Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.nbcr.net.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE ./Seed.fasta (peptide)
	Last updated on Thu Apr 28 20:12:32 2011
	Database contains 9 sequences, 1916 residues

	MOTIFS ./memeout.txt (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    41   QETCGPGGIAYGMRSIGGVWEICDYMEKYCPNAWMLNYSNP
	  2    46   ATRRLRPNSKILNICDMPIGIESRMAQILGLQSRKQMRVRYYGLNH
	  3    50   ASWNDTFAKAKDVQALDPQTLPNTYLKYYLFPDYVVEHSNPEYTRANEVM

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.12
	   3   0.10  0.06
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
MALH_FUSMR/189-416 1.1e-54 228
D A ?
GLVA_BACSU/191-417 3.9e-53 227
D A ?
LICH_BACSU/191-412 0.098 222
D A ?
AGLA_THEMA/192-451 0.23 260
D A ?
CHBF_ECOLI/192-415 0.32 224
D A ?
AGAL_BACSU/188-404 3.1 217
D A ?
LPLD_BACSU/199-425 7 227
D A ?
AGAL_ECOLI/192-421 8.2 230
D A ?
homologous 9 81

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
MALH_FUSMR/189-416 1.1e-54

3
S A ?
GLVA_BACSU/191-417 3.9e-53

3
S A ?
LICH_BACSU/191-412 0.098

3
S A ?
AGLA_THEMA/192-451 0.23

1
S A ?
CHBF_ECOLI/192-415 0.32

S A ?
AGAL_BACSU/188-404 3.1

S A ?
LPLD_BACSU/199-425 7

S A ?
AGAL_ECOLI/192-421 8.2

S A ?
homologous 9

SCALE
| | | | | | | | | |
1 25 50 75 100 125 150 175 200 225

SECTION III: ANNOTATED SEQUENCES


MALH_FUSMR/189-416
S D ?


LENGTH = 228 COMBINED P-VALUE = 1.17e-55 E-VALUE = 1.1e-54
DIAGRAM: 51-[3]-127
                                                        [3]
                                                        9.3e-62
                                                        ASWNDTFAKAKDVQALDPQTLPNT
                                                        ++++++++++++++++++++++++
1    KDMDIMYYGLNHFGWWKSVRDKQGNDLMPKLREHVSQYGYVVPKGDNQHTEASWNDTFAKAKDVLALDPTTLPNT

     
     
     YLKYYLFPDYVVEHSNPEYTRANEVM
     ++++++++++++++++++++++++++
76   YLKYYLFPDYVVEHSNKEYTRANEVMDGREKFVFGECEKVVKNQSSEGCALHIDEHASYIVDLARAIAFNTKEKM



GLVA_BACSU/191-417
S D ?


LENGTH = 227 COMBINED P-VALUE = 4.29e-54 E-VALUE = 3.9e-53
DIAGRAM: 50-[3]-127
                                                       [3]
                                                       5.1e-60
                                                       ASWNDTFAKAKDVQALDPQTLPNTY
                                                       +++++++++++++++++++++++++
1    KEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTY

     
     
     LKYYLFPDYVVEHSNPEYTRANEVM
     +++++++++++++++++++++++++
76   LQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERML



LICH_BACSU/191-412
S D ?


LENGTH = 222 COMBINED P-VALUE = 1.09e-02 E-VALUE = 0.098
DIAGRAM: 45-[3]-127
                                                  [3]
                                                  2.5e-05
                                                  ASWNDTFAKAKDVQALDPQTLPNTYLKYYL
                                                   +           + + +      + +
1    DRVEVQFAGLNHMVFGLDVFLDGVSVKEQVIEAMGDPKNAMTMKNISGAEWEPDFLKALNVIPCGYHRYYFKTKE

     
     
     FPDYVVEHSNPEYTRANEVM
           + +  + +++  +
76   MLEHELEASQTEGTRAEVVQKVEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACNLISSIYNDKHDIQPVNTIN



AGLA_THEMA/192-451
S D ?


LENGTH = 260 COMBINED P-VALUE = 2.60e-02 E-VALUE = 0.23
DIAGRAM: 86-[1]-133

                [1]
                3.4e-05
                QETCGPGGIAYGMRSIGGVWEICDYMEKYCPNAWMLNYSNP
                   + + + + +        + +  ++++  +   +   ++
76   WRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLE



CHBF_ECOLI/192-415
S D ?


LENGTH = 224 COMBINED P-VALUE = 3.57e-02 E-VALUE = 0.32
DIAGRAM: 224



AGAL_BACSU/188-404
S D ?


LENGTH = 217 COMBINED P-VALUE = 3.46e-01 E-VALUE = 3.1
DIAGRAM: 217



LPLD_BACSU/199-425
S D ?


LENGTH = 227 COMBINED P-VALUE = 7.75e-01 E-VALUE = 7
DIAGRAM: 227



AGAL_ECOLI/192-421
S D ?


LENGTH = 230 COMBINED P-VALUE = 9.10e-01 E-VALUE = 8.2
DIAGRAM: 230



homologous
S D ?


LENGTH = 81 COMBINED P-VALUE = 1.00e+00 E-VALUE = 9
DIAGRAM: 81



Debugging Information




CPU: kodomo
Time 0.016001 secs.

mast ./memeout.txt -d ./Seed.fasta -ev 10.000000 -mt 0.000100

Button Help


E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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This information

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