"
                     /db_xref="GeneID:1010368"
                     /translation="MSSSYKPQQASDKNLEAMRKFAETYAKRTGTYFCSDLGTTAVVL
                     EGLAKHKDDYGSPLCPCRHYEDKEAEVAAAYWNCPCVPMRERRECHCLLFLTPDHPFA
                     GTAQEITFEQIREETNRFAAS"
     misc_feature    complement(90906..91193)
                     /gene="ftrC"
                     /locus_tag="tll0113"
                     /note="ferredoxin thioreductase subunit beta; Validated;
                     Region: ftrB; CHL00165"
                     /db_xref="CDD:214382"
     gene            complement(91307..93765)
                     /gene="trnI_CAU"
                     /locus_tag="rTEt01"
                     /db_xref="GeneID:2943280"
     tRNA            complement(join(91307..91362,93749..93765))
                     /gene="trnI_CAU"
                     /locus_tag="rTEt01"
                     /product="tRNA-His"
                     /codon_recognized="CAU"
                     /db_xref="GeneID:2943280"
     gene            complement(91446..93134)
                     /locus_tag="tll0114"
                     /db_xref="GeneID:1010366"
     CDS             complement(91446..93134)
                     /locus_tag="tll0114"
                     /codon_start=1
                     /transl_table=11
                     /product="maturase; reverse transcriptase"
                     /protein_id="NP_680905.1"
                     /db_xref="GI:22297658"
                     /db_xref="GeneID:1010366"
                     /translation="METRQMAVEQTTGAVTNQTETSWHSIDWAKANREVKRLQVRIAK
                     AVKEGRWGKVKALQWLLTHSFYGKALAVKRVTDNSGSKTPGVDGITWSTQEQKAQAIK
                     SLRRRGYKPQPLRRVYIPKASGKQRPLGIPTTKDRAMQALYALALEPVAETTADRNSY
                     GFRQGRCTADAAGQCFTVLGRSDCAKYILDADITGCFDNISHEWLLDNIPLDKEVLRK
                     WLKSGFVWKQQLFPTHAGTPQGGVISPMLANMTLDGMEELLKKHLRKQKVNLIRYAGD
                     FVVTGESKETLEKVTTVIQEFLKERGLTLSEEKTKVVHIEEGFDFLGWNIRKYGEKLL
                     IKPAKKNIKAFHKKIRDALKELRTATQEAVIDTLNPIIKGWANYHRNQVSKRIFNRAD
                     DNIWHKLWRWAKRRHPNKPARWTKNKYFIKIGNRHWVFGTWKKDKEGRLRSRYLIKAG
                     DTRIQRHVKIKADANPFLPEWAEYFEERKKLKEAPAQYRRIRRELWKKQGGICPVCGG
                     EIEQDMLTEIHHILPKHKGGSDDLDNLVLIHANCHKQVHSRDGQHSRFLLKEGL"
     misc_feature    complement(92820..93068)
                     /locus_tag="tll0114"
                     /note="N-terminal domain of reverse transcriptase; Region:
                     RVT_N; pfam13655"
                     /db_xref="CDD:222291"
     misc_feature    complement(92163..93062)
                     /locus_tag="tll0114"
                     /note="Retron-type reverse transcriptase [DNA replication,
                     recombination, and repair]; Region: COG3344"
                     /db_xref="CDD:225881"
     misc_feature    complement(92157..92792)
                     /locus_tag="tll0114"
                     /note="RT_G2_intron: Reverse transcriptases (RTs) with
                     group II intron origin. RT transcribes DNA using RNA as
                     template. Proteins in this subfamily are found in
                     bacterial and mitochondrial group II introns. Their most
                     probable ancestor was a retrotransposable...; Region:
                     RT_G2_intron; cd01651"
                     /db_xref="CDD:238828"
     misc_feature    complement(order(92166..92171,92307..92312,92316..92318,
                     92415..92420,92544..92561))
                     /locus_tag="tll0114"
                     /note="putative active site [active]"
                     /db_xref="CDD:238828"
     misc_feature    complement(order(92310..92312,92418..92420,92544..92561))
                     /locus_tag="tll0114"
                     /note="putative NTP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238828"
     misc_feature    complement(92415..92417)
                     /locus_tag="tll0114"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238828"
     misc_feature    complement(91875..92111)
                     /locus_tag="tll0114"
                     /note="Group II intron, maturase-specific domain; Region:
                     GIIM; pfam08388"
                     /db_xref="CDD:219816"
     misc_feature    complement(<91485..91769)
                     /locus_tag="tll0114"
                     /note="Restriction endonuclease [Defense mechanisms];
                     Region: McrA; COG1403"
                     /db_xref="CDD:224321"
     misc_feature    complement(91494..91667)
                     /locus_tag="tll0114"
                     /note="HNH nucleases; HNH endonuclease signature which is
                     found in viral, prokaryotic, and eukaryotic proteins.                 