1) cat 1.fasta > all.fasta | cat 2.fasta >> all.fasta
2) seqret all.fasta:1 1seq.fasta |seqret all.fasta:2 2seq.fasta
4) transeq 1.fasta 1prot.fasta
8) featcopy sequence.gb sequence.gff
9) extractfeat sequence.gp extract.fasta
10) shuffleseq 2.fasta 2sh.fasta
11) makenucseq -codonfile '' -amount 3 -length 100 makeseq.fasta
15) noreturn totalread.txt totalread_Unix.txt -system unix
16) degapseq fastq::a.fastq fasta::a.fasta
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