Operon IdGene Type COGgene PosLeft postRight Strand Function 1 thrL CDS NA 190 255 + NA 2 thrA CDS COG0527 336 2798 + [E] Aspartokinases thrB CDS COG0083 2800 3732 + [E] Homoserine kinase thrC CDS COG0498 3733 5019 + [E] Threonine synthase 3 cds-NP_705965.2 CDS ROG2395 5242 5529 + NA 4 yaaA CDS COG3022 5682 6458 - [S] Uncharacterized protein conserved in bacteria 5 cds-NP_705967.1 CDS NA 8074 8358 + NA talB CDS COG0176 8237 9190 + [G] Transaldolase mogA CDS COG0521 9305 9892 + [H] Molybdopterin biosynthesis enzymes 6 yaaH CDS COG1584 9927 10493 - [S] Predicted membrane protein 7 cds-NP_705971.1 CDS COG4735 10642 11355 - [S] Uncharacterized protein conserved in bacteria yaaI CDS NA 11381 11785 - NA 8 dnaK CDS COG0443 12162 14078 + [O] Molecular chaperone dnaJ CDS COG0484 14167 15297 + [O] DnaJ-class molecular chaperone with C-terminal Zn 9 cds-YP_008439227.1 CDS NA 15401 15553 - NA 10 nhaA CDS COG3004 16140 17306 + [P] Na+/H+ antiporter nhaR CDS COG0583 17372 18271 + [K] Transcriptional regulator 11 insB CDS COG1662 18684 19079 - [L] Transposase and inactivated derivatives, IS1 family insA CDS COG3677 19106 19381 - [L] Transposase and inactivated derivatives 12 rpsT CDS COG0268 19770 20033 - [J] Ribosomal protein S20 13 cds-YP_008439228.1 CDS NA 20136 20354 + NA ribF CDS COG0196 20362 21303 + [H] FAD synthase ileS CDS COG0060 21346 24162 + [J] Isoleucyl-tRNA synthetase lspA CDS COG0597 24162 24656 + [MU] Lipoprotein signal peptidase 14 slpA CDS COG1047 24749 25198 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 15 slpA_2 CDS COG1047 25256 25705 + [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 ispH CDS COG0761 25707 26657 + [IM] Penicillin tolerance protein 16 yaaF CDS COG1957 26723 27637 + [F] Inosine-uridine nucleoside N-ribohydrolase 17 dapB CDS COG0289 27804 28625 + [E] Dihydrodipicolinate reductase 18 carA CDS COG0505 29081 30229 + [EF] Carbamoylphosphate synthase small subunit carB CDS COG0458 30247 33468 + [EF] Carbamoylphosphate synthase large subunit (split gene 19 caiF CDS NA 33730 34125 + NA 20 caiE CDS COG0663 34211 34822 - [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily caiD CDS COG1024 34807 35700 - [I] Enoyl-CoA hydratase/carnithine racemase caiC CDS COG0318 35701 37269 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II caiB CDS COG1804 37328 38545 - [C] Predicted acyl-CoA transferases/carnitine dehydratase caiA CDS COG1960 38674 39816 - [I] Acyl-CoA dehydrogenases caiT CDS COG1292 39847 41361 - [M] Choline-glycine betaine transporter 21 fixA CDS COG2086 41681 42487 + [C] Electron transfer flavoprotein, beta subunit cds-NP_705998.1 CDS COG2025 42502 43293 + [C] Electron transfer flavoprotein, alpha subunit fixC CDS COG0644 43494 44780 + [C] Dehydrogenases (flavoproteins) fixX CDS COG2440 44777 45064 + [C] Ferredoxin-like protein yaaU CDS ROG2472 45123 46517 + NA yabF CDS COG2249 46565 47095 + [R] Putative NADPH-quinone reductase (modulator of drug kefC CDS COG0475 47088 48950 + [P] Kef-type K+ transport systems, membrane components 22 folA CDS COG0262 49141 49620 + [H] Dihydrofolate reductase 23 apaH CDS COG1408 49698 50540 - [R] Predicted phosphohydrolases apaG CDS COG2967 50547 50924 - [P] Uncharacterized protein affecting Mg2+/Co2+ transport ksgA CDS COG0030 50927 51748 - [J] Dimethyladenosine transferase (rRNA methylation) pdxA CDS COG1995 51745 52734 - [H] Pyridoxal phosphate biosynthesis protein surA CDS COG0760 52734 54020 - [O] Parvulin-like peptidyl-prolyl isomerase imp CDS COG1452 54073 56427 - [M] Organic solvent tolerance protein OstA 24 djlA CDS COG1076 56682 57497 + [O] DnaJ-domain-containing proteins 1 25 yabO CDS COG0564 57645 58331 - [J] Pseudouridylate synthases, 23S RNA-specific hepA CDS COG0553 58286 61192 - [KL] Superfamily II DNA/RNA helicases, SNF2 family polB CDS COG0417 61357 63708 - [L] DNA polymerase elongation subunit (family B) araD CDS COG0235 63783 64478 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 26 araB CDS COG1069 66190 67890 - [C] Ribulose kinase 27 araC CDS COG2207 68229 69107 + [K] AraC-type DNA-binding domain-containing proteins yabI CDS COG0586 69193 69957 + [S] Uncharacterized membrane-associated protein 28 thiQ CDS COG3840 70071 70769 - [H] ABC-type thiamine transport system, ATPase component thiP CDS COG1178 70753 72363 - [P] ABC-type Fe3+ transport system, permease component tbpA CDS COG4143 72339 73322 - [H] ABC-type thiamine transport system, periplasmic component yabN CDS COG4533 73486 75141 - [R] ABC-type uncharacterized transport system, periplasmic component 29 yabM CDS NA 75463 76641 + NA 30 leuD CDS COG0066 76690 77295 - [E] 3-isopropylmalate dehydratase small subunit leuC CDS COG0065 77306 78706 - [E] 3-isopropylmalate dehydratase large subunit leuB CDS COG0473 78709 79803 - [CE] Isocitrate/isopropylmalate dehydrogenase leuA CDS COG0119 79800 81371 - [E] Isopropylmalate/homocitrate/citramalate synthases 31 leuL CDS NA 81464 81550 - NA 32 leuO CDS COG0583 82032 83153 + [K] Transcriptional regulator 33 ilvI CDS COG0028 83387 85195 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvH CDS COG0440 85198 85689 + [E] Acetolactate synthase, small (regulatory) subunit fruL CDS NA 85701 85787 + NA 34 fruR CDS COG1609 85869 86873 + [K] Transcriptional regulators 35 insA_2 CDS COG3677 86996 87271 + [L] Transposase and inactivated derivatives insB_2 CDS COG1662 87298 87693 + [L] Transposase and inactivated derivatives, IS1 family 36 yabB CDS COG2001 88252 88710 + [S] Uncharacterized protein conserved in bacteria mraW CDS COG0275 88712 89653 + [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell ftsL CDS COG3116 89650 90015 + [D] Cell division protein ftsI CDS COG0768 90031 91797 + [M] Cell division protein FtsI/penicillin-binding protein 2 murE CDS COG0769 91784 93271 + [M] UDP-N-acetylmuramyl tripeptide synthase murF CDS COG0770 93268 94626 + [M] UDP-N-acetylmuramyl pentapeptide synthase mraY CDS COG0472 94620 95702 + [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase murD CDS COG0771 95705 97021 + [M] UDP-N-acetylmuramoylalanine-D-glutamate ligase ftsW CDS COG0772 97021 98265 + [D] Bacterial cell division membrane protein murG CDS COG0707 98262 99329 + [M] UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase murC CDS COG0773 99383 100858 + [M] UDP-N-acetylmuramate-alanine ligase ddl CDS COG1181 100851 101771 + [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes ftsQ CDS COG1589 101773 102603 + [M] Cell division septal protein ftsA CDS COG0849 102600 103862 + [D] Actin-like ATPase involved in cell division ftsZ CDS COG0206 103923 105074 + [D] Cell division GTPase lpxC CDS COG0774 105175 106092 + [M] UDP-3-O-acyl-N-acetylglucosamine deacetylase 37 yacA CDS NA 106248 106835 + NA secA CDS COG0653 106897 109602 + [U] Preprotein translocase subunit SecA (ATPase, RNA mutT CDS COG0494 109662 110051 + [LR] NTP pyrophosphohydrolases including oxidative damage repair 38 cds-NP_706055.1 CDS NA 110066 110200 - NA yacG CDS COG3024 110151 110348 - [S] Uncharacterized protein conserved in bacteria yacF CDS COG4582 110358 111101 - [S] Uncharacterized protein conserved in bacteria coaE CDS COG0237 111101 111721 - [H] Dephospho-CoA kinase 39 guaC CDS COG0516 111946 112989 + [F] IMP dehydrogenase/GMP reductase 40 hofC CDS COG1459 113024 114226 - [NU] Type II secretory pathway, component PulF 41 ppdD CDS COG4969 115373 115813 - [NU] Tfp pilus assembly protein, major pilin 42 nadC CDS COG0157 116016 116909 - [H] Nicotinate-nucleotide pyrophosphorylase 43 ampD CDS COG3023 116997 117548 + [V] Negative regulator of beta-lactamase expression ampE CDS COG3725 117545 118399 + [V] Membrane protein required for beta-lactamase induction 44 aroP CDS COG1113 118442 119815 - [E] Gamma-aminobutyrate permease and related permeases 45 pdhR CDS COG2186 120356 121120 + [K] Transcriptional regulators aceE CDS COG2609 121281 123944 + [C] Pyruvate dehydrogenase complex, dehydrogenase (E1) component aceF CDS COG0508 123959 125839 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) lpdA CDS COG1249 126164 127588 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 46 acnB CDS COG1049 129867 132464 + [C] Aconitase B 47 yacL CDS COG3112 132591 133001 + [S] Uncharacterized protein conserved in bacteria 48 speD CDS COG1586 133039 133833 - [E] S-adenosylmethionine decarboxylase speE CDS COG0421 133849 134715 - [E] Spermidine synthase 49 yacC CDS NA 134821 135339 - NA 50 yacK CDS COG2132 135334 136884 + [Q] Putative multicopper oxidases 51 hpt CDS COG0634 139510 140058 + [F] Hypoxanthine-guanine phosphoribosyltransferase 52 yadF CDS COG0288 140099 140761 - [P] Carbonic anhydrase 53 yadG CDS COG1131 140870 141796 + [V] ABC-type multidrug transport system, ATPase component yadH CDS COG0842 141793 142563 + [V] ABC-type multidrug transport system, permease component 54 yadI CDS COG2893 142668 143108 + [G] Phosphotransferase system, mannose/fructose-specific component IIA 55 yadE CDS COG0726 143172 144401 + [G] Predicted xylanase/chitin deacetylase 56 panD CDS COG0853 144405 144785 - [H] Aspartate 1-decarboxylase 57 yadD CDS COG5464 145059 145961 + [S] Uncharacterized conserved protein 58 panC CDS COG0414 146035 146886 - [H] Panthothenate synthetase panB CDS COG0413 146898 147692 - [H] Ketopantoate hydroxymethyltransferase 59 insB_3 CDS COG1662 148380 148883 + [L] Transposase and inactivated derivatives, IS1 family 60 folK CDS COG0801 149031 149510 - [H] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase pcnB CDS COG0617 149507 150871 - [J] tRNA nucleotidyltransferase/poly(A) polymerase yadB CDS COG0008 150964 151890 - [J] Glutamyl- and glutaminyl-tRNA synthetases dksA CDS COG1734 151927 152382 - [T] DnaK suppressor protein 61 sfsA CDS COG1489 152560 153264 - [R] DNA-binding protein, stimulates sugar fermentation yadP CDS COG1514 153279 153818 - [J] 2'-5' RNA ligase 62 hrpB CDS COG1643 153838 156312 + [L] HrpA-like helicases 63 mrcB CDS COG0744 156508 159042 + [M] Membrane carboxypeptidase (penicillin-binding protein) 64 fhuA CDS COG1629 159262 161505 + [P] Outer membrane receptor proteins, mostly Fe fhuC CDS COG1120 161556 162353 + [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fhuD CDS COG0614 162353 163243 + [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component fhuB CDS COG0609 163240 165222 + [P] ABC-type Fe3+-siderophore transport system, permease component 65 hemL CDS COG0001 165257 166537 - [H] Glutamate-1-semialdehyde aminotransferase 66 yadQ CDS COG0038 166762 168183 + [P] Chloride channel protein EriC 67 yadR CDS COG0316 168265 168609 + [S] Uncharacterized conserved protein 68 yadS CDS COG2860 168656 169279 - [S] Predicted membrane protein yadT CDS COG0614 169317 170117 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component pfs CDS COG0775 170110 170808 - [F] Nucleoside phosphorylase 69 htrA CDS COG0265 172543 173967 + [O] Trypsin-like serine proteases, typically periplasmic, contain 70 yaeH CDS ROG5092 175367 175753 - NA 71 dapD CDS COG2171 176067 176891 - [E] Tetrahydrodipicolinate N-succinyltransferase glnD CDS COG2844 176922 179594 - [O] UTP:GlnB (protein PII) uridylyltransferase map CDS COG0024 179656 180450 - [J] Methionine aminopeptidase 72 rpsB CDS COG0052 180818 181543 + [J] Ribosomal protein S2 tsf CDS COG0264 181801 182652 + [J] Translation elongation factor Ts pyrH CDS COG0528 182799 183524 + [F] Uridylate kinase frr CDS COG0233 183816 184373 + [J] Ribosome recycling factor yaeM CDS COG0743 184465 185661 + [I] 1-deoxy-D-xylulose 5-phosphate reductoisomerase yaeS CDS COG0020 185847 186608 + [I] Undecaprenyl pyrophosphate synthase cdsA CDS COG0575 186729 187478 + [I] CDP-diglyceride synthetase yaeL CDS COG0750 187490 188842 + [M] Predicted membrane-associated Zn-dependent proteases 1 yaeT CDS COG4775 188872 191304 + [M] Outer membrane protein/protective antigen OMA87 hlpA CDS COG2825 191426 191911 + [M] Outer membrane protein lpxD CDS COG1044 191915 192940 + [M] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase fabZ CDS COG0764 193045 193500 + [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases lpxA CDS COG1043 193504 194292 + [M] Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase lpxB CDS COG0763 194292 195440 + [M] Lipid A disaccharide synthetase rnhB CDS COG0164 195437 196033 + [L] Ribonuclease HII dnaE CDS COG0587 196070 199552 + [L] DNA polymerase III, alpha subunit accA CDS COG0825 199565 200524 + [I] Acetyl-CoA carboxylase alpha subunit ldcC CDS COG1982 200623 202764 + [E] Arginine/lysine/ornithine decarboxylases yaeR CDS COG0346 202794 203210 + [E] Lactoylglutathione lyase and related lyases 73 tilS CDS COG0037 203275 204573 + [D] Predicted ATPase of the PP-loop superfamily 74 yaeO CDS COG4568 204622 204882 - [K] Transcriptional antiterminator yaeP CDS NA 204869 205087 - NA 75 yaeQ CDS COG4681 205235 205780 + [S] Uncharacterized protein conserved in bacteria yaeJ CDS COG1186 205777 206199 + [J] Protein chain release factor B cutF CDS COG3015 206213 206923 + [MP] Uncharacterized lipoprotein NlpE involved in copper 76 yaeF CDS COG0791 207078 207902 - [M] Cell wall-associated hydrolases (invasion-associated proteins) 77 proS CDS COG0442 207955 209673 - [J] Prolyl-tRNA synthetase yaeB CDS COG1720 209784 210491 - [S] Uncharacterized conserved protein rcsF CDS ROG4703 210488 210892 - NA 78 metQ CDS COG1464 211010 211825 - [P] ABC-type metal ion transport system, periplasmic yaeE CDS COG2011 211865 212518 - [P] ABC-type metal ion transport system, permease metN CDS COG1135 212511 213542 - [P] ABC-type metal ion transport system, ATPase 79 yaeD CDS COG0241 213730 214305 + [E] Histidinol phosphatase and related phosphatases 80 rrsH rRNA NA 214669 216209 + NA rna-SF4436 tRNA NA 216278 216354 + NA rna-SF4437 tRNA NA 216397 216472 + NA rna-SF4438 tRNA NA 216745 216820 + NA rrlH rRNA NA 217014 219917 + NA rrfH rRNA NA 220012 220130 + NA rna-SF4441 tRNA NA 220183 220259 + NA 81 dkgB CDS COG0656 220422 221225 + [R] Aldo/keto reductases, related to diketogulonate reductase 82 cds-NP_706148.1 CDS COG3385 221264 222610 - [L] FOG: Transposase and inactivated derivatives yafC CDS COG0583 222660 223574 - [K] Transcriptional regulator 83 yafD CDS COG3021 223815 224615 + [S] Uncharacterized protein conserved in bacteria 84 yafE CDS COG0500 224843 225463 + [QR] SAM-dependent methyltransferases 85 mltD CDS COG1388 225511 226857 - [M] FOG: LysM repeat 86 gloB CDS COG0491 226929 227684 - [R] Zn-dependent hydrolases, including glyoxylases 87 yafS CDS COG0500 227715 228440 + [QR] SAM-dependent methyltransferases 88 rnhA CDS COG0328 228437 229015 - [L] Ribonuclease HI 89 dnaQ CDS COG0847 228969 229700 + [L] DNA polymerase III, epsilon subunit and 90 rna-SF4442 tRNA NA 229833 229909 + NA 91 safA CDS COG3515 230040 231086 - [S] Uncharacterized protein conserved in bacteria 92 safC CDS COG3519 231656 233539 - [S] Uncharacterized protein conserved in bacteria cds-NP_706160.2 CDS COG3518 233555 234049 - [S] Uncharacterized protein conserved in bacteria 93 cds-NP_706164.1 CDS COG2963 235830 236240 + [L] Transposase and inactivated derivatives cds-NP_706165.1 CDS COG2801 236198 237103 + [L] Transposase and inactivated derivatives 94 cds-NP_706166.1 CDS NA 237160 237447 - NA 95 cds-NP_706170.1 CDS COG5565 238841 239743 + [R] Bacteriophage terminase large (ATPase) subunit and cds-NP_706171.2 CDS ROG5180 239744 241909 + NA cds-NP_706172.1 CDS NA 241923 242834 + NA cds-NP_706173.1 CDS NA 242834 244129 + NA cds-NP_706174.2 CDS COG4877 244174 244404 + [S] Uncharacterized protein conserved in bacteria cds-NP_706175.1 CDS NA 244382 244882 + NA cds-NP_706176.1 CDS NA 244882 246300 + NA cds-NP_706177.1 CDS ROG3130 246300 247148 + NA cds-NP_706178.2 CDS NA 247148 247603 + NA cds-NP_706179.1 CDS NA 247606 248298 + NA cds-NP_706180.1 CDS ROG3190 248308 249639 + NA cds-NP_706181.2 CDS COG0741 249640 251370 + [M] Soluble lytic murein transglycosylase and related 96 cds-NP_706182.1 CDS COG2963 251496 251822 + [L] Transposase and inactivated derivatives 97 psiF CDS ROG1291 252756 253094 - NA 98 phoA CDS COG1785 253195 254679 - [P] Alkaline phosphatase yaiB CDS NA 254711 254971 - NA 99 cds-YP_008439229.1 CDS NA 255153 255356 - NA 100 ddl_2 CDS COG1181 255434 256528 + [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes 101 cds-NP_706188.2 CDS ROG0102 256552 256791 - NA 102 cds-NP_706189.1 CDS COG3174 257024 257332 + [S] Predicted membrane protein 103 yaiW CDS ROG1186 257391 258485 - NA sbmA CDS COG1133 258498 259718 - [I] ABC-type long-chain fatty acid transport system, 104 yaiH CDS COG1680 260070 261227 + [V] Beta-lactamase class C and other penicillin 105 yaiV CDS NA 261228 261776 - NA 106 cds-NP_706194.1 CDS COG2801 262366 263178 - [L] Transposase and inactivated derivatives cds-NP_706195.1 CDS COG2801 263452 264270 - [L] Transposase and inactivated derivatives cds-NP_706196.1 CDS COG2963 264306 264608 - [L] Transposase and inactivated derivatives 107 cds-NP_706197.1 CDS NA 264841 265410 - NA cds-NP_706198.1 CDS COG2801 265385 266290 - [L] Transposase and inactivated derivatives cds-NP_706199.3 CDS COG2963 266248 266658 - [L] Transposase and inactivated derivatives 108 insA_3 CDS COG3677 266737 267012 + [L] Transposase and inactivated derivatives insB_4 CDS COG1662 267039 267434 + [L] Transposase and inactivated derivatives, IS1 family 109 cds-NP_706202.1 CDS NA 267479 267850 - NA 110 hemB CDS COG0113 268341 269348 + [H] Delta-aminolevulinic acid dehydratase 111 tauD CDS COG2175 269454 270305 - [Q] Probable taurine catabolism dioxygenase tauC CDS COG0600 270302 271129 - [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component tauB CDS COG4525 271126 271893 - [P] ABC-type taurine transport system, ATPase component tauA CDS COG4521 271906 272802 - [P] ABC-type taurine transport system, periplasmic component 112 insB_5 CDS COG1662 273360 273755 - [L] Transposase and inactivated derivatives, IS1 family insA_4 CDS COG3677 273782 274057 - [L] Transposase and inactivated derivatives 113 ykgH CDS NA 274202 274870 + NA 114 ykgG CDS COG1556 275113 275955 - [S] Uncharacterized conserved protein ykgF CDS COG1139 275801 277228 - [C] Uncharacterized conserved protein containing a ferredoxin-like ykgE CDS COG0247 277239 277958 - [C] Fe-S oxidoreductase 115 insA_5 CDS COG3677 278377 278652 + [L] Transposase and inactivated derivatives insB_6 CDS COG1662 278679 279074 + [L] Transposase and inactivated derivatives, IS1 family 116 cds-NP_706216.1 CDS NA 279259 279744 + NA cds-NP_706217.1 CDS NA 279741 280127 + NA cds-NP_706218.1 CDS COG3501 280152 282365 + [S] Uncharacterized protein conserved in bacteria 117 cds-NP_706219.1 CDS COG3209 282855 283262 + [M] Rhs family protein cds-NP_706220.1 CDS COG3209 283259 285547 + [M] Rhs family protein cds-NP_706221.1 CDS COG3209 285544 286533 + [M] Rhs family protein 118 yafV CDS COG0388 287582 288352 - [R] Predicted amidohydrolase 119 ykfE CDS ROG7878 288506 288979 + NA 120 yafH CDS COG1960 289022 291502 - [I] Acyl-CoA dehydrogenases 121 gmhA CDS COG0279 291706 292284 + [G] Phosphoheptose isomerase 122 yafJ CDS COG0121 292490 293257 + [R] Predicted glutamine amidotransferase 123 yafK CDS COG3034 293228 293968 - [S] Uncharacterized protein conserved in bacteria 124 yafM CDS COG1943 295049 295546 + [L] Transposase and inactivated derivatives 125 fhiA CDS COG1298 295763 297502 - [NU] Flagellar biosynthesis pathway, component FlhA 126 mbhA CDS COG1360 297447 298232 + [N] Flagellar motor protein 127 dinP CDS COG0389 298303 299358 + [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair yafN CDS COG2161 299410 299703 + [D] Antitoxin of toxin-antitoxin stability system yafO CDS NA 299706 300104 + NA yafP CDS COG0454 300114 300566 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 128 cds-NP_706235.2 CDS COG1690 300812 301855 + [S] Uncharacterized conserved protein 129 pepD CDS COG2195 302588 304045 - [E] Di- and tripeptidases 130 gpt CDS COG2236 304307 304765 + [R] Predicted phosphoribosyltransferases 131 frsA CDS COG0412 304857 306101 + [Q] Dienelactone hydrolase and related enzymes crl CDS NA 306159 306560 + NA 132 phoE CDS COG3203 306599 307654 - [M] Outer membrane protein (porin) 133 insA_6 CDS COG3677 307830 308105 + [L] Transposase and inactivated derivatives insB_7 CDS COG1662 308132 308527 + [L] Transposase and inactivated derivatives, IS1 family 134 proB CDS COG0263 308718 309821 + [E] Glutamate 5-kinase proA CDS COG0014 309833 311086 + [E] Gamma-glutamyl phosphate reductase 135 rna-SF4443 tRNA NA 311201 311276 + NA 136 cds-NP_706246.1 CDS ROG5398 311291 311755 - NA cds-NP_706247.1 CDS COG2801 311782 312600 - [L] Transposase and inactivated derivatives cds-NP_706248.1 CDS COG2963 312636 312938 - [L] Transposase and inactivated derivatives cds-NP_706249.1 CDS COG0582 312995 313720 - [L] Integrase 137 yfdT CDS NA 313947 314252 - NA cds-NP_706251.1 CDS NA 314252 314629 - NA 138 cds-NP_706253.1 CDS COG2963 315478 315804 - [L] Transposase and inactivated derivatives 139 cds-NP_706254.1 CDS COG2963 316047 316349 + [L] Transposase and inactivated derivatives cds-NP_706255.1 CDS COG2801 316385 317203 + [L] Transposase and inactivated derivatives 140 gtrAI CDS COG2246 317867 318229 + [S] Predicted membrane protein gtrBI CDS COG0463 318226 319155 + [M] Glycosyltransferases involved in cell wall biogenesis gtrII CDS ROG5959 319152 320612 + NA 141 cds-NP_706260.1 CDS ROG0762 321002 322192 - NA 142 cds-NP_706261.1 CDS COG3594 322643 323692 + [G] Fucose 4-O-acetylase and related acetyltransferases 143 cds-NP_706262.1 CDS ROG5293 324465 324899 - NA cds-NP_706263.1 CDS NA 324871 325521 - NA cds-NP_706264.1 CDS COG2801 325574 326392 - [L] Transposase and inactivated derivatives cds-NP_706265.1 CDS COG2963 326428 326730 - [L] Transposase and inactivated derivatives 144 cds-NP_706266.1 CDS COG0582 326916 328079 + [L] Integrase 145 cds-NP_706267.1 CDS ROG0348 328428 329600 + NA 146 cds-NP_706269.1 CDS COG2801 330404 331222 - [L] Transposase and inactivated derivatives cds-NP_706270.1 CDS COG2963 331258 331620 - [L] Transposase and inactivated derivatives 147 cds-NP_706272.1 CDS COG2963 332469 332795 - [L] Transposase and inactivated derivatives 148 adrA CDS COG3706 332946 334061 + [T] Response regulator containing a CheY-like receiver 149 proC CDS COG0345 334078 334887 - [E] Pyrroline-5-carboxylate reductase 150 yaiI CDS COG1671 335007 335465 + [S] Uncharacterized protein conserved in bacteria 151 aroL CDS COG0703 335648 336172 + [E] Shikimate kinase yaiA CDS NA 336222 336413 + NA 152 aroM CDS ROG4371 336671 337348 + NA 153 yaiE CDS COG3123 337420 337704 + [S] Uncharacterized protein conserved in bacteria 154 cds-NP_706280.1 CDS NA 337913 338194 + NA cds-NP_706281.1 CDS NA 338191 338646 + NA 155 rdgC CDS COG2974 338724 339635 - [L] DNA recombination-dependent growth factor C 156 yajF CDS COG1940 339622 340668 + [KG] Transcriptional regulator/sugar kinase 157 araJ CDS COG2814 340811 341992 - [G] Arabinose efflux permease 158 sbcC CDS COG0419 342118 345261 - [L] ATPase involved in DNA repair sbcD CDS COG0420 345258 346460 - [L] DNA repair exonuclease 159 phoB CDS COG0745 346650 347339 + [TK] Response regulators consisting of a CheY-like phoR CDS COG0642 347397 348692 + [T] Signal transduction histidine kinase 160 brnQ CDS COG1114 349099 350418 + [E] Branched-chain amino acid permeases proY CDS COG1113 350494 351867 + [E] Gamma-aminobutyrate permease and related permeases 161 malZ CDS COG0366 352022 353839 + [G] Glycosidases 162 queA CDS COG0809 354510 355580 + [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) tgt CDS COG0343 355635 356762 + [J] Queuine/archaeosine tRNA-ribosyltransferase yajC CDS COG1862 356785 357117 + [U] Preprotein translocase subunit YajC secD CDS COG0342 357145 358992 + [U] Preprotein translocase subunit SecD secF CDS COG0341 359003 359974 + [U] Preprotein translocase subunit SecF 163 yajD CDS ROG0341 360103 360450 + NA 164 tsx CDS COG3248 360627 361511 - [M] Nucleoside-binding outer membrane protein 165 yajI CDS ROG1785 361809 362408 - NA 166 nrdR CDS COG1327 362499 362948 + [K] Predicted transcriptional regulator, consists of a ribD CDS COG1985 362952 364055 + [H] Pyrimidine reductase, riboflavin biosynthesis ribH CDS COG0054 364144 364614 + [H] Riboflavin synthase beta-chain nusB CDS COG0781 364634 365053 + [K] Transcription termination factor thiL CDS COG0611 365131 366108 + [H] Thiamine monophosphate kinase pgpA CDS COG1267 366086 366604 + [I] Phosphatidylglycerophosphatase A and related proteins 167 cds-NP_706307.1 CDS COG0667 366715 367632 - [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 168 dxs CDS COG1154 367687 369549 - [HI] Deoxyxylulose-5-phosphate synthase ispA CDS COG0142 369574 370473 - [H] Geranylgeranyl pyrophosphate synthase xseB CDS COG1722 370473 370715 - [L] Exonuclease VII small subunit 169 thiJ CDS COG0693 372424 373020 - [R] Putative intracellular protease/amidase apbA CDS COG1893 372977 373888 - [H] Ketopantoate reductase 170 yajQ CDS COG1666 374056 374547 + [S] Uncharacterized protein conserved in bacteria 171 cds-NP_706315.1 CDS NA 374607 376337 - NA cds-NP_706316.2 CDS COG2849 376390 378543 - [S] Uncharacterized protein conserved in bacteria 172 insB_8 CDS COG1662 378888 379391 + [L] Transposase and inactivated derivatives, IS1 family 173 cds-NP_706319.2 CDS COG4453 379972 380283 - [S] Uncharacterized protein conserved in bacteria 174 cyoE CDS COG0109 380467 381354 - [O] Polyprenyltransferase (cytochrome oxidase assembly factor) cyoD CDS COG3125 381369 381698 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 cyoC CDS COG1845 381698 382312 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 3 175 cds-NP_706324.1 CDS COG3436 385781 386128 - [L] Transposase and inactivated derivatives cds-NP_706325.1 CDS COG2963 386125 386799 - [L] Transposase and inactivated derivatives 176 ampG CDS NA 387169 388644 - NA yajG CDS COG3056 388688 389368 - [M] Uncharacterized lipoprotein 177 bolA CDS COG0271 389538 389888 + [T] Stress-induced morphogen (activity unknown) cds-NP_706329.2 CDS NA 389897 390085 + NA 178 tig CDS COG0544 390232 391530 + [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) clpP CDS COG0740 391777 392400 + [OU] Protease subunit of ATP-dependent Clp proteases clpX CDS COG1219 392526 393800 + [O] ATP-dependent protease Clp, ATPase subunit lon CDS COG0466 393988 396342 + [O] ATP-dependent Lon protease, bacterial type 179 hupB CDS COG0776 396551 396823 + [L] Bacterial nucleoid DNA-binding protein 180 ybaU CDS COG0760 397015 398886 + [O] Parvulin-like peptidyl-prolyl isomerase 181 ybaV CDS COG1555 399037 399408 + [L] DNA uptake protein and related DNA-binding 182 ybaW CDS COG0824 399502 399900 + [R] Predicted thioesterase 183 ybaX CDS COG0603 399952 400647 - [R] Predicted PP-loop superfamily ATPase 184 cds-NP_706339.3 CDS COG4533 400712 402136 - [R] ABC-type uncharacterized transport system, periplasmic component 185 cof CDS COG0561 402492 403322 + [R] Predicted hydrolases of the HAD superfamily 186 ybaO CDS COG1522 403389 403934 + [K] Transcriptional regulators mdlA CDS COG1132 403964 405736 + [V] ABC-type multidrug transport system, ATPase and mdlB CDS COG1132 405729 407510 + [V] ABC-type multidrug transport system, ATPase and 187 glnK CDS COG0347 407691 408029 + [E] Nitrogen regulatory protein PII amtB CDS COG0004 408059 409345 + [P] Ammonia permease 188 tesB CDS COG1946 409394 410254 - [I] Acyl-CoA thioesterase 189 ybaY CDS COG3126 410472 411044 + [S] Uncharacterized protein conserved in bacteria 190 cds-NP_706348.1 CDS COG3385 411137 412483 + [L] FOG: Transposase and inactivated derivatives 191 ybaZ CDS COG3695 412513 412824 - [L] Predicted methylated DNA-protein cysteine methyltransferase 192 ybaA CDS COG5507 413203 413556 + [S] Uncharacterized conserved protein 193 ylaB CDS COG4943 413598 415148 - [T] Predicted signal transduction protein containing sensor 194 ylaC CDS NA 415312 415782 - NA 195 hha CDS NA 416621 416839 - NA ybaJ CDS NA 416865 417239 - NA 196 acrB CDS COG0841 417785 420934 - [V] Cation/multidrug efflux pump acrA CDS COG0845 420957 422150 - [M] Membrane-fusion protein 197 acrR CDS COG1309 422292 422939 + [K] Transcriptional regulator 198 aefA CDS COG3264 423067 426429 + [M] Small-conductance mechanosensitive channel 199 ybaM CDS NA 426641 426802 - NA priC CDS COG3923 426816 427343 - [L] Primosomal replication protein N'' 200 ybaN CDS COG2832 427413 427790 + [S] Uncharacterized protein conserved in bacteria 201 apt CDS COG0503 427943 428494 + [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins dnaX CDS COG2812 428623 430548 + [L] DNA polymerase III, gamma/tau subunits ybaB CDS COG0718 430601 430930 + [S] Uncharacterized protein conserved in bacteria recR CDS COG0353 430930 431535 + [L] Recombinational DNA repair protein (RecF pathway) 202 htpG CDS COG0326 431645 433519 + [O] Molecular chaperone, HSP90 family 203 adk CDS COG0563 433700 434344 + [F] Adenylate kinase and related kinases 204 hemH CDS COG0276 434476 435438 + [H] Protoheme ferro-lyase (ferrochelatase) 205 ybaC CDS COG0657 435576 436394 - [I] Esterase/lipase 206 gsk CDS COG0524 436546 437850 + [G] Sugar kinases, ribokinase family 207 ybaL CDS COG4651 437983 439659 - [P] Kef-type K+ transport system, predicted NAD-binding 208 fsr CDS NA 439897 441117 - NA 209 ushA CDS COG0737 441335 442987 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 210 ybaK CDS COG2606 443024 443503 - [S] Uncharacterized conserved protein 211 ybaP CDS COG3735 443707 444501 - [S] Uncharacterized protein conserved in bacteria 212 ybaQ CDS COG3093 444585 444980 + [R] Plasmid maintenance system antidote protein 213 copA CDS COG2217 445195 447699 - [P] Cation transport ATPase 214 ybaS CDS COG2066 447961 448893 + [E] Glutaminase ybaT CDS COG0531 448896 450188 + [E] Amino acid transporters ybbI CDS COG0789 450313 450720 + [K] Predicted transcriptional regulators 215 ybbJ CDS COG1585 450721 451176 - [OU] Membrane protein implicated in regulation of ybbK CDS COG0330 451176 452093 - [O] Membrane protease subunits, stomatin/prohibitin homologs 216 ybbL CDS COG4619 452239 452916 + [R] ABC-type uncharacterized transport system, ATPase component ybbM CDS COG0390 452876 453682 + [R] ABC-type uncharacterized transport system, permease component 217 ybbN CDS COG3118 453745 454635 - [O] Thioredoxin domain-containing protein ybbO CDS COG0300 454660 455469 - [R] Short-chain dehydrogenases of various substrate specificities 218 ybbA CDS COG4181 456052 456738 + [Q] Predicted ABC-type transport system involved in 219 ybbB CDS COG2603 459863 460957 - [R] Predicted ATPase 220 ybbS CDS COG0583 461026 461952 - [K] Transcriptional regulator 221 ybbT CDS COG3194 462182 462664 + [F] Ureidoglycolate hydrolase 222 ybbU CDS COG1414 462742 463557 + [K] Transcriptional regulator gcl CDS COG3960 463647 465428 + [R] Glyoxylate carboligase 223 insB_9 CDS COG1662 465733 466128 - [L] Transposase and inactivated derivatives, IS1 family insA_7 CDS COG3677 466155 466430 - [L] Transposase and inactivated derivatives ylbA CDS COG3257 466459 467130 - [R] Uncharacterized protein, possibly involved in glyoxylate ylbB CDS COG0624 467141 468298 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 224 ylbF CDS NA 468436 469023 + NA arcC CDS COG0549 469020 469913 + [E] Carbamate kinase 225 purK CDS COG0026 470050 471117 - [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purE CDS COG0041 471114 471623 - [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 226 ybbF CDS COG2908 471741 472463 - [S] Uncharacterized protein conserved in bacteria ppiB CDS COG0652 472466 472960 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 227 cysS CDS COG0215 473134 474519 + [J] Cysteinyl-tRNA synthetase 228 ybcI CDS COG1988 474555 475064 - [R] Predicted membrane-bound metal-dependent hydrolases 229 ybcJ CDS COG2501 475172 475405 - [S] Uncharacterized conserved protein folD CDS COG0190 475386 476252 - [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 230 sfmA CDS COG3539 476700 477275 + [NU] P pilus assembly protein, pilin FimA sfmC CDS COG3121 477495 478187 + [NU] P pilus assembly protein, chaperone PapD cds-NP_706410.1 CDS COG3188 478218 478718 + [NU] P pilus assembly protein, porin PapC 231 insB_10 CDS COG1662 478729 479124 - [L] Transposase and inactivated derivatives, IS1 family insA_8 CDS COG3677 479151 479426 - [L] Transposase and inactivated derivatives cds-NP_706413.1 CDS COG3279 479460 479753 - [KT] Response regulator of the LytR/AlgR family 232 rna-SF4444 tRNA NA 479933 480009 + NA 233 envY CDS COG2207 480055 480816 - [K] AraC-type DNA-binding domain-containing proteins 234 ybcH CDS ROG5154 480999 481889 - NA 235 nfrB CDS ROG3437 484845 487082 - NA 236 ybcZ CDS COG0642 487232 488674 - [T] Signal transduction histidine kinase ylcA CDS COG0745 488664 489347 - [TK] Response regulators consisting of a CheY-like 237 ylcB CDS COG1538 489504 490886 + [MU] Outer membrane protein ylcC CDS COG5569 490910 491242 + [S] Uncharacterized conserved protein 238 cds-NP_706422.1 CDS COG2963 493429 493755 - [L] Transposase and inactivated derivatives 239 cds-NP_706423.1 CDS COG2801 494896 495687 - [L] Transposase and inactivated derivatives cds-NP_706424.1 CDS COG2963 495759 496169 - [L] Transposase and inactivated derivatives 240 ybdE CDS COG3696 496942 500085 + [P] Putative silver efflux pump 241 pheP CDS COG1113 500186 501562 + [E] Gamma-aminobutyrate permease and related permeases 242 ybdG CDS COG0668 501630 502877 - [M] Small-conductance mechanosensitive channel 243 cds-NP_706428.1 CDS ROG0762 503334 504542 - NA 244 ybdF CDS COG2315 505070 505438 - [S] Uncharacterized protein conserved in bacteria 245 ybdJ CDS COG5130 505503 505751 - [UT] Prenylated rab acceptor 1 and related 246 ybdK CDS COG2170 505817 506935 - [S] Uncharacterized conserved protein 247 cds-NP_706432.1 CDS COG2963 507366 507848 + [L] Transposase and inactivated derivatives 248 cds-NP_706433.1 CDS COG2801 507845 508663 - [L] Transposase and inactivated derivatives 249 cds-NP_706435.1 CDS COG2963 509711 510037 - [L] Transposase and inactivated derivatives cds-NP_706436.1 CDS COG2963 510089 510310 - [L] Transposase and inactivated derivatives 250 cds-NP_706437.1 CDS COG2801 510460 511311 + [L] Transposase and inactivated derivatives 251 cds-YP_008439230.1 CDS NA 511407 511559 + NA 252 entD CDS COG2977 512184 512813 - [Q] Phosphopantetheinyl transferase component of siderophore synthetase fepA CDS COG4771 512979 515219 - [P] Outer membrane receptor for ferrienterochelin and 253 fes CDS COG2382 515462 516664 + [P] Enterochelin esterase and related enzymes entF CDS COG1020 516881 520726 + [Q] Non-ribosomal peptide synthetase modules and related 254 insA_9 CDS COG3677 520810 521085 + [L] Transposase and inactivated derivatives insB_11 CDS COG1662 521112 521507 + [L] Transposase and inactivated derivatives, IS1 family 255 fepC CDS COG1120 522848 523663 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fepG CDS COG4779 523660 524652 - [P] ABC-type enterobactin transport system, permease component fepD CDS COG0609 524649 525665 - [P] ABC-type Fe3+-siderophore transport system, permease component 256 ybdA CDS NA 525764 526996 + NA 257 fepB CDS COG4592 527000 527956 - [P] ABC-type Fe2+-enterobactin transport system, periplasmic component 258 entE CDS COG1021 529433 531043 + [Q] Peptide arylation enzymes entB CDS COG1535 531057 531914 + [Q] Isochorismate hydrolase entA CDS COG1028 531914 532660 + [IQR] Dehydrogenases with different specificities (related to ybdB CDS COG2050 532663 533076 + [Q] Uncharacterized protein, possibly involved in aromatic 259 cstA CDS COG1966 533257 535362 + [T] Carbon starvation protein, predicted membrane protein cds-NP_706454.1 CDS COG2879 535544 535741 + [S] Uncharacterized small protein 260 ybdH CDS COG0371 535751 536839 - [C] Glycerol dehydrogenase and related enzymes 261 ybdL CDS COG0436 536948 538108 + [E] Aspartate/tyrosine/aromatic aminotransferase 262 cds-NP_706457.1 CDS COG2801 538628 539467 - [L] Transposase and inactivated derivatives cds-NP_706458.1 CDS COG2963 539494 539832 - [L] Transposase and inactivated derivatives 263 cds-NP_706459.1 CDS COG2963 541040 541324 + [L] Transposase and inactivated derivatives cds-NP_706460.1 CDS COG2801 541381 542193 + [L] Transposase and inactivated derivatives 264 cds-NP_706461.1 CDS COG0583 542562 543464 - [K] Transcriptional regulator 265 dsbG CDS COG1651 543674 544480 - [O] Protein-disulfide isomerase 266 ahpC CDS COG0450 544792 545355 + [O] Peroxiredoxin ahpF CDS COG3634 545570 547165 + [O] Alkyl hydroperoxide reductase, large subunit 267 ybdQ CDS COG0589 547286 547714 - [T] Universal stress protein UspA and related 268 ybdR CDS COG1063 547935 549173 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 269 rnk CDS COG0782 549404 549814 - [K] Transcription elongation factor 270 rna CDS COG3719 550043 550867 - [J] Ribonuclease I 271 cds-YP_008439231.1 CDS COG1767 552476 553354 - [H] Triphosphoribosyl-dephospho-CoA synthetase 272 citF CDS COG3051 553883 555415 - [C] Citrate lyase, alpha subunit citE CDS COG2301 555426 556334 - [G] Citrate lyase beta subunit citD CDS COG3052 556331 556627 - [C] Citrate lyase, gamma subunit citC CDS COG3053 556642 557787 - [C] Citrate lyase synthetase 273 insB_12 CDS COG1662 558166 558669 - [L] Transposase and inactivated derivatives, IS1 family 274 ybhA CDS COG0561 559732 560550 + [R] Predicted hydrolases of the HAD superfamily 275 modC CDS COG4148 560551 561609 - [P] ABC-type molybdate transport system, ATPase component modB CDS COG4149 561612 562301 - [P] ABC-type molybdate transport system, permease component modA CDS COG0725 562301 563074 - [P] ABC-type molybdate transport system, periplasmic component 276 cds-NP_706479.2 CDS NA 563241 563390 - NA 277 modE CDS COG2005 563519 564307 + [R] N-terminal domain of molybdenum-binding protein modF CDS COG1119 564375 565847 + [P] ABC-type molybdenum transport system, ATPase component/photorepair 278 galE CDS COG1087 566108 567124 + [M] UDP-glucose 4-epimerase galT CDS COG1085 567134 568180 + [C] Galactose-1-phosphate uridylyltransferase galK CDS COG0153 568184 569332 + [G] Galactokinase galM CDS COG2017 569326 570366 + [G] Galactose mutarotase and related enzymes gpmA CDS COG0588 570569 571321 + [G] Phosphoglycerate mutase 1 279 aroG CDS COG0722 571488 572540 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 280 cds-NP_706488.1 CDS ROG3493 572856 573236 + NA 281 ybgR CDS COG1230 573350 574291 + [P] Co/Zn/Cd efflux system component 282 pnuC CDS COG3201 574288 575007 - [H] Nicotinamide mononucleotide transporter nadA CDS COG0379 575045 576088 - [H] Quinolinate synthase 283 rna-SF4445 tRNA NA 576337 576412 - NA rna-SF4446 tRNA NA 576416 576491 - NA rna-SF4447 tRNA NA 576627 576702 - NA 284 ybgF CDS COG1729 576867 577658 - [S] Uncharacterized protein conserved in bacteria pal CDS COG2885 577668 578189 - [M] Outer membrane protein and related peptidoglycan-associated tolB CDS COG0823 578224 579516 - [U] Periplasmic component of the Tol biopolymer tolA CDS COG3064 579649 580890 - [M] Membrane protein involved in colicin uptake tolR CDS COG0848 580955 581383 - [U] Biopolymer transport protein tolQ CDS COG0811 581387 582079 - [U] Biopolymer transport proteins ybgC CDS COG0824 582076 582480 - [R] Predicted thioesterase 285 ybgE CDS COG3790 582630 582923 - [S] Predicted membrane protein cydB CDS COG1294 583051 584190 - [C] Cytochrome bd-type quinol oxidase, subunit 2 cydA CDS COG1271 584206 585777 - [C] Cytochrome bd-type quinol oxidase, subunit 1 286 cds-YP_008439232.1 CDS NA 586371 586598 - NA ybgG CDS COG0383 586623 589256 - [G] Alpha-mannosidase hrsA CDS COG1299 589274 591250 - [G] Phosphotransferase system, fructose-specific IIC component 287 farR CDS COG2188 591360 592082 + [K] Transcriptional regulators 288 sucD CDS COG0074 592185 593054 - [C] Succinyl-CoA synthetase, alpha subunit sucC CDS COG0045 593054 594220 - [C] Succinyl-CoA synthetase, beta subunit sucB CDS COG0508 594314 595531 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) sucA CDS COG0567 595546 598347 - [C] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, cds-NP_706509.1 CDS NA 598329 598589 - NA sdhB CDS COG0479 598648 599364 - [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit sdhA CDS COG1053 599380 601146 - [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit sdhD CDS COG2142 601146 601493 - [C] Succinate dehydrogenase, hydrophobic anchor subunit sdhC CDS COG2009 601487 601891 - [C] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit 289 gltA CDS COG0372 602585 603868 + [C] Citrate synthase 290 ybgD CDS COG3539 604259 604825 + [NU] P pilus assembly protein, pilin FimA ybgQ CDS COG3188 604876 607335 + [NU] P pilus assembly protein, porin PapC ybgP CDS COG3121 607350 608081 + [NU] P pilus assembly protein, chaperone PapD 291 abrB CDS COG3180 609261 610352 + [R] Putative ammonia monooxygenase 292 nei CDS COG0266 610349 611140 - [L] Formamidopyrimidine-DNA glycosylase ybgL CDS COG1540 611176 611910 - [R] Uncharacterized proteins, homologs of lactam utilization 293 ybgJ CDS COG2049 612826 613482 - [E] Allophanate hydrolase subunit 1 ybgI CDS COG0327 613505 614248 - [S] Uncharacterized conserved protein 294 ybgH CDS COG3104 614519 616000 + [E] Dipeptide/tripeptide permease 295 phrB CDS COG0415 616150 617568 - [L] Deoxyribodipyrimidine photolyase ybgA CDS COG3272 617565 618074 - [S] Uncharacterized conserved protein 296 cds-NP_706526.1 CDS NA 618203 618490 + NA 297 cds-NP_706529.1 CDS COG3209 619508 622315 - [M] Rhs family protein 298 insB_13 CDS COG1662 622931 623326 - [L] Transposase and inactivated derivatives, IS1 family insA_10 CDS COG3677 623353 623628 - [L] Transposase and inactivated derivatives 299 ybfA CDS NA 624101 624307 - NA 300 kdpA CDS COG2060 624709 626382 + [P] K+-transporting ATPase, A chain 301 potE CDS COG0531 635272 636591 + [E] Amino acid transporters 302 pgm CDS COG0033 636647 638287 - [G] Phosphoglucomutase seqA CDS COG3057 638313 638858 - [L] Negative regulator of replication initiationR 303 ybfF CDS COG0596 639044 639808 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 304 ybfE CDS ROG2075 639879 640241 + NA 305 fldA CDS COG0716 640381 640911 + [C] Flavodoxins 306 fur CDS COG0735 641200 641646 + [P] Fe2+/Zn2+ uptake regulation proteins 307 ybfN CDS NA 641730 642056 - NA ybfM CDS ROG8456 642093 643499 - NA 308 glnS CDS COG0008 644078 645742 - [J] Glutamyl- and glutaminyl-tRNA synthetases 309 nagE CDS COG1263 645945 647891 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 310 nagB CDS COG0363 648224 649024 + [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase nagA CDS COG1820 649084 650232 + [G] N-acetylglucosamine-6-phosphate deacetylase nagC CDS COG1940 650241 651461 + [KG] Transcriptional regulator/sugar kinase 311 asnB CDS COG0367 652658 654205 + [E] Asparagine synthase (glutamine-hydrolyzing) 312 rna-SF4448 tRNA NA 654586 654662 + NA rna-SF4449 tRNA NA 654672 654756 + NA rna-SF4450 tRNA NA 654780 654854 + NA rna-SF4451 tRNA NA 654889 654963 + NA rna-SF4452 tRNA NA 654979 655055 + NA rna-SF4453 tRNA NA 655103 655177 + NA rna-SF4454 tRNA NA 655215 655289 + NA 313 ubiF CDS COG0654 655443 656618 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 314 yleA CDS COG0621 656764 658188 + [J] 2-methylthioadenine synthetase ybeZ CDS COG1702 658302 659381 + [T] Phosphate starvation-inducible protein PhoH, predicted ATPase ybeY CDS COG0319 659378 659845 + [R] Predicted metal-dependent hydrolase ybeX CDS COG4535 659935 660813 + [P] Putative Mg2+ and Co2+ transporter CorC lnt CDS COG0815 660838 662376 + [M] Apolipoprotein N-acyltransferase 315 ybeJ CDS COG0834 662773 663681 + [ET] ABC-type amino acid transport/signal transduction systems, gltJ CDS COG0765 663851 664591 + [E] ABC-type amino acid transport system, permease gltK CDS COG0765 664591 665265 + [E] ABC-type amino acid transport system, permease gltL CDS COG1126 665265 665990 + [E] ABC-type polar amino acid transport system, 316 rihA CDS COG1957 666108 667043 + [F] Inosine-uridine nucleoside N-ribohydrolase 317 ybeV CDS NA 668857 670308 - NA ybeU CDS ROG2994 670305 671012 - NA 318 ybeT CDS COG0790 671114 671668 + [R] FOG: TPR repeat, SEL1 subfamily 319 ybeS CDS NA 671678 673105 - NA ybeR CDS ROG2994 673102 673809 - NA 320 ybeQ CDS COG0790 673967 674950 + [R] FOG: TPR repeat, SEL1 subfamily 321 ybeL CDS ROG1153 675020 675502 - NA 322 leuS CDS COG0495 675737 678319 + [J] Leucyl-tRNA synthetase rlpB CDS COG2980 678334 678915 + [M] Rare lipoprotein B holA CDS COG1466 678915 679946 + [L] DNA polymerase III, delta subunit nadD CDS COG1057 679948 680589 + [H] Nicotinic acid mononucleotide adenylyltransferase phpB CDS COG0406 680613 681224 + [G] Fructose-2,6-bisphosphatase 323 ybeB CDS COG0799 681484 681801 + [S] Uncharacterized homolog of plant Iojap protein ybeA CDS COG1576 681805 682272 + [S] Uncharacterized conserved protein mrdA CDS COG0768 682303 684204 + [M] Cell division protein FtsI/penicillin-binding protein 2 mrdB CDS COG0772 684207 685319 + [D] Bacterial cell division membrane protein rlpA CDS COG0797 685330 686418 + [M] Lipoproteins dacA CDS COG1686 686557 687768 + [M] D-alanyl-D-alanine carboxypeptidase ybeD CDS COG2921 687879 688142 + [S] Uncharacterized conserved protein lipB CDS COG0321 688309 688884 + [H] Lipoate-protein ligase B 324 ybeF CDS NA 689296 690096 + NA 325 lipA CDS COG0320 690305 691270 + [H] Lipoate synthase 326 tatE CDS COG1826 691371 691574 - [U] Sec-independent protein secretion pathway components 327 ybeM CDS COG0388 691703 692491 - [R] Predicted amidohydrolase 328 ccrB CDS COG0239 692584 692967 + [D] Integral membrane protein possibly involved in 329 cspE CDS COG1278 693021 693230 - [K] Cold shock proteins 330 pagP CDS ROG4459 693405 693965 - NA 331 dcuC CDS COG3069 694554 695939 + [C] C4-dicarboxylate transporter 332 cds-NP_706589.1 CDS NA 696659 697168 - NA 333 cds-NP_706590.2 CDS NA 697731 699185 + NA cds-NP_706591.1 CDS COG2963 699247 699549 + [L] Transposase and inactivated derivatives cds-NP_706592.1 CDS COG2801 699585 700403 + [L] Transposase and inactivated derivatives cds-NP_706593.1 CDS NA 700415 700690 + NA 334 cds-NP_706594.1 CDS COG4834 700687 701628 - [S] Uncharacterized protein conserved in bacteria 335 cds-NP_706596.1 CDS COG3566 702133 703353 - [S] Uncharacterized protein conserved in bacteria cds-NP_706597.3 CDS COG2369 703357 704100 - [S] Uncharacterized protein, homolog of phage Mu cds-NP_706598.1 CDS COG3567 703991 705457 - [S] Uncharacterized protein conserved in bacteria 336 cds-NP_706600.1 CDS COG2801 706202 707107 - [L] Transposase and inactivated derivatives cds-NP_706601.3 CDS COG2963 707065 707475 - [L] Transposase and inactivated derivatives cds-NP_706602.2 CDS COG1783 707506 708129 - [R] Phage terminase large subunit cds-NP_706603.1 CDS NA 708140 708904 - NA 337 cds-NP_706604.1 CDS COG0586 709099 709611 + [S] Uncharacterized membrane-associated protein 338 cds-NP_706605.1 CDS COG2963 709982 710320 + [L] Transposase and inactivated derivatives cds-NP_706606.1 CDS COG2801 710347 711186 + [L] Transposase and inactivated derivatives cds-NP_706607.1 CDS COG1165 711215 711637 + [H] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 339 rna-SF4455 tRNA NA 711827 711903 + NA rna-SF4456 tRNA NA 711905 711981 + NA rna-SF4457 tRNA NA 711984 712058 + NA rna-SF4458 tRNA NA 712062 712136 + NA 340 cds-NP_706608.1 CDS COG2801 712950 713768 - [L] Transposase and inactivated derivatives cds-NP_706609.1 CDS COG2963 713804 714106 - [L] Transposase and inactivated derivatives 341 cds-NP_706610.1 CDS ROG0276 714382 716241 + NA 342 cds-NP_706611.1 CDS COG2801 716216 717055 - [L] Transposase and inactivated derivatives cds-NP_706612.1 CDS COG2963 717082 717420 - [L] Transposase and inactivated derivatives 343 cds-NP_706613.2 CDS COG1484 717477 718355 + [L] DNA replication protein cds-NP_706614.1 CDS COG0305 718352 719743 + [L] Replicative DNA helicase cds-NP_706615.1 CDS ROG5815 719740 719997 + NA 344 ybcQ CDS NA 720285 720665 + NA 345 rna-SF4459 tRNA NA 720865 720941 + NA rna-SF4460 tRNA NA 720943 721019 + NA rna-SF4461 tRNA NA 721022 721097 + NA rna-SF4462 tRNA NA 721101 721175 + NA 346 cds-NP_706617.1 CDS NA 721468 721683 + NA cds-NP_706618.1 CDS NA 721687 722316 + NA 347 cds-NP_706619.3 CDS COG3772 722382 722915 + [R] Phage-related lysozyme (muraminidase) cds-NP_706620.2 CDS ROG4991 722912 723316 + NA cds-NP_706621.1 CDS COG2963 723378 723680 + [L] Transposase and inactivated derivatives 348 cds-NP_706624.1 CDS COG2963 724600 724926 - [L] Transposase and inactivated derivatives 349 cds-NP_706625.1 CDS COG2801 725011 725829 + [L] Transposase and inactivated derivatives cds-NP_706626.1 CDS COG4220 725857 726180 + [L] Phage DNA packaging protein, Nu1 subunit 350 cds-NP_706631.1 CDS COG0616 729846 731351 + [OU] Periplasmic serine proteases (ClpP class) cds-NP_706632.1 CDS NA 731388 731735 + NA cds-NP_706633.1 CDS ROG3194 731793 732821 + NA cds-NP_706634.2 CDS COG3644 732873 733259 + [S] Uncharacterized protein conserved in bacteria cds-NP_706635.1 CDS NA 733271 733648 + NA cds-NP_706636.2 CDS ROG6459 733635 734219 + NA cds-NP_706637.1 CDS ROG6194 734216 734617 + NA cds-NP_706638.1 CDS COG5492 734622 735368 + [N] Bacterial surface proteins containing Ig-like domains cds-NP_706639.1 CDS NA 735409 735813 + NA cds-NP_706640.1 CDS NA 735822 736151 + NA cds-NP_706641.1 CDS COG5281 736123 739164 + [S] Phage-related minor tail protein cds-NP_706642.1 CDS COG4718 739164 739493 + [S] Phage-related protein cds-NP_706643.1 CDS COG4672 739493 740191 + [S] Phage-related protein cds-NP_706644.1 CDS COG1310 740196 740939 + [R] Predicted metal-dependent protease of the PAD1/JAB1 cds-NP_706645.1 CDS COG4723 740903 741478 + [S] Phage-related protein, tail component cds-NP_706646.1 CDS COG4733 741539 745018 + [S] Phage-related protein, tail component 351 cds-NP_706647.1 CDS COG3637 745086 745685 + [M] Opacity protein and related surface antigens 352 cds-NP_706649.1 CDS NA 747111 747734 + NA 353 ipaH_1 CDS COG4886 747914 749677 - [S] Leucine-rich repeat (LRR) protein 354 ybhB CDS COG1881 750260 750736 - [R] Phospholipid-binding protein bioA CDS COG0161 750795 752195 - [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 355 bioB CDS COG0502 752171 753211 + [H] Biotin synthase and related enzymes bioF CDS COG0156 753208 754362 + [H] 7-keto-8-aminopelargonate synthetase and related enzymes bioC CDS COG0500 754349 755104 + [QR] SAM-dependent methyltransferases bioD CDS COG0132 755097 755774 + [H] Dethiobiotin synthetase 356 uvrB CDS COG0556 756353 758374 + [L] Helicase subunit of the DNA excision 357 ybhK CDS COG0391 758566 759474 - [S] Uncharacterized conserved protein 358 moaA CDS COG2896 759871 760860 + [H] Molybdenum cofactor biosynthesis enzyme moaB CDS COG0521 760882 761394 + [H] Molybdopterin biosynthesis enzymes moaC CDS COG0315 761397 761882 + [H] Molybdenum cofactor biosynthesis enzyme moaD CDS COG1977 761875 762120 + [H] Molybdopterin converting factor, small subunit moaE CDS COG0314 762122 762574 + [H] Molybdopterin converting factor, large subunit 359 ybhL CDS COG0670 762711 763415 + [R] Integral membrane protein, interacts with FtsH ybhM CDS COG0670 763620 764333 + [R] Integral membrane protein, interacts with FtsH 360 ybhN CDS COG0392 764369 765325 - [S] Predicted integral membrane protein ybhO CDS COG1502 765325 766566 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes ybhP CDS COG3568 766563 767324 - [R] Metal-dependent hydrolase 361 ybhQ CDS ROG0816 767457 767867 + NA 362 ybhR CDS COG0842 767829 768935 - [V] ABC-type multidrug transport system, permease component ybhS CDS COG0842 768946 770079 - [V] ABC-type multidrug transport system, permease component ybhF CDS COG1131 770072 771823 - [V] ABC-type multidrug transport system, ATPase component cds-NP_706673.1 CDS COG1566 771801 772799 - [V] Multidrug resistance efflux pump ybiH CDS COG1309 772799 773482 - [K] Transcriptional regulator 363 rhlE CDS COG0513 773699 774919 + [LKJ] Superfamily II DNA and RNA helicases 364 ybiA CDS COG3236 775093 775575 - [S] Uncharacterized protein conserved in bacteria 365 dinG CDS COG1199 775695 777845 + [KL] Rad3-related DNA helicases ybiB CDS COG0547 777873 778835 + [E] Anthranilate phosphoribosyltransferase 366 ybiC CDS COG2055 778976 780061 + [C] Malate/L-lactate dehydrogenases 367 ybiJ CDS NA 780290 780550 - NA 368 ybiI CDS COG1734 780815 781081 - [T] DnaK suppressor protein 369 ybiX CDS COG3128 781155 781868 - [S] Uncharacterized iron-regulated protein 370 cds-NP_706683.1 CDS COG3385 783930 785276 + [L] FOG: Transposase and inactivated derivatives 371 ybiM CDS ROG2411 785859 786263 - NA 372 ybiN CDS COG3129 786314 787321 + [R] Predicted SAM-dependent methyltransferase 373 ybiO CDS COG0668 787318 789381 - [M] Small-conductance mechanosensitive channel 374 glnQ CDS COG1126 789803 790525 - [E] ABC-type polar amino acid transport system, glnP CDS COG0765 790522 791181 - [E] ABC-type amino acid transport system, permease glnH CDS COG0834 791320 792066 - [ET] ABC-type amino acid transport/signal transduction systems, 375 dps CDS COG0783 792470 792973 - [P] DNA-binding ferritin-like protein (oxidative damage protectant) 376 ybiF CDS COG5006 793272 794159 - [R] Predicted permease, DMT superfamily 377 ompX CDS COG3637 794512 795027 + [M] Opacity protein and related surface antigens 378 ybiP CDS COG2194 795075 796658 - [R] Predicted membrane-associated, metal-dependent hydrolase 379 cds-YP_008439233.1 CDS NA 796930 797058 - NA 380 cds-NP_706694.1 CDS COG1321 797244 797711 + [K] Mn-dependent transcriptional regulator ybiR CDS COG1055 797708 798826 + [P] Na+/H+ antiporter NhaD and related arsenite 381 ybiS CDS COG1376 798884 799804 - [S] Uncharacterized protein conserved in bacteria 382 ybiT CDS COG0488 800023 801615 + [R] ATPase components of ABC transporters with 383 ybiU CDS NA 801856 803121 - NA 384 cds-NP_706699.1 CDS COG0561 803273 804088 - [R] Predicted hydrolases of the HAD superfamily 385 ybiW CDS COG1882 804234 806666 - [C] Pyruvate-formate lyase ybiY CDS COG1180 806672 807598 - [O] Pyruvate-formate lyase-activating enzyme 386 mipB CDS COG0176 807630 808364 + [G] Transaldolase 387 moeB CDS COG0476 808543 809292 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and moeA CDS COG0303 809292 810527 - [H] Molybdopterin biosynthesis enzyme 388 ybiK CDS COG1446 810731 811696 + [E] Asparaginase cds-NP_706706.2 CDS COG1123 811716 813554 + [R] ATPase components of various ABC-type transport cds-NP_706707.2 CDS COG0747 813574 815112 + [E] ABC-type dipeptide transport system, periplasmic component cds-NP_706708.1 CDS COG0601 815130 816050 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components cds-NP_706709.1 CDS COG1173 816053 816964 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 389 cds-NP_706710.1 CDS COG2199 819492 820820 + [T] FOG: GGDEF domain 390 rimO CDS COG0621 820867 822192 - [J] 2-methylthioadenine synthetase 391 bssR CDS NA 822405 822788 + NA 392 yliI CDS COG2133 822899 823837 + [G] Glucose/sorbosone dehydrogenases 393 yliJ CDS COG0625 824010 824642 - [O] Glutathione S-transferase 394 cds-NP_706715.1 CDS COG1686 824861 825877 + [M] D-alanyl-D-alanine carboxypeptidase cds-NP_706716.1 CDS COG2963 825906 826208 + [L] Transposase and inactivated derivatives cds-NP_706717.1 CDS COG2801 826244 827062 + [L] Transposase and inactivated derivatives cds-NP_706718.1 CDS COG1686 827089 827352 + [M] D-alanyl-D-alanine carboxypeptidase 395 deoR CDS COG1349 827399 828157 - [KG] Transcriptional regulators of sugar metabolism 396 ybjG CDS COG0671 828215 828811 - [I] Membrane-associated phospholipid phosphatase 397 cmr CDS COG0477 829096 830322 + [GEPR] Permeases of the major facilitator superfamily 398 ybjH CDS NA 830363 830647 - NA 399 cds-NP_706723.2 CDS COG0561 830733 831521 - [R] Predicted hydrolases of the HAD superfamily cds-NP_706724.1 CDS COG2814 831548 832756 - [G] Arabinose efflux permease 400 cds-NP_706725.2 CDS COG3226 832840 833376 + [S] Uncharacterized protein conserved in bacteria 401 cds-NP_706726.1 CDS COG2985 833551 835236 - [R] Predicted permease 402 ybjM CDS NA 835506 835883 + NA 403 grxA CDS COG0695 835913 836170 - [O] Glutaredoxin and related proteins 404 ybjC CDS NA 836330 836617 + NA 405 cds-NP_706730.1 CDS ROG0762 836694 837902 - NA 406 mdaA CDS COG0778 837954 838661 + [C] Nitroreductase rimK CDS COG0189 838722 839624 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme 407 ybjN CDS ROG6463 839712 840188 + NA 408 potF CDS COG0687 840540 841652 + [E] Spermidine/putrescine-binding periplasmic protein potG CDS COG3842 841666 842880 + [E] ABC-type spermidine/putrescine transport systems, ATPase components potH CDS COG1176 842890 843843 + [E] ABC-type spermidine/putrescine transport system, permease component potI CDS COG1177 843840 844685 + [E] ABC-type spermidine/putrescine transport system, permease component ybjO CDS NA 844745 845233 + NA rumB CDS COG2265 845274 846401 + [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 409 artJ CDS COG0834 846576 847307 - [ET] ABC-type amino acid transport/signal transduction systems, 410 artM CDS COG4160 847599 848267 - [E] ABC-type arginine/histidine transport system, permease component artQ CDS COG4215 848267 848983 - [E] ABC-type arginine transport system, permease component artI CDS COG0834 848990 849721 - [ET] ABC-type amino acid transport/signal transduction systems, artP CDS COG4161 849739 850467 - [E] ABC-type arginine transport system, ATPase component 411 ybjP CDS COG3042 850685 851200 - [R] Putative hemolysin 412 cds-NP_706746.2 CDS NA 851849 853618 + NA 413 cds-NP_706747.1 CDS COG0393 853829 854152 + [S] Uncharacterized conserved protein cds-NP_706748.1 CDS COG3023 854149 854979 + [V] Negative regulator of beta-lactamase expression 414 cds-NP_706749.2 CDS COG0451 854976 856025 - [MG] Nucleoside-diphosphate-sugar epimerases ybjT CDS COG0702 856088 857518 - [MG] Predicted nucleoside-diphosphate-sugar epimerases ybjU CDS COG2008 857529 858530 - [E] Threonine aldolase poxB CDS COG0028 858567 860285 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 415 cds-NP_706753.2 CDS COG1018 860418 861386 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 ybjW CDS COG1151 861398 863056 - [C] 6Fe-6S prismane cluster-containing protein 416 ybjE CDS COG2431 863194 864141 - [S] Predicted membrane protein 417 cds-NP_706756.1 CDS COG2801 864219 865124 - [L] Transposase and inactivated derivatives cds-NP_706757.1 CDS COG2963 865082 865492 - [L] Transposase and inactivated derivatives 418 aqpZ CDS COG0580 865890 866585 - [G] Glycerol uptake facilitator and related permeases insB_14 CDS COG1662 866637 867140 - [L] Transposase and inactivated derivatives, IS1 family insA_11 CDS COG3677 867059 867334 - [L] Transposase and inactivated derivatives 419 ybjD CDS COG3593 867786 869444 + [L] Predicted ATP-dependent endonuclease of the OLD 420 ybjX CDS COG2990 869441 870433 - [S] Uncharacterized protein conserved in bacteria 421 cds-NP_706763.1 CDS NA 870502 870636 + NA cds-NP_706764.2 CDS COG0845 870548 871663 + [M] Membrane-fusion protein ybjZ CDS COG0577 871660 873606 + [V] ABC-type antimicrobial peptide transport system, permease 422 cspD CDS COG1278 873679 873903 - [K] Cold shock proteins 423 clpS CDS COG2127 874226 874546 + [S] Uncharacterized conserved protein clpA CDS COG0542 874577 876853 + [O] ATPases with chaperone activity, ATP-binding subunit 424 rna-SF4463 tRNA NA 877256 877343 - NA 425 infA CDS COG0361 877597 877815 - [J] Translation initiation factor 1 (IF-1) aat CDS COG2360 878100 878804 - [O] Leu/Phe-tRNA-protein transferase cydC CDS COG4987 878846 880567 - [CO] ABC-type transport system involved in cytochrome cydD CDS COG4988 880568 882334 - [CO] ABC-type transport system involved in cytochrome 426 trxB CDS COG0492 882457 883422 - [O] Thioredoxin reductase 427 lrp CDS COG1522 883966 884460 + [K] Transcriptional regulators 428 ftsK CDS COG1674 884595 888623 + [D] DNA segregation ATPase FtsK/SpoIIIE and related lolA CDS COG2834 888775 889389 + [M] Outer membrane lipoprotein-sorting protein ycaJ CDS COG2256 889400 890743 + [L] ATPase related to the helicase subunit serS CDS COG0172 890834 892126 + [J] Seryl-tRNA synthetase 429 dmsB CDS COG0437 894820 895437 + [C] Fe-S-cluster-containing hydrogenase components 1 dmsC CDS COG3302 895439 896230 + [R] DMSO reductase anchor subunit 430 ycaC CDS COG1335 896266 896892 - [Q] Amidases related to nicotinamidase 431 ycaD CDS ROG2472 897207 898355 + NA 432 cds-NP_706784.1 CDS COG2963 898668 899342 + [L] Transposase and inactivated derivatives cds-NP_706785.1 CDS COG3436 899339 899686 + [L] Transposase and inactivated derivatives cds-NP_706786.1 CDS COG3436 899706 901307 + [L] Transposase and inactivated derivatives 433 cds-NP_706788.1 CDS COG2801 901847 902686 - [L] Transposase and inactivated derivatives cds-NP_706789.1 CDS COG2963 902713 903051 - [L] Transposase and inactivated derivatives 434 cds-NP_706790.1 CDS NA 903199 903489 - NA 435 cds-NP_706791.1 CDS COG2963 903787 904089 + [L] Transposase and inactivated derivatives cds-NP_706792.1 CDS COG2801 904125 904943 + [L] Transposase and inactivated derivatives 436 cds-NP_706793.2 CDS NA 904983 905354 - NA cds-NP_706794.1 CDS NA 905393 905680 - NA 437 cds-YP_008439234.1 CDS NA 905930 906142 - NA 438 cds-NP_706795.1 CDS COG1636 906313 906879 - [S] Uncharacterized protein conserved in bacteria 439 cds-YP_008439235.1 CDS NA 907147 907560 - NA cds-NP_706797.1 CDS COG1349 907561 907983 - [KG] Transcriptional regulators of sugar metabolism 440 cds-NP_706798.1 CDS NA 908890 909522 - NA 441 cds-NP_706799.1 CDS NA 909600 910022 - NA cds-NP_706800.1 CDS NA 910006 910233 - NA 442 cds-NP_706801.1 CDS COG2932 910310 910717 + [K] Predicted transcriptional regulator 443 cds-NP_706802.2 CDS NA 910920 911075 + NA 444 cds-NP_706803.1 CDS COG2801 911522 912427 - [L] Transposase and inactivated derivatives cds-NP_706804.3 CDS COG2963 912385 912795 - [L] Transposase and inactivated derivatives 445 cds-NP_706805.1 CDS COG3646 913190 914146 + [S] Uncharacterized phage-encoded protein 446 cds-NP_706806.1 CDS COG2963 914660 914962 + [L] Transposase and inactivated derivatives cds-NP_706807.1 CDS COG2801 914998 915816 + [L] Transposase and inactivated derivatives 447 cds-NP_706808.1 CDS ROG6166 915841 916485 - NA 448 cds-NP_706809.1 CDS COG2801 916829 917647 - [L] Transposase and inactivated derivatives cds-NP_706810.1 CDS COG2963 917683 917985 - [L] Transposase and inactivated derivatives 449 cds-NP_706811.2 CDS NA 918051 918668 + NA 450 ybhE CDS COG2706 921555 922550 + [G] 3-carboxymuconate cyclase 451 ybhH CDS COG2828 923833 924780 + [S] Uncharacterized protein conserved in bacteria 452 ybhI CDS COG0471 924919 926289 + [P] Di- and tricarboxylate transporters 453 ybhJ CDS COG1048 926472 928652 + [C] Aconitase A 454 ybhC CDS COG4677 928793 930076 - [G] Pectin methylesterase 455 cds-NP_706818.1 CDS COG2801 931193 932011 - [L] Transposase and inactivated derivatives cds-NP_706819.1 CDS COG2963 932047 932349 - [L] Transposase and inactivated derivatives 456 pflA CDS COG1180 932758 933498 - [O] Pyruvate-formate lyase-activating enzyme pflB CDS COG1882 933690 935972 - [C] Pyruvate-formate lyase focA CDS COG2116 936027 936884 - [P] Formate/nitrite family of transporters 457 ycaO CDS COG1944 937290 939050 - [S] Uncharacterized conserved protein 458 serC CDS COG1932 940005 941093 + [HE] Phosphoserine aminotransferase aroA CDS COG0128 941164 942447 + [E] 5-enolpyruvylshikimate-3-phosphate synthase 459 cds-NP_706827.1 CDS COG3385 942573 943919 + [L] FOG: Transposase and inactivated derivatives 460 ycaL CDS COG4784 944055 944819 + [R] Putative Zn-dependent protease 461 cmk CDS COG0283 944992 945675 + [F] Cytidylate kinase rpsA CDS COG0539 945786 947459 + [J] Ribosomal protein S1 ihfB CDS COG0776 947619 947903 + [L] Bacterial nucleoid DNA-binding protein 462 msbA CDS COG1132 950406 952154 + [V] ABC-type multidrug transport system, ATPase and lpxK CDS COG1663 952151 953137 + [M] Tetraacyldisaccharide-1-P 4'-kinase ycaQ CDS COG3214 953174 954406 + [S] Uncharacterized protein conserved in bacteria 463 ycaR CDS COG2835 954458 954640 + [S] Uncharacterized conserved protein kdsB CDS COG1212 954637 955383 + [M] CMP-2-keto-3-deoxyoctulosonic acid synthetase 464 cds-NP_706837.1 CDS NA 955537 956430 + NA 465 ycbC CDS COG1434 956407 957186 - [S] Uncharacterized conserved protein 466 smtA CDS COG0500 957322 958107 + [QR] SAM-dependent methyltransferases mukF CDS COG3006 958104 959426 + [D] Uncharacterized protein involved in chromosome partitioning mukE CDS COG3095 959434 960111 + [D] Uncharacterized protein involved in chromosome partitioning mukB CDS COG3096 960111 964571 + [D] Uncharacterized protein involved in chromosome partitioning 467 cds-NP_706843.1 CDS COG3385 964716 966062 + [L] FOG: Transposase and inactivated derivatives 468 ycbB CDS COG2989 966270 968117 + [S] Uncharacterized protein conserved in bacteria ycbK CDS COG3108 968298 968846 + [S] Uncharacterized protein conserved in bacteria ycbL CDS COG0491 968873 969520 + [R] Zn-dependent hydrolases, including glyoxylases 469 aspC CDS COG1448 969743 970933 - [E] Aspartate/tyrosine/aromatic aminotransferase 470 cds-YP_008439236.1 CDS NA 970932 971102 + NA 471 ompF CDS COG3203 971118 972206 - [M] Outer membrane protein (porin) 472 asnC CDS COG0017 972807 974207 - [J] Aspartyl/asparaginyl-tRNA synthetases 473 pncB CDS COG1488 974376 975578 - [H] Nicotinic acid phosphoribosyltransferase 474 pepN CDS COG0308 975844 978459 + [E] Aminopeptidase N 475 ssuB CDS COG1116 978666 979433 - [P] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component cds-NP_706853.1 CDS COG0600 979430 980083 - [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component cds-NP_706854.1 CDS COG2801 980058 980963 - [L] Transposase and inactivated derivatives cds-NP_706855.3 CDS COG2963 980921 981331 - [L] Transposase and inactivated derivatives 476 ycbN CDS COG2141 981569 982714 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and ycbO CDS COG0715 982711 983712 - [P] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components ycbP CDS COG0431 983663 984238 - [R] Predicted flavoprotein cds-NP_706859.1 CDS NA 984157 984570 - NA 477 insA_12 CDS COG3677 984651 984926 + [L] Transposase and inactivated derivatives 478 insB_15 CDS COG1662 985446 985841 - [L] Transposase and inactivated derivatives, IS1 family insA_13 CDS COG3677 985868 986143 - [L] Transposase and inactivated derivatives 479 ycbS CDS COG3188 986284 988884 + [NU] P pilus assembly protein, porin PapC cds-NP_706864.1 CDS COG3539 988875 989858 + [NU] P pilus assembly protein, pilin FimA cds-NP_706865.1 CDS COG3539 989956 990498 + [NU] P pilus assembly protein, pilin FimA cds-NP_706866.1 CDS COG3539 990458 991021 + [NU] P pilus assembly protein, pilin FimA ycbF CDS COG3121 990987 991724 + [NU] P pilus assembly protein, chaperone PapD 480 pyrD CDS COG0167 991835 992845 + [F] Dihydroorotate dehydrogenase 481 ycbW CDS ROG3478 992983 993561 + NA 482 cds-NP_706870.1 CDS COG3217 993558 994667 - [R] Uncharacterized Fe-S protein 483 rlmL CDS COG0116 994911 997019 + [L] Predicted N6-adenine-specific DNA methylase uup CDS COG0488 997031 998938 + [R] ATPase components of ABC transporters with 484 pqiA CDS COG2995 999068 1000321 + [S] Uncharacterized paraquat-inducible protein A pqiB CDS COG3008 1000326 1001966 + [R] Paraquat-inducible protein B ymbA CDS COG3009 1001963 1002526 + [S] Uncharacterized protein conserved in bacteria 485 cds-YP_008439237.1 CDS COG3130 1002782 1002949 + [J] Ribosome modulation factor 486 fabA CDS COG0764 1003019 1003537 - [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases cds-NP_706877.1 CDS COG1067 1003607 1005367 - [O] Predicted ATP-dependent protease 487 ycbG CDS COG3120 1005552 1005956 + [S] Uncharacterized protein conserved in bacteria 488 ompA CDS COG2885 1006082 1007128 - [M] Outer membrane protein and related peptidoglycan-associated 489 sulA CDS COG5404 1007485 1007994 - [D] SOS-response cell division inhibitor, blocks FtsZ 490 cds-NP_706881.3 CDS COG2963 1008669 1009079 + [L] Transposase and inactivated derivatives 491 cds-NP_706883.1 CDS COG1289 1009650 1011815 - [S] Predicted membrane protein yccF CDS COG3304 1011825 1012271 - [S] Predicted membrane protein 492 helD CDS COG1074 1012394 1014448 + [L] ATP-dependent exoDNAse (exonuclease V) beta subunit 493 mgsA CDS COG1803 1014480 1014947 - [G] Methylglyoxal synthase cds-NP_706887.1 CDS COG3110 1015034 1015696 - [S] Uncharacterized protein conserved in bacteria 494 cds-NP_706888.1 CDS COG1832 1015815 1016282 + [R] Predicted CoA-binding protein 495 yccV CDS COG3785 1016327 1016695 - [S] Uncharacterized conserved protein cds-NP_706890.1 CDS COG1092 1016702 1017892 - [R] Predicted SAM-dependent methyltransferases 496 cds-NP_706891.2 CDS COG1254 1017987 1018265 + [C] Acylphosphatases 497 yccK CDS COG2920 1018262 1018648 - [P] Dissimilatory sulfite reductase (desulfoviridin), gamma subunit yccA CDS COG0670 1018682 1019341 - [R] Integral membrane protein, interacts with FtsH 498 rna-SF4464 tRNA NA 1019548 1019635 - NA 499 hyaA CDS COG1740 1020061 1021179 + [C] Ni,Fe-hydrogenase I small subunit hyaB CDS COG0374 1021176 1022969 + [C] Ni,Fe-hydrogenase I large subunit hyaC CDS COG1969 1022988 1023695 + [C] Ni,Fe-hydrogenase I cytochrome b subunit hyaD CDS COG0680 1023692 1024279 + [C] Ni,Fe-hydrogenase maturation factor hyaE CDS ROG1104 1024276 1024674 + NA hyaF CDS ROG0413 1024671 1025660 + NA 500 appC CDS COG1271 1026167 1027711 + [C] Cytochrome bd-type quinol oxidase, subunit 1 appB CDS COG1294 1027723 1028859 + [C] Cytochrome bd-type quinol oxidase, subunit 2 501 appA CDS ROG1885 1029043 1030341 + NA 502 cds-NP_706904.1 CDS COG3206 1030456 1032402 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis yccY CDS COG0394 1032642 1033100 - [T] Protein-tyrosine-phosphatase yccZ CDS COG1596 1033076 1034215 - [M] Periplasmic protein involved in polysaccharide export ymcA CDS ROG0647 1034261 1036357 - NA ymcB CDS ROG0647 1036357 1037103 - NA ymcC CDS ROG4342 1037100 1037744 - NA 503 ymcD CDS NA 1037851 1038174 - NA 504 cspH CDS COG1278 1038598 1038810 - [K] Cold shock proteins 505 cspG CDS COG1278 1039108 1039308 + [K] Cold shock proteins 506 ymcE CDS NA 1039482 1039712 + NA yccL CDS NA 1039702 1039875 + NA 507 yccM CDS COG0348 1039924 1040997 - [C] Polyferredoxin 508 cds-NP_706916.1 CDS COG0642 1041099 1043528 - [T] Signal transduction histidine kinase 509 torT CDS COG1879 1043893 1044921 + [G] ABC-type sugar transport system, periplasmic component 510 torR CDS COG0745 1044894 1045586 - [TK] Response regulators consisting of a CheY-like 511 torC CDS COG3005 1045673 1046845 + [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c 512 insB_16 CDS COG1662 1049588 1049983 - [L] Transposase and inactivated derivatives, IS1 family insA_14 CDS COG3677 1050010 1050285 - [L] Transposase and inactivated derivatives 513 yccD CDS ROG0188 1050851 1051156 - NA cbpA CDS COG2214 1051156 1052076 - [O] DnaJ-class molecular chaperone 514 yccE CDS NA 1052337 1053593 + NA 515 agp CDS ROG1885 1053886 1055127 + NA 516 yccJ CDS NA 1055165 1055392 - NA wrbA CDS COG0655 1055413 1056009 - [R] Multimeric flavodoxin WrbA 517 ycdG CDS COG2233 1056571 1057965 - [F] Xanthine/uracil permeases cds-NP_706929.2 CDS COG1853 1057920 1058378 - [R] Conserved protein/domain typically associated with flavoprotein cds-NP_706930.1 CDS COG0778 1058425 1059015 - [C] Nitroreductase cds-NP_706931.2 CDS COG0596 1059025 1059825 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase cds-NP_706932.1 CDS COG0251 1059833 1060219 - [J] Putative translation initiation inhibitor, yjgF family cds-NP_706933.1 CDS COG1335 1060231 1060965 - [Q] Amidases related to nicotinamidase cds-NP_706934.2 CDS COG2141 1060923 1062071 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 518 ycdC CDS COG1309 1062302 1062940 + [K] Transcriptional regulator 519 cds-NP_706936.1 CDS ROG0048 1063235 1064422 - NA cds-NP_706937.1 CDS NA 1064422 1064844 - NA 520 cds-NP_706938.1 CDS COG0672 1064943 1065551 + [P] High-affinity Fe2+/Pb2+ permease ycdO CDS COG2822 1065609 1066736 + [P] Predicted periplasmic lipoprotein involved in iron ycdB CDS COG2837 1066742 1068007 + [P] Predicted iron-dependent peroxidase 521 cds-NP_706941.1 CDS COG1702 1068479 1069402 + [T] Phosphate starvation-inducible protein PhoH, predicted ATPase 522 cds-NP_706942.1 CDS COG2801 1069512 1070378 - [L] Transposase and inactivated derivatives cds-NP_706943.1 CDS COG2963 1070375 1070683 - [L] Transposase and inactivated derivatives 523 ycdU CDS NA 1071266 1072252 + NA 524 rna-SF4465 tRNA NA 1072445 1072532 - NA 525 ycdX CDS COG1387 1073760 1074497 + [ER] Histidinol phosphatase and related hydrolases of ycdY CDS COG3381 1074521 1075075 + [R] Uncharacterized component of anaerobic dehydrogenases 526 ycdZ CDS ROG2796 1075147 1075668 + NA 527 cds-NP_706948.1 CDS ROG0762 1076772 1077980 - NA 528 csgE CDS NA 1078313 1078702 - NA csgD CDS COG2197 1078707 1079357 - [TK] Response regulator containing a CheY-like receiver 529 csgB CDS ROG1255 1080111 1080566 + NA 530 cds-NP_706952.1 CDS COG2963 1080780 1081082 + [L] Transposase and inactivated derivatives 531 csgC CDS NA 1082266 1082598 + NA 532 cds-NP_706955.1 CDS COG3539 1082719 1083030 + [NU] P pilus assembly protein, pilin FimA 533 cds-NP_706956.1 CDS COG2110 1083125 1083658 + [R] Predicted phosphatase homologous to the C-terminal ymdC CDS COG1502 1083600 1085081 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 534 mdoC CDS ROG0348 1085089 1086246 - NA 535 mdoG CDS COG3131 1086640 1088175 + [P] Periplasmic glucans biosynthesis protein mdoH CDS COG2943 1088168 1090711 + [M] Membrane glycosyltransferase 536 cds-NP_706961.1 CDS ROG0048 1091127 1092314 - NA cds-NP_706962.1 CDS NA 1092314 1092736 - NA 537 cds-NP_706965.1 CDS COG2963 1095294 1095620 - [L] Transposase and inactivated derivatives 538 cds-NP_706966.1 CDS COG2963 1096016 1096354 + [L] Transposase and inactivated derivatives cds-NP_706967.1 CDS COG2801 1096381 1097220 + [L] Transposase and inactivated derivatives 539 cds-NP_706968.1 CDS NA 1097226 1097729 - NA 540 cds-NP_706969.3 CDS COG2963 1097748 1098158 + [L] Transposase and inactivated derivatives cds-NP_706970.1 CDS COG2801 1098116 1099021 + [L] Transposase and inactivated derivatives cds-NP_706971.1 CDS COG2963 1099417 1099743 + [L] Transposase and inactivated derivatives 541 cds-NP_706973.1 CDS COG2963 1100914 1101216 + [L] Transposase and inactivated derivatives cds-NP_706974.1 CDS COG2801 1101252 1102070 + [L] Transposase and inactivated derivatives 542 cds-NP_706975.2 CDS COG1961 1102095 1103027 - [L] Site-specific recombinases, DNA invertase Pin homologs 543 htrB CDS COG1560 1103420 1104340 - [M] Lauroyl/myristoyl acyltransferase 544 yceA CDS COG1054 1104565 1105617 + [R] Predicted sulfurtransferase 545 yceI CDS COG2353 1105659 1106234 - [S] Uncharacterized conserved protein cds-NP_706979.2 CDS COG3038 1106238 1106804 - [C] Cytochrome B561 546 yceO CDS NA 1107065 1107178 - NA solA CDS COG0665 1107226 1108344 - [E] Glycine/D-amino acid oxidases (deaminating) 547 dinI CDS NA 1109003 1109248 - NA 548 pyrC CDS COG0418 1109322 1110368 - [F] Dihydroorotase 549 yceB CDS ROG2451 1110474 1111034 - NA 550 grxB CDS COG2999 1111168 1111815 - [O] Glutaredoxin 2 551 yceL CDS NA 1111879 1113087 - NA 552 rimJ CDS COG1670 1113323 1113907 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins yceH CDS COG3132 1113918 1114565 + [S] Uncharacterized protein conserved in bacteria 553 mviN CDS COG0728 1115600 1117135 + [R] Uncharacterized membrane protein, putative virulence factor 554 flgN CDS COG3418 1117175 1117591 - [NUO] Flagellar biosynthesis/type III secretory pathway chaperone flgM CDS COG2747 1117596 1117889 - [KNU] Negative regulator of flagellin synthesis (anti-sigma28 flgA CDS COG1261 1117965 1118624 - [NO] Flagellar basal body P-ring biosynthesis protein 555 flgB CDS COG1815 1118779 1119195 + [N] Flagellar basal body protein flgE CDS COG1749 1119614 1121542 + [N] Flagellar hook protein FlgE 556 flgG CDS COG4786 1122451 1123233 + [N] Flagellar basal body rod protein flgH CDS COG2063 1123286 1123984 + [N] Flagellar basal body L-ring protein flgI CDS COG1706 1123996 1125093 + [N] Flagellar basal-body P-ring protein flgJ CDS COG3951 1125093 1126034 + [MNO] Rod binding protein 557 rne CDS COG1530 1128893 1132075 - [J] Ribonucleases G and E 558 cds-NP_707001.1 CDS NA 1132165 1132539 + NA 559 yceC CDS COG0564 1132657 1133616 + [J] Pseudouridylate synthases, 23S RNA-specific 560 yceF CDS COG0424 1133728 1134351 - [D] Nucleotide-binding protein implicated in inhibition of 561 yceD CDS COG1399 1134511 1135032 + [R] Predicted metal-binding, possibly nucleic acid-binding protein rpmF CDS COG0333 1135084 1135257 + [J] Ribosomal protein L32 plsX CDS COG0416 1135368 1136408 + [I] Fatty acid/phospholipid biosynthesis enzyme fabH CDS COG0332 1136476 1137429 + [I] 3-oxoacyl-[acyl-carrier-protein] synthase III fabD CDS COG0331 1137445 1138374 + [I] (acyl-carrier-protein) S-malonyltransferase fabG CDS COG1028 1138387 1139121 + [IQR] Dehydrogenases with different specificities (related to acpP CDS COG0236 1139332 1139568 + [IQ] Acyl carrier protein fabF CDS COG0304 1139654 1140895 + [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase pabC CDS COG0115 1141015 1141824 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase yceG CDS COG1559 1141827 1142849 + [R] Predicted periplasmic solute-binding protein tmk CDS COG0125 1142839 1143480 + [F] Thymidylate kinase holB CDS COG2812 1143477 1144481 + [L] DNA polymerase III, gamma/tau subunits ycfH CDS COG0084 1144492 1145289 + [L] Mg-dependent DNase 562 ptsG CDS COG1263 1145585 1147018 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 563 ycfF CDS COG0537 1149602 1149961 + [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other ycfL CDS COG5633 1149964 1150341 + [R] Predicted periplasmic lipoprotein 564 thiK CDS COG0510 1150977 1151801 + [M] Predicted choline kinase involved in LPS ycfO CDS COG1472 1151812 1152837 + [G] Beta-glucosidase-related glycosidases ycfP CDS COG3150 1152860 1153402 + [R] Predicted esterase 565 ndh CDS COG1252 1153810 1155114 + [C] NADH dehydrogenase, FAD-containing subunit 566 ycfJ CDS COG3134 1155341 1155880 + [S] Predicted outer membrane lipoprotein 567 ycfQ CDS COG1309 1155942 1156652 - [K] Transcriptional regulator 568 ycfR CDS NA 1156859 1157071 + NA 569 ycfS CDS COG1376 1157154 1158116 - [S] Uncharacterized protein conserved in bacteria 570 mfd CDS COG1197 1158259 1161705 - [LK] Transcription-repair coupling factor (superfamily II helicase) 571 ycfT CDS COG4763 1161833 1162906 - [S] Predicted membrane protein 572 ycfU CDS COG4591 1163168 1164367 + [M] ABC-type transport system, involved in lipoprotein lolD CDS COG1136 1164360 1165061 + [V] ABC-type antimicrobial peptide transport system, ATPase ycfW CDS COG4591 1165061 1166305 + [M] ABC-type transport system, involved in lipoprotein ycfX CDS COG1940 1166334 1167245 + [KG] Transcriptional regulator/sugar kinase cobB CDS COG0846 1167261 1168082 + [K] NAD-dependent protein deacetylases, SIR2 family 573 potD CDS COG0687 1168238 1169284 - [E] Spermidine/putrescine-binding periplasmic protein potC CDS COG1177 1169281 1170075 - [E] ABC-type spermidine/putrescine transport system, permease component potB CDS COG1176 1170072 1170899 - [E] ABC-type spermidine/putrescine transport system, permease component potA CDS COG3842 1170913 1172049 - [E] ABC-type spermidine/putrescine transport systems, ATPase components 574 pepT CDS COG2195 1172299 1173525 + [E] Di- and tripeptidases 575 ycfD CDS COG2850 1173574 1174704 - [S] Uncharacterized conserved protein 576 cds-YP_008439238.1 CDS NA 1178175 1178408 + NA cds-NP_707045.1 CDS NA 1178414 1178713 + NA cds-NP_707046.2 CDS COG3378 1178710 1180458 + [R] Predicted ATPase 577 cds-NP_707047.3 CDS NA 1180747 1181025 + NA 578 cds-NP_707048.3 CDS NA 1181562 1181864 + NA 579 cds-NP_707049.2 CDS COG3740 1183362 1183934 + [R] Phage head maturation protease cds-NP_707050.1 CDS COG4695 1183936 1185147 + [S] Phage-related protein cds-NP_707051.1 CDS COG5614 1185144 1185482 + [R] Bacteriophage head-tail adaptor cds-NP_707052.1 CDS ROG0226 1185479 1185775 + NA cds-NP_707053.3 CDS COG1403 1185775 1186215 + [V] Restriction endonuclease cds-NP_707054.1 CDS NA 1186199 1186381 + NA 580 cds-NP_707055.1 CDS COG3747 1186452 1186763 + [L] Phage terminase, small subunit cds-NP_707056.2 CDS COG4626 1186930 1188408 + [R] Phage terminase-like protein, large subunit cds-NP_707057.1 CDS ROG3087 1188422 1188703 + NA 581 phoQ CDS COG2205 1189500 1190960 - [T] Osmosensitive K+ channel histidine kinase phoP CDS COG0745 1190960 1191631 - [TK] Response regulators consisting of a CheY-like 582 purB CDS COG0015 1191800 1193170 - [F] Adenylosuccinate lyase ycfC CDS COG2915 1193174 1193815 - [R] Uncharacterized protein involved in purine metabolism ycfB CDS COG0482 1193851 1195002 - [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop cds-NP_707063.1 CDS COG1051 1195011 1195472 - [F] ADP-ribose pyrophosphatase ymfC CDS COG1187 1195482 1196105 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 583 icdA CDS COG0538 1196307 1197557 + [C] Isocitrate dehydrogenases 584 cds-NP_707066.2 CDS COG2200 1198442 1199965 + [T] FOG: EAL domain 585 cds-YP_008439239.1 CDS ROG7340 1200061 1200297 + NA 586 cds-YP_008439240.1 CDS NA 1200716 1200925 + NA 587 cds-NP_707067.1 CDS COG3468 1201042 1203363 + [MU] Type V secretory pathway, adhesin AidA 588 cds-NP_707068.1 CDS NA 1203420 1203755 - NA cds-NP_707069.2 CDS ROG6708 1203759 1204043 - NA 589 cds-YP_008439241.1 CDS COG3468 1204613 1205023 + [MU] Type V secretory pathway, adhesin AidA 590 minE CDS COG0851 1205395 1205661 - [D] Septum formation topological specificity factor minD CDS COG2894 1205665 1206477 - [D] Septum formation inhibitor-activating ATPase minC CDS COG0850 1206501 1207196 - [D] Septum formation inhibitor 591 cds-NP_707073.1 CDS COG2801 1207920 1208825 - [L] Transposase and inactivated derivatives cds-NP_707074.3 CDS COG2963 1208783 1209193 - [L] Transposase and inactivated derivatives 592 cds-NP_707075.1 CDS COG2963 1209866 1210174 + [L] Transposase and inactivated derivatives cds-NP_707076.1 CDS COG2801 1210171 1211025 + [L] Transposase and inactivated derivatives 593 ycgL CDS COG3100 1211383 1211709 + [S] Uncharacterized protein conserved in bacteria 594 cds-NP_707078.1 CDS COG0179 1211781 1212440 + [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ycgN CDS COG2983 1212517 1212978 + [S] Uncharacterized conserved protein 595 umuD CDS COG1974 1214458 1214877 + [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) umuC CDS COG0389 1214877 1216145 + [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair 596 dsbB CDS COG1495 1216191 1216721 - [O] Disulfide bond formation protein DsbB nhaB CDS COG3067 1216867 1218408 - [P] Na+/H+ antiporter 597 fadR CDS COG2186 1218629 1219348 + [K] Transcriptional regulators 598 ycgB CDS COG2719 1219400 1220932 - [S] Uncharacterized conserved protein 599 dadA CDS COG0665 1221262 1222560 + [E] Glycine/D-amino acid oxidases (deaminating) dadX CDS COG0787 1222570 1223640 + [M] Alanine racemase 600 cds-NP_707089.4 CDS COG3263 1225833 1227443 - [P] NhaP-type Na+/H+ and K+/H+ antiporters with 601 ldcA CDS COG1619 1227664 1228560 - [V] Uncharacterized proteins, homologs of microcin C7 602 mltE CDS COG0741 1228631 1229290 + [M] Soluble lytic murein transglycosylase and related 603 ycgR CDS COG5581 1229292 1230026 - [M] Predicted glycosyltransferase 604 cds-NP_707093.1 CDS COG2261 1230194 1230481 + [S] Predicted membrane protein 605 mltE_2 CDS COG0741 1230618 1231133 + [M] Soluble lytic murein transglycosylase and related 606 cds-NP_707095.1 CDS COG5581 1231135 1231869 - [M] Predicted glycosyltransferase 607 ymgE CDS COG2261 1232070 1232324 + [S] Predicted membrane protein 608 modD CDS COG0157 1234354 1235208 - [H] Nicotinate-nucleotide pyrophosphorylase cds-NP_707098.1 CDS COG0500 1235208 1236017 - [QR] SAM-dependent methyltransferases cds-NP_707099.1 CDS COG1121 1236027 1236785 - [P] ABC-type Mn/Zn transport systems, ATPase component cds-NP_707100.1 CDS COG0609 1236782 1237762 - [P] ABC-type Fe3+-siderophore transport system, permease component cds-NP_707101.2 CDS COG0614 1237762 1238784 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 609 cds-NP_707102.1 CDS NA 1239104 1239562 + NA 610 insA_15 CDS COG3677 1239920 1240195 - [L] Transposase and inactivated derivatives 611 cds-NP_707105.1 CDS ROG0762 1240621 1241829 + NA 612 treA CDS COG1626 1242485 1244182 - [G] Neutral trehalase 613 ycgC CDS COG3412 1244502 1245920 - [S] Uncharacterized protein conserved in bacteria cds-NP_707108.2 CDS COG2376 1245931 1246563 - [G] Dihydroxyacetone kinase cds-NP_707109.2 CDS COG2376 1246574 1247674 - [G] Dihydroxyacetone kinase 614 cds-NP_707110.1 CDS COG3284 1247863 1249791 + [QK] Transcriptional activator of acetoin/glycerol metabolism 615 cds-NP_707111.1 CDS COG3468 1249891 1252758 - [MU] Type V secretory pathway, adhesin AidA 616 cds-YP_008439242.1 CDS ROG8023 1253103 1253306 + NA 617 ychF CDS COG0012 1253602 1254693 - [J] Predicted GTPase, probable translation factor pth CDS COG0193 1254810 1255394 - [J] Peptidyl-tRNA hydrolase 618 ychH CDS NA 1255672 1255950 + NA 619 ychM CDS COG0659 1256005 1257657 - [P] Sulfate permease and related transporters (MFS 620 prsA CDS COG0462 1257809 1258756 - [FE] Phosphoribosylpyrophosphate synthetase ipk CDS COG1947 1258907 1259758 - [I] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase lolB CDS COG3017 1259758 1260381 - [M] Outer membrane lipoprotein involved in outer 621 hemA CDS COG0373 1260595 1261851 + [H] Glutamyl-tRNA reductase prfA CDS COG0216 1261893 1262975 + [J] Protein chain release factor A hemK CDS COG2890 1262975 1263808 + [J] Methylase of polypeptide chain release factors cds-NP_707122.1 CDS COG3094 1263805 1264197 + [S] Uncharacterized protein conserved in bacteria ychA CDS COG2912 1264201 1265010 + [S] Uncharacterized conserved protein kdsA CDS COG2877 1265046 1265900 + [M] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 622 cds-YP_008439243.1 CDS COG3803 1266049 1266216 - [S] Uncharacterized protein conserved in bacteria 623 chaA CDS COG0387 1266562 1267662 - [P] Ca2+/H+ antiporter 624 chaB CDS COG4572 1267931 1268161 + [R] Putative cation transport regulator 625 chaC CDS COG3703 1268298 1269014 + [P] Uncharacterized protein involved in cation transport 626 ychN CDS COG1553 1269058 1269411 - [P] Uncharacterized conserved protein involved in intracellular 627 ychP CDS ROG3089 1269737 1270990 + NA 628 narL CDS COG2197 1270991 1271641 - [TK] Response regulator containing a CheY-like receiver narX CDS COG3850 1271634 1273430 - [T] Signal transduction histidine kinase, nitrate/nitrite-specific 629 narK CDS COG2223 1273769 1275160 + [P] Nitrate/nitrite transporter narG CDS COG5013 1275553 1279296 + [C] Nitrate reductase alpha subunit narH CDS COG1140 1279293 1280831 + [C] Nitrate reductase beta subunit narJ CDS COG2180 1280828 1281538 + [C] Nitrate reductase delta subunit narI CDS COG2181 1281538 1282215 + [C] Nitrate reductase gamma subunit 630 rna-SF4466 tRNA NA 1282577 1282661 - NA 631 purU CDS COG0788 1282821 1283663 - [F] Formyltetrahydrofolate hydrolase ychJ CDS COG3012 1283713 1284171 - [S] Uncharacterized protein conserved in bacteria 632 ychK CDS COG1752 1284284 1285189 + [R] Predicted esterase of the alpha-beta hydrolase 633 hnr CDS COG2204 1285281 1286294 + [T] Response regulator containing CheY-like receiver, AAA-type 634 galU CDS COG1210 1286496 1287404 + [M] UDP-glucose pyrophosphorylase 635 hns CDS COG2916 1287548 1287961 - [R] DNA-binding protein H-NS 636 tdk CDS COG1435 1288566 1289183 + [F] Thymidine kinase 637 cds-NP_707145.1 CDS COG3385 1289469 1290815 - [L] FOG: Transposase and inactivated derivatives 638 adhE CDS COG1454 1290923 1293598 - [C] Alcohol dehydrogenase, class IV 639 ychE CDS COG2095 1294075 1294722 + [U] Multiple antibiotic transporter 640 insB_17 CDS COG1662 1295089 1295484 - [L] Transposase and inactivated derivatives, IS1 family insA_16 CDS COG3677 1295511 1295786 - [L] Transposase and inactivated derivatives 641 oppA CDS COG4166 1296237 1297868 + [E] ABC-type oligopeptide transport system, periplasmic component oppB CDS COG0601 1297954 1298874 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppC CDS COG1173 1298889 1299797 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppD CDS COG0444 1299809 1300822 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component oppF CDS COG4608 1300819 1301823 + [E] ABC-type oligopeptide transport system, ATPase component 642 cds-NP_707155.4 CDS COG3099 1301876 1302283 - [S] Uncharacterized protein conserved in bacteria cls CDS COG1502 1302240 1303700 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 643 kch CDS COG1226 1304071 1305324 - [P] Kef-type K+ transport systems, predicted NAD-binding 644 cds-NP_707158.1 CDS COG2963 1305687 1305989 + [L] Transposase and inactivated derivatives cds-NP_707159.1 CDS COG2801 1306130 1306843 + [L] Transposase and inactivated derivatives 645 yciI CDS COG2350 1306891 1307187 - [S] Uncharacterized protein conserved in bacteria 646 tonB CDS COG0810 1307402 1308130 + [M] Periplasmic protein TonB, links inner and 647 yciA CDS COG1607 1308170 1308568 - [I] Acyl-CoA hydrolase 648 yciB CDS COG2917 1308673 1309212 - [D] Intracellular septation protein A yciC CDS ROG3022 1309242 1309985 - NA 649 yciD CDS COG3047 1310342 1310980 + [M] Outer membrane protein W 650 yciE CDS COG3685 1311040 1311546 - [S] Uncharacterized protein conserved in bacteria yciF CDS COG3685 1311592 1312092 - [S] Uncharacterized protein conserved in bacteria yciG CDS COG3729 1312178 1312414 - [R] General stress protein 651 trpA CDS COG0159 1312737 1313543 - [E] Tryptophan synthase alpha chain trpB CDS COG0133 1313543 1314736 - [E] Tryptophan synthase beta chain trpC CDS COG0134 1314748 1316109 - [E] Indole-3-glycerol phosphate synthase trpD CDS COG0547 1316110 1317705 - [E] Anthranilate phosphoribosyltransferase trpE CDS COG0147 1317705 1319267 - [EH] Anthranilate/para-aminobenzoate synthases component I 652 yciV CDS COG0613 1319650 1320450 + [R] Predicted metal-dependent phosphoesterases (PHP family) yciO CDS COG0009 1320411 1321067 + [J] Putative translation factor (SUA5) 653 btuR CDS COG2109 1322051 1322641 - [H] ATP:corrinoid adenosyltransferase yciK CDS COG0300 1322638 1323396 - [R] Short-chain dehydrogenases of various substrate specificities 654 sohB CDS COG0616 1323616 1324665 + [OU] Periplasmic serine proteases (ClpP class) 655 yciN CDS NA 1324701 1324952 - NA 656 topA CDS COG0550 1325332 1327929 + [L] Topoisomerase IA 657 cysB CDS COG0583 1328139 1329113 + [K] Transcriptional regulator 658 cds-NP_707183.1 CDS NA 1329408 1329572 + NA yciX CDS NA 1329554 1329742 + NA 659 acnA CDS COG1048 1330115 1332790 + [C] Aconitase A 660 ribA CDS COG0807 1332854 1333444 - [H] GTP cyclohydrolase II 661 pgpB CDS COG0671 1333614 1334378 + [I] Membrane-associated phospholipid phosphatase 662 yciS CDS COG3771 1334527 1334835 + [S] Predicted membrane protein yciM CDS COG2956 1334842 1336011 + [G] Predicted N-acetylglucosaminyl transferase 663 pyrF CDS COG0284 1336204 1336941 + [F] Orotidine-5'-phosphate decarboxylase yciH CDS COG0023 1336938 1337267 + [J] Translation initiation factor 1 (eIF-1/SUI1) and 664 osmB CDS ROG6708 1337394 1337612 - NA 665 cds-NP_707193.1 CDS COG1349 1337881 1338630 - [KG] Transcriptional regulators of sugar metabolism 666 cds-NP_707194.1 CDS NA 1338720 1338902 - NA 667 rnb CDS COG4776 1341250 1343184 - [K] Exoribonuclease II 668 yciW CDS COG4950 1343252 1344379 - [S] Uncharacterized protein conserved in bacteria 669 fabI CDS COG0623 1344523 1345311 - [I] Enoyl-[acyl-carrier-protein] reductase (NADH) 670 ycjD CDS COG2852 1345679 1346032 - [S] Uncharacterized protein conserved in bacteria sapF CDS COG4167 1346100 1346906 - [V] ABC-type antimicrobial peptide transport system, ATPase sapD CDS COG4170 1346908 1347900 - [V] ABC-type antimicrobial peptide transport system, ATPase sapC CDS COG4171 1347900 1348790 - [V] ABC-type antimicrobial peptide transport system, permease sapB CDS COG4168 1348777 1349742 - [V] ABC-type antimicrobial peptide transport system, permease sapA CDS COG0747 1349739 1351382 - [E] ABC-type dipeptide transport system, periplasmic component 671 ymjA CDS NA 1351695 1351940 - NA 672 ycjJ CDS COG0531 1352074 1353459 - [E] Amino acid transporters 673 cds-NP_707206.2 CDS COG0174 1353762 1355180 - [E] Glutamine synthetase 674 puuD CDS COG2071 1355380 1356156 + [R] Predicted glutamine amidotransferases ycjC CDS COG1396 1356183 1356740 + [K] Predicted transcriptional regulators aldH CDS COG1012 1356890 1358377 + [C] NAD-dependent aldehyde dehydrogenases ordL CDS COG0665 1358379 1359659 + [E] Glycine/D-amino acid oxidases (deaminating) goaG CDS COG0160 1359697 1360962 + [E] 4-aminobutyrate aminotransferase and related aminotransferases 675 pspF CDS COG1221 1361082 1362074 - [KT] Transcriptional regulators containing an AAA-type ATPase 676 pspA CDS COG1842 1362226 1362894 + [KT] Phage shock protein A (IM30), suppresses pspB CDS ROG0730 1362948 1363172 + NA pspC CDS COG1983 1363172 1363531 + [KT] Putative stress-responsive transcriptional regulator pspD CDS NA 1363540 1363761 + NA pspE CDS COG0607 1363804 1364151 + [P] Rhodanese-related sulfurtransferase 677 insA_17 CDS COG3677 1365522 1365797 + [L] Transposase and inactivated derivatives 678 ycjO CDS COG1175 1368123 1369004 + [G] ABC-type sugar transport systems, permease components ycjP CDS COG0395 1368991 1369833 + [G] ABC-type sugar transport system, permease component ycjQ CDS COG1063 1369864 1370916 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 679 ycjT CDS COG1554 1372770 1375037 + [G] Trehalose and maltose hydrolases (possible phosphorylases) ycjU CDS COG0637 1375034 1375693 + [R] Predicted phosphatase/phosphohexomutase ycjV CDS COG3839 1375707 1376675 + [G] ABC-type sugar transport systems, ATPase components 680 ycjW CDS COG1609 1377844 1378842 - [K] Transcriptional regulators 681 ycjX CDS COG3106 1378998 1380395 + [R] Predicted ATPase ycjF CDS COG3768 1380392 1381453 + [S] Predicted membrane protein tyrR CDS COG3283 1381601 1383142 + [KE] Transcriptional regulator of aromatic amino acids 682 tpx CDS COG2077 1383186 1383692 - [O] Peroxiredoxin 683 ycjG CDS COG4948 1383811 1384776 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of 684 ycjI CDS COG2866 1384751 1385479 - [E] Predicted carboxypeptidase 685 cds-NP_707232.2 CDS COG0702 1385770 1386408 - [MG] Predicted nucleoside-diphosphate-sugar epimerases cds-NP_707233.1 CDS COG1073 1386426 1386956 - [R] Hydrolases of the alpha/beta superfamily 686 cds-NP_707234.1 CDS COG3547 1387236 1388432 + [L] Transposase and inactivated derivatives 687 ycjY CDS COG1073 1388808 1389728 - [R] Hydrolases of the alpha/beta superfamily 688 cds-NP_707237.1 CDS COG2801 1390345 1391163 - [L] Transposase and inactivated derivatives cds-NP_707238.1 CDS COG2963 1391199 1391501 - [L] Transposase and inactivated derivatives 689 cds-NP_707239.1 CDS COG2801 1392029 1392934 - [L] Transposase and inactivated derivatives cds-NP_707240.3 CDS COG2963 1392892 1393302 - [L] Transposase and inactivated derivatives 690 cds-NP_707241.4 CDS COG1484 1394096 1394842 + [L] DNA replication protein cds-NP_707242.1 CDS COG1349 1394857 1395279 + [KG] Transcriptional regulators of sugar metabolism cds-NP_707243.1 CDS NA 1395280 1395693 + NA 691 cds-NP_707244.1 CDS NA 1395786 1396004 + NA cds-NP_707245.1 CDS COG1403 1396006 1396371 + [V] Restriction endonuclease cds-NP_707246.1 CDS NA 1396368 1397033 + NA cds-NP_707247.1 CDS NA 1397033 1397398 + NA 692 cds-YP_008439244.1 CDS NA 1397796 1398008 + NA 693 cds-YP_008439245.1 CDS NA 1398245 1398496 + NA 694 insB_18 CDS COG1662 1398514 1398909 - [L] Transposase and inactivated derivatives, IS1 family insA_18 CDS COG3677 1398936 1399211 - [L] Transposase and inactivated derivatives 695 cds-NP_707250.1 CDS NA 1399345 1399944 + NA cds-NP_707251.1 CDS NA 1399944 1400234 + NA cds-NP_707252.1 CDS NA 1400231 1400785 + NA 696 cds-NP_707253.1 CDS COG2963 1401173 1401475 + [L] Transposase and inactivated derivatives cds-NP_707254.1 CDS COG2801 1401511 1402329 + [L] Transposase and inactivated derivatives 697 cds-NP_707256.1 CDS NA 1402922 1403293 + NA cds-NP_707257.2 CDS NA 1403317 1404585 + NA cds-NP_707258.2 CDS NA 1404596 1405159 + NA 698 sitD CDS COG1108 1405360 1406217 - [P] ABC-type Mn2+/Zn2+ transport systems, permease components sitC CDS COG1108 1406214 1407071 - [P] ABC-type Mn2+/Zn2+ transport systems, permease components sitB CDS COG1121 1407068 1407895 - [P] ABC-type Mn/Zn transport systems, ATPase component sitA CDS COG0803 1407895 1408785 - [P] ABC-type metal ion transport system, periplasmic 699 insA_19 CDS COG3677 1409936 1410211 + [L] Transposase and inactivated derivatives insB_19 CDS COG1662 1410238 1410633 + [L] Transposase and inactivated derivatives, IS1 family 700 cds-NP_707266.2 CDS COG2801 1411037 1411657 - [L] Transposase and inactivated derivatives cds-NP_707267.1 CDS COG2963 1411970 1412296 - [L] Transposase and inactivated derivatives 701 cds-NP_707268.2 CDS ROG7711 1412371 1413414 - NA cds-NP_707269.1 CDS NA 1413474 1413794 - NA 702 cds-NP_707271.1 CDS ROG6166 1415037 1416461 - NA 703 cds-NP_707272.2 CDS NA 1416561 1416836 - NA 704 kil CDS NA 1417081 1417302 - NA 705 cds-NP_707274.1 CDS COG2801 1417379 1418284 - [L] Transposase and inactivated derivatives cds-NP_707275.1 CDS COG2963 1418242 1418652 - [L] Transposase and inactivated derivatives 706 cds-NP_707278.1 CDS NA 1421321 1421884 + NA 707 ipaH_3 CDS COG4886 1422064 1423779 - [S] Leucine-rich repeat (LRR) protein 708 insB_20 CDS COG1662 1424623 1425018 + [L] Transposase and inactivated derivatives, IS1 family 709 cds-NP_707282.1 CDS COG2801 1426147 1426965 + [L] Transposase and inactivated derivatives 710 cds-NP_707283.1 CDS NA 1427222 1427497 - NA cds-NP_707284.2 CDS NA 1427518 1427754 - NA 711 yebU CDS COG0144 1428046 1429266 - [J] tRNA and rRNA cytosine-C5-methylases 712 cds-NP_707286.1 CDS COG2995 1431980 1433263 - [S] Uncharacterized paraquat-inducible protein A 713 cds-NP_707287.1 CDS COG1956 1433393 1433890 + [T] GAF domain-containing protein yebJ CDS COG3109 1433987 1434685 + [T] Activator of osmoprotectant transporter ProP prc CDS COG0793 1434711 1436753 + [M] Periplasmic protease 714 htpX CDS COG0501 1436948 1437826 + [O] Zn-dependent protease with chaperone function 715 cds-NP_707291.1 CDS ROG2472 1437872 1439356 - NA 716 cds-NP_707292.1 CDS COG1414 1439422 1440213 + [K] Transcriptional regulator 717 cds-NP_707293.1 CDS ROG7461 1440356 1440595 - NA 718 cds-NP_707294.1 CDS NA 1440754 1440897 + NA 719 cds-NP_707295.1 CDS ROG1154 1440972 1441259 + NA 720 cds-NP_707296.1 CDS NA 1441929 1442072 + NA cspC CDS COG1278 1442085 1442294 + [K] Cold shock proteins 721 rrmA CDS COG0500 1442460 1443269 + [QR] SAM-dependent methyltransferases 722 insB_21 CDS COG1662 1444296 1444691 - [L] Transposase and inactivated derivatives, IS1 family insA_20 CDS COG3677 1444718 1444993 - [L] Transposase and inactivated derivatives cds-NP_707302.1 CDS COG4811 1445022 1445498 - [S] Predicted membrane protein manZ CDS COG3716 1445553 1446413 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID manY CDS COG3715 1446417 1447217 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC manX CDS COG3444 1447280 1448251 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 723 yoaE CDS COG0861 1448714 1450264 + [P] Membrane protein TerC, possibly involved in 724 cds-NP_707307.2 CDS COG2200 1450268 1451866 - [T] FOG: EAL domain 725 sdaA CDS COG1760 1451997 1453361 - [E] L-serine deaminase 726 yeaB CDS COG0494 1453545 1454123 - [LR] NTP pyrophosphohydrolases including oxidative damage repair pabB CDS COG0147 1454127 1455488 - [EH] Anthranilate/para-aminobenzoate synthases component I 727 cds-NP_707311.1 CDS COG3140 1455562 1455741 + [S] Uncharacterized protein conserved in bacteria 728 cds-NP_707312.1 CDS COG2731 1455861 1456220 - [G] Beta-galactosidase, beta subunit 729 cds-NP_707313.1 CDS COG0251 1456576 1456968 - [J] Putative translation initiation inhibitor, yjgF family 730 cds-NP_707314.1 CDS COG1199 1457052 1458962 + [KL] Rad3-related DNA helicases yeaZ CDS COG1214 1459020 1459715 + [O] Inactive homolog of metal-dependent proteases, putative cds-NP_707316.1 CDS COG3065 1459755 1460336 + [M] Starvation-inducible outer membrane lipoprotein 731 fadD CDS COG0318 1460476 1462227 + [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II rnd CDS COG0349 1462309 1463424 + [J] Ribonuclease D 732 yeaX CDS COG1018 1463478 1464443 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 733 cds-NP_707321.1 CDS COG2963 1466391 1466693 + [L] Transposase and inactivated derivatives cds-NP_707322.1 CDS COG2801 1466729 1467547 + [L] Transposase and inactivated derivatives 734 yeaP CDS COG2199 1468458 1469483 - [T] FOG: GGDEF domain 735 yoaF CDS COG3042 1469666 1469920 + [R] Putative hemolysin 736 yeaO CDS COG3189 1469942 1470310 - [S] Uncharacterized conserved protein 737 yeaN CDS COG2807 1470463 1471524 - [P] Cyanate permease 738 yeaL CDS COG2707 1472396 1472842 - [S] Predicted membrane protein 739 cds-NP_707328.1 CDS ROG3558 1472964 1473116 + NA 740 yeaK CDS COG2606 1473117 1473620 - [S] Uncharacterized conserved protein 741 cds-NP_707330.1 CDS COG2963 1474805 1475107 + [L] Transposase and inactivated derivatives cds-NP_707331.1 CDS COG2801 1475143 1475961 + [L] Transposase and inactivated derivatives 742 yeaF CDS COG3713 1476368 1477114 + [M] Outer membrane protein V 743 cds-NP_707333.1 CDS COG0667 1477204 1477965 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 744 yeaD CDS COG0676 1478016 1478900 - [G] Uncharacterized enzymes related to aldose 1-epimerase gapA CDS COG0057 1478984 1479979 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 745 yeaA CDS COG0229 1480321 1480734 + [O] Conserved domain frequently associated with peptide cds-NP_707337.2 CDS COG3139 1480776 1481048 + [S] Uncharacterized protein conserved in bacteria 746 cds-NP_707338.1 CDS COG1063 1481418 1482494 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases cds-NP_707339.2 CDS COG1585 1482521 1483900 + [OU] Membrane protein implicated in regulation of 747 cds-NP_707340.1 CDS COG0191 1484983 1485819 + [G] Fructose/tagatose bisphosphate aldolase cds-NP_707341.2 CDS COG0524 1485824 1486771 + [G] Sugar kinases, ribokinase family cds-NP_707342.2 CDS COG0667 1486826 1487761 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) cds-NP_707343.1 CDS COG1349 1487898 1488656 + [KG] Transcriptional regulators of sugar metabolism 748 ydjE CDS NA 1488774 1490132 + NA 749 ydjB CDS COG1335 1490225 1490884 - [Q] Amidases related to nicotinamidase ansA CDS COG0252 1490877 1491893 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 750 sppA CDS COG0616 1492060 1493916 - [OU] Periplasmic serine proteases (ClpP class) 751 ydjA CDS COG0778 1494095 1494628 + [C] Nitroreductase 752 selD CDS COG0709 1494745 1495788 + [E] Selenophosphate synthase topB CDS COG0550 1495793 1497754 + [L] Topoisomerase IA ynjI CDS ROG2994 1497770 1498921 + NA 753 gdhA CDS COG0334 1499038 1500204 - [E] Glutamate dehydrogenase/leucine dehydrogenase 754 cds-NP_707353.3 CDS COG2963 1500285 1500695 + [L] Transposase and inactivated derivatives cds-NP_707354.1 CDS COG2801 1500653 1501558 + [L] Transposase and inactivated derivatives 755 cds-NP_707355.1 CDS NA 1501953 1502225 + NA 756 cds-NP_707356.1 CDS COG1051 1502191 1502598 - [F] ADP-ribose pyrophosphatase 757 cds-NP_707357.2 CDS ROG5552 1502685 1503305 + NA 758 cds-NP_707358.2 CDS COG4136 1504688 1505341 - [R] ABC-type uncharacterized transport system, ATPase component 759 cds-NP_707359.1 CDS COG3385 1507704 1509050 + [L] FOG: Transposase and inactivated derivatives 760 ydjZ CDS COG0398 1509947 1510651 - [S] Uncharacterized conserved protein ydjY CDS NA 1510669 1511508 - NA ydjX CDS COG0398 1511351 1512061 - [S] Uncharacterized conserved protein 761 xthA CDS COG0708 1512228 1513034 - [L] Exonuclease III 762 cds-NP_707365.2 CDS COG3138 1514700 1515731 + [E] Arginine/ornithine N-succinyltransferase beta subunit cds-NP_707366.3 CDS COG1012 1515671 1517149 + [C] NAD-dependent aldehyde dehydrogenases 763 ydjS CDS COG2988 1518624 1519496 + [E] Succinylglutamate desuccinylase 764 spy CDS COG3678 1519826 1520311 + [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 765 cds-NP_707369.2 CDS COG3758 1520514 1521089 + [S] Uncharacterized protein conserved in bacteria 766 cds-NP_707370.2 CDS COG0322 1521049 1521936 - [L] Nuclease subunit of the excinuclease complex 767 nadE CDS COG0171 1522166 1522993 - [H] NAD synthase 768 osmE CDS ROG1335 1523195 1523533 + NA 769 celA CDS COG1440 1523832 1524152 + [G] Phosphotransferase system cellobiose-specific component IIB celB CDS COG1455 1524237 1525586 + [G] Phosphotransferase system cellobiose-specific component IIC celC CDS COG1447 1525645 1525995 + [G] Phosphotransferase system cellobiose-specific component IIA 770 insB_22 CDS COG1662 1526695 1527090 - [L] Transposase and inactivated derivatives, IS1 family insA_21 CDS COG3677 1527117 1527392 - [L] Transposase and inactivated derivatives 771 celF CDS COG1486 1527727 1529079 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases ydjC CDS COG3394 1529092 1529850 + [S] Uncharacterized protein conserved in bacteria 772 katE CDS COG0753 1529897 1532158 - [P] Catalase 773 cds-NP_707381.2 CDS NA 1532341 1532604 + NA 774 ydjO CDS NA 1532881 1533621 + NA 775 insB_23 CDS COG1662 1533632 1534027 - [L] Transposase and inactivated derivatives, IS1 family insA_22 CDS COG3677 1534054 1534329 - [L] Transposase and inactivated derivatives 776 cds-NP_707386.2 CDS COG1988 1535999 1536589 - [R] Predicted membrane-bound metal-dependent hydrolases 777 yniC CDS COG0637 1536752 1537420 - [R] Predicted phosphatase/phosphohexomutase 778 cds-NP_707388.1 CDS NA 1537567 1538103 + NA 779 cds-NP_707389.1 CDS COG3001 1538144 1539004 - [G] Fructosamine-3-kinase 780 cds-NP_707390.1 CDS NA 1539110 1539400 - NA 781 pfkB CDS COG1105 1539501 1540430 - [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase 782 cds-NP_707392.2 CDS COG3137 1540750 1541475 + [M] Putative salt-induced outer membrane protein 783 cds-YP_008439246.1 CDS NA 1541528 1541746 - NA 784 insB_24 CDS COG1662 1542782 1543177 - [L] Transposase and inactivated derivatives, IS1 family insA_23 CDS COG3677 1543204 1543479 - [L] Transposase and inactivated derivatives 785 thrS CDS COG0441 1544438 1546366 + [J] Threonyl-tRNA synthetase infC CDS COG0290 1546478 1546912 + [J] Translation initiation factor 3 (IF-3) rpmI CDS COG0291 1547009 1547206 + [J] Ribosomal protein L35 rplT CDS COG0292 1547259 1547615 + [J] Ribosomal protein L20 pheS CDS COG0016 1548065 1549048 + [J] Phenylalanyl-tRNA synthetase alpha subunit pheT CDS COG0072 1549063 1551450 + [J] Phenylalanyl-tRNA synthetase beta subunit ihfA CDS COG0776 1551455 1551754 + [L] Bacterial nucleoid DNA-binding protein 786 btuC CDS COG4139 1551855 1552835 + [H] ABC-type cobalamin transport system, permease component btuE CDS COG0386 1552898 1553449 + [O] Glutathione peroxidase btuD CDS COG4138 1553449 1554198 + [H] ABC-type cobalamin transport system, ATPase component 787 nlpC CDS COG0791 1554276 1554740 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 788 cds-NP_707407.1 CDS NA 1554987 1555700 + NA 789 cds-NP_707408.1 CDS COG0397 1555764 1557200 + [S] Uncharacterized conserved protein 790 cds-YP_008439247.1 CDS COG4256 1557204 1557422 - [P] Hemin uptake protein 791 aroH CDS COG0722 1557527 1558573 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 792 ydiA CDS COG1806 1558730 1559563 - [S] Uncharacterized protein conserved in bacteria 793 ppsA CDS COG0574 1559895 1562273 + [G] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 794 ydiD CDS COG0318 1562330 1564030 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ydiT CDS COG2440 1564033 1564326 - [C] Ferredoxin-like protein ydiS CDS COG0644 1564323 1565612 - [C] Dehydrogenases (flavoproteins) ydiR CDS COG2025 1565668 1566606 - [C] Electron transfer flavoprotein, alpha subunit ydiQ CDS COG2086 1566626 1567390 - [C] Electron transfer flavoprotein, beta subunit 795 insA_24 CDS COG3677 1568246 1568521 + [L] Transposase and inactivated derivatives insB_25 CDS COG1662 1568548 1568943 + [L] Transposase and inactivated derivatives, IS1 family 796 cds-NP_707419.1 CDS COG2207 1569506 1570267 - [K] AraC-type DNA-binding domain-containing proteins 797 cds-YP_008439248.1 CDS NA 1570335 1570538 - NA 798 cds-NP_707420.1 CDS COG0243 1570786 1573065 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 799 cds-NP_707421.1 CDS COG3539 1573399 1574136 - [NU] P pilus assembly protein, pilin FimA 800 insA_25 CDS COG3677 1574204 1574479 + [L] Transposase and inactivated derivatives insB_26 CDS COG1662 1574506 1574901 + [L] Transposase and inactivated derivatives, IS1 family 801 cds-NP_707424.1 CDS COG2801 1574979 1575797 + [L] Transposase and inactivated derivatives 802 cds-YP_008439249.1 CDS NA 1576151 1576312 - NA cds-YP_008439250.1 CDS NA 1576309 1576512 - NA 803 ycgW CDS NA 1576757 1577092 + NA 804 rna-SF4467 tRNA NA 1578004 1578080 - NA rna-SF4468 tRNA NA 1578182 1578257 - NA 805 cds-NP_707426.1 CDS COG0484 1578402 1579223 - [O] DnaJ-class molecular chaperone with C-terminal Zn rus CDS COG4570 1579238 1579594 - [L] Holliday junction resolvase cds-NP_707428.1 CDS ROG3696 1579607 1580656 - NA 806 cds-NP_707429.2 CDS NA 1581003 1581251 - NA 807 cds-YP_008439251.1 CDS NA 1581472 1581627 - NA 808 relE CDS COG2026 1581699 1581986 - [JD] Cytotoxic translational repressor of toxin-antitoxin stability relB CDS COG3077 1581986 1582225 - [L] DNA-damage-inducible protein J 809 cds-NP_707432.1 CDS COG2801 1582552 1583265 - [L] Transposase and inactivated derivatives cds-NP_707433.1 CDS COG2963 1583406 1583708 - [L] Transposase and inactivated derivatives 810 cds-NP_707434.1 CDS COG0477 1583809 1584789 + [GEPR] Permeases of the major facilitator superfamily ydfI CDS COG0246 1584878 1586338 + [G] Mannitol-1-phosphate/altronate dehydrogenases 811 cds-NP_707436.1 CDS NA 1586374 1586577 - NA 812 ydfG CDS COG4221 1587530 1588276 - [R] Short-chain alcohol dehydrogenase of unknown specificity 813 dcp CDS COG0339 1588413 1590458 + [E] Zn-dependent oligopeptidases 814 ydeJ CDS COG1546 1590503 1591021 - [R] Uncharacterized protein (competence- and mitomycin-induced) 815 cds-NP_707441.1 CDS COG2801 1591925 1592743 + [L] Transposase and inactivated derivatives 816 ydeF CDS COG0477 1593211 1594329 - [GEPR] Permeases of the major facilitator superfamily 817 ydeD CDS COG0697 1594692 1595492 + [GER] Permeases of the drug/metabolite transporter (DMT) 818 marB CDS NA 1595523 1595741 - NA marA CDS COG2207 1595773 1596156 - [K] AraC-type DNA-binding domain-containing proteins marR CDS COG1846 1596176 1596553 - [K] Transcriptional regulators 819 ydeB CDS COG2095 1596822 1597487 + [U] Multiple antibiotic transporter 820 cds-NP_707449.1 CDS NA 1598852 1599967 - NA 821 yneH CDS COG2066 1601046 1601972 + [E] Glutaminase 822 cds-NP_707452.2 CDS COG2199 1602941 1603888 + [T] FOG: GGDEF domain 823 uxaB CDS COG0246 1604115 1605566 + [G] Mannitol-1-phosphate/altronate dehydrogenases 824 cds-NP_707455.1 CDS NA 1607071 1607259 - NA 825 cds-NP_707456.1 CDS COG3781 1607409 1608374 + [S] Predicted membrane protein 826 cds-NP_707457.1 CDS COG4106 1608378 1609136 - [R] Trans-aconitate methyltransferase cds-NP_707458.1 CDS COG1359 1609176 1609466 - [S] Uncharacterized conserved protein cds-NP_707459.1 CDS COG1830 1609490 1610260 - [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes cds-NP_707460.3 CDS COG2801 1610285 1611124 - [L] Transposase and inactivated derivatives 827 ydeW CDS COG2390 1612684 1613637 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 828 cds-NP_707463.1 CDS COG1129 1613886 1615421 + [G] ABC-type sugar transport system, ATPase component ydeY CDS COG1172 1615415 1616443 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components ydeZ CDS COG1172 1616443 1617435 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 829 cds-NP_707466.3 CDS COG2963 1618640 1619050 + [L] Transposase and inactivated derivatives cds-NP_707467.3 CDS COG2801 1619099 1619923 + [L] Transposase and inactivated derivatives 830 cds-NP_707468.1 CDS COG2801 1619973 1620785 - [L] Transposase and inactivated derivatives cds-NP_707469.1 CDS COG2963 1620842 1621126 - [L] Transposase and inactivated derivatives 831 rspA CDS COG4948 1621197 1622411 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of 832 cds-NP_707471.2 CDS COG1742 1622617 1622943 - [S] Uncharacterized conserved protein 833 cds-NP_707472.1 CDS ROG7712 1623078 1623419 + NA 834 ynfC CDS NA 1624017 1624763 - NA 835 cds-NP_707474.2 CDS NA 1624835 1625140 + NA 836 cds-NP_707477.2 CDS NA 1627483 1628472 - NA 837 cds-NP_707478.1 CDS NA 1628557 1629048 - NA 838 cds-NP_707479.2 CDS NA 1629369 1629869 - NA cds-NP_707480.2 CDS NA 1629859 1630374 - NA 839 cds-NP_707481.1 CDS NA 1630805 1631173 - NA 840 cds-NP_707482.1 CDS ROG4978 1631585 1632070 - NA 841 cds-NP_707483.1 CDS COG2801 1632142 1632981 - [L] Transposase and inactivated derivatives cds-NP_707484.1 CDS COG2963 1633008 1633346 - [L] Transposase and inactivated derivatives cds-NP_707485.1 CDS NA 1633380 1634417 - NA 842 cds-NP_707486.1 CDS COG0243 1634343 1635509 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing 843 cds-NP_707487.1 CDS COG0437 1637619 1638236 + [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_707488.2 CDS COG3302 1638238 1639092 + [R] DMSO reductase anchor subunit cds-NP_707489.2 CDS COG3381 1639135 1639749 + [R] Uncharacterized component of anaerobic dehydrogenases 844 cds-NP_707490.3 CDS COG0038 1639884 1641200 + [P] Chloride channel protein EriC 845 bioD_2 CDS COG0132 1641153 1641848 - [H] Dethiobiotin synthetase 846 mlc CDS COG1940 1641973 1643193 - [KG] Transcriptional regulator/sugar kinase 847 ynfL CDS COG0583 1643328 1644230 - [K] Transcriptional regulator 848 asr CDS COG2358 1645987 1646322 + [R] TRAP-type uncharacterized transport system, periplasmic component 849 cds-NP_707495.1 CDS COG3591 1646598 1647419 + [E] V8-like Glu-specific endopeptidase 850 cds-NP_707496.1 CDS COG2076 1647458 1647787 - [P] Membrane transporters of cations and cationic cds-NP_707497.1 CDS COG2076 1647774 1648139 - [P] Membrane transporters of cations and cationic 851 tqsA CDS COG0628 1648550 1649584 + [R] Predicted permease 852 pntB CDS COG1282 1649609 1650997 - [C] NAD/NADP transhydrogenase beta subunit pntA CDS COG3288 1651008 1652555 - [C] NAD/NADP transhydrogenase alpha subunit 853 cds-NP_707501.1 CDS NA 1653064 1654008 + NA 854 cds-NP_707502.1 CDS COG0531 1654194 1655576 + [E] Amino acid transporters ydgB CDS COG1028 1655613 1656335 + [IQR] Dehydrogenases with different specificities (related to 855 ydgC CDS COG3136 1656332 1656667 - [R] Uncharacterized membrane protein required for alginate 856 rstA CDS COG0745 1656796 1657539 + [TK] Response regulators consisting of a CheY-like 857 cds-NP_707507.2 CDS COG1823 1657764 1659083 + [R] Predicted Na+/dicarboxylate symporter 858 rstB CDS COG2205 1659262 1660563 + [T] Osmosensitive K+ channel histidine kinase 859 tus CDS NA 1660639 1661568 + NA 860 fumC CDS COG0114 1661565 1662968 - [C] Fumarase fumA CDS COG1951 1663111 1664757 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class 861 manA CDS COG1482 1664956 1666131 + [G] Phosphomannose isomerase 862 ydgA CDS COG5339 1666232 1667740 + [S] Uncharacterized protein conserved in bacteria 863 uidA CDS COG3250 1670302 1672005 - [G] Beta-galactosidase/beta-glucuronidase 864 uidR CDS COG1309 1672393 1672983 - [K] Transcriptional regulator 865 insB_27 CDS COG1662 1673388 1673783 - [L] Transposase and inactivated derivatives, IS1 family insA_26 CDS COG3677 1673810 1674085 - [L] Transposase and inactivated derivatives cds-NP_707519.1 CDS COG1028 1674136 1674756 - [IQR] Dehydrogenases with different specificities (related to malI CDS COG1609 1674868 1675896 - [K] Transcriptional regulators 866 malX CDS COG1263 1676071 1677663 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific malY CDS COG1168 1677673 1678845 + [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and 867 add CDS COG1816 1678949 1679950 + [F] Adenosine deaminase 868 cds-NP_707524.3 CDS COG0673 1679986 1681065 - [R] Predicted dehydrogenases and related proteins 869 cds-YP_008439252.1 CDS NA 1681194 1681394 + NA 870 cds-NP_707525.1 CDS NA 1681667 1681882 + NA 871 cds-NP_707526.2 CDS NA 1681968 1682408 + NA 872 cds-NP_707527.1 CDS COG4657 1682485 1683066 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA cds-NP_707528.1 CDS COG2878 1683066 1683644 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB cds-NP_707529.1 CDS COG4656 1683637 1685859 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC rnfD CDS COG4658 1685860 1686918 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD cds-NP_707531.1 CDS COG4659 1686922 1687542 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfG ydgQ CDS COG4660 1687546 1688241 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE nth CDS COG0177 1688241 1688876 + [L] Predicted EndoIII-related endonuclease 873 tppB CDS COG3104 1689487 1690989 + [E] Dipeptide/tripeptide permease gst CDS COG0625 1691095 1691700 + [O] Glutathione S-transferase 874 pdxY CDS COG2240 1691744 1692607 - [H] Pyridoxal/pyridoxine/pyridoxamine kinase tyrS CDS COG0162 1692714 1693988 - [J] Tyrosyl-tRNA synthetase pdxH CDS COG0259 1694117 1694773 - [H] Pyridoxamine-phosphate oxidase ydhA CDS COG3895 1694832 1695080 - [R] Predicted periplasmic protein cds-NP_707540.1 CDS COG2801 1695102 1696007 - [L] Transposase and inactivated derivatives cds-NP_707541.1 CDS COG2963 1695965 1696375 - [L] Transposase and inactivated derivatives 875 anmK CDS COG2377 1696595 1697704 - [O] Predicted molecular chaperone distantly related to 876 slyB CDS COG3133 1697978 1698445 + [M] Outer membrane lipoprotein 877 slyA CDS COG1846 1698492 1698932 - [K] Transcriptional regulators 878 cds-NP_707545.1 CDS NA 1699127 1699363 + NA cds-NP_707546.1 CDS COG1566 1699357 1700223 + [V] Multidrug resistance efflux pump 879 sodC CDS COG2032 1702236 1702772 - [P] Cu/Zn superoxide dismutase cds-NP_707548.1 CDS COG4989 1702838 1703734 - [R] Predicted oxidoreductase cds-NP_707549.2 CDS COG3313 1703783 1704160 - [R] Predicted Fe-S protein 880 cds-NP_707550.2 CDS COG1309 1704125 1704724 + [K] Transcriptional regulator nemA CDS COG1902 1704761 1705858 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family gloA CDS COG0346 1705939 1706346 + [E] Lactoylglutathione lyase and related lyases 881 rnt CDS COG0847 1706449 1707096 + [L] DNA polymerase III, epsilon subunit and 882 ydhD CDS COG0278 1713446 1713793 - [O] Glutaredoxin-related protein 883 ydhO CDS COG0791 1714128 1714955 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 884 sodB CDS COG0605 1715083 1715664 + [P] Superoxide dismutase 885 cds-NP_707557.1 CDS COG2814 1715810 1716979 - [G] Arabinose efflux permease 886 ydhB CDS COG0583 1718584 1719525 - [K] Transcriptional regulator 887 ydhC CDS COG0477 1719638 1720849 + [GEPR] Permeases of the major facilitator superfamily 888 cfa CDS COG2230 1721140 1722288 + [M] Cyclopropane fatty acid synthase and related 889 ribE CDS COG0307 1722328 1722969 - [H] Riboflavin synthase alpha chain 890 cds-NP_707565.1 CDS COG3468 1725935 1727191 - [MU] Type V secretory pathway, adhesin AidA 891 rna-SF4469 tRNA NA 1727499 1727575 + NA 892 cds-NP_707566.1 CDS ROG2175 1727683 1727988 + NA 893 cds-NP_707567.1 CDS ROG6905 1729548 1730360 - NA ydhU CDS COG4117 1730364 1731149 - [C] Thiosulfate reductase cytochrome B subunit (membrane cds-NP_707569.1 CDS COG0437 1731146 1731865 - [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_707570.2 CDS NA 1731878 1732516 - NA ydhV CDS COG2414 1732529 1734325 - [C] Aldehyde:ferredoxin oxidoreductase cds-NP_707572.1 CDS COG1142 1734651 1735277 - [C] Fe-S-cluster-containing hydrogenase components 2 894 cds-NP_707573.1 CDS NA 1735733 1735942 - NA 895 insB_28 CDS COG1662 1736223 1736726 + [L] Transposase and inactivated derivatives, IS1 family 896 pykF CDS COG0469 1737275 1738687 + [G] Pyruvate kinase 897 lpp CDS COG4238 1738999 1739235 + [M] Murein lipoprotein 898 ynhG CDS COG1376 1739298 1740302 - [S] Uncharacterized protein conserved in bacteria 899 ynhA CDS COG2166 1740451 1740867 - [R] SufE protein probably involved in Fe-S 900 cds-NP_707579.1 CDS ROG0762 1741814 1743022 + NA 901 ynhC CDS COG0719 1743435 1744706 - [O] ABC-type transport system involved in Fe-S sufC CDS COG0396 1744681 1745427 - [O] ABC-type transport system involved in Fe-S ynhE CDS COG0719 1745437 1746924 - [O] ABC-type transport system involved in Fe-S sufA CDS COG0316 1746933 1747301 - [S] Uncharacterized conserved protein 902 cds-NP_707584.1 CDS NA 1747849 1748118 - NA cds-NP_707585.1 CDS COG2050 1748137 1748547 - [Q] Uncharacterized protein, possibly involved in aromatic ydiJ CDS COG0277 1748544 1751600 - [C] FAD/FMN-containing dehydrogenases 903 cds-NP_707587.1 CDS NA 1751989 1753101 + NA 904 cds-NP_707588.2 CDS NA 1753530 1753886 + NA 905 cds-NP_707589.2 CDS COG0477 1754046 1755191 + [GEPR] Permeases of the major facilitator superfamily cds-NP_707590.1 CDS COG0477 1755485 1756645 + [GEPR] Permeases of the major facilitator superfamily aroE CDS COG0169 1756657 1757523 + [E] Shikimate 5-dehydrogenase aroD CDS COG0710 1757554 1758312 + [E] 3-dehydroquinate dehydratase 906 insB_29 CDS COG1662 1758394 1758789 - [L] Transposase and inactivated derivatives, IS1 family insA_27 CDS COG3677 1758816 1759091 - [L] Transposase and inactivated derivatives 907 ydeN CDS COG3119 1759201 1760691 + [P] Arylsulfatase A and related enzymes cds-NP_707596.2 CDS COG0641 1760743 1761900 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 908 yddB CDS ROG2295 1763914 1766274 + NA 909 insB_30 CDS COG1662 1766544 1767047 - [L] Transposase and inactivated derivatives, IS1 family 910 insA_28 CDS COG3677 1769087 1769362 + [L] Transposase and inactivated derivatives insB_31 CDS COG1662 1769389 1769784 + [L] Transposase and inactivated derivatives, IS1 family 911 gadB CDS COG0076 1770262 1771662 + [E] Glutamate decarboxylase and related PLP-dependent proteins xasA CDS COG0531 1771818 1773353 + [E] Amino acid transporters 912 cds-NP_707604.1 CDS COG1649 1773484 1774803 + [S] Uncharacterized protein conserved in bacteria 913 yddV CDS COG2199 1775180 1776325 + [T] FOG: GGDEF domain 914 cds-NP_707606.1 CDS COG1123 1778364 1779350 + [R] ATPase components of various ABC-type transport cds-NP_707607.1 CDS COG1124 1779343 1780113 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 915 osmC CDS COG1764 1780325 1780756 - [O] Predicted redox protein, regulator of disulfide 916 insB_32 CDS COG1662 1780929 1781324 - [L] Transposase and inactivated derivatives, IS1 family insA_29 CDS COG3677 1781351 1781626 - [L] Transposase and inactivated derivatives 917 sfcA CDS COG0281 1781814 1783511 + [C] Malic enzyme adhP CDS COG1064 1783645 1784655 + [R] Zn-dependent alcohol dehydrogenases 918 yddM CDS COG3093 1784723 1785085 + [R] Plasmid maintenance system antidote protein 919 fdnI CDS COG2864 1785313 1785966 - [C] Cytochrome b subunit of formate dehydrogenase fdnH CDS COG0437 1785959 1786843 - [C] Fe-S-cluster-containing hydrogenase components 1 fdnG CDS COG0243 1786856 1789903 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 920 yddG CDS COG0697 1790135 1791016 + [GER] Permeases of the drug/metabolite transporter (DMT) 921 insB_33 CDS COG1662 1791219 1791614 - [L] Transposase and inactivated derivatives, IS1 family insA_30 CDS COG3677 1791641 1791916 - [L] Transposase and inactivated derivatives 922 cds-NP_707620.1 CDS COG3203 1792048 1793148 + [M] Outer membrane protein (porin) 923 cds-NP_707621.1 CDS COG4886 1793312 1793797 + [S] Leucine-rich repeat (LRR) protein 924 insA_31 CDS COG3677 1795184 1795459 + [L] Transposase and inactivated derivatives insB_34 CDS COG1662 1795486 1795881 + [L] Transposase and inactivated derivatives, IS1 family 925 narU CDS COG2223 1796339 1797727 + [P] Nitrate/nitrite transporter 926 cds-NP_707626.1 CDS COG1140 1801546 1802478 + [C] Nitrate reductase beta subunit cds-NP_707627.1 CDS NA 1802456 1802878 + NA cds-NP_707628.1 CDS ROG0048 1802878 1804065 + NA 927 cds-NP_707629.1 CDS COG1802 1804336 1805058 - [K] Transcriptional regulators 928 yncB CDS COG2130 1805163 1806359 - [R] Putative NADP-dependent oxidoreductases cds-NP_707631.1 CDS COG2801 1806396 1807301 - [L] Transposase and inactivated derivatives cds-NP_707632.3 CDS COG2963 1807259 1807669 - [L] Transposase and inactivated derivatives 929 cds-NP_707633.2 CDS COG1247 1807783 1808301 + [M] Sortase and related acyltransferases cds-NP_707634.1 CDS COG3238 1808298 1808747 + [S] Uncharacterized protein conserved in bacteria 930 cds-NP_707635.1 CDS NA 1808748 1808981 - NA 931 cds-NP_707636.1 CDS NA 1809067 1809315 - NA 932 cds-NP_707637.1 CDS COG0110 1809932 1810741 - [R] Acetyltransferase (isoleucine patch superfamily) 933 cds-NP_707638.1 CDS COG1012 1810951 1812375 - [C] NAD-dependent aldehyde dehydrogenases cds-NP_707639.1 CDS COG1177 1812397 1813191 - [E] ABC-type spermidine/putrescine transport system, permease component 934 cds-NP_707640.1 CDS ROG0048 1813871 1815217 + NA 935 tehB CDS COG0500 1817790 1818383 - [QR] SAM-dependent methyltransferases tehA CDS COG1275 1818380 1819372 - [P] Tellurite resistance protein and related permeases 936 cds-NP_707644.1 CDS COG1208 1819496 1820476 + [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation 937 rimL CDS COG1670 1820471 1821007 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins 938 ydcH CDS COG2841 1821070 1821237 - [S] Uncharacterized protein conserved in bacteria 939 mdoD CDS COG3131 1821434 1823089 - [P] Periplasmic glucans biosynthesis protein 940 cds-NP_707649.1 CDS COG5383 1823314 1824657 - [S] Uncharacterized protein conserved in bacteria 941 cds-NP_707650.1 CDS COG0583 1824733 1825797 + [K] Transcriptional regulator 942 trg CDS COG0840 1825835 1827475 - [NT] Methyl-accepting chemotaxis protein 943 cds-NP_707652.1 CDS COG2963 1827851 1828333 + [L] Transposase and inactivated derivatives 944 cds-NP_707653.1 CDS COG2801 1828330 1829148 - [L] Transposase and inactivated derivatives cds-YP_008439253.1 CDS COG2963 1829184 1829486 - [L] Transposase and inactivated derivatives 945 cds-YP_008439254.1 CDS NA 1829861 1830010 + NA 946 ydcA CDS NA 1830082 1830255 - NA 947 cybB CDS COG3038 1830500 1831066 - [C] Cytochrome B561 948 cds-NP_707657.1 CDS COG0057 1831219 1831971 + [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gapC CDS COG0057 1831968 1832219 + [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 949 aldA CDS COG1012 1832261 1833700 - [C] NAD-dependent aldehyde dehydrogenases 950 cds-NP_707660.1 CDS COG2963 1834975 1835277 + [L] Transposase and inactivated derivatives cds-NP_707661.1 CDS COG2801 1835304 1836143 + [L] Transposase and inactivated derivatives cds-NP_707662.1 CDS COG2801 1836188 1836901 + [L] Transposase and inactivated derivatives 951 hrpA CDS COG1643 1837102 1840947 - [L] HrpA-like helicases 952 acpD CDS COG1182 1841205 1841810 + [I] Acyl carrier protein phosphodiesterase 953 cds-YP_008439255.1 CDS COG2453 1841864 1842472 - [T] Predicted protein-tyrosine phosphatase 954 cds-NP_707665.1 CDS COG2963 1842573 1842875 + [L] Transposase and inactivated derivatives cds-NP_707666.1 CDS COG2801 1842911 1843729 + [L] Transposase and inactivated derivatives 955 cds-NP_707667.1 CDS COG0671 1843770 1844480 - [I] Membrane-associated phospholipid phosphatase cds-NP_707668.1 CDS COG2267 1844431 1846188 - [I] Lysophospholipase 956 cds-NP_707670.2 CDS COG0558 1847099 1847704 - [I] Phosphatidylglycerophosphate synthase 957 ydbD CDS NA 1847875 1850184 - NA 958 insB_35 CDS COG1662 1850298 1850801 + [L] Transposase and inactivated derivatives, IS1 family 959 ldhA CDS COG1052 1851238 1852227 - [CHR] Lactate dehydrogenase and related dehydrogenases 960 ydbH CDS ROG3879 1852435 1855074 + NA ynbE CDS ROG0130 1855071 1855256 + NA ydbL CDS COG3784 1855261 1855590 + [S] Uncharacterized protein conserved in bacteria 961 insA_32 CDS COG3677 1856042 1856317 + [L] Transposase and inactivated derivatives insB_36 CDS COG1662 1856344 1856739 + [L] Transposase and inactivated derivatives, IS1 family 962 cds-NP_707679.1 CDS COG3042 1856872 1857234 - [R] Putative hemolysin 963 ydbK CDS COG0674 1857411 1860935 + [C] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, 964 ynaF CDS COG0589 1862500 1863006 + [T] Universal stress protein UspA and related 965 ydaO CDS COG0037 1863182 1864117 + [D] Predicted ATPase of the PP-loop superfamily 966 dbpA CDS COG0513 1864246 1865613 - [LKJ] Superfamily II DNA and RNA helicases 967 zntB CDS COG0598 1866091 1867074 - [P] Mg2+ and Co2+ transporters 968 cds-NP_707686.1 CDS NA 1869399 1870853 - NA 969 cds-NP_707687.1 CDS NA 1871358 1871546 + NA cds-NP_707688.1 CDS ROG0048 1871556 1872755 + NA 970 cds-NP_707689.3 CDS COG2207 1873663 1874478 + [K] AraC-type DNA-binding domain-containing proteins 971 cds-YP_008439256.1 CDS COG2978 1874808 1875011 + [H] Putative p-aminobenzoyl-glutamate transporter ogt CDS COG0350 1875022 1875537 + [L] Methylated DNA-protein cysteine methyltransferase 972 fnr CDS COG0664 1875732 1876484 + [T] cAMP-binding proteins - catabolite gene activator ydaA CDS COG0589 1876636 1877586 + [T] Universal stress protein UspA and related 973 cds-NP_707693.1 CDS COG2801 1878093 1878932 - [L] Transposase and inactivated derivatives cds-NP_707694.1 CDS COG2963 1878959 1879261 - [L] Transposase and inactivated derivatives 974 cds-NP_707695.1 CDS COG0668 1879389 1880420 + [M] Small-conductance mechanosensitive channel 975 cds-NP_707696.1 CDS COG4166 1880471 1882105 - [E] ABC-type oligopeptide transport system, periplasmic component 976 cds-NP_707697.1 CDS COG2963 1882952 1883254 + [L] Transposase and inactivated derivatives 977 cds-NP_707700.1 CDS COG2963 1884174 1884500 - [L] Transposase and inactivated derivatives 978 cds-NP_707701.1 CDS COG2801 1884585 1885403 + [L] Transposase and inactivated derivatives 979 cds-NP_707703.1 CDS NA 1887237 1887578 - NA 980 cds-NP_707704.1 CDS COG2372 1888467 1888841 - [R] Uncharacterized protein, homolog of Cu resistance 981 holE CDS NA 1888980 1889210 + NA 982 cds-NP_707706.2 CDS COG0847 1889992 1890654 + [L] DNA polymerase III, epsilon subunit and 983 ptrB CDS COG1770 1890651 1892711 - [E] Protease II 984 yebE CDS COG2979 1892921 1893580 - [S] Uncharacterized protein conserved in bacteria 985 yebF CDS NA 1893907 1894263 - NA 986 purT CDS COG0027 1894754 1895932 + [F] Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 987 eda CDS COG0800 1895988 1896629 - [G] 2-keto-3-deoxy-6-phosphogluconate aldolase edd CDS COG0129 1896666 1898477 - [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase zwf CDS COG0364 1898712 1900187 - [G] Glucose-6-phosphate 1-dehydrogenase 988 cds-YP_008439257.1 CDS NA 1900353 1900502 - NA 989 yebK CDS COG1737 1900525 1901394 + [K] Transcriptional regulators 990 pykA CDS COG0469 1901522 1902964 + [G] Pyruvate kinase 991 msbB CDS COG1560 1903095 1904066 - [M] Lauroyl/myristoyl acyltransferase 992 yebA CDS COG0739 1904186 1905508 - [M] Membrane proteins related to metalloendopeptidases yebL CDS COG4531 1905524 1906582 - [P] ABC-type Zn2+ transport system, periplasmic component/surface 993 znuC CDS COG1121 1906535 1907290 + [P] ABC-type Mn/Zn transport systems, ATPase component 994 ruvB CDS COG2255 1908218 1909228 - [L] Holliday junction resolvasome, helicase subunit ruvA CDS COG0632 1909237 1909848 - [L] Holliday junction resolvasome, DNA-binding subunit 995 cds-NP_707722.3 CDS ROG3369 1910052 1910723 + NA 996 ruvC CDS COG0817 1910725 1911246 - [L] Holliday junction resolvasome, endonuclease subunit 997 ntpA CDS COG1051 1912051 1912533 - [F] ADP-ribose pyrophosphatase 998 aspS CDS COG0173 1912621 1914393 - [J] Aspartyl-tRNA synthetase 999 cds-NP_707726.1 CDS COG3547 1915149 1916345 + [L] Transposase and inactivated derivatives 1000 cds-NP_707727.1 CDS ROG5741 1917074 1917322 + NA 1001 ipaH_4 CDS COG4886 1917922 1919673 + [S] Leucine-rich repeat (LRR) protein 1002 cds-NP_707729.1 CDS NA 1919853 1920476 - NA 1003 cds-NP_707731.1 CDS COG3637 1921902 1922501 - [M] Opacity protein and related surface antigens 1004 cds-NP_707732.1 CDS COG4733 1922569 1926048 - [S] Phage-related protein, tail component cds-NP_707733.2 CDS COG4723 1926109 1926651 - [S] Phage-related protein, tail component cds-NP_707734.2 CDS COG1310 1926648 1927247 - [R] Predicted metal-dependent protease of the PAD1/JAB1 cds-NP_707735.1 CDS COG4672 1927396 1928094 - [S] Phage-related protein cds-NP_707736.1 CDS COG4718 1928094 1928423 - [S] Phage-related protein cds-NP_707737.1 CDS COG5281 1928423 1931464 - [S] Phage-related minor tail protein cds-NP_707738.2 CDS NA 1931436 1931711 - NA 1005 cds-NP_707739.2 CDS NA 1931774 1932160 - NA cds-NP_707740.2 CDS COG5492 1932219 1932959 - [N] Bacterial surface proteins containing Ig-like domains cds-NP_707741.1 CDS NA 1932970 1933371 - NA cds-NP_707742.1 CDS ROG6459 1933368 1933958 - NA cds-NP_707743.1 CDS NA 1933945 1934316 - NA cds-NP_707744.1 CDS COG3644 1934328 1934729 - [S] Uncharacterized protein conserved in bacteria 1006 cds-NP_707745.1 CDS COG3547 1934993 1936189 + [L] Transposase and inactivated derivatives 1007 rna-SF4470 tRNA NA 1936889 1936963 - NA rna-SF4471 tRNA NA 1936967 1937042 - NA rna-SF4472 tRNA NA 1937045 1937121 - NA rna-SF4473 tRNA NA 1937123 1937198 - NA 1008 cds-NP_707746.2 CDS NA 1937375 1938064 - NA cds-NP_707747.1 CDS COG4570 1938061 1938420 - [L] Holliday junction resolvase 1009 cds-NP_707748.1 CDS COG2963 1938624 1938926 + [L] Transposase and inactivated derivatives cds-NP_707749.1 CDS COG2801 1938962 1939780 + [L] Transposase and inactivated derivatives 1010 insB_37 CDS COG1662 1940293 1940796 - [L] Transposase and inactivated derivatives, IS1 family 1011 cds-NP_707752.1 CDS COG2268 1941076 1941903 + [S] Uncharacterized protein conserved in bacteria cds-NP_707753.2 CDS ROG3242 1941947 1942696 + NA cds-NP_707754.1 CDS COG0592 1942693 1943262 + [L] DNA polymerase sliding clamp subunit (PCNA 1012 cds-YP_008439258.1 CDS NA 1943386 1943628 + NA 1013 cds-NP_707755.1 CDS COG2801 1943959 1944798 - [L] Transposase and inactivated derivatives cds-NP_707756.1 CDS COG2963 1944825 1945163 - [L] Transposase and inactivated derivatives 1014 yecN CDS COG3788 1945760 1946155 + [R] Uncharacterized relative of glutathione S-transferase, MAPEG yecO CDS COG0500 1946196 1946939 + [QR] SAM-dependent methyltransferases yecP CDS COG0500 1946936 1947907 + [QR] SAM-dependent methyltransferases 1015 bisZ CDS COG0243 1948072 1950501 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing yecK CDS COG3005 1950526 1951626 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c 1016 cutC CDS COG3142 1952014 1952760 - [P] Uncharacterized protein involved in copper resistance yecM CDS COG3102 1952774 1953340 - [S] Uncharacterized protein conserved in bacteria 1017 argS CDS COG0018 1953556 1955289 + [J] Arginyl-tRNA synthetase 1018 yecT CDS COG3755 1955466 1955954 + [S] Uncharacterized protein conserved in bacteria 1019 cds-NP_707768.1 CDS COG2963 1957043 1957369 - [L] Transposase and inactivated derivatives flhE CDS NA 1957421 1957759 - NA 1020 flhB CDS COG1377 1959783 1960976 - [NU] Flagellar biosynthesis pathway, component FlhB 1021 cds-NP_707771.1 CDS COG2801 1961605 1962444 - [L] Transposase and inactivated derivatives cds-NP_707772.1 CDS COG2963 1962471 1962809 - [L] Transposase and inactivated derivatives 1022 cds-NP_707773.1 CDS NA 1962914 1963309 + NA 1023 cds-NP_707774.1 CDS COG2801 1963699 1964517 + [L] Transposase and inactivated derivatives 1024 cheZ CDS COG3143 1965021 1965665 - [NT] Chemotaxis protein cheY CDS COG0784 1965676 1966065 - [T] FOG: CheY-like receiver cheB CDS COG2201 1966080 1967129 - [NT] Chemotaxis response regulator containing a CheY-like cheR CDS COG1352 1967132 1967992 - [NT] Methylase of chemotaxis methyl-accepting proteins tap CDS COG0840 1968011 1969612 - [NT] Methyl-accepting chemotaxis protein tar CDS COG0840 1969658 1971319 - [NT] Methyl-accepting chemotaxis protein cheW CDS COG0835 1971464 1971967 - [NT] Chemotaxis signal transduction protein cheA CDS COG0643 1971988 1973952 - [NT] Chemotaxis protein histidine kinase and related motB CDS COG1360 1973957 1974883 - [N] Flagellar motor protein motA CDS COG1291 1974880 1975767 - [N] Flagellar motor component 1025 flhC CDS ROG0388 1975894 1976472 - NA 1026 insA_33 CDS COG3677 1976735 1977010 + [L] Transposase and inactivated derivatives insB_38 CDS COG1662 1977037 1977432 + [L] Transposase and inactivated derivatives, IS1 family 1027 otsB CDS COG1877 1977870 1978670 - [G] Trehalose-6-phosphatase 1028 araH CDS COG1172 1978837 1979826 - [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components araG CDS COG1129 1979838 1981352 - [G] ABC-type sugar transport system, ATPase component 1029 yecI CDS COG1528 1983208 1983711 + [P] Ferritin-like protein 1030 cds-YP_008439259.1 CDS NA 1983791 1984042 - NA 1031 cds-NP_707794.1 CDS NA 1984506 1984829 + NA 1032 ftn CDS COG1528 1985000 1985497 + [P] Ferritin-like protein 1033 yecH CDS ROG7097 1985534 1985773 - NA 1034 tyrP CDS COG0814 1985963 1987174 + [E] Amino acid permeases 1035 yecA CDS COG3318 1987236 1987901 - [R] Predicted metal-binding protein related to the 1036 rna-SF4474 tRNA NA 1988097 1988183 - NA rna-SF4475 tRNA NA 1988196 1988269 - NA rna-SF4476 tRNA NA 1988324 1988399 - NA 1037 pgsA CDS COG0558 1988551 1989099 - [I] Phosphatidylglycerophosphate synthase uvrC CDS COG0322 1989156 1990922 - [L] Nuclease subunit of the excinuclease complex uvrY CDS COG2197 1990985 1991641 - [TK] Response regulator containing a CheY-like receiver 1038 yecF CDS NA 1992100 1992324 + NA 1039 sdiA CDS COG2771 1992351 1992977 - [K] DNA-binding HTH domain-containing proteins 1040 yecC CDS COG1126 1993207 1993959 - [E] ABC-type polar amino acid transport system, yecS CDS COG0765 1993956 1994624 - [E] ABC-type amino acid transport system, permease yedO CDS COG2515 1994639 1995721 - [E] 1-aminocyclopropane-1-carboxylate deaminase cds-NP_707807.1 CDS COG0834 1995730 1996587 - [ET] ABC-type amino acid transport/signal transduction systems, fliZ CDS NA 1996618 1997205 - NA 1041 fliC CDS COG1344 1998099 1999751 - [N] Flagellin and related hook-associated proteins 1042 fliD CDS COG1345 2000017 2001423 + [N] Flagellar capping protein fliS CDS COG1516 2001448 2001858 + [NUO] Flagellin-specific chaperone FliS fliT CDS ROG0925 2001858 2002223 + NA 1043 amyA CDS NA 2002301 2003788 + NA 1044 yedD CDS NA 2003822 2004235 - NA 1045 yedE CDS COG2391 2004422 2005627 + [R] Predicted transporter component yedF CDS COG0425 2005624 2005857 + [O] Predicted redox protein, regulator of disulfide 1046 nmpC CDS COG3203 2008893 2009975 + [M] Outer membrane protein (porin) 1047 cds-NP_707820.1 CDS NA 2010525 2011262 - NA ybcL CDS COG1881 2011272 2011823 - [R] Phospholipid-binding protein 1048 emrE CDS COG2076 2011992 2012324 - [P] Membrane transporters of cations and cationic 1049 fliE CDS COG1677 2012669 2012983 - [NU] Flagellar hook-basal body protein 1050 fliG CDS COG1536 2014849 2015844 + [N] Flagellar motor switch protein fliH CDS COG1317 2015837 2016523 + [NU] Flagellar biosynthesis/type III secretory pathway protein fliI CDS COG1157 2016523 2017896 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase fliJ CDS COG2882 2017915 2018259 + [NUO] Flagellar biosynthesis chaperone fliK CDS COG3144 2018256 2019383 + [N] Flagellar hook-length control protein fliL CDS COG1580 2019488 2019952 + [N] Flagellar basal body-associated protein fliM CDS COG1868 2019957 2020961 + [N] Flagellar motor switch protein fliN CDS COG1886 2020958 2021371 + [NU] Flagellar motor switch/type III secretory pathway fliO CDS COG3190 2021434 2021739 + [N] Flagellar biogenesis protein fliP CDS COG1338 2021862 2022476 + [NU] Flagellar biosynthesis pathway, component FliP fliQ CDS COG1987 2022486 2022755 + [NU] Flagellar biosynthesis pathway, component FliQ fliR CDS COG1684 2022764 2023549 + [NU] Flagellar biosynthesis pathway, component FliR 1051 rcsA CDS NA 2023834 2024457 + NA 1052 dsrB CDS NA 2024501 2024689 - NA 1053 cds-NP_707838.2 CDS NA 2024852 2025079 + NA 1054 yedQ CDS COG2199 2026189 2027673 - [T] FOG: GGDEF domain 1055 cds-NP_707840.1 CDS COG5475 2028054 2028236 - [S] Uncharacterized small protein yedI CDS COG2354 2028315 2029232 - [S] Uncharacterized protein conserved in bacteria 1056 yedA CDS COG0697 2029405 2030325 + [GER] Permeases of the drug/metabolite transporter (DMT) 1057 vsr CDS COG3727 2030314 2030784 - [L] DNA G:T-mismatch repair endonuclease dcm CDS COG0270 2030765 2032183 - [L] Site-specific DNA methylase 1058 cds-NP_707845.1 CDS COG2801 2033088 2033900 - [L] Transposase and inactivated derivatives cds-NP_707846.1 CDS COG2963 2033957 2034241 - [L] Transposase and inactivated derivatives 1059 cds-NP_707847.1 CDS COG3203 2034262 2035110 + [M] Outer membrane protein (porin) 1060 cds-NP_707848.1 CDS COG2801 2035081 2035986 - [L] Transposase and inactivated derivatives cds-NP_707849.3 CDS COG2963 2035944 2036354 - [L] Transposase and inactivated derivatives 1061 insA_34 CDS COG3677 2037210 2037485 + [L] Transposase and inactivated derivatives insB_39 CDS COG1662 2037512 2037907 + [L] Transposase and inactivated derivatives, IS1 family yedU CDS COG0693 2037953 2038804 + [R] Putative intracellular protease/amidase 1062 yedV CDS COG2205 2038912 2040270 - [T] Osmosensitive K+ channel histidine kinase yedW CDS COG0745 2040270 2040941 - [TK] Response regulators consisting of a CheY-like 1063 cds-NP_707855.1 CDS COG2351 2041074 2041487 + [R] Transthyretin-like protein 1064 cds-NP_707856.1 CDS COG2717 2042601 2043236 + [S] Predicted membrane protein 1065 cds-NP_707857.1 CDS COG3443 2043494 2044144 + [R] Predicted periplasmic or secreted protein 1066 cds-YP_008439260.1 CDS NA 2045222 2045491 - NA 1067 cds-NP_707858.1 CDS COG0500 2045548 2046216 + [QR] SAM-dependent methyltransferases 1068 cds-NP_707859.1 CDS ROG0762 2047252 2048460 + NA 1069 cds-NP_707860.2 CDS NA 2049693 2050307 - NA cds-NP_707861.2 CDS COG2801 2050213 2051031 - [L] Transposase and inactivated derivatives 1070 insB_40 CDS COG1662 2051322 2051825 + [L] Transposase and inactivated derivatives, IS1 family 1071 cds-NP_707863.1 CDS NA 2051918 2052400 - NA 1072 cds-NP_707864.1 CDS COG5283 2052468 2054417 - [S] Phage-related tail protein 1073 cds-NP_707865.1 CDS NA 2054502 2054837 - NA cds-NP_707866.1 CDS ROG7545 2054837 2055193 - NA cds-NP_707867.1 CDS COG4386 2055193 2056689 - [R] Mu-like prophage tail sheath protein gpL 1074 cds-NP_707869.1 CDS COG2801 2057241 2058059 - [L] Transposase and inactivated derivatives cds-NP_707870.1 CDS COG2963 2058095 2058397 - [L] Transposase and inactivated derivatives 1075 cds-NP_707872.1 CDS COG3436 2059296 2059643 - [L] Transposase and inactivated derivatives cds-NP_707873.1 CDS COG2963 2059640 2060314 - [L] Transposase and inactivated derivatives 1076 cds-NP_707874.1 CDS COG3402 2060413 2060628 - [S] Uncharacterized conserved protein 1077 rna-SF4477 tRNA NA 2060921 2060995 - NA rna-SF4478 tRNA NA 2060999 2061074 - NA rna-SF4479 tRNA NA 2061077 2061153 - NA rna-SF4480 tRNA NA 2061155 2061230 - NA 1078 cds-NP_707875.2 CDS ROG5054 2061429 2062112 - NA cds-NP_707876.1 CDS COG4570 2062109 2062474 - [L] Holliday junction resolvase cds-NP_707877.2 CDS ROG3846 2062475 2063461 - NA 1079 cds-NP_707878.1 CDS NA 2063535 2063813 - NA 1080 cds-YP_008439261.1 CDS NA 2063616 2063939 + NA 1081 cds-YP_008439262.1 CDS NA 2063981 2064193 - NA 1082 cds-YP_008439263.1 CDS NA 2064396 2064614 - NA 1083 cds-NP_707879.2 CDS NA 2064788 2065123 - NA 1084 rna-SF4481 tRNA NA 2066449 2066538 - NA 1085 cds-NP_707881.1 CDS COG3228 2066593 2067429 + [S] Uncharacterized protein conserved in bacteria 1086 rna-SF4482 tRNA NA 2067530 2067605 + NA 1087 cds-NP_707884.1 CDS COG2801 2069136 2069975 - [L] Transposase and inactivated derivatives cds-NP_707885.1 CDS COG2963 2070002 2070340 - [L] Transposase and inactivated derivatives 1088 cds-NP_707886.1 CDS COG2963 2070931 2071233 + [L] Transposase and inactivated derivatives cds-NP_707887.1 CDS COG2801 2071269 2072060 + [L] Transposase and inactivated derivatives 1089 amn CDS COG0775 2072412 2073866 + [F] Nucleoside phosphorylase 1090 cds-NP_707889.1 CDS COG0217 2074209 2074925 + [S] Uncharacterized conserved protein 1091 rna-SF4483 tRNA NA 2075381 2075456 - NA 1092 rna-SF4484 tRNA NA 2077189 2077264 + NA 1093 cbl CDS COG0583 2077302 2078252 - [K] Transcriptional regulator nac CDS COG0583 2078354 2079271 - [K] Transcriptional regulator 1094 rna-SF4485 tRNA NA 2079599 2079675 + NA 1095 erfK CDS COG1376 2079731 2080666 - [S] Uncharacterized protein conserved in bacteria cobT CDS COG2038 2080728 2081807 - [H] NaMN:DMB phosphoribosyltransferase cobS CDS COG0368 2081819 2082562 - [H] Cobalamin-5-phosphate synthase cobU CDS COG2087 2082559 2083068 - [H] Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase cds-NP_707896.1 CDS COG2801 2083080 2083898 - [L] Transposase and inactivated derivatives cds-NP_707897.1 CDS COG2963 2083934 2084236 - [L] Transposase and inactivated derivatives 1096 cds-NP_707898.1 CDS COG2963 2084479 2084805 + [L] Transposase and inactivated derivatives cds-NP_707899.1 CDS COG2801 2085020 2085688 + [L] Transposase and inactivated derivatives 1097 cds-NP_707900.1 CDS NA 2085910 2086392 + NA 1098 yeeX CDS COG2926 2086551 2086946 - [S] Uncharacterized protein conserved in bacteria 1099 cds-NP_707902.1 CDS COG2801 2087163 2087783 + [L] Transposase and inactivated derivatives 1100 sbcB CDS COG2925 2088328 2089752 + [L] Exonuclease I 1101 yeeD CDS COG0425 2089795 2090022 - [O] Predicted redox protein, regulator of disulfide yeeE CDS COG2391 2090036 2091094 - [R] Predicted transporter component 1102 yeeF CDS COG0531 2091273 2092631 - [E] Amino acid transporters 1103 yeeY CDS COG0583 2092844 2093827 - [K] Transcriptional regulator cds-NP_707908.1 CDS COG0451 2093873 2094697 - [MG] Nucleoside-diphosphate-sugar epimerases 1104 yoeB CDS COG4115 2094780 2095034 - [S] Uncharacterized protein conserved in bacteria insB_41 CDS COG1662 2095056 2095451 - [L] Transposase and inactivated derivatives, IS1 family insA_35 CDS COG3677 2095478 2095753 - [L] Transposase and inactivated derivatives yefM CDS COG2161 2095787 2096059 - [D] Antitoxin of toxin-antitoxin stability system 1105 hisG CDS COG0040 2096529 2097428 + [E] ATP phosphoribosyltransferase hisD CDS COG0141 2097434 2098738 + [E] Histidinol dehydrogenase hisC CDS COG0079 2098735 2099805 + [E] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase hisB CDS COG0131 2099805 2100872 + [E] Imidazoleglycerol-phosphate dehydratase hisH CDS COG0118 2100872 2101462 + [E] Glutamine amidotransferase hisA CDS COG0106 2101462 2102199 + [E] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase hisF CDS COG0107 2102181 2102957 + [E] Imidazoleglycerol-phosphate synthase hisI CDS COG0139 2102951 2103562 + [E] Phosphoribosyl-AMP cyclohydrolase 1106 wzzB CDS COG3765 2103748 2104761 - [M] Chain length determinant protein 1107 gnd CDS COG0362 2106241 2107647 - [G] 6-phosphogluconate dehydrogenase 1108 cds-NP_707924.1 CDS ROG5718 2108112 2108663 - NA 1109 cds-NP_707925.1 CDS NA 2108764 2109363 - NA 1110 rfbI CDS COG2246 2110581 2110955 - [S] Predicted membrane protein rfc CDS NA 2110959 2112107 - NA rfbG CDS NA 2112127 2112996 - NA rfbF CDS COG1216 2113025 2113915 - [R] Predicted glycosyltransferases rfbE CDS COG2244 2113945 2115201 - [R] Membrane protein involved in the export rfbC CDS COG1898 2115217 2115762 - [M] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes rfbA CDS COG1209 2115767 2116645 - [M] dTDP-glucose pyrophosphorylase rfbD CDS COG1091 2116704 2117603 - [M] dTDP-4-dehydrorhamnose reductase rfbB CDS COG1088 2117603 2118688 - [M] dTDP-D-glucose 4,6-dehydratase galF CDS COG1210 2119061 2119954 - [M] UDP-glucose pyrophosphorylase 1111 wcaM CDS NA 2120129 2121523 - NA wcaL CDS COG0438 2121534 2122754 - [M] Glycosyltransferase wcaK CDS COG2327 2122751 2124031 - [S] Uncharacterized conserved protein 1112 wzxC CDS COG2244 2124211 2125689 - [R] Membrane protein involved in the export wcaJ CDS COG2148 2125691 2127085 - [M] Sugar transferases involved in lipopolysaccharide synthesis cpsG CDS COG1109 2127140 2128510 - [G] Phosphomannomutase cpsB CDS COG0836 2128703 2130139 - [M] Mannose-1-phosphate guanylyltransferase wcaI CDS COG0438 2130142 2131365 - [M] Glycosyltransferase wcaH CDS COG1051 2131362 2131841 - [F] ADP-ribose pyrophosphatase wcaG CDS COG0451 2131841 2132809 - [MG] Nucleoside-diphosphate-sugar epimerases gmd CDS COG1089 2132812 2133933 - [M] GDP-D-mannose dehydratase wcaF CDS COG0110 2133959 2134507 - [R] Acetyltransferase (isoleucine patch superfamily) 1113 insA_36 CDS COG3677 2134703 2134978 + [L] Transposase and inactivated derivatives insB_42 CDS COG1662 2135005 2135400 + [L] Transposase and inactivated derivatives, IS1 family 1114 wcaC CDS COG0438 2136212 2137429 - [M] Glycosyltransferase wcaB CDS COG1045 2137426 2137914 - [E] Serine acetyltransferase 1115 cds-NP_707954.3 CDS COG3206 2138849 2141047 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis wzb CDS COG0394 2141014 2141457 - [T] Protein-tyrosine-phosphatase wza CDS COG1596 2141463 2142602 - [M] Periplasmic protein involved in polysaccharide export 1116 yegH CDS COG0861 2143261 2144844 + [P] Membrane protein TerC, possibly involved in 1117 asmA CDS COG2982 2145296 2147149 - [M] Uncharacterized protein involved in outer membrane dcd CDS COG0717 2147171 2147752 - [F] Deoxycytidine deaminase udk CDS COG0572 2147844 2148485 - [F] Uridine kinase 1118 cds-NP_707961.1 CDS COG3547 2149247 2150443 - [L] Transposase and inactivated derivatives 1119 alkA CDS COG0122 2153672 2154520 - [L] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 1120 cds-NP_707964.1 CDS ROG2884 2157955 2158716 - NA cds-NP_707965.2 CDS COG4245 2158713 2159372 - [R] Uncharacterized protein encoded in toxicity protection 1121 cds-NP_707966.1 CDS COG3547 2159806 2161002 + [L] Transposase and inactivated derivatives cds-NP_707967.1 CDS COG0845 2161004 2162056 + [M] Membrane-fusion protein 1122 yegO CDS COG0841 2165179 2168244 + [V] Cation/multidrug efflux pump yegB CDS COG0477 2168245 2169660 + [GEPR] Permeases of the major facilitator superfamily baeS CDS COG0642 2169657 2171060 + [T] Signal transduction histidine kinase baeR CDS COG0745 2171057 2171779 + [TK] Response regulators consisting of a CheY-like 1123 cds-NP_707972.1 CDS COG3422 2171931 2172302 + [S] Uncharacterized conserved protein 1124 yegQ CDS COG0826 2172449 2173810 + [O] Collagenase and related proteases 1125 cds-NP_707974.1 CDS COG5510 2174152 2174529 - [S] Predicted small secreted protein 1126 cds-NP_707975.1 CDS COG1597 2174875 2175774 + [IR] Sphingosine kinase and enzymes related to 1127 gatR CDS COG1349 2175856 2176635 - [KG] Transcriptional regulators of sugar metabolism gatD CDS COG1063 2176735 2177775 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases insB_43 CDS COG1662 2177808 2178203 - [L] Transposase and inactivated derivatives, IS1 family insA_37 CDS COG3677 2178230 2178505 - [L] Transposase and inactivated derivatives 1128 gatC CDS COG3775 2178600 2179955 - [G] Phosphotransferase system, galactitol-specific IIC component gatB CDS COG3414 2179959 2180243 - [G] Phosphotransferase system, galactitol-specific IIB component gatA CDS COG1762 2180274 2180726 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) gatZ CDS COG4573 2180736 2181998 - [G] Predicted tagatose 6-phosphate kinase gatY CDS COG0191 2182027 2182881 - [G] Fructose/tagatose bisphosphate aldolase cds-NP_707985.1 CDS COG1830 2183189 2184241 - [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 1129 cds-NP_707986.1 CDS COG0524 2185281 2186246 + [G] Sugar kinases, ribokinase family 1130 cds-NP_707987.1 CDS ROG0762 2186691 2187899 + NA 1131 yegX CDS COG3757 2188352 2189173 - [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 1132 thiD CDS COG0351 2189238 2190038 - [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase thiM CDS COG2145 2190035 2190823 - [H] Hydroxyethylthiazole kinase, sugar kinase family 1133 yohL CDS COG1937 2191046 2191318 - [S] Uncharacterized protein conserved in bacteria 1134 yohN CDS COG5455 2192489 2192827 + [S] Predicted integral membrane protein 1135 yehA CDS NA 2193127 2193942 - NA yehB CDS COG3188 2193958 2196438 - [NU] P pilus assembly protein, porin PapC 1136 insB_44 CDS COG1662 2197136 2197639 + [L] Transposase and inactivated derivatives, IS1 family 1137 yehD CDS COG3539 2197985 2198509 - [NU] P pilus assembly protein, pilin FimA 1138 insB_45 CDS COG1662 2198785 2199180 - [L] Transposase and inactivated derivatives, IS1 family insA_38 CDS COG3677 2199207 2199482 - [L] Transposase and inactivated derivatives cds-YP_008439264.1 CDS COG3539 2199579 2199860 - [NU] P pilus assembly protein, pilin FimA 1139 mrp CDS COG0489 2200122 2201231 - [D] ATPases involved in chromosome partitioning 1140 metG CDS COG0143 2201363 2203396 + [J] Methionyl-tRNA synthetase 1141 cds-NP_708002.1 CDS COG2963 2203792 2204094 + [L] Transposase and inactivated derivatives cds-NP_708003.1 CDS COG2801 2204130 2204948 + [L] Transposase and inactivated derivatives 1142 insA_39 CDS COG3677 2205606 2205881 + [L] Transposase and inactivated derivatives insB_46 CDS COG1662 2205908 2206303 + [L] Transposase and inactivated derivatives, IS1 family 1143 cds-NP_708006.1 CDS NA 2213090 2213497 + NA 1144 yehL CDS COG1401 2213973 2215127 + [V] GTPase subunit of restriction endonuclease yehM CDS ROG0128 2215138 2217417 + NA yehP CDS ROG0128 2217410 2218546 + NA yehQ CDS NA 2218543 2220546 + NA 1145 insB_47 CDS COG1662 2220679 2221152 - [L] Transposase and inactivated derivatives, IS1 family 1146 yehR CDS COG4808 2221437 2221898 + [S] Uncharacterized protein conserved in bacteria 1147 insB_48 CDS COG1662 2222119 2222514 - [L] Transposase and inactivated derivatives, IS1 family insA_40 CDS COG3677 2222541 2222816 - [L] Transposase and inactivated derivatives yehS CDS COG4807 2222850 2223242 - [S] Uncharacterized protein conserved in bacteria yehT CDS COG3279 2223232 2223951 - [KT] Response regulator of the LytR/AlgR family yehU CDS COG3275 2223948 2225633 - [T] Putative regulator of cell autolysis 1148 cds-NP_708018.1 CDS ROG5741 2227584 2227832 + NA 1149 cds-YP_008439265.1 CDS NA 2227948 2228217 - NA 1150 cds-NP_708019.1 CDS COG0500 2228274 2228942 + [QR] SAM-dependent methyltransferases 1151 cds-NP_708020.1 CDS ROG0762 2229978 2231186 + NA 1152 cds-NP_708021.3 CDS NA 2232419 2232928 - NA cds-NP_708022.2 CDS NA 2232973 2234262 - NA cds-NP_708023.1 CDS NA 2234286 2234774 - NA 1153 insA_41 CDS COG3677 2235289 2235564 + [L] Transposase and inactivated derivatives insB_49 CDS COG1662 2235591 2235986 + [L] Transposase and inactivated derivatives, IS1 family 1154 cds-NP_708027.1 CDS COG2963 2236685 2237011 + [L] Transposase and inactivated derivatives 1155 yehW CDS COG1174 2238540 2239271 - [E] ABC-type proline/glycine betaine transport systems, permease yehX CDS COG1125 2239276 2240202 - [E] ABC-type proline/glycine betaine transport systems, ATPase yehY CDS COG1174 2240195 2241352 - [E] ABC-type proline/glycine betaine transport systems, permease yehZ CDS COG1732 2241359 2242276 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an 1156 bglX CDS COG1472 2242528 2244825 - [G] Beta-glucosidase-related glycosidases 1157 dld CDS COG0277 2245021 2246736 + [C] FAD/FMN-containing dehydrogenases 1158 pbpG CDS COG1686 2246774 2247706 - [M] D-alanyl-D-alanine carboxypeptidase 1159 yohC CDS ROG0339 2247880 2248467 - NA 1160 yohD CDS COG0586 2248601 2249215 + [S] Uncharacterized membrane-associated protein 1161 yohI CDS COG0042 2252260 2253207 - [J] tRNA-dihydrouridine synthase 1162 yohJ CDS COG1380 2253446 2253844 + [R] Putative effector of murein hydrolase LrgA yohK CDS COG1346 2253841 2254536 + [M] Putative effector of murein hydrolase 1163 cdd CDS COG0295 2254666 2255550 + [F] Cytidine deaminase 1164 sanA CDS COG2949 2255700 2256419 + [S] Uncharacterized membrane protein cds-NP_708045.1 CDS NA 2256422 2256661 + NA 1165 cds-NP_708046.1 CDS COG0493 2256855 2258093 + [ER] NADPH-dependent glutamate synthase beta chain and 1166 mglC CDS COG4211 2259302 2260312 - [G] ABC-type glucose/galactose transport system, permease component mglA CDS COG1129 2260328 2261848 - [G] ABC-type sugar transport system, ATPase component mglB CDS COG1879 2261909 2262907 - [G] ABC-type sugar transport system, periplasmic component galS CDS COG1609 2263187 2264227 - [K] Transcriptional regulators 1167 yeiB CDS COG2311 2264369 2265445 - [S] Predicted membrane protein folE CDS COG0302 2265462 2266130 - [H] GTP cyclohydrolase I 1168 lysP CDS COG0833 2269541 2271010 - [E] Amino acid transporters 1169 yeiE CDS COG0583 2271216 2272097 - [K] Transcriptional regulator 1170 yeiH CDS COG2855 2272196 2273245 + [S] Predicted membrane protein 1171 nfo CDS COG0648 2273319 2274176 + [L] Endonuclease IV yeiI CDS COG0524 2274179 2275267 + [G] Sugar kinases, ribokinase family 1172 yeiJ CDS COG1972 2275323 2276573 - [F] Nucleoside permease rihB CDS COG1957 2276673 2277614 - [F] Inosine-uridine nucleoside N-ribohydrolase 1173 yeiL CDS COG0664 2277784 2278362 + [T] cAMP-binding proteins - catabolite gene activator 1174 yeiM CDS COG1972 2278510 2279760 - [F] Nucleoside permease yeiN CDS COG2313 2279854 2280792 - [Q] Uncharacterized enzyme involved in pigment biosynthesis yeiC CDS COG0524 2280780 2281721 - [G] Sugar kinases, ribokinase family 1175 fruA CDS COG1299 2282145 2283836 - [G] Phosphotransferase system, fructose-specific IIC component fruK CDS COG1105 2283853 2284791 - [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase fruB CDS COG4668 2284791 2285921 - [G] Mannitol/fructose-specific phosphotransferase system, IIA domain 1176 yeiO CDS COG3619 2286289 2287467 + [S] Predicted membrane protein 1177 insB_50 CDS COG1662 2287461 2287856 - [L] Transposase and inactivated derivatives, IS1 family insA_42 CDS COG3677 2287883 2288158 - [L] Transposase and inactivated derivatives 1178 yeiP CDS COG0231 2288652 2289224 + [J] Translation elongation factor P (EF-P)/translation initiation 1179 yeiQ CDS COG0246 2289447 2290913 + [G] Mannitol-1-phosphate/altronate dehydrogenases 1180 yeiR CDS COG0523 2291031 2292017 + [R] Putative GTPases (G3E family) cds-NP_708073.2 CDS ROG3410 2292056 2292769 + NA 1181 spr CDS COG0791 2293181 2293747 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 1182 rtn CDS COG2200 2293928 2295484 + [T] FOG: EAL domain 1183 yejA CDS COG0747 2295566 2297380 + [E] ABC-type dipeptide transport system, periplasmic component yejB CDS COG4174 2297381 2298475 + [R] ABC-type uncharacterized transport system, permease component yejE CDS COG4239 2298475 2299500 + [R] ABC-type uncharacterized transport system, permease component yejF CDS COG4172 2299502 2301091 + [R] ABC-type uncharacterized transport system, duplicated ATPase 1184 yejG CDS NA 2301095 2301439 - NA 1185 bcr CDS COG2814 2301772 2302962 - [G] Arabinose efflux permease rsuA CDS COG1187 2302990 2303685 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 1186 yejH CDS COG1061 2303835 2305595 + [KL] DNA or RNA helicases of superfamily 1187 rplY CDS COG1825 2305720 2306004 + [J] Ribosomal protein L25 (general stress protein 1188 yejK CDS COG3081 2306143 2307150 - [R] Nucleoid-associated protein 1189 yejL CDS COG3082 2307332 2307559 + [S] Uncharacterized protein conserved in bacteria yejM CDS COG3083 2307579 2309339 + [R] Predicted hydrolase of alkaline phosphatase superfamily 1190 rna-SF4486 tRNA NA 2309414 2309491 + NA 1191 yejO CDS COG3468 2309589 2312099 - [MU] Type V secretory pathway, adhesin AidA 1192 narP CDS COG2197 2312500 2313147 + [TK] Response regulator containing a CheY-like receiver 1193 ccmH CDS COG3088 2313358 2314410 - [O] Uncharacterized protein involved in biosynthesis of dsbE CDS COG0526 2314407 2314964 - [OC] Thiol-disulfide isomerase and thioredoxins ccmF CDS COG1138 2314961 2316904 - [O] Cytochrome c biogenesis factor ccmE CDS COG2332 2316901 2317380 - [O] Cytochrome c-type biogenesis protein CcmE ccmD CDS COG3114 2317377 2317586 - [U] Heme exporter protein D ccmC CDS COG0755 2317583 2318320 - [O] ABC-type transport system involved in cytochrome ccmB CDS COG2386 2318362 2319024 - [O] ABC-type transport system involved in cytochrome ccmA CDS COG4133 2319021 2319644 - [O] ABC-type transport system involved in cytochrome napC CDS COG3005 2319657 2320259 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c napB CDS COG3043 2320269 2320718 - [C] Nitrate reductase cytochrome c-type subunit napH CDS COG0348 2320715 2321578 - [C] Polyferredoxin napG CDS COG1145 2321565 2322260 - [C] Ferredoxin napA CDS COG0243 2322267 2324753 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing napD CDS COG3062 2324750 2325013 - [P] Uncharacterized protein involved in formation of napF CDS COG1145 2325003 2325497 - [C] Ferredoxin 1194 eco CDS COG4574 2325905 2326393 + [R] Serine protease inhibitor ecotin 1195 yojI CDS COG4615 2328357 2330000 - [QP] ABC-type siderophore export system, fused ATPase alkB CDS COG3145 2330076 2330726 - [L] Alkylated DNA repair protein ada CDS COG2169 2330726 2331790 - [F] Adenosine deaminase 1196 yojL CDS COG1477 2331864 2332919 - [H] Membrane-associated lipoprotein involved in thiamine biosynthesis 1197 ompC CDS COG3203 2333031 2334152 - [M] Outer membrane protein (porin) 1198 yojN CDS COG2198 2334890 2337562 + [T] FOG: HPt domain rcsB CDS COG2197 2337579 2338229 + [TK] Response regulator containing a CheY-like receiver 1199 rcsC CDS COG0642 2338429 2341278 - [T] Signal transduction histidine kinase 1200 cds-NP_708114.1 CDS COG4676 2341553 2342329 - [S] Uncharacterized protein conserved in bacteria cds-NP_708115.1 CDS COG5445 2342334 2343983 - [S] Predicted secreted protein 1201 cds-NP_708117.1 CDS COG2801 2346258 2347097 - [L] Transposase and inactivated derivatives cds-NP_708118.1 CDS COG2963 2347124 2347462 - [L] Transposase and inactivated derivatives 1202 cds-NP_708119.2 CDS COG3234 2349775 2350398 - [S] Uncharacterized protein conserved in bacteria 1203 gyrA CDS COG0188 2352232 2354859 - [L] Type IIA topoisomerase (DNA gyrase/topo II, 1204 ubiG CDS COG2227 2355006 2355728 + [H] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 1205 cds-NP_708123.3 CDS COG2801 2359908 2360747 + [L] Transposase and inactivated derivatives 1206 nrdA CDS COG0209 2361618 2363903 + [F] Ribonucleotide reductase, alpha subunit nrdB CDS COG0208 2364098 2365267 + [F] Ribonucleotide reductase, beta subunit yfaE CDS COG0633 2365267 2365521 + [C] Ferredoxin 1207 inaA CDS ROG4187 2365575 2366225 - NA 1208 yfaH CDS NA 2366440 2366646 + NA 1209 glpQ CDS COG0584 2366688 2367764 - [C] Glycerophosphoryl diester phosphodiesterase glpT CDS COG2271 2367769 2369127 - [G] Sugar phosphate permease 1210 glpA CDS COG0578 2369400 2371028 + [C] Glycerol-3-phosphate dehydrogenase glpB CDS COG3075 2371018 2372277 + [E] Anaerobic glycerol-3-phosphate dehydrogenase glpC CDS COG0247 2372274 2373464 + [C] Fe-S oxidoreductase 1211 yfaD CDS COG5464 2373657 2374607 + [S] Uncharacterized conserved protein 1212 cds-NP_708135.1 CDS COG1058 2375173 2376375 - [R] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis 1213 cds-NP_708136.2 CDS ROG1990 2376462 2377004 - NA 1214 yfaO CDS COG1051 2377199 2377708 + [F] ADP-ribose pyrophosphatase 1215 ais CDS ROG3466 2377747 2378325 - NA 1216 cds-NP_708139.4 CDS COG0399 2378690 2379796 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved cds-NP_708140.1 CDS COG0463 2379800 2380768 + [M] Glycosyltransferases involved in cell wall biogenesis 1217 cds-NP_708142.1 CDS COG0726 2382746 2383636 + [G] Predicted xylanase/chitin deacetylase arnT CDS COG1807 2383636 2385288 + [M] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of 1218 cds-NP_708144.4 CDS NA 2385620 2386006 + NA 1219 pmrD CDS NA 2386000 2386272 - NA 1220 menE CDS COG0318 2386377 2387732 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II menC CDS COG1441 2387729 2388691 - [H] O-succinylbenzoate synthase menB CDS COG0447 2388691 2389548 - [H] Dihydroxynaphthoic acid synthase yfbB CDS COG0596 2389563 2390321 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase menD CDS COG1165 2390318 2391988 - [H] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase menF CDS COG1169 2392077 2393147 - [HQ] Isochorismate synthase 1221 elaB CDS COG4575 2393451 2393756 - [S] Uncharacterized conserved protein elaA CDS COG2153 2393811 2394272 - [R] Predicted acyltransferase 1222 elaC CDS COG1234 2394319 2395254 + [R] Metal-dependent hydrolases of the beta-lactamase superfamily 1223 insA_43 CDS COG3677 2395690 2395965 + [L] Transposase and inactivated derivatives insB_51 CDS COG1662 2395992 2396387 + [L] Transposase and inactivated derivatives, IS1 family 1224 yfbM CDS ROG5086 2397770 2398093 + NA 1225 nuoN CDS COG1007 2398160 2399437 - [C] NADH:ubiquinone oxidoreductase subunit 2 (chain N) nuoM CDS COG1008 2399624 2401153 - [C] NADH:ubiquinone oxidoreductase subunit 4 (chain M) nuoL CDS COG1009 2401317 2403158 - [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit nuoK CDS COG0713 2403155 2403457 - [C] NADH:ubiquinone oxidoreductase subunit 11 or 4L nuoJ CDS COG0839 2403454 2404008 - [C] NADH:ubiquinone oxidoreductase subunit 6 (chain J) nuoI CDS COG1143 2404020 2404562 - [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 nuoH CDS COG1005 2404577 2405554 - [C] NADH:ubiquinone oxidoreductase subunit 1 (chain H) nuoG CDS COG1034 2405551 2408277 - [C] NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit nuoF CDS COG1894 2408330 2409667 - [C] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit nuoE CDS COG1905 2409664 2410164 - [C] NADH:ubiquinone oxidoreductase 24 kD subunit nuoC CDS COG0649 2410167 2411969 - [C] NADH:ubiquinone oxidoreductase 49 kD subunit 7 nuoB CDS COG0377 2412063 2412725 - [C] NADH:ubiquinone oxidoreductase 20 kD subunit and nuoA CDS COG0838 2412741 2413184 - [C] NADH:ubiquinone oxidoreductase subunit 3 (chain A) 1226 lrhA CDS COG0583 2413816 2414754 - [K] Transcriptional regulator 1227 cds-NP_708172.1 CDS COG0436 2415673 2416890 + [E] Aspartate/tyrosine/aromatic aminotransferase cds-NP_708173.1 CDS COG1896 2416974 2417573 + [R] Predicted hydrolases of HD superfamily 1228 yfbS CDS COG0471 2417632 2419464 - [P] Di- and tricarboxylate transporters 1229 yfbT CDS COG0637 2419551 2420201 - [R] Predicted phosphatase/phosphohexomutase cds-NP_708176.1 CDS COG3013 2420212 2420706 - [S] Uncharacterized conserved protein cds-NP_708177.1 CDS COG3092 2420789 2421244 - [S] Uncharacterized protein conserved in bacteria 1230 ackA CDS COG0282 2421582 2422784 + [C] Acetate kinase pta CDS COG0280 2422859 2425003 + [C] Phosphotransacetylase 1231 yfcC CDS COG1288 2425172 2426713 + [S] Predicted membrane protein 1232 cds-NP_708181.1 CDS COG1051 2426746 2427288 - [F] ADP-ribose pyrophosphatase yfcE CDS COG0622 2427346 2427897 - [R] Predicted phosphoesterase 1233 yfcF CDS COG0625 2427953 2428597 - [O] Glutathione S-transferase 1234 yfcG CDS COG0625 2428733 2429380 + [O] Glutathione S-transferase folX CDS COG1539 2429437 2429799 + [H] Dihydroneopterin aldolase cds-NP_708186.1 CDS COG1090 2429820 2430713 + [R] Predicted nucleoside-diphosphate sugar epimerase 1235 yfcI CDS COG5464 2430761 2431651 - [S] Uncharacterized conserved protein 1236 hisP CDS COG4598 2431848 2432621 - [E] ABC-type histidine transport system, ATPase component hisM CDS COG4160 2432629 2433345 - [E] ABC-type arginine/histidine transport system, permease component hisQ CDS COG4215 2433342 2434028 - [E] ABC-type arginine transport system, permease component hisJ CDS COG0834 2434105 2434899 - [ET] ABC-type amino acid transport/signal transduction systems, argT CDS COG0834 2435120 2435902 - [ET] ABC-type amino acid transport/signal transduction systems, 1237 ubiX CDS COG0163 2436168 2436737 - [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase purF CDS COG0034 2436832 2438349 - [F] Glutamine phosphoribosylpyrophosphate amidotransferase cvpA CDS COG1286 2438386 2438874 - [R] Uncharacterized membrane protein, required for colicin 1238 dedD CDS COG3147 2439133 2439768 - [S] Uncharacterized protein conserved in bacteria folC CDS COG0285 2439785 2441053 - [H] Folylpolyglutamate synthase accD CDS COG0777 2441123 2442037 - [I] Acetyl-CoA carboxylase beta subunit 1239 dedA CDS COG0586 2442193 2442852 - [S] Uncharacterized membrane-associated protein truA CDS COG0101 2442935 2443747 - [J] Pseudouridylate synthase usg CDS COG0136 2443747 2444760 - [E] Aspartate-semialdehyde dehydrogenase pdxB CDS COG0111 2444826 2445962 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1240 flk CDS NA 2446061 2447056 + NA 1241 cds-NP_708204.2 CDS NA 2447053 2448231 - NA 1242 fabB CDS COG0304 2448486 2449727 - [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase 1243 cds-NP_708206.3 CDS COG4121 2449826 2451892 + [S] Uncharacterized conserved protein 1244 cds-NP_708207.1 CDS ROG4992 2452013 2452291 - NA cds-NP_708208.1 CDS COG3101 2452325 2452873 - [S] Uncharacterized protein conserved in bacteria yfcA CDS COG0730 2452873 2453682 - [R] Predicted permeases mepA CDS COG3770 2453682 2454506 - [M] Murein endopeptidase aroC CDS COG0082 2454510 2455595 - [E] Chorismate synthase yfcB CDS COG2890 2455630 2456562 - [J] Methylase of polypeptide chain release factors 1245 cds-NP_708213.1 CDS COG2840 2456728 2457279 + [S] Uncharacterized protein conserved in bacteria 1246 cds-NP_708214.1 CDS NA 2457383 2458273 - NA cds-NP_708215.1 CDS COG3539 2458260 2458784 - [NU] P pilus assembly protein, pilin FimA cds-NP_708216.1 CDS COG3539 2458781 2459251 - [NU] P pilus assembly protein, pilin FimA cds-NP_708217.1 CDS COG3539 2459248 2459796 - [NU] P pilus assembly protein, pilin FimA 1247 cds-NP_708219.1 CDS COG3539 2463265 2463828 - [NU] P pilus assembly protein, pilin FimA 1248 insB_52 CDS COG1662 2464097 2464492 - [L] Transposase and inactivated derivatives, IS1 family insA_44 CDS COG3677 2464519 2464794 - [L] Transposase and inactivated derivatives 1249 cds-NP_708222.1 CDS COG2062 2465289 2465774 - [T] Phosphohistidine phosphatase SixA 1250 fadJ CDS COG1250 2465977 2468121 - [I] 3-hydroxyacyl-CoA dehydrogenase fadI CDS COG0183 2468121 2469431 - [I] Acetyl-CoA acetyltransferase 1251 cds-YP_008439266.1 CDS COG3691 2469611 2469919 - [S] Uncharacterized protein conserved in bacteria 1252 fadL CDS COG2067 2470267 2471607 + [I] Long-chain fatty acid transport protein 1253 cds-NP_708226.1 CDS ROG0762 2472119 2473327 + NA cds-NP_708227.1 CDS NA 2473302 2474369 + NA 1254 vacJ CDS COG2853 2474551 2475306 - [M] Surface lipoprotein 1255 rna-SF4487 tRNA NA 2476606 2476680 + NA 1256 cds-NP_708230.1 CDS COG0582 2476842 2477336 + [L] Integrase 1257 cds-NP_708231.1 CDS COG2801 2477311 2478150 - [L] Transposase and inactivated derivatives 1258 cds-NP_708234.2 CDS COG1621 2479381 2480814 + [G] Beta-fructosidases (levanase/invertase) 1259 cds-NP_708235.2 CDS COG1609 2480822 2481880 - [K] Transcriptional regulators 1260 cds-NP_708236.1 CDS COG2610 2482028 2482246 + [GE] H+/gluconate symporter and related permeases dsdA CDS COG3048 2482264 2483592 + [E] D-serine dehydratase 1261 emrY CDS NA 2483700 2485238 - NA emrK CDS COG1566 2485238 2486401 - [V] Multidrug resistance efflux pump 1262 evgA CDS COG2197 2486817 2487431 + [TK] Response regulator containing a CheY-like receiver evgS CDS COG0642 2487436 2491029 + [T] Signal transduction histidine kinase 1263 yfdE CDS COG1804 2491085 2492230 - [C] Predicted acyl-CoA transferases/carnitine dehydratase yfdV CDS COG0679 2492304 2493248 - [R] Predicted permeases 1264 cds-NP_708244.1 CDS COG3960 2493318 2495012 - [R] Glyoxylate carboligase cds-NP_708245.1 CDS COG1804 2495066 2496316 - [C] Predicted acyl-CoA transferases/carnitine dehydratase 1265 cds-NP_708246.1 CDS NA 2496829 2497452 - NA 1266 cds-YP_008439267.1 CDS NA 2497749 2498024 + NA 1267 cds-NP_708247.1 CDS COG3856 2498101 2498343 - [S] Uncharacterized conserved protein (small basic protein) 1268 ddg CDS COG1560 2498630 2499616 + [M] Lauroyl/myristoyl acyltransferase 1269 cds-NP_708249.2 CDS COG0436 2500107 2501345 - [E] Aspartate/tyrosine/aromatic aminotransferase 1270 cds-NP_708250.2 CDS COG3279 2503223 2503957 + [KT] Response regulator of the LytR/AlgR family 1271 cds-NP_708251.1 CDS COG1080 2504830 2507325 - [G] Phosphoenolpyruvate-protein kinase (PTS system EI component cds-NP_708252.1 CDS COG1363 2507350 2508387 - [G] Cellulase M and related proteins 1272 cds-NP_708253.1 CDS COG1299 2509485 2510732 - [G] Phosphotransferase system, fructose-specific IIC component cds-NP_708254.2 CDS COG1445 2510754 2511080 - [G] Phosphotransferase system fructose-specific component IIB 1273 glk CDS COG0837 2511299 2512264 - [G] Glucokinase 1274 cds-NP_708256.1 CDS ROG4630 2512468 2513724 + NA 1275 cds-NP_708257.1 CDS ROG0756 2513839 2514165 + NA 1276 mntH CDS COG1914 2514306 2515544 - [P] Mn2+ and Fe2+ transporters of the 1277 nupC CDS COG1972 2515880 2517082 + [F] Nucleoside permease 1278 rna-SF4488 tRNA NA 2519452 2519527 - NA rna-SF4489 tRNA NA 2519567 2519642 - NA 1279 yfeC CDS ROG3866 2519878 2520222 + NA yfeD CDS COG1476 2520245 2520622 + [K] Predicted transcriptional regulators 1280 gltX CDS COG0008 2520674 2522089 - [J] Glutamyl- and glutaminyl-tRNA synthetases 1281 rna-SF4490 tRNA NA 2522348 2522423 + NA rna-SF4491 tRNA NA 2522467 2522542 + NA rna-SF4492 tRNA NA 2522547 2522622 + NA 1282 flxA CDS ROG0073 2522898 2523239 + NA 1283 yfeR CDS COG0583 2523230 2524156 - [K] Transcriptional regulator 1284 yfeH CDS COG0385 2524246 2525244 + [R] Predicted Na+-dependent transporter 1285 ligA CDS COG0272 2525461 2527476 - [L] NAD-dependent DNA ligase (contains BRCT domain zipA CDS COG3115 2527547 2528530 - [D] Cell division protein 1286 cysZ CDS COG2981 2528763 2529524 + [E] Uncharacterized protein involved in cysteine biosynthesis 1287 cysK CDS COG0031 2529709 2530680 + [E] Cysteine synthase 1288 ptsH CDS COG1925 2531064 2531321 + [G] Phosphotransferase system, HPr-related proteins ptsI CDS COG1080 2531366 2533093 + [G] Phosphoenolpyruvate-protein kinase (PTS system EI component crr CDS COG2190 2533134 2533643 + [G] Phosphotransferase system IIA components 1289 pdxK CDS COG2240 2533685 2534536 - [H] Pyridoxal/pyridoxine/pyridoxamine kinase 1290 yfeK CDS ROG3302 2534641 2535015 + NA 1291 cysM CDS COG0031 2535975 2536886 - [E] Cysteine synthase cds-YP_008439268.1 CDS COG1118 2537020 2538117 - [P] ABC-type sulfate/molybdate transport systems, ATPase component 1292 cysU CDS COG0555 2538982 2539815 - [O] ABC-type sulfate transport system, permease component cysP CDS COG4150 2539815 2540831 - [P] ABC-type sulfate transport system, periplasmic component 1293 ucpA CDS COG1028 2541135 2541926 - [IQR] Dehydrogenases with different specificities (related to 1294 yfeT CDS COG1737 2542113 2543114 - [K] Transcriptional regulators 1295 murQ CDS COG2103 2543077 2543973 + [R] Predicted sugar phosphate isomerase murP CDS COG1264 2543977 2545401 + [G] Phosphotransferase system IIB components 1296 cds-NP_708282.2 CDS COG2837 2545581 2546480 - [P] Predicted iron-dependent peroxidase 1297 cds-NP_708283.1 CDS NA 2546576 2547151 - NA cds-NP_708284.2 CDS ROG4313 2547212 2547661 - NA cds-NP_708285.2 CDS COG0454 2547648 2548073 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1298 amiA CDS COG0860 2548287 2549156 + [M] N-acetylmuramoyl-L-alanine amidase hemF CDS COG0408 2549160 2550059 + [H] Coproporphyrinogen III oxidase 1299 cds-NP_708288.2 CDS COG4577 2551163 2551663 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein cds-NP_708289.1 CDS COG4816 2551676 2552335 - [E] Ethanolamine utilization protein 1300 cds-NP_708290.1 CDS COG2865 2553517 2554308 + [K] Predicted transcriptional regulator containing an HTH 1301 cds-NP_708291.1 CDS ROG3286 2555028 2555423 + NA cds-NP_708292.1 CDS ROG4180 2555441 2555704 + NA cds-NP_708293.1 CDS NA 2555727 2556269 + NA 1302 cds-NP_708294.2 CDS NA 2556366 2556695 + NA cds-YP_008439269.1 CDS NA 2556734 2556940 + NA 1303 cds-NP_708295.2 CDS COG0076 2557525 2557737 + [E] Glutamate decarboxylase and related PLP-dependent proteins 1304 cds-NP_708296.2 CDS COG0531 2557989 2559449 + [E] Amino acid transporters cds-NP_708297.1 CDS COG0796 2559471 2560292 + [M] Glutamate racemase 1305 cds-NP_708298.1 CDS COG1662 2560411 2560806 - [L] Transposase and inactivated derivatives, IS1 family cds-YP_008439270.1 CDS COG3677 2560833 2561105 - [L] Transposase and inactivated derivatives 1306 eutA CDS COG4819 2561624 2562997 - [E] Ethanolamine utilization protein, possible chaperonin protecting cds-NP_708300.1 CDS COG4917 2562972 2563451 - [E] Ethanolamine utilization protein cds-NP_708301.1 CDS COG4810 2563464 2563871 - [E] Ethanolamine utilization protein 1307 cds-NP_708302.1 CDS COG0281 2564092 2566371 - [C] Malic enzyme 1308 talA CDS COG0176 2566660 2567610 + [G] Transaldolase tktB CDS COG0021 2567630 2569633 + [G] Transketolase 1309 cds-NP_708305.2 CDS ROG3302 2569736 2570779 - NA 1310 yffH CDS COG0494 2570905 2571480 - [LR] NTP pyrophosphohydrolases including oxidative damage repair yffG CDS COG0493 2571548 2573527 - [ER] NADPH-dependent glutamate synthase beta chain and 1311 acrD CDS COG0841 2575652 2578765 + [V] Cation/multidrug efflux pump 1312 yffB CDS COG1393 2579304 2579660 + [P] Arsenate reductase and related proteins, glutaredoxin dapE CDS COG0624 2579664 2580791 + [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases cds-NP_708311.3 CDS NA 2580795 2581019 + NA 1313 ypfH CDS COG0400 2581129 2581827 - [R] Predicted esterase ypfI CDS COG1444 2581901 2583916 - [R] Predicted P-loop ATPase fused to an cds-NP_708314.1 CDS COG2321 2583931 2584794 - [R] Predicted metalloprotease 1314 purC CDS COG0152 2584962 2585675 - [F] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 1315 nlpB CDS COG3317 2585888 2586922 - [M] Uncharacterized lipoprotein dapA CDS COG0329 2586939 2587817 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1316 gcvR CDS COG2716 2587963 2588535 + [E] Glycine cleavage system regulatory protein bcp CDS COG1225 2588535 2589005 + [O] Peroxiredoxin 1317 hyfA CDS COG1142 2589258 2589875 + [C] Fe-S-cluster-containing hydrogenase components 2 1318 hyfC CDS COG0650 2591903 2592850 + [C] Formate hydrogenlyase subunit 4 hyfD CDS COG1009 2592867 2594306 + [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit hyfE CDS COG4237 2594318 2594968 + [C] Hydrogenase 4 membrane component (E) hyfF CDS COG0651 2594973 2596559 + [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, 1319 hyfH CDS COG1143 2598273 2598818 + [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 hyfI CDS COG3260 2598815 2599573 + [C] Ni,Fe-hydrogenase III small subunit cds-NP_708329.2 CDS ROG4904 2599503 2599979 + NA 1320 perM CDS COG0628 2603009 2604070 - [R] Predicted permease 1321 cds-NP_708332.1 CDS COG4783 2604283 2605746 + [R] Putative Zn-dependent protease, contains TPR repeats cds-NP_708333.1 CDS COG1393 2605767 2606126 + [P] Arsenate reductase and related proteins, glutaredoxin 1322 cds-NP_708334.1 CDS NA 2606259 2607005 - NA uraA CDS COG2233 2607055 2608344 - [F] Xanthine/uracil permeases upp CDS COG0035 2608430 2609056 - [F] Uracil phosphoribosyltransferase 1323 purM CDS COG0150 2609365 2610417 + [F] Phosphoribosylaminoimidazole (AIR) synthetase purN CDS COG0299 2610417 2611055 + [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN 1324 ppk CDS COG0855 2611227 2613293 + [P] Polyphosphate kinase ppx CDS COG0248 2613298 2614839 + [FP] Exopolyphosphatase 1325 cds-NP_708341.1 CDS COG2963 2616053 2616355 + [L] Transposase and inactivated derivatives cds-NP_708342.1 CDS COG2801 2616391 2617209 + [L] Transposase and inactivated derivatives 1326 cds-YP_008439271.1 CDS NA 2618570 2618722 - NA 1327 cds-NP_708343.1 CDS NA 2618740 2618931 + NA 1328 cds-NP_708344.1 CDS COG3133 2619242 2619760 + [M] Outer membrane lipoprotein cds-NP_708345.1 CDS NA 2619776 2620315 + NA 1329 guaA CDS COG0519 2620410 2621987 - [F] GMP synthase, PP-ATPase domain/subunit guaB CDS COG0516 2622056 2623522 - [F] IMP dehydrogenase/GMP reductase 1330 xseA CDS COG1570 2623684 2625054 + [L] Exonuclease VII, large subunit 1331 cds-NP_708349.1 CDS ROG5462 2625051 2625302 - NA engA CDS COG1160 2625335 2626807 - [R] Predicted GTPases cds-NP_708351.1 CDS COG1520 2626925 2628103 - [S] FOG: WD40-like repeat cds-NP_708352.1 CDS COG2976 2628114 2628734 - [S] Uncharacterized protein conserved in bacteria hisS CDS COG0124 2628752 2630026 - [J] Histidyl-tRNA synthetase ispG CDS COG0821 2630129 2631256 - [I] Enzyme involved in the deoxyxylulose pathway yfgA CDS COG1426 2631283 2632296 - [S] Uncharacterized protein conserved in bacteria 1332 yfgB CDS COG0820 2632581 2633735 - [R] Predicted Fe-S-cluster redox enzyme ndk CDS COG0105 2633885 2634316 - [F] Nucleoside diphosphate kinase 1333 cds-NP_708358.1 CDS COG4953 2634466 2636580 - [M] Membrane carboxypeptidase/penicillin-binding protein PbpC 1334 sseB CDS ROG1492 2639310 2640086 - NA 1335 pepB CDS COG0260 2640228 2641511 - [E] Leucyl aminopeptidase yfhJ CDS COG2975 2641570 2641770 - [S] Uncharacterized protein conserved in bacteria fdx CDS COG0633 2641782 2642117 - [C] Ferredoxin hscA CDS COG0443 2642119 2643969 - [O] Molecular chaperone hscB CDS COG1076 2643986 2644501 - [O] DnaJ-domain-containing proteins 1 iscA CDS COG0316 2644597 2644920 - [S] Uncharacterized conserved protein cds-NP_708368.1 CDS COG0822 2644937 2645323 - [C] NifU homolog involved in Fe-S cluster yfhO CDS COG1104 2645351 2646565 - [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related cds-NP_708370.1 CDS COG1959 2646677 2647165 - [K] Predicted transcriptional regulator 1336 cds-NP_708371.1 CDS COG0565 2647435 2648175 - [J] rRNA methylase 1337 suhB CDS COG0483 2648294 2649097 + [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of 1338 cds-NP_708373.2 CDS COG1073 2649242 2650096 + [R] Hydrolases of the alpha/beta superfamily 1339 csiE CDS COG3711 2650287 2651567 + [K] Transcriptional antiterminator 1340 hcaT CDS NA 2651559 2652698 - NA 1341 hcaR CDS COG0583 2652858 2653748 - [K] Transcriptional regulator 1342 hcaA1 CDS COG4638 2653884 2655245 + [PR] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, hcaA2 CDS COG5517 2655242 2655760 + [Q] Small subunit of phenylpropionate dioxygenase hcaC CDS COG2146 2655760 2656080 + [PR] Ferredoxin subunits of nitrite reductase and hcaB CDS COG1028 2656077 2656889 + [IQR] Dehydrogenases with different specificities (related to 1343 yphA CDS COG2259 2658146 2658640 + [S] Predicted membrane protein 1344 yphB CDS COG2017 2658688 2659560 - [G] Galactose mutarotase and related enzymes yphC CDS COG1063 2659572 2660666 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases yphD CDS COG1172 2660699 2661697 - [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components yphE CDS COG1129 2661722 2663233 - [G] ABC-type sugar transport system, ATPase component 1345 yphH CDS COG1940 2667734 2668927 + [KG] Transcriptional regulator/sugar kinase 1346 glyA CDS COG0112 2669125 2670378 - [E] Glycine/serine hydroxymethyltransferase 1347 hmpA CDS COG1017 2670705 2671895 + [C] Hemoglobin-like flavoprotein 1348 glnB CDS COG0347 2671940 2672278 - [E] Nitrogen regulatory protein PII yfhA CDS COG2204 2672339 2673673 - [T] Response regulator containing CheY-like receiver, AAA-type yfhG CDS ROG4736 2673663 2674376 - NA 1349 yfhK CDS COG0642 2674541 2676031 - [T] Signal transduction histidine kinase 1350 purL CDS COG0046 2676526 2680413 - [F] Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 1351 yfhD CDS COG4623 2680810 2682228 + [M] Predicted soluble lytic transglycosylase fused to 1352 yfhC CDS COG0590 2682225 2682761 - [FJ] Cytosine/adenosine deaminases yfhB CDS NA 2682786 2683358 - NA 1353 yfhH CDS COG1737 2683558 2684478 + [K] Transcriptional regulators 1354 cds-NP_708399.2 CDS COG1961 2684931 2685371 - [L] Site-specific recombinases, DNA invertase Pin homologs 1355 ipaH_7 CDS COG4886 2685872 2687698 + [S] Leucine-rich repeat (LRR) protein 1356 cds-NP_708401.1 CDS NA 2687878 2688501 - NA 1357 cds-NP_708403.1 CDS NA 2689740 2690228 - NA cds-NP_708404.1 CDS NA 2690288 2690806 - NA 1358 cds-NP_708405.3 CDS COG2963 2690825 2691235 + [L] Transposase and inactivated derivatives cds-NP_708406.1 CDS COG2801 2691193 2692098 + [L] Transposase and inactivated derivatives 1359 cds-NP_708407.1 CDS COG5301 2691932 2693011 - [R] Phage-related tail fibre protein cds-NP_708408.1 CDS NA 2692998 2693603 - NA cds-NP_708409.1 CDS NA 2693605 2694072 - NA 1360 cds-NP_708410.1 CDS COG2963 2694367 2694669 + [L] Transposase and inactivated derivatives cds-NP_708411.1 CDS COG2801 2694810 2695523 + [L] Transposase and inactivated derivatives 1361 yfhL CDS COG1145 2696878 2697138 + [C] Ferredoxin 1362 acpS CDS COG0736 2697832 2698212 - [I] Phosphopantetheinyl transferase (holo-ACP synthase) pdxJ CDS COG0854 2698212 2698943 - [H] Pyridoxal phosphate biosynthesis protein recO CDS COG1381 2698955 2699683 - [L] Recombinational DNA repair protein (RecF pathway) era CDS COG1159 2699695 2700600 - [R] GTPase rnc CDS COG0571 2700597 2701277 - [K] dsRNA-specific ribonuclease 1363 lepB CDS COG0681 2701549 2702523 - [U] Signal peptidase I lepA CDS COG0481 2702539 2704338 - [M] Membrane GTPase LepA 1364 rseC CDS COG3086 2704536 2705015 - [T] Positive regulator of sigma E activity rseB CDS COG3026 2705012 2705968 - [T] Negative regulator of sigma E activity rseA CDS COG3073 2705968 2706618 - [T] Negative regulator of sigma E activity rpoE CDS COG1595 2706651 2707226 - [K] DNA-directed RNA polymerase specialized sigma subunit, 1365 yfiC CDS COG4123 2709241 2710098 - [R] Predicted O-methyltransferase 1366 srmB CDS COG0513 2710110 2711444 + [LKJ] Superfamily II DNA and RNA helicases 1367 yfiE CDS COG0583 2711479 2712405 - [K] Transcriptional regulator 1368 yfiK CDS COG1280 2712463 2713050 + [E] Putative threonine efflux protein 1369 yfiD CDS COG3445 2713106 2713489 - [R] Acid-induced glycyl radical enzyme 1370 yfiF CDS COG0566 2714531 2715568 - [J] rRNA methylases 1371 trxC CDS COG0526 2715775 2716194 + [OC] Thiol-disulfide isomerase and thioredoxins yfiP CDS COG3148 2716239 2716961 + [S] Uncharacterized conserved protein yfiQ CDS COG1042 2716993 2719653 + [C] Acyl-CoA synthetase (NDP forming) 1372 pssA CDS NA 2719767 2721122 + NA yfiM CDS COG5544 2721147 2721491 + [R] Predicted periplasmic lipoprotein 1373 kgtP CDS COG0477 2721488 2722786 - [GEPR] Permeases of the major facilitator superfamily 1374 rrfG rRNA NA 2723110 2723228 - NA rrlG rRNA NA 2723323 2726226 - NA rna-SF4495 tRNA NA 2726410 2726485 - NA rna-SF4496 tRNA NA 2726528 2726604 - NA rrsG rRNA NA 2726673 2728213 - NA 1375 cds-NP_708441.1 CDS COG4105 2728825 2729562 - [R] DNA uptake lipoprotein 1376 rluD CDS COG0564 2729697 2730677 + [J] Pseudouridylate synthases, 23S RNA-specific yfiH CDS COG1496 2730674 2731405 + [S] Uncharacterized conserved protein 1377 clpB CDS COG0542 2731535 2734108 + [O] ATPases with chaperone activity, ATP-binding subunit 1378 cds-NP_708445.1 CDS COG3385 2734145 2735491 - [L] FOG: Transposase and inactivated derivatives 1379 yfiA CDS COG1544 2735805 2736146 + [J] Ribosome-associated protein Y (PSrp-1) 1380 pheA CDS COG0077 2736396 2737556 + [E] Prephenate dehydratase 1381 tyrA CDS COG1605 2737599 2738720 - [E] Chorismate mutase aroF CDS COG0722 2738731 2739801 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 1382 yfiL CDS ROG2807 2740011 2740376 + NA 1383 cds-NP_708452.1 CDS ROG7826 2740526 2741044 + NA 1384 yfiB CDS COG2885 2742275 2742757 + [M] Outer membrane protein and related peptidoglycan-associated 1385 rplS CDS COG0335 2742834 2743181 - [J] Ribosomal protein L19 trmD CDS COG0336 2743223 2743990 - [J] tRNA-(guanine-N1)-methyltransferase rimM CDS COG0806 2744021 2744569 - [J] RimM protein, required for 16S rRNA rpsP CDS COG0228 2744588 2744836 - [J] Ribosomal protein S16 ffh CDS COG0541 2744973 2746334 - [U] Signal recognition particle GTPase 1386 cds-NP_708459.1 CDS COG4137 2746426 2747292 + [R] ABC-type uncharacterized transport system, permease component yfjD CDS COG4536 2747337 2748599 + [P] Putative Mg2+ and Co2+ transporter CorB 1387 grpE CDS COG0576 2748654 2749247 - [O] Molecular chaperone GrpE (heat shock protein) 1388 ppnK CDS COG0061 2749370 2750248 + [G] Predicted sugar kinase recN CDS COG0497 2750334 2751995 + [L] ATPase involved in DNA repair smpA CDS COG2913 2752144 2752485 + [J] Small protein A (tmRNA-binding) 1389 cds-NP_708465.2 CDS COG2914 2752547 2752837 - [S] Uncharacterized protein conserved in bacteria cds-NP_708466.2 CDS COG2867 2752827 2753264 - [I] Oligoketide cyclase/lipid transport protein 1390 smpB CDS COG0691 2753435 2753917 + [O] tmRNA-binding protein 1391 cds-NP_708468.1 CDS COG0582 2754699 2755940 + [L] Integrase 1392 insA_45 CDS COG3677 2756140 2756415 + [L] Transposase and inactivated derivatives insB_53 CDS COG1662 2756442 2756837 + [L] Transposase and inactivated derivatives, IS1 family 1393 cds-NP_708471.1 CDS COG2963 2756947 2757255 + [L] Transposase and inactivated derivatives cds-NP_708472.1 CDS COG2801 2757252 2758118 + [L] Transposase and inactivated derivatives 1394 rna-SF4498 tRNA NA 2758366 2758441 - NA 1395 cds-YP_008439272.1 CDS NA 2759000 2761252 + NA 1396 cds-NP_708473.3 CDS ROG3396 2761483 2762520 + NA ygaF CDS COG0579 2762474 2763808 + [R] Predicted dehydrogenase 1397 gabT CDS COG0160 2765446 2766573 + [E] 4-aminobutyrate aminotransferase and related aminotransferases 1398 ygaE CDS COG1802 2768232 2768894 + [K] Transcriptional regulators 1399 ygaU CDS COG1652 2768895 2769344 - [S] Uncharacterized protein containing LysM domain cds-YP_008439273.1 CDS COG0401 2769428 2769586 - [S] Uncharacterized homolog of Blt101 1400 cds-NP_708479.1 CDS COG2801 2769687 2770592 - [L] Transposase and inactivated derivatives cds-NP_708480.3 CDS COG2963 2770550 2770960 - [L] Transposase and inactivated derivatives 1401 cds-NP_708481.1 CDS COG0640 2771105 2771404 + [K] Predicted transcriptional regulators ygaP CDS COG0607 2771414 2771938 + [P] Rhodanese-related sulfurtransferase 1402 stpA CDS COG2916 2771985 2772389 - [R] DNA-binding protein H-NS 1403 cds-NP_708484.1 CDS ROG1113 2773057 2773506 + NA 1404 ygaC CDS NA 2773543 2773887 - NA 1405 nrdH CDS COG0695 2774616 2774861 + [O] Glutaredoxin and related proteins nrdI CDS COG1780 2774858 2775268 + [F] Protein involved in ribonucleotide reduction nrdE CDS COG0209 2775280 2777385 + [F] Ribonucleotide reductase, alpha subunit nrdF CDS COG0208 2777395 2778354 + [F] Ribonucleotide reductase, beta subunit 1406 proV CDS COG4175 2778709 2779911 + [E] ABC-type proline/glycine betaine transport system, ATPase proW CDS COG4176 2779904 2780968 + [E] ABC-type proline/glycine betaine transport system, permease proX CDS COG2113 2781026 2782018 + [E] ABC-type proline/glycine betaine transport systems, periplasmic 1407 cds-NP_708495.1 CDS COG1296 2783513 2784250 + [E] Predicted branched-chain amino acid permease (azaleucine ygaH CDS NA 2784240 2784575 + NA 1408 emrB CDS COG0477 2786513 2788051 + [GEPR] Permeases of the major facilitator superfamily 1409 ygaG CDS COG1854 2788115 2788630 - [T] LuxS protein involved in autoinducer AI2 1410 cds-NP_708501.1 CDS COG1238 2790410 2790838 - [S] Predicted membrane protein yqaB CDS COG0637 2790835 2791401 - [R] Predicted phosphatase/phosphohexomutase 1411 rna-SF4499 tRNA NA 2791549 2791625 - NA rna-SF4500 tRNA NA 2791690 2791766 - NA rna-SF4501 tRNA NA 2791831 2791907 - NA rna-SF4502 tRNA NA 2791972 2792048 - NA rna-SF4503 tRNA NA 2792052 2792144 - NA 1412 csrA CDS COG1551 2792460 2792645 - [T] Carbon storage regulator (could also regulate 1413 alaS CDS COG0013 2792880 2795510 - [J] Alanyl-tRNA synthetase recX CDS COG2137 2795638 2796138 - [R] Uncharacterized protein conserved in bacteria recA CDS COG0468 2796381 2797442 - [L] RecA/RadA recombinase ygaD CDS COG1546 2797522 2798019 - [R] Uncharacterized protein (competence- and mitomycin-induced) 1414 mltB CDS COG2951 2798164 2799249 - [M] Membrane-bound lytic murein transglycosylase B 1415 srlE CDS COG3732 2800064 2801023 + [G] Phosphotransferase system sorbitol-specific component IIBC srlB CDS COG3731 2801034 2801405 + [G] Phosphotransferase system sorbitol-specific component IIA srlD CDS COG1028 2801409 2802188 + [IQR] Dehydrogenases with different specificities (related to 1416 gutM CDS COG4578 2802293 2802652 + [K] Glucitol operon activator srlR CDS COG1349 2802719 2803492 + [KG] Transcriptional regulators of sugar metabolism gutQ CDS COG0794 2803524 2804450 + [M] Predicted sugar phosphate isomerase involved in 1417 ygaA CDS COG3604 2804447 2806036 - [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1418 cds-NP_708517.1 CDS COG0426 2806148 2807587 + [C] Uncharacterized flavoproteins ygbD CDS COG0446 2807584 2808717 + [R] Uncharacterized NAD(FAD)-dependent dehydrogenases 1419 hypF CDS COG0068 2808845 2811097 - [O] Hydrogenase maturation factor hydN CDS COG1142 2811250 2811777 - [C] Fe-S-cluster-containing hydrogenase components 2 1420 ascG CDS COG1609 2811926 2812936 - [K] Transcriptional regulators 1421 hycE CDS COG3261 2813079 2814788 - [C] Ni,Fe-hydrogenase III large subunit hycD CDS COG0650 2814806 2815729 - [C] Formate hydrogenlyase subunit 4 hycC CDS COG0651 2815732 2817549 - [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, hycB CDS COG1142 2817586 2818197 - [C] Fe-S-cluster-containing hydrogenase components 2 1422 hycA CDS NA 2818322 2818783 - NA 1423 hypA CDS COG0375 2818983 2819345 + [R] Zn finger protein HypA/HybF (possibly regulating hypB CDS COG0378 2819349 2820221 + [OK] Ni2+-binding GTPase involved in regulation of hypC CDS COG0298 2820212 2820484 + [O] Hydrogenase maturation factor hypD CDS COG0409 2820484 2821605 + [O] Hydrogenase maturation factor hypE CDS COG0309 2821644 2822612 + [O] Hydrogenase maturation factor fhlA CDS COG3604 2822686 2824764 + [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1424 ygbA CDS ROG0422 2824801 2825154 - NA 1425 insB_54 CDS COG1662 2825217 2825720 - [L] Transposase and inactivated derivatives, IS1 family 1426 cds-YP_008439274.1 CDS COG1219 2825948 2826142 - [O] ATP-dependent protease Clp, ATPase subunit 1427 mutS CDS COG0249 2826218 2828779 + [L] Mismatch repair ATPase (MutS family) 1428 ygbI CDS COG1349 2829588 2830385 - [KG] Transcriptional regulators of sugar metabolism 1429 cds-NP_708538.1 CDS COG2963 2831741 2832043 + [L] Transposase and inactivated derivatives cds-NP_708539.1 CDS COG2801 2832079 2832897 + [L] Transposase and inactivated derivatives 1430 cds-NP_708540.2 CDS NA 2833131 2835227 - NA cds-NP_708541.1 CDS COG3423 2835229 2835480 - [K] Predicted transcriptional regulator 1431 cds-NP_708542.1 CDS ROG6576 2835645 2836208 + NA 1432 padI CDS COG0163 2837428 2838021 - [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase 1433 cds-NP_708545.1 CDS COG1846 2838168 2838575 + [K] Transcriptional regulators 1434 cds-NP_708546.1 CDS COG0568 2838695 2839723 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) nlpD CDS COG0739 2839750 2840889 - [M] Membrane proteins related to metalloendopeptidases pcm CDS COG2518 2841029 2841655 - [O] Protein-L-isoaspartate carboxylmethyltransferase surE CDS COG0496 2841649 2842410 - [R] Predicted acid phosphatase truD CDS COG0585 2842391 2843440 - [S] Uncharacterized conserved protein ispF CDS COG0245 2843437 2843916 - [I] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD CDS COG1211 2843916 2844626 - [I] 4-diphosphocytidyl-2-methyl-D-erithritol synthase ftsB CDS COG2919 2844645 2844956 - [D] Septum formation initiator 1435 ygbE CDS NA 2845150 2845473 - NA cysC CDS COG0529 2845523 2846128 - [P] Adenylylsulfate kinase and related kinases cysN CDS COG2895 2846128 2847555 - [P] GTPases - Sulfate adenylate transferase subunit cysD CDS COG0175 2847557 2848465 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase 1436 iap CDS COG2234 2848717 2849754 + [R] Predicted aminopeptidases 1437 cds-NP_708559.1 CDS COG1203 2849840 2850850 - [R] Predicted helicases 1438 cds-YP_008439275.1 CDS NA 2851185 2851337 - NA 1439 cysH CDS COG0175 2851601 2852335 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase cysI CDS COG0155 2852409 2854121 - [P] Sulfite reductase, beta subunit (hemoprotein) cysJ CDS COG0369 2854121 2855920 - [P] Sulfite reductase, alpha subunit (flavoprotein) 1440 ygcM CDS COG0720 2856239 2856601 + [H] 6-pyruvoyl-tetrahydropterin synthase ygcN CDS COG0644 2856649 2857950 + [C] Dehydrogenases (flavoproteins) ygcO CDS COG2440 2857905 2858201 + [C] Ferredoxin-like protein 1441 ygcQ CDS COG2025 2858941 2859834 - [C] Electron transfer flavoprotein, alpha subunit ygcR CDS COG2086 2859798 2860577 - [C] Electron transfer flavoprotein, beta subunit ygcS CDS ROG2472 2860555 2861964 - NA 1442 insB_55 CDS COG1662 2863089 2863592 + [L] Transposase and inactivated derivatives, IS1 family 1443 ygcF CDS COG0602 2863631 2864302 - [O] Organic radical activating enzymes 1444 insA_46 CDS COG3677 2864696 2864971 + [L] Transposase and inactivated derivatives insB_56 CDS COG1662 2864998 2865393 + [L] Transposase and inactivated derivatives, IS1 family 1445 eno CDS COG0148 2866264 2867562 - [G] Enolase pyrG CDS COG0504 2867650 2869287 - [F] CTP synthase (UTP-ammonia lyase) 1446 mazG CDS COG1694 2869515 2870306 - [R] Predicted pyrophosphatase relA CDS COG0317 2870402 2872636 - [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases rumA CDS COG2265 2872684 2873985 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 1447 barA CDS COG0642 2874042 2876798 + [T] Signal transduction histidine kinase 1448 ygcX CDS COG4948 2877030 2878370 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of ygcY CDS COG4948 2878391 2879731 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of cds-NP_708583.1 CDS COG2271 2879733 2881100 - [G] Sugar phosphate permease 1449 cds-NP_708584.1 CDS COG0716 2881534 2881983 - [C] Flavodoxins yqcB CDS COG0564 2882001 2882783 - [J] Pseudouridylate synthases, 23S RNA-specific cds-NP_708586.1 CDS COG3098 2882783 2883112 - [S] Uncharacterized protein conserved in bacteria 1450 syd CDS ROG1988 2883734 2884279 - NA 1451 queF CDS COG2904 2884347 2885195 + [S] Uncharacterized protein conserved in bacteria 1452 ygdH CDS COG1611 2885307 2886671 + [R] Predicted Rossmann fold nucleotide-binding protein 1453 cds-NP_708590.1 CDS COG3385 2886755 2888101 + [L] FOG: Transposase and inactivated derivatives 1454 sdaC CDS COG0814 2888665 2889954 + [E] Amino acid permeases sdaB CDS COG1760 2890012 2891379 + [E] L-serine deaminase xni CDS COG0258 2891400 2892245 + [L] 5'-3' exonuclease (including N-terminal domain of 1455 fucO CDS COG1454 2892298 2893446 - [C] Alcohol dehydrogenase, class IV fucA CDS COG0235 2893474 2894121 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 1456 fucP CDS COG0738 2894668 2895984 + [G] Fucose permease fucI CDS COG2407 2896017 2897792 + [G] L-fucose isomerase and related proteins 1457 fucU CDS COG4154 2899322 2899744 + [G] Fucose dissimilation pathway protein FucU fucR CDS COG1349 2899802 2900533 + [KG] Transcriptional regulators of sugar metabolism 1458 ygdE CDS COG2933 2900577 2901677 - [R] Predicted SAM-dependent methyltransferase ygdD CDS COG2363 2901670 2902065 - [S] Uncharacterized small membrane protein gcvA CDS COG0583 2902084 2903001 - [K] Transcriptional regulator 1459 cds-NP_708603.1 CDS ROG7894 2903352 2903582 - NA 1460 cds-NP_708604.2 CDS COG0520 2903771 2904976 + [E] Selenocysteine lyase ygdK CDS COG2166 2904976 2905419 + [R] SufE protein probably involved in Fe-S 1461 ygdL CDS COG1179 2905470 2906276 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and 1462 mltA CDS COG2821 2906514 2907611 - [M] Membrane-bound lytic murein transglycosylase 1463 rna-SF4504 tRNA NA 2907820 2907896 + NA rna-SF4505 tRNA NA 2907930 2908006 + NA 1464 cds-NP_708608.1 CDS COG0860 2908081 2909424 - [M] N-acetylmuramoyl-L-alanine amidase 1465 argA CDS COG0548 2909566 2910897 + [E] Acetylglutamate kinase 1466 recD CDS COG0507 2910959 2912785 - [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit recB CDS COG1074 2912785 2916327 - [L] ATP-dependent exoDNAse (exonuclease V) beta subunit ptr CDS COG1025 2916320 2919208 - [O] Secreted/periplasmic Zn-dependent peptidases, insulinase-like 1467 recC CDS COG1330 2919384 2922752 - [L] Exonuclease V gamma subunit ppdC CDS COG4967 2922765 2923115 - [NU] Tfp pilus assembly protein PilV ygdB CDS NA 2923100 2923465 - NA cds-YP_008439276.1 CDS COG4795 2923504 2924067 - [U] Type II secretory pathway, component PulJ 1468 thyA CDS COG0207 2924722 2925516 - [F] Thymidylate synthase lgt CDS COG0682 2925523 2926398 - [M] Prolipoprotein diacylglyceryltransferase 1469 ptsP CDS COG3605 2926549 2928795 - [T] Signal transduction protein containing GAF and ygdP CDS COG0494 2928808 2929338 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1470 mutH CDS COG3066 2930023 2930712 + [L] DNA mismatch repair protein cds-NP_708621.1 CDS COG0861 2930781 2931494 + [P] Membrane protein TerC, possibly involved in 1471 cds-NP_708622.1 CDS ROG7894 2931632 2931850 + NA 1472 tas CDS COG0667 2931958 2932998 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1473 ygeD CDS NA 2933031 2934221 - NA aas CDS COG0318 2934214 2936373 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1474 galR CDS COG1609 2936959 2937990 + [K] Transcriptional regulators 1475 lysA CDS COG0019 2937997 2939259 - [E] Diaminopimelate decarboxylase 1476 lysR CDS COG0583 2939381 2940316 + [K] Transcriptional regulator 1477 ygeA CDS COG1794 2940303 2940995 - [M] Aspartate racemase 1478 araE CDS COG2814 2941124 2942542 - [G] Arabinose efflux permease 1479 kduD CDS COG1028 2942857 2943618 - [IQR] Dehydrogenases with different specificities (related to kduI CDS COG3717 2943648 2944484 - [G] 5-keto 4-deoxyuronate isomerase 1480 yqeF CDS COG0183 2944771 2945952 - [I] Acetyl-CoA acetyltransferase 1481 cds-NP_708635.1 CDS COG2963 2948062 2948370 + [L] Transposase and inactivated derivatives cds-NP_708636.1 CDS COG2801 2948367 2949233 + [L] Transposase and inactivated derivatives 1482 cds-NP_708637.1 CDS NA 2949247 2949840 - NA 1483 cds-NP_708638.1 CDS NA 2950472 2951461 - NA 1484 cds-NP_708639.1 CDS ROG5501 2951545 2952036 - NA 1485 cds-NP_708640.1 CDS COG3646 2952334 2953080 - [S] Uncharacterized phage-encoded protein 1486 cds-NP_708641.1 CDS COG2963 2953442 2953780 + [L] Transposase and inactivated derivatives 1487 cds-NP_708644.2 CDS NA 2955455 2955787 - NA 1488 cds-NP_708645.1 CDS COG0582 2955906 2957516 - [L] Integrase 1489 rna-SF4506 tRNA NA 2957651 2957724 - NA 1490 cds-NP_708646.1 CDS COG0739 2957803 2958582 - [M] Membrane proteins related to metalloendopeptidases 1491 cds-NP_708647.1 CDS COG1529 2958973 2961270 + [C] Aerobic-type carbon monoxide dehydrogenase, large subunit ygeT CDS COG1319 2961281 2962159 + [C] Aerobic-type carbon monoxide dehydrogenase, middle subunit cds-NP_708649.1 CDS COG2080 2962156 2962635 + [C] Aerobic-type carbon monoxide dehydrogenase, small subunit 1492 insA_47 CDS COG3677 2962748 2963023 + [L] Transposase and inactivated derivatives 1493 cds-NP_708651.1 CDS COG2801 2963258 2964163 - [L] Transposase and inactivated derivatives cds-NP_708652.3 CDS COG2963 2964121 2964531 - [L] Transposase and inactivated derivatives 1494 ygfU CDS COG2233 2965213 2966730 + [F] Xanthine/uracil permeases 1495 cds-NP_708654.1 CDS COG1443 2966980 2967528 + [I] Isopentenyldiphosphate isomerase 1496 lysS CDS COG1190 2967571 2969088 - [J] Lysyl-tRNA synthetase (class II) cds-YP_008439277.1 CDS COG1186 2969098 2969979 - [J] Protein chain release factor B 1497 recJ CDS COG0608 2970287 2972020 - [L] Single-stranded DNA-specific exonuclease dsbC CDS COG1651 2972026 2972736 - [O] Protein-disulfide isomerase xerD CDS COG4974 2972761 2973657 - [L] Site-specific recombinase XerD 1498 fldB CDS COG0716 2973769 2974290 + [C] Flavodoxins 1499 cds-NP_708660.1 CDS ROG7128 2974330 2974737 - NA ygfY CDS COG2938 2974718 2974984 - [S] Uncharacterized conserved protein 1500 ygfZ CDS COG0354 2975227 2976207 + [R] Predicted aminomethyltransferase related to GcvT 1501 cds-NP_708663.1 CDS COG1272 2976403 2977062 - [R] Predicted membrane protein, hemolysin III homolog 1502 bglA CDS COG2723 2977581 2979014 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 1503 ygfF CDS COG1028 2979071 2979814 - [IQR] Dehydrogenases with different specificities (related to 1504 gcvP CDS COG1003 2980081 2982954 - [E] Glycine cleavage system protein P (pyridoxal-binding), gcvH CDS COG0509 2983073 2983462 - [E] Glycine cleavage system H protein (lipoate-binding) gcvT CDS COG0404 2983486 2984580 - [E] Glycine cleavage system T protein (aminomethyltransferase) 1505 visC CDS COG0654 2985028 2986230 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ubiH CDS COG0654 2986253 2987431 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases pepP CDS COG0006 2987428 2988753 - [E] Xaa-Pro aminopeptidase ygfB CDS COG3079 2988779 2989357 - [S] Uncharacterized protein conserved in bacteria 1506 ygfE CDS COG3027 2989525 2989854 + [S] Uncharacterized protein conserved in bacteria 1507 ygfA CDS COG0212 2990154 2990702 + [H] 5-formyltetrahydrofolate cyclo-ligase 1508 serA CDS COG0111 2991483 2992715 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1509 rpiA CDS COG0120 2992971 2993630 - [G] Ribose 5-phosphate isomerase 1510 iciA CDS COG0583 2994013 2994906 + [K] Transcriptional regulator 1511 sbm CDS COG1884 2995110 2997254 + [I] Methylmalonyl-CoA mutase, N-terminal domain/subunit ygfD CDS COG1703 2997247 2998242 + [E] Putative periplasmic protein kinase ArgK and ygfG CDS COG1024 2998211 2999038 + [I] Enoyl-CoA hydratase/carnithine racemase 1512 ygfI CDS COG0583 3000482 3001432 - [K] Transcriptional regulator 1513 yggE CDS COG2968 3001599 3002339 - [S] Uncharacterized conserved protein 1514 yggA CDS COG1279 3002432 3003067 - [R] Lysine efflux permease 1515 yggB CDS COG0668 3003206 3004066 - [M] Small-conductance mechanosensitive channel 1516 fba CDS COG0191 3004257 3005336 - [G] Fructose/tagatose bisphosphate aldolase pgk CDS COG0126 3005551 3006714 - [G] 3-phosphoglycerate kinase epd CDS COG0057 3006764 3007783 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 1517 cds-NP_708688.1 CDS COG1661 3008317 3008586 + [R] Predicted DNA-binding protein with PD1-like DNA-binding cds-NP_708689.1 CDS ROG0240 3008609 3009187 + NA 1518 cds-NP_708690.2 CDS COG1122 3009883 3010560 + [P] ABC-type cobalt transport system, ATPase component cds-NP_708691.2 CDS COG1118 3010554 3011231 + [P] ABC-type sulfate/molybdate transport systems, ATPase component 1519 frcK CDS COG1072 3011203 3011916 - [H] Panthothenate kinase yggD CDS COG3722 3011913 3012422 - [K] Transcriptional regulator 1520 cds-NP_708695.3 CDS COG1063 3013406 3014647 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases insB_57 CDS COG1662 3014649 3015044 - [L] Transposase and inactivated derivatives, IS1 family insA_48 CDS COG3677 3015071 3015346 - [L] Transposase and inactivated derivatives 1521 cds-NP_708698.1 CDS COG0330 3015837 3016745 + [O] Membrane protease subunits, stomatin/prohibitin homologs 1522 tktA CDS COG0021 3016791 3018782 - [G] Transketolase 1523 yggG CDS COG4784 3018934 3019818 + [R] Putative Zn-dependent protease 1524 speB CDS COG0010 3020024 3020944 - [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 1525 cds-NP_708702.2 CDS NA 3021080 3021454 - NA insB_58 CDS COG1662 3021480 3021875 - [L] Transposase and inactivated derivatives, IS1 family insA_49 CDS COG3677 3021902 3022177 - [L] Transposase and inactivated derivatives speA CDS COG1166 3022206 3024212 - [E] Arginine decarboxylase (spermidine biosynthesis) yqgB CDS NA 3024209 3024355 - NA 1526 cds-YP_008439278.1 CDS NA 3024688 3024939 - NA 1527 metK CDS COG0192 3024995 3026149 + [H] S-adenosylmethionine synthetase 1528 galP CDS COG2814 3026625 3027980 + [G] Arabinose efflux permease 1529 sprT CDS COG3091 3028057 3028554 + [S] Uncharacterized protein conserved in bacteria endA CDS COG2356 3028649 3029356 + [L] Endonuclease I yggJ CDS COG1385 3029436 3030167 + [S] Uncharacterized protein conserved in bacteria gshB CDS COG0189 3030180 3031130 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme yqgE CDS COG1678 3031167 3031802 + [K] Putative transcriptional regulator yqgF CDS COG0816 3031802 3032218 + [L] Predicted endonuclease involved in recombination (possible 1530 yggR CDS COG2805 3032394 3033419 - [NU] Tfp pilus assembly protein, pilus retraction 1531 yggS CDS COG0325 3033392 3034096 + [R] Predicted enzyme with a TIM-barrel fold yggT CDS COG0762 3034114 3034680 + [S] Predicted integral membrane protein yggU CDS COG1872 3034665 3034967 + [S] Uncharacterized conserved protein yggV CDS COG0127 3034975 3035568 + [F] Xanthosine triphosphate pyrophosphatase yggW CDS COG0635 3035561 3036697 + [H] Coproporphyrinogen III oxidase and related Fe-S 1532 cds-NP_708723.2 CDS COG3090 3038019 3038522 + [G] TRAP-type C4-dicarboxylate transport system, small permease 1533 insB_59 CDS COG1662 3038545 3038940 - [L] Transposase and inactivated derivatives, IS1 family insA_50 CDS COG3677 3038967 3039242 - [L] Transposase and inactivated derivatives 1534 cds-NP_708726.2 CDS COG1593 3039299 3040600 + [G] TRAP-type C4-dicarboxylate transport system, large permease 1535 yggM CDS NA 3040701 3041663 - NA 1536 ansB CDS COG0252 3041780 3042826 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 1537 yggN CDS ROG7720 3043002 3043718 - NA 1538 yggL CDS COG3171 3043905 3044261 - [S] Uncharacterized protein conserved in bacteria trmB CDS COG0220 3044231 3044950 - [R] Predicted S-adenosylmethionine-dependent methyltransferase 1539 mutY CDS COG1194 3045111 3046163 + [L] A/G-specific DNA glycosylase yggX CDS COG2924 3046191 3046466 + [CO] Fe-S cluster protector protein mltC CDS COG0741 3046528 3047610 + [M] Soluble lytic murein transglycosylase and related 1540 nupG CDS NA 3047764 3049068 + NA 1541 speC CDS COG1982 3049117 3051312 - [E] Arginine/lysine/ornithine decarboxylases 1542 yqgA CDS COG1811 3051650 3052357 + [R] Uncharacterized membrane protein, possible Na+ channel 1543 rna-SF4507 tRNA NA 3052463 3052538 + NA 1544 cds-NP_708738.1 CDS COG0582 3052736 3053998 + [L] Integrase 1545 cds-NP_708739.1 CDS COG1112 3054451 3057966 + [L] Superfamily I DNA and RNA helicases 1546 cds-YP_008439279.1 CDS NA 3059000 3059248 - NA 1547 cds-NP_708741.2 CDS ROG7083 3059315 3060076 + NA 1548 sigA CDS COG3468 3060437 3064294 + [MU] Type V secretory pathway, adhesin AidA 1549 cds-NP_708744.1 CDS COG3436 3065325 3065672 - [L] Transposase and inactivated derivatives 1550 cds-NP_708745.1 CDS COG3464 3065798 3066304 + [L] Transposase and inactivated derivatives 1551 cds-NP_708746.1 CDS COG3436 3066391 3067305 + [L] Transposase and inactivated derivatives 1552 pic CDS COG3468 3067737 3071855 - [MU] Type V secretory pathway, adhesin AidA 1553 cds-NP_708749.1 CDS COG3344 3072583 3074091 - [L] Retron-type reverse transcriptase 1554 cds-NP_708751.1 CDS NA 3074520 3074771 + NA 1555 cds-NP_708753.1 CDS COG2963 3075173 3075499 - [L] Transposase and inactivated derivatives 1556 cds-NP_708754.1 CDS NA 3075782 3076207 - NA cds-NP_708755.1 CDS COG1142 3076204 3076587 - [C] Fe-S-cluster-containing hydrogenase components 2 1557 cds-NP_708756.1 CDS ROG8356 3076960 3077559 - NA 1558 cds-NP_708757.1 CDS ROG0762 3077717 3078925 - NA 1559 cds-NP_708758.3 CDS COG2963 3079569 3079979 + [L] Transposase and inactivated derivatives cds-NP_708759.1 CDS COG2801 3080055 3080843 + [L] Transposase and inactivated derivatives 1560 cds-NP_708760.1 CDS NA 3081530 3082321 + NA 1561 cds-NP_708761.1 CDS COG3311 3082707 3082913 + [K] Predicted transcriptional regulator 1562 cds-NP_708762.1 CDS NA 3082999 3083571 + NA 1563 cds-NP_708763.1 CDS ROG2075 3085140 3086159 + NA 1564 sap CDS COG3596 3086269 3087141 + [R] Predicted GTPase 1565 cds-NP_708765.1 CDS COG3468 3087469 3090597 + [MU] Type V secretory pathway, adhesin AidA 1566 cds-NP_708766.2 CDS NA 3090718 3093234 + NA 1567 cds-NP_708767.1 CDS NA 3093310 3093765 + NA 1568 cds-YP_008439280.1 CDS NA 3093884 3094072 - NA 1569 cds-NP_708768.1 CDS ROG1397 3094176 3094994 + NA 1570 cds-NP_708769.2 CDS ROG6574 3095336 3095809 + NA yeeS CDS COG2003 3095810 3096301 + [L] DNA repair proteins 1571 yeeT CDS NA 3096388 3096609 + NA 1572 yeeU CDS NA 3096689 3097066 + NA yeeV CDS NA 3097113 3097490 + NA yeeW CDS NA 3097487 3097975 + NA cds-NP_708775.1 CDS NA 3097995 3098192 + NA 1573 cds-NP_708776.1 CDS NA 3098277 3099119 + NA 1574 cds-NP_708777.1 CDS ROG0762 3099722 3100930 + NA 1575 cds-NP_708778.1 CDS ROG4681 3101189 3101479 + NA 1576 cds-NP_708779.1 CDS COG2963 3101873 3102181 + [L] Transposase and inactivated derivatives cds-NP_708780.1 CDS COG2801 3102178 3103044 + [L] Transposase and inactivated derivatives 1577 cds-NP_708781.1 CDS COG4960 3103148 3103615 - [OU] Flp pilus assembly protein, protease CpaA cds-NP_708782.1 CDS COG3847 3103681 3103920 - [U] Flp pilus assembly protein, pilin Flp 1578 cds-NP_708783.1 CDS COG3710 3104055 3104660 - [K] DNA-binding winged-HTH domains 1579 insA_51 CDS COG3677 3105198 3105473 - [L] Transposase and inactivated derivatives 1580 insA_52 CDS COG3677 3105967 3106242 - [L] Transposase and inactivated derivatives 1581 glcB CDS COG2225 3109642 3111813 - [C] Malate synthase glcG CDS COG3193 3111835 3112239 - [R] Uncharacterized protein, possibly involved in utilization 1582 cds-YP_008439281.1 CDS COG0277 3113474 3114526 - [C] FAD/FMN-containing dehydrogenases 1583 glcC CDS COG2186 3116276 3117046 + [K] Transcriptional regulators 1584 cds-NP_708792.2 CDS COG0318 3118715 3120403 + [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II cds-NP_708793.1 CDS COG0702 3120418 3121314 + [MG] Predicted nucleoside-diphosphate-sugar epimerases cds-NP_708794.1 CDS COG0236 3121347 3121595 + [IQ] Acyl carrier protein cds-NP_708795.1 CDS COG0156 3121595 3121945 + [H] 7-keto-8-aminopelargonate synthetase and related enzymes 1585 cds-NP_708797.1 CDS COG0795 3122802 3123881 - [R] Predicted permeases cds-NP_708798.1 CDS COG0795 3123878 3124948 - [R] Predicted permeases cds-NP_708799.2 CDS COG3054 3124979 3125539 - [R] Predicted transcriptional regulator cds-NP_708800.1 CDS NA 3125551 3126375 - NA yghQ CDS COG2244 3126375 3127724 - [R] Membrane protein involved in the export yghR CDS ROG5105 3127770 3128528 - NA yghS CDS ROG5105 3128560 3129273 - NA 1586 yghT CDS ROG5105 3129447 3130139 + NA 1587 pitB CDS COG0306 3130188 3131687 - [P] Phosphate/sulphate permeases 1588 gsp CDS COG0754 3131979 3133838 - [E] Glutathionylspermidine synthase 1589 cds-NP_708807.1 CDS COG0625 3133995 3134909 + [O] Glutathione S-transferase 1590 hybG CDS COG0298 3135032 3135280 - [O] Hydrogenase maturation factor hypA_2 CDS COG0375 3135414 3135755 - [R] Zn finger protein HypA/HybF (possibly regulating hybE CDS ROG0539 3135748 3136236 - NA hybD CDS COG0680 3136229 3136723 - [C] Ni,Fe-hydrogenase maturation factor hybC CDS COG0374 3136723 3138426 - [C] Ni,Fe-hydrogenase I large subunit hybB CDS COG5557 3138423 3139601 - [C] Polysulphide reductase hybA CDS COG0437 3139591 3140577 - [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_708815.1 CDS COG1740 3140580 3141698 - [C] Ni,Fe-hydrogenase I small subunit 1591 cds-NP_708816.1 CDS NA 3141887 3142174 - NA 1592 cds-NP_708817.3 CDS COG0412 3142293 3143219 - [Q] Dienelactone hydrolase and related enzymes 1593 cds-NP_708818.1 CDS COG0667 3143337 3144377 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1594 yqhA CDS COG2862 3144417 3144911 - [S] Predicted membrane protein 1595 yghA CDS COG1028 3145102 3145986 + [IQR] Dehydrogenases with different specificities (related to 1596 exbD CDS COG0848 3146258 3146683 - [U] Biopolymer transport protein exbB CDS COG0811 3146690 3147424 - [U] Biopolymer transport proteins cds-NP_708823.1 CDS NA 3147417 3147572 - NA 1597 metC CDS COG0626 3147676 3148863 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases 1598 yghB CDS COG0586 3149003 3149662 + [S] Uncharacterized membrane-associated protein 1599 yqhC CDS COG2207 3149702 3150829 - [K] AraC-type DNA-binding domain-containing proteins 1600 yqhD CDS COG1979 3150795 3151958 + [C] Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family 1601 yqhE CDS COG0656 3152180 3152890 + [R] Aldo/keto reductases, related to diketogulonate reductase 1602 yqhG CDS ROG8196 3153090 3154016 + NA yqhH CDS COG4238 3154067 3154324 + [M] Murein lipoprotein 1603 cds-NP_708831.3 CDS COG1032 3154367 3156586 - [C] Fe-S oxidoreductase 1604 sufI CDS COG2132 3156697 3158109 - [Q] Putative multicopper oxidases plsC CDS COG0204 3158184 3158921 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 1605 parC CDS COG0188 3159155 3161413 - [L] Type IIA topoisomerase (DNA gyrase/topo II, 1606 cds-NP_708835.1 CDS COG3449 3161959 3162441 - [L] DNA gyrase inhibitor ygiW CDS COG3111 3162494 3162886 - [S] Uncharacterized conserved protein 1607 ygiX CDS COG0745 3163038 3163697 + [TK] Response regulators consisting of a CheY-like ygiY CDS COG0642 3163694 3164968 + [T] Signal transduction histidine kinase 1608 cds-YP_008439282.1 CDS NA 3165014 3165346 - NA 1609 mdaB CDS COG2249 3165665 3166246 + [R] Putative NADPH-quinone reductase (modulator of drug ygiN CDS COG1359 3166277 3166591 + [S] Uncharacterized conserved protein 1610 parE CDS COG0187 3166639 3168531 - [L] Type IIA topoisomerase (DNA gyrase/topo II, yqiA CDS COG3150 3168560 3169141 - [R] Predicted esterase icc CDS COG1409 3169141 3169968 - [R] Predicted phosphohydrolases yqiB CDS COG3151 3169993 3170415 - [S] Uncharacterized protein conserved in bacteria nudF CDS COG0494 3170416 3171045 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1611 tolC CDS ROG3774 3171250 3172731 + NA ygiA CDS NA 3172731 3172991 + NA ygiB CDS COG5463 3172846 3173550 + [S] Predicted integral membrane protein ygiC CDS COG0754 3173556 3174716 + [E] Glutathionylspermidine synthase 1612 ygiD CDS COG3384 3174754 3175569 - [S] Uncharacterized conserved protein 1613 ygiE CDS COG0428 3175685 3176458 + [P] Predicted divalent heavy-metal cations transporter 1614 cds-YP_008439283.1 CDS ROG3817 3176516 3176710 - NA 1615 ribB CDS COG0108 3176947 3177600 - [H] 3,4-dihydroxy-2-butanone 4-phosphate synthase 1616 cds-NP_708853.1 CDS COG2960 3177914 3178264 + [S] Uncharacterized protein conserved in bacteria 1617 cds-NP_708854.3 CDS COG2963 3178475 3178885 + [L] Transposase and inactivated derivatives cds-NP_708855.1 CDS COG2801 3178843 3179694 + [L] Transposase and inactivated derivatives 1618 insA_53 CDS COG3677 3179745 3180020 + [L] Transposase and inactivated derivatives insB_60 CDS COG1662 3180047 3180442 + [L] Transposase and inactivated derivatives, IS1 family 1619 glgS CDS NA 3181114 3181314 - NA 1620 cds-NP_708862.1 CDS COG2870 3184444 3185877 - [M] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase glnE CDS COG1391 3185925 3188765 - [OT] Glutamine synthetase adenylyltransferase ygiF CDS COG3025 3188788 3190089 - [S] Uncharacterized conserved protein 1621 ygiM CDS COG3103 3190331 3190951 + [T] SH3 domain protein 1622 cca CDS COG0617 3191015 3192253 + [J] tRNA nucleotidyltransferase/poly(A) polymerase 1623 uppP CDS COG1968 3192416 3193237 - [V] Uncharacterized bacitracin resistance protein folB CDS COG1539 3193328 3193696 - [H] Dihydroneopterin aldolase 1624 ygiH CDS COG0344 3193801 3194418 + [S] Predicted membrane protein 1625 ygiP CDS COG0583 3194361 3195362 - [K] Transcriptional regulator 1626 ttdA CDS COG1951 3195572 3196381 + [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class ttdB CDS COG1838 3196409 3197014 + [C] Tartrate dehydratase beta subunit/Fumarate hydratase class ygjE CDS COG0471 3197062 3198525 + [P] Di- and tricarboxylate transporters 1627 ygjD CDS COG0533 3198567 3199580 - [O] Metal-dependent proteases with possible chaperone activity 1628 rpsU CDS COG0828 3199818 3200033 + [J] Ribosomal protein S21 dnaG CDS COG0358 3200144 3201889 + [L] DNA primase (bacterial type) rpoD CDS COG0568 3202084 3203925 + [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1629 cds-NP_708878.1 CDS COG3385 3204063 3205409 + [L] FOG: Transposase and inactivated derivatives 1630 rna-SF4508 tRNA NA 3206072 3206147 + NA 1631 yqjI CDS COG1695 3207223 3207846 + [K] Predicted transcriptional regulators 1632 ygjG CDS COG4992 3210028 3211317 + [E] Ornithine/acetylornithine aminotransferase 1633 ebgR CDS COG1609 3211908 3212891 + [K] Transcriptional regulators ebgA CDS COG3250 3213074 3216160 + [G] Beta-galactosidase/beta-glucuronidase ebgC CDS COG2731 3216157 3216606 + [G] Beta-galactosidase, beta subunit ygjI CDS COG0531 3216669 3218102 + [E] Amino acid transporters 1634 ygjK CDS ROG3162 3219324 3221675 + NA 1635 ygjL CDS COG1902 3221901 3223919 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family 1636 ygjM CDS COG5499 3223964 3224380 - [K] Predicted transcription regulator containing HTH domain ygjN CDS COG4680 3224377 3224691 - [S] Uncharacterized protein conserved in bacteria 1637 ygjO CDS COG2813 3224976 3226112 - [J] 16S RNA G1207 methylase RsmC 1638 ygjP CDS COG1451 3226161 3226700 + [R] Predicted metal-dependent hydrolase 1639 ygjQ CDS COG2949 3226777 3227469 + [S] Uncharacterized membrane protein ygjR CDS COG0673 3227530 3228546 + [R] Predicted dehydrogenases and related proteins 1640 ygjT CDS COG0861 3228817 3229779 + [P] Membrane protein TerC, possibly involved in 1641 ygjU CDS COG3633 3230377 3231621 + [E] Na+/serine symporter 1642 ygjV CDS ROG3859 3231626 3232177 - NA 1643 uxaA CDS COG2721 3232260 3233747 - [G] Altronate dehydratase uxaC CDS COG1904 3233762 3235174 - [G] Glucuronate isomerase 1644 exuT CDS COG2271 3235659 3236957 + [G] Sugar phosphate permease 1645 cds-NP_708899.2 CDS NA 3237045 3237677 - NA 1646 insA_54 CDS COG3677 3237824 3238099 + [L] Transposase and inactivated derivatives insB_61 CDS COG1662 3238126 3238521 + [L] Transposase and inactivated derivatives, IS1 family 1647 exuR CDS COG2186 3238629 3239405 + [K] Transcriptional regulators 1648 yqjA CDS COG0586 3239750 3240412 + [S] Uncharacterized membrane-associated protein yqjB CDS COG0342 3240431 3240799 + [U] Preprotein translocase subunit SecD 1649 yqjD CDS COG4575 3241338 3241643 + [S] Uncharacterized conserved protein yqjE CDS COG5393 3241646 3242050 + [S] Predicted membrane protein cds-NP_708907.1 CDS NA 3242040 3242339 + NA 1650 cds-NP_708908.1 CDS COG2259 3242435 3242821 + [S] Predicted membrane protein yqjG CDS COG0435 3242891 3243877 + [O] Predicted glutathione S-transferase 1651 yhaH CDS COG3152 3244170 3244538 + [S] Predicted membrane protein 1652 yhaJ CDS COG0583 3244745 3245641 - [K] Transcriptional regulator 1653 yhaK CDS COG1741 3245746 3246447 + [R] Pirin-related protein yhaL CDS COG1722 3246470 3246634 + [L] Exonuclease VII small subunit 1654 yhaM CDS COG3681 3246846 3248156 - [S] Uncharacterized conserved protein yhaO CDS COG0814 3248184 3249515 - [E] Amino acid permeases 1655 cds-NP_708916.2 CDS COG1760 3249790 3251154 - [E] L-serine deaminase yhaR CDS COG0251 3251226 3251615 - [J] Putative translation initiation inhibitor, yjgF family tdcE CDS COG1882 3251629 3253923 - [C] Pyruvate-formate lyase tdcD CDS COG0282 3253957 3255165 - [C] Acetate kinase tdcC CDS COG0814 3255191 3256522 - [E] Amino acid permeases tdcB CDS COG1171 3256544 3257533 - [E] Threonine dehydratase tdcA CDS COG0583 3257632 3258570 - [K] Transcriptional regulator 1656 tdcR CDS NA 3258760 3259104 + NA 1657 yhaD CDS COG1929 3262118 3263344 - [G] Glycerate kinase yhaE CDS COG2084 3263360 3264259 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 1658 yhaU CDS COG2271 3265066 3266400 - [G] Sugar phosphate permease 1659 yhaG CDS COG2721 3266775 3268346 + [G] Altronate dehydratase 1660 agaR CDS COG1349 3268398 3269222 - [KG] Transcriptional regulators of sugar metabolism 1661 agaZ CDS COG4573 3269471 3270751 + [G] Predicted tagatose 6-phosphate kinase agaV CDS COG3444 3270738 3271247 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB agaW CDS COG3715 3271258 3272037 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC agaE CDS COG3716 3272027 3272836 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID agaF CDS COG2893 3272923 3273357 + [G] Phosphotransferase system, mannose/fructose-specific component IIA agaA CDS COG1820 3273354 3273797 + [G] N-acetylglucosamine-6-phosphate deacetylase insA_55 CDS COG3677 3273826 3274101 + [L] Transposase and inactivated derivatives insB_62 CDS COG1662 3274128 3274523 + [L] Transposase and inactivated derivatives, IS1 family 1662 agaC CDS COG3715 3274778 3275581 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC agaD CDS COG3716 3275571 3276362 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID agaI CDS COG0363 3276363 3277118 + [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 1663 insB_63 CDS COG1662 3277627 3278022 - [L] Transposase and inactivated derivatives, IS1 family insA_56 CDS COG3677 3278049 3278324 - [L] Transposase and inactivated derivatives 1664 cds-YP_008439285.1 CDS COG3121 3278960 3279655 + [NU] P pilus assembly protein, chaperone PapD 1665 cds-NP_708945.3 CDS COG2963 3282283 3282693 - [L] Transposase and inactivated derivatives 1666 yraK CDS COG3539 3283547 3284638 + [NU] P pilus assembly protein, pilin FimA 1667 yraL CDS COG0313 3284681 3285541 - [R] Predicted methyltransferases 1668 yraM CDS COG3107 3285606 3287642 + [R] Putative lipoprotein yraN CDS COG0792 3287600 3287995 + [L] Predicted endonuclease distantly related to archaeal yraO CDS COG0279 3288015 3288605 + [G] Phosphoheptose isomerase yraP CDS COG2823 3288615 3289190 + [R] Predicted periplasmic or secreted lipoprotein 1669 yraQ CDS COG0701 3289304 3290344 - [R] Predicted permeases 1670 yraR CDS ROG6630 3290417 3291097 - NA 1671 yhbO CDS COG0693 3291138 3291698 + [R] Putative intracellular protease/amidase 1672 yhbP CDS COG3787 3291678 3292121 - [S] Uncharacterized protein conserved in bacteria 1673 yhbQ CDS COG2827 3292172 3292474 + [L] Predicted endonuclease containing a URI domain 1674 yhbS CDS COG3153 3292461 3292964 - [R] Predicted acetyltransferase yhbT CDS COG3154 3292958 3293482 - [I] Putative lipid carrier protein 1675 yhbU CDS COG0826 3293691 3294686 + [O] Collagenase and related proteases yhbV CDS NA 3294695 3295573 + NA 1676 yhbW CDS COG2141 3295654 3296661 + [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 1677 mtr CDS COG0814 3296779 3298023 - [E] Amino acid permeases 1678 deaD CDS COG0513 3298177 3300117 - [LKJ] Superfamily II DNA and RNA helicases 1679 yhbM CDS COG4785 3300246 3301130 - [R] Lipoprotein NlpI, contains TPR repeats pnp CDS COG1185 3301239 3303443 - [J] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) rpsO CDS COG0184 3303621 3303890 - [J] Ribosomal protein S15P/S13E truB CDS COG0130 3304039 3304983 - [J] Pseudouridine synthase rbfA CDS COG0858 3304983 3305384 - [J] Ribosome-binding factor A infB CDS COG0532 3305548 3308196 - [J] Translation initiation factor 2 (IF-2; GTPase) nusA CDS COG0195 3308221 3309708 - [K] Transcription elongation factor yhbC CDS COG0779 3309736 3310194 - [S] Uncharacterized protein conserved in bacteria 1680 rna-SF4509 tRNA NA 3310395 3310471 - NA 1681 argG CDS COG0137 3310819 3312162 + [E] Argininosuccinate synthase 1682 rna-SF4510 tRNA NA 3314255 3314341 - NA secG CDS COG1314 3314356 3314688 - [U] Preprotein translocase subunit SecG 1683 glmM CDS COG1109 3314915 3316252 - [G] Phosphomannomutase folP CDS COG0294 3316245 3317138 - [H] Dihydropteroate synthase and related enzymes hflB CDS COG0465 3317183 3319117 - [O] ATP-dependent Zn proteases rrmJ CDS COG0293 3319217 3319846 - [J] 23S rRNA methylase 1684 yhbY CDS COG1534 3319972 3320265 + [J] Predicted RNA-binding protein containing KH domain, 1685 greA CDS COG0782 3320421 3320897 - [K] Transcription elongation factor 1686 dacB CDS COG2027 3321145 3322578 + [M] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 1687 obgE CDS COG0536 3322764 3323936 - [R] Predicted GTPase yhbE CDS COG0697 3323952 3324917 - [GER] Permeases of the drug/metabolite transporter (DMT) 1688 rpmA CDS COG0211 3325044 3325301 - [J] Ribosomal protein L27 rplU CDS COG0261 3325322 3325633 - [J] Ribosomal protein L21 1689 ispB CDS COG0142 3325891 3326862 + [H] Geranylgeranyl pyrophosphate synthase 1690 nlp CDS COG3423 3327089 3327367 + [K] Predicted transcriptional regulator 1691 murA CDS COG0766 3327415 3328674 - [M] UDP-N-acetylglucosamine enolpyruvyl transferase yrbA CDS COG5007 3328729 3328998 - [K] Predicted transcriptional regulator, BolA superfamily yrbB CDS COG3113 3329143 3329436 - [R] Predicted NTP binding protein (contains STAS yrbC CDS COG2854 3329436 3330071 - [Q] ABC-type transport system involved in resistance vpsC CDS COG1463 3330090 3330641 - [Q] ABC-type transport system involved in resistance vpsB CDS COG0767 3330646 3331428 - [Q] ABC-type transport system involved in resistance vpsA CDS COG1127 3331436 3332245 - [Q] ABC-type transport system involved in resistance 1692 yrbG CDS COG0530 3332455 3333420 + [P] Ca2+/Na+ antiporter yrbH CDS COG0794 3333434 3334420 + [M] Predicted sugar phosphate isomerase involved in yrbI CDS COG1778 3334441 3335007 + [R] Low specificity phosphatase (HAD superfamily) yrbK CDS COG3117 3335004 3335579 + [S] Uncharacterized protein conserved in bacteria yhbN CDS COG1934 3335548 3336105 + [S] Uncharacterized protein conserved in bacteria yhbG CDS COG1137 3336112 3336837 + [R] ABC-type (unclassified) transport system, ATPase component rpoN CDS COG1508 3336885 3338318 + [K] DNA-directed RNA polymerase specialized sigma subunit, yhbH CDS COG1544 3338341 3338628 + [J] Ribosome-associated protein Y (PSrp-1) ptsN CDS COG1762 3338746 3339237 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) yhbJ CDS COG1660 3339283 3340137 + [R] Predicted P-loop-containing kinase ptsO CDS COG1925 3340134 3340406 + [G] Phosphotransferase system, HPr-related proteins 1693 yrbL CDS ROG3489 3340619 3341251 + NA 1694 yhbL CDS COG3155 3341972 3342625 - [Q] Uncharacterized protein involved in an early 1695 arcB CDS COG0642 3342855 3345191 - [T] Signal transduction histidine kinase 1696 yhcC CDS COG1242 3345287 3346216 - [R] Predicted Fe-S oxidoreductase 1697 gltB CDS COG0069 3346783 3351351 + [E] Glutamate synthase domain 2 gltD CDS COG0493 3351364 3352782 + [ER] NADPH-dependent glutamate synthase beta chain and 1698 cds-NP_709012.1 CDS COG2963 3353519 3353821 + [L] Transposase and inactivated derivatives cds-NP_709013.1 CDS COG2801 3353857 3354675 + [L] Transposase and inactivated derivatives cds-YP_008439286.1 CDS NA 3354728 3355033 + NA 1699 yhcH CDS COG2731 3355109 3355573 - [G] Beta-galactosidase, beta subunit yhcI CDS COG1940 3355570 3356478 - [KG] Transcriptional regulator/sugar kinase yhcJ CDS COG3010 3356442 3357131 - [G] Putative N-acetylmannosamine-6-phosphate epimerase nanT CDS COG0477 3357179 3358699 - [GEPR] Permeases of the major facilitator superfamily nanA CDS COG0329 3358779 3359672 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase yhcK CDS COG2186 3359794 3360576 - [K] Transcriptional regulators 1700 insA_57 CDS COG3677 3361023 3361298 + [L] Transposase and inactivated derivatives insB_64 CDS COG1662 3361325 3361720 + [L] Transposase and inactivated derivatives, IS1 family 1701 cds-NP_709022.1 CDS NA 3361714 3362142 - NA 1702 insB_65 CDS COG1662 3362217 3362720 + [L] Transposase and inactivated derivatives, IS1 family yhcL CDS COG3069 3362741 3364108 + [C] C4-dicarboxylate transporter 1703 sspB CDS COG2969 3364151 3364648 - [R] Stringent starvation protein B sspA CDS ROG1850 3364654 3365292 - NA 1704 rpsI CDS COG0103 3365687 3366079 - [J] Ribosomal protein S9 rplM CDS COG0102 3366095 3366523 - [J] Ribosomal protein L13 1705 yhcM CDS COG1485 3366742 3367869 - [R] Predicted ATPase 1706 yhcB CDS COG3105 3368063 3368461 + [S] Uncharacterized protein conserved in bacteria 1707 degS CDS COG0265 3370052 3371119 + [O] Trypsin-like serine proteases, typically periplasmic, contain 1708 mdh CDS COG0039 3371181 3372119 - [C] Malate/lactate dehydrogenases 1709 argR CDS COG1438 3372554 3373024 + [K] Arginine repressor 1710 yhcN CDS ROG5490 3373338 3373652 + NA 1711 yhcO CDS COG2732 3373708 3373980 - [K] Barstar, RNAse (barnase) inhibitor 1712 yhcP CDS COG1289 3374072 3376039 - [S] Predicted membrane protein yhcQ CDS COG1566 3376045 3376977 - [V] Multidrug resistance efflux pump cds-YP_008439287.1 CDS ROG4895 3376985 3377257 - NA 1713 yhcS CDS COG0583 3377389 3378300 + [K] Transcriptional regulator 1714 tldD CDS COG0312 3378428 3379873 - [R] Predicted Zn-dependent proteases and their inactivated yhdP CDS COG3164 3380029 3383829 - [S] Predicted membrane protein cafA CDS COG1530 3383897 3385366 - [J] Ribonucleases G and E maf CDS COG0424 3385356 3385949 - [D] Nucleotide-binding protein implicated in inhibition of mreD CDS COG2891 3385958 3386446 - [M] Cell shape-determining protein mreC CDS COG1792 3386446 3387549 - [M] Cell shape-determining protein mreB CDS COG1077 3387615 3388718 - [D] Actin-like ATPase involved in cell morphogenesis 1715 yhdA CDS COG3706 3388963 3390903 - [T] Response regulator containing a CheY-like receiver 1716 yhdH CDS COG0604 3391055 3392029 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 1717 accB CDS COG0511 3393007 3393477 + [I] Biotin carboxyl carrier protein accC CDS COG0439 3393488 3394837 + [I] Biotin carboxylase 1718 yhdT CDS COG3924 3394946 3395188 + [S] Predicted membrane protein panF CDS COG4145 3395178 3396629 + [H] Na+/panthothenate symporter prmA CDS COG2264 3396641 3397522 + [J] Ribosomal protein L11 methylase 1719 yhdG CDS COG0042 3397974 3398816 + [J] tRNA-dihydrouridine synthase fis CDS COG2901 3398842 3399138 + [KL] Factor for inversion stimulation Fis, transcriptional 1720 yhdJ CDS COG0863 3399224 3400108 + [L] DNA modification methylase yhdU CDS NA 3400165 3400392 + NA 1721 insB_66 CDS COG1662 3400386 3400889 - [L] Transposase and inactivated derivatives, IS1 family 1722 cds-NP_709060.1 CDS NA 3400964 3401290 + NA yhdW CDS COG0834 3401319 3402344 + [ET] ABC-type amino acid transport/signal transduction systems, 1723 insB_67 CDS COG1662 3402973 3403368 - [L] Transposase and inactivated derivatives, IS1 family insA_58 CDS COG3677 3403395 3403670 - [L] Transposase and inactivated derivatives 1724 yhdY CDS COG0765 3404368 3405471 + [E] ABC-type amino acid transport system, permease yhdZ CDS COG1126 3405479 3406237 + [E] ABC-type polar amino acid transport system, 1725 rrfF rRNA NA 3406298 3406416 - NA rna-SF4512 tRNA NA 3406455 3406530 - NA rrfD rRNA NA 3406543 3406661 - NA rrlD rRNA NA 3406756 3409659 - NA rna-SF4515 tRNA NA 3409853 3409928 - NA rrsD rRNA NA 3410014 3411555 - NA 1726 yrdA CDS COG0663 3411809 3412579 + [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 1727 yrdB CDS NA 3412555 3412812 - NA aroE_2 CDS COG0169 3412809 3413627 - [E] Shikimate 5-dehydrogenase yrdC CDS COG0009 3413632 3414204 - [J] Putative translation factor (SUA5) yrdD CDS COG0551 3414209 3414727 - [L] Zn-finger domain associated with topoisomerase type smg CDS COG2922 3414780 3415238 - [S] Uncharacterized protein conserved in bacteria smf CDS COG0758 3415225 3416349 - [LU] Predicted Rossmann fold nucleotide-binding protein involved 1728 def CDS COG0242 3416514 3417023 + [J] N-formylmethionyl-tRNA deformylase fmt CDS COG0223 3417038 3417985 + [J] Methionyl-tRNA formyltransferase sun CDS COG0144 3418031 3419320 + [J] tRNA and rRNA cytosine-C5-methylases trkA CDS COG0569 3419342 3420718 + [P] K+ transport systems, NAD-binding component 1729 cds-NP_709078.1 CDS COG2963 3420899 3421573 + [L] Transposase and inactivated derivatives cds-NP_709079.1 CDS COG3436 3421570 3421917 + [L] Transposase and inactivated derivatives cds-NP_709080.1 CDS COG3436 3421937 3423538 + [L] Transposase and inactivated derivatives 1730 rplQ CDS COG0203 3423999 3424382 - [J] Ribosomal protein L17 rpoA CDS COG0202 3424423 3425412 - [K] DNA-directed RNA polymerase, alpha subunit/40 kD rpsD CDS COG0522 3425438 3426046 - [J] Ribosomal protein S4 and related proteins rpsK CDS COG0100 3426092 3426481 - [J] Ribosomal protein S11 rpsM CDS COG0099 3426498 3426854 - [J] Ribosomal protein S13 rpmJ CDS COG0257 3427001 3427117 - [J] Ribosomal protein L36 secY CDS COG0201 3427149 3428480 - [U] Preprotein translocase subunit SecY rplO CDS COG0200 3428488 3428922 - [J] Ribosomal protein L15 rpmD CDS COG1841 3428926 3429105 - [J] Ribosomal protein L30/L7E rpsE CDS COG0098 3429109 3429612 - [J] Ribosomal protein S5 rplR CDS COG0256 3429627 3429980 - [J] Ribosomal protein L18 rplF CDS COG0097 3429990 3430523 - [J] Ribosomal protein L6P/L9E rpsH CDS COG0096 3430536 3430928 - [J] Ribosomal protein S8 rpsN CDS COG0199 3430962 3431267 - [J] Ribosomal protein S14 rplE CDS COG0094 3431282 3431821 - [J] Ribosomal protein L5 rplX CDS COG0198 3431836 3432150 - [J] Ribosomal protein L24 rplN CDS COG0093 3432161 3432532 - [J] Ribosomal protein L14 rpsQ CDS COG0186 3432697 3432951 - [J] Ribosomal protein S17 rpmC CDS COG0255 3432951 3433142 - [J] Ribosomal protein L29 rplP CDS COG0197 3433142 3433552 - [J] Ribosomal protein L16/L10E rpsC CDS COG0092 3433565 3434266 - [J] Ribosomal protein S3 rplV CDS COG0091 3434284 3434616 - [J] Ribosomal protein L22 rpsS CDS COG0185 3434631 3434909 - [J] Ribosomal protein S19 rplB CDS COG0090 3434926 3435747 - [J] Ribosomal protein L2 rplW CDS COG0089 3435765 3436067 - [J] Ribosomal protein L23 rplD CDS COG0088 3436064 3436669 - [J] Ribosomal protein L4 rplC CDS COG0087 3436680 3437309 - [J] Ribosomal protein L3 rpsJ CDS COG0051 3437342 3437653 - [J] Ribosomal protein S10 1731 bfr CDS COG2193 3438496 3438972 - [P] Bacterioferritin (cytochrome b1) yheA CDS COG2906 3439045 3439239 - [P] Bacterioferritin-associated ferredoxin 1732 tuf CDS COG0050 3439422 3440606 - [J] GTPases - translation elongation factors fusA CDS COG0480 3440677 3442791 - [J] Translation elongation factors (GTPases) rpsG CDS COG0049 3442888 3443358 - [J] Ribosomal protein S7 rpsL CDS COG0048 3443455 3443829 - [J] Ribosomal protein S12 1733 yheL CDS COG2168 3443955 3444242 - [P] Uncharacterized conserved protein involved in oxidation yheM CDS COG2923 3444250 3444609 - [P] Uncharacterized protein involved in the oxidation yheN CDS COG1553 3444609 3444995 - [P] Uncharacterized conserved protein involved in intracellular yheO CDS COG2964 3444995 3445717 - [S] Uncharacterized protein conserved in bacteria 1734 fkpA CDS COG0545 3445884 3446696 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 1735 slyX CDS COG2900 3446917 3447135 + [S] Uncharacterized protein conserved in bacteria 1736 slyD CDS COG1047 3447184 3447774 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 1737 yheV CDS COG3529 3447869 3448069 - [R] Predicted nucleic-acid-binding protein containing a Zn-ribbon 1738 yheR CDS COG2249 3449816 3450367 - [R] Putative NADPH-quinone reductase (modulator of drug 1739 yheS CDS COG0488 3450498 3452411 + [R] ATPase components of ABC transporters with yheT CDS COG0429 3452411 3453433 + [R] Predicted hydrolase of the alpha/beta-hydrolase fold yheU CDS COG3089 3453427 3453645 + [S] Uncharacterized protein conserved in bacteria prkB CDS COG3954 3453699 3454568 + [C] Phosphoribulokinase 1740 yhfA CDS COG1765 3454623 3455027 - [O] Predicted redox protein, regulator of disulfide 1741 crp CDS COG0664 3455329 3455961 + [T] cAMP-binding proteins - catabolite gene activator yhfK CDS COG1289 3456012 3458102 + [S] Predicted membrane protein 1742 argD CDS COG4992 3458169 3459389 - [E] Ornithine/acetylornithine aminotransferase pabA CDS COG0512 3459475 3460038 - [EH] Anthranilate/para-aminobenzoate synthases component II fic CDS COG2184 3460070 3460672 - [D] Protein involved in cell division yhfG CDS NA 3460662 3460829 - NA 1743 ppiA CDS COG0652 3460934 3461515 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 1744 yhfC CDS COG0738 3461786 3462967 + [G] Fucose permease 1745 nirB CDS COG1251 3463229 3465772 + [C] NAD(P)H-nitrite reductase nirD CDS COG2146 3465769 3466095 + [PR] Ferredoxin subunits of nitrite reductase and nirC CDS COG2116 3466221 3467027 + [P] Formate/nitrite family of transporters cysG CDS COG0007 3467046 3468419 + [H] Uroporphyrinogen-III methylase 1746 yhfL CDS NA 3468666 3468833 + NA 1747 yhfN CDS COG2222 3470486 3471508 + [M] Predicted phosphosugar isomerases yhfP CDS COG1082 3471558 3472388 + [G] Sugar phosphate isomerases/epimerases yhfQ CDS COG0524 3472385 3473170 + [G] Sugar kinases, ribokinase family yhfR CDS COG2188 3473204 3474001 + [K] Transcriptional regulators 1748 yhfS CDS NA 3474161 3475246 - NA yhfT CDS ROG5012 3475258 3476562 - NA yhfU CDS ROG4472 3476574 3476966 - NA 1749 yhfW CDS COG1015 3477813 3479039 - [G] Phosphopentomutase yhfX CDS COG3457 3479040 3480203 - [E] Predicted amino acid racemase 1750 yhfY CDS ROG7495 3480287 3480691 - NA yhfZ CDS ROG3679 3480666 3481571 - NA 1751 trpS CDS COG0180 3481841 3482845 - [J] Tryptophanyl-tRNA synthetase gph CDS COG0546 3482838 3483596 - [R] Predicted phosphatases rpe CDS COG0036 3483589 3484266 - [G] Pentose-5-phosphate-3-epimerase dam CDS COG0338 3484284 3485120 - [L] Site-specific DNA methylase damX CDS COG3266 3485227 3486519 - [S] Uncharacterized protein conserved in bacteria aroB CDS COG0337 3486611 3487699 - [E] 3-dehydroquinate synthetase aroK CDS COG0703 3487756 3488478 - [E] Shikimate kinase 1752 hofQ CDS COG4796 3488678 3489916 - [U] Type II secretory pathway, component HofQ 1753 yrfB CDS NA 3490224 3490595 - NA yrfC CDS COG3166 3490648 3491187 - [NU] Tfp pilus assembly protein PilN yrfD CDS NA 3491187 3491993 - NA 1754 mrcA CDS COG5009 3492086 3494638 + [M] Membrane carboxypeptidase/penicillin-binding protein 1755 nudE CDS COG0494 3494803 3495363 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1756 yrfF CDS NA 3495683 3497818 + NA yrfG CDS COG1011 3497838 3498551 + [R] Predicted hydrolase (HAD superfamily) yrfH CDS COG1188 3498562 3498963 + [J] Ribosome-associated heat shock protein implicated in hslO CDS COG1281 3498988 3499857 + [O] Disulfide bond chaperones of the HSP33 1757 yhgE CDS ROG0893 3500001 3501725 - NA 1758 cds-NP_709175.1 CDS COG2982 3501801 3501932 - [M] Uncharacterized protein involved in outer membrane 1759 pckA CDS COG1866 3502104 3503726 + [C] Phosphoenolpyruvate carboxykinase (ATP) 1760 envZ CDS COG2205 3503802 3505154 - [T] Osmosensitive K+ channel histidine kinase ompR CDS COG0745 3505151 3505870 - [TK] Response regulators consisting of a CheY-like 1761 greB CDS COG0782 3506062 3506574 + [K] Transcription elongation factor 1762 yhgF CDS COG2183 3506770 3508992 + [K] Transcriptional accessory protein 1763 feoA CDS COG1918 3509430 3509657 + [P] Fe2+ transport system protein A feoB CDS COG0370 3509674 3511995 + [P] Fe2+ transport system protein B yhgG CDS ROG1872 3511995 3512231 + NA 1764 yhgA CDS COG5464 3512434 3513321 + [S] Uncharacterized conserved protein cds-NP_709185.3 CDS COG2963 3513352 3513762 + [L] Transposase and inactivated derivatives cds-NP_709186.1 CDS COG2801 3513720 3514625 + [L] Transposase and inactivated derivatives 1765 cds-NP_709187.1 CDS ROG0259 3514721 3514990 + NA cds-NP_709188.1 CDS COG2337 3514984 3515349 + [T] Growth inhibitor 1766 bioH CDS COG0596 3515350 3516138 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1767 yhgH CDS COG1040 3516128 3516859 + [R] Predicted amidophosphoribosyltransferases yhgI CDS COG0694 3516918 3517493 + [O] Thioredoxin-like proteins and domains 1768 gntT CDS COG2610 3517854 3519170 + [GE] H+/gluconate symporter and related permeases 1769 malQ CDS COG1640 3519215 3521299 - [G] 4-alpha-glucanotransferase malP CDS COG0058 3521309 3523702 - [G] Glucan phosphorylase 1770 yhgJ CDS COG0430 3527051 3527872 - [A] RNA 3'-terminal phosphate cyclase rtcB CDS COG1690 3528071 3529297 - [S] Uncharacterized conserved protein 1771 rtcR CDS COG4650 3529478 3531076 + [KT] Sigma54-dependent transcription regulator containing an AAA-type 1772 glpR CDS COG1349 3531058 3531816 - [KG] Transcriptional regulators of sugar metabolism glpG CDS COG0705 3531833 3532657 - [R] Uncharacterized membrane protein (homolog of Drosophila glpE CDS COG0607 3532708 3533034 - [P] Rhodanese-related sulfurtransferase 1773 glpD CDS COG0578 3533209 3534729 + [C] Glycerol-3-phosphate dehydrogenase 1774 cds-NP_709203.1 CDS COG3385 3535336 3536682 - [L] FOG: Transposase and inactivated derivatives 1775 glgP CDS COG0058 3536782 3539229 - [G] Glucan phosphorylase glgA CDS COG0297 3539248 3540681 - [G] Glycogen synthase glgC CDS COG0448 3540681 3541976 - [G] ADP-glucose pyrophosphorylase glgX CDS COG1523 3541994 3543967 - [G] Type II secretory pathway, pullulanase PulA glgB CDS COG0296 3543964 3546150 - [G] 1,4-alpha-glucan branching enzyme asd CDS COG0136 3546423 3547526 - [E] Aspartate-semialdehyde dehydrogenase 1776 yhgN CDS COG2095 3547718 3548311 + [U] Multiple antibiotic transporter 1777 gntU CDS COG2610 3548368 3549645 - [GE] H+/gluconate symporter and related permeases gntK CDS COG3265 3549712 3550200 - [G] Gluconate kinase 1778 gntR CDS COG1609 3550378 3551316 - [K] Transcriptional regulators 1779 yhhW CDS COG1741 3551597 3552292 - [R] Pirin-related protein 1780 yhhX CDS COG0673 3552415 3553452 - [R] Predicted dehydrogenases and related proteins 1781 yhhY CDS COG0454 3553785 3554273 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1782 ggt CDS COG0405 3554332 3556074 - [E] Gamma-glutamyltransferase 1783 yhhA CDS NA 3556194 3556634 + NA 1784 ugpQ CDS COG0584 3556621 3557364 - [C] Glycerophosphoryl diester phosphodiesterase 1785 cds-NP_709220.1 CDS ROG0762 3558323 3559531 + NA 1786 ugpE CDS COG0395 3559691 3560536 - [G] ABC-type sugar transport system, permease component ugpA CDS COG1175 3560533 3561420 - [G] ABC-type sugar transport systems, permease components ugpB CDS COG1653 3561518 3562834 - [G] ABC-type sugar transport system, periplasmic component 1787 livF CDS COG0410 3563231 3563944 - [E] ABC-type branched-chain amino acid transport systems, livG CDS COG0411 3563946 3564713 - [E] ABC-type branched-chain amino acid transport systems, livM CDS COG4177 3564710 3565987 - [E] ABC-type branched-chain amino acid transport system, livH CDS COG0559 3565984 3566910 - [E] Branched-chain amino acid ABC-type transport system, livK CDS COG0683 3566958 3568067 - [E] ABC-type branched-chain amino acid transport systems, 1788 yhhK CDS NA 3568491 3568874 + NA 1789 livJ CDS COG0683 3569073 3570233 - [E] ABC-type branched-chain amino acid transport systems, 1790 rpoH CDS COG0568 3570447 3571301 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1791 ftsX CDS COG2177 3571546 3572604 - [D] Cell division protein ftsE CDS COG2884 3572597 3573265 - [D] Predicted ATPase involved in cell division ftsY CDS COG0552 3573268 3574764 - [U] Signal recognition particle GTPase 1792 rsmD CDS COG0742 3574914 3575510 + [L] N6-adenine-specific methylase yhhL CDS COG3776 3575500 3575769 + [S] Predicted membrane protein 1793 yhhM CDS ROG6351 3575772 3576131 - NA 1794 yhhN CDS COG3714 3576272 3576898 + [S] Predicted membrane protein 1795 zntA CDS COG2217 3576972 3579170 + [P] Cation transport ATPase 1796 yhhP CDS COG0425 3579272 3579517 - [O] Predicted redox protein, regulator of disulfide 1797 yhhQ CDS COG1738 3579738 3580403 + [S] Uncharacterized conserved protein cds-NP_709242.3 CDS ROG1668 3580422 3581033 + NA 1798 yhhS CDS NA 3581037 3582296 - NA 1799 yhhT CDS COG0628 3582388 3583437 + [R] Predicted permease 1800 yhhU CDS COG2091 3583492 3584079 + [H] Phosphopantetheinyl transferase 1801 nikA CDS COG0747 3584190 3585764 + [E] ABC-type dipeptide transport system, periplasmic component nikB CDS COG0601 3585764 3586708 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components nikC CDS COG1173 3586705 3587538 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components nikD CDS COG1123 3587538 3588302 + [R] ATPase components of various ABC-type transport nikE CDS COG1124 3588299 3589105 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component yhhG CDS COG0864 3589111 3589512 + [K] Predicted transcriptional regulators containing the CopG/Arc/MetJ 1802 cds-NP_709252.2 CDS COG4226 3589632 3589991 - [S] Uncharacterized protein encoded in hypervariable junctions 1803 yhhJ CDS COG0842 3590322 3591446 - [V] ABC-type multidrug transport system, permease component yhiH CDS COG1131 3591446 3594181 - [V] ABC-type multidrug transport system, ATPase component yhiI CDS COG1566 3594178 3595245 - [V] Multidrug resistance efflux pump 1804 yhiJ CDS NA 3595611 3597233 - NA 1805 cds-NP_709257.1 CDS NA 3597495 3599270 - NA 1806 cds-NP_709258.1 CDS NA 3600587 3601102 - NA cds-NP_709259.1 CDS COG3710 3601056 3601820 - [K] DNA-binding winged-HTH domains 1807 cds-NP_709260.1 CDS COG2771 3602066 3602827 + [K] DNA-binding HTH domain-containing proteins 1808 cds-NP_709261.1 CDS NA 3602934 3603446 - NA 1809 cds-NP_709262.1 CDS COG3188 3603585 3604733 - [NU] P pilus assembly protein, porin PapC 1810 cds-NP_709263.3 CDS COG2963 3604780 3605190 + [L] Transposase and inactivated derivatives cds-NP_709264.1 CDS COG2801 3605148 3606053 + [L] Transposase and inactivated derivatives 1811 cds-NP_709265.1 CDS COG3203 3605978 3606865 - [M] Outer membrane protein (porin) 1812 cds-NP_709266.1 CDS COG2963 3606886 3607170 + [L] Transposase and inactivated derivatives cds-NP_709267.1 CDS COG2801 3607227 3608039 + [L] Transposase and inactivated derivatives 1813 cds-NP_709268.1 CDS NA 3608359 3608682 - NA 1814 insB_68 CDS COG1662 3608757 3609260 + [L] Transposase and inactivated derivatives, IS1 family 1815 yhdW_2 CDS COG0834 3609889 3610806 - [ET] ABC-type amino acid transport/signal transduction systems, 1816 cds-NP_709271.1 CDS NA 3610943 3611269 - NA 1817 insB_69 CDS COG1662 3611344 3611847 + [L] Transposase and inactivated derivatives, IS1 family 1818 yhiN CDS COG2081 3612065 3613264 - [R] Predicted flavoproteins 1819 pitA CDS COG0306 3613496 3614995 + [P] Phosphate/sulphate permeases 1820 yhiO CDS NA 3615066 3615401 - NA 1821 uspA CDS COG0589 3615795 3616229 + [T] Universal stress protein UspA and related 1822 yhiQ CDS NA 3618065 3618817 - NA prlC CDS COG0339 3618825 3620867 - [E] Zn-dependent oligopeptidases 1823 yhiR CDS COG2961 3621070 3621912 + [R] Protein involved in catabolism of external 1824 gor CDS COG1249 3621984 3623336 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 1825 insB_70 CDS COG1662 3624249 3624644 - [L] Transposase and inactivated derivatives, IS1 family insA_59 CDS COG3677 3624671 3624946 - [L] Transposase and inactivated derivatives 1826 cds-NP_709283.2 CDS COG0640 3625017 3625346 + [K] Predicted transcriptional regulators arsB CDS COG1055 3625400 3626689 + [P] Na+/H+ antiporter NhaD and related arsenite arsC CDS COG1393 3626702 3627127 + [P] Arsenate reductase and related proteins, glutaredoxin 1827 insB_71 CDS COG1662 3627477 3627980 + [L] Transposase and inactivated derivatives, IS1 family cds-NP_709287.2 CDS COG0701 3628011 3628967 + [R] Predicted permeases 1828 cds-NP_709288.1 CDS NA 3629548 3630771 + NA 1829 slp CDS COG3065 3630985 3631584 + [M] Starvation-inducible outer membrane lipoprotein 1830 yhiF CDS NA 3631740 3632270 + NA 1831 hdeB CDS NA 3633022 3633360 - NA 1832 hdeA CDS ROG0403 3633464 3633796 - NA 1833 hdeD CDS COG3247 3634051 3634623 + [S] Uncharacterized conserved protein 1834 yhiE CDS ROG5730 3635422 3635949 + NA 1835 cds-YP_008439288.1 CDS NA 3635950 3636228 - NA 1836 insB_72 CDS COG1662 3637346 3637741 - [L] Transposase and inactivated derivatives, IS1 family insA_60 CDS COG3677 3637768 3638043 - [L] Transposase and inactivated derivatives 1837 treF CDS COG1626 3638314 3639963 + [G] Neutral trehalase 1838 yhjB CDS COG2197 3641451 3642053 - [TK] Response regulator containing a CheY-like receiver 1839 yhjC CDS COG0583 3642501 3643472 + [K] Transcriptional regulator yhjD CDS COG1295 3643521 3644534 + [S] Predicted membrane protein 1840 yhjE CDS COG0477 3644945 3646267 + [GEPR] Permeases of the major facilitator superfamily 1841 yhjG CDS COG2982 3646449 3648509 - [M] Uncharacterized protein involved in outer membrane 1842 yhjH CDS COG2200 3648579 3649346 - [T] FOG: EAL domain 1843 kdgK CDS COG0524 3649359 3650507 + [G] Sugar kinases, ribokinase family 1844 yhjJ CDS COG0612 3650603 3652099 - [R] Predicted Zn-dependent peptidases 1845 dctA CDS COG1301 3652320 3653606 - [C] Na+/H+-dicarboxylate symporters 1846 yhjK CDS COG2200 3653792 3655741 - [T] FOG: EAL domain 1847 cds-YP_008439289.1 CDS COG3405 3658173 3659279 - [G] Endoglucanase Y yhjN CDS ROG0761 3659286 3661595 - NA 1848 yhjQ CDS COG0455 3664250 3665002 - [D] ATPases involved in chromosome partitioning 1849 insB_73 CDS COG1662 3665176 3665571 - [L] Transposase and inactivated derivatives, IS1 family insA_61 CDS COG3677 3665598 3665873 - [L] Transposase and inactivated derivatives 1850 yhjS CDS NA 3666071 3667642 + NA yhjT CDS NA 3667639 3667830 + NA yhjU CDS ROG4317 3667827 3669506 + NA 1851 cds-NP_709315.1 CDS NA 3669593 3669868 - NA 1852 cds-NP_709316.1 CDS NA 3670076 3670351 - NA 1853 cds-NP_709317.1 CDS NA 3670559 3670801 - NA 1854 yhjV CDS COG0814 3671625 3672896 + [E] Amino acid permeases 1855 dppF CDS COG4608 3672926 3673930 - [E] ABC-type oligopeptide transport system, ATPase component dppD CDS COG0444 3673927 3674910 - [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component dppC CDS COG1173 3674921 3675823 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppB CDS COG0601 3675833 3676852 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppA CDS COG0747 3677160 3678767 - [E] ABC-type dipeptide transport system, periplasmic component 1856 rna-SF4517 tRNA NA 3679679 3679755 - NA 1857 yhjW CDS COG2194 3679847 3681571 - [R] Predicted membrane-associated, metal-dependent hydrolase 1858 yhjX CDS COG2211 3681862 3683070 - [G] Na+/melibiose symporter and related transporters 1859 yhjY CDS COG5571 3683299 3683997 - [N] Autotransporter protein or domain, integral membrane 1860 tag CDS COG2818 3684155 3684718 + [L] 3-methyladenine DNA glycosylase yiaC CDS COG0454 3684715 3685155 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1861 bisC CDS COG0243 3685124 3687403 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1862 yiaD CDS COG2885 3687644 3688270 + [M] Outer membrane protein and related peptidoglycan-associated 1863 yiaE CDS COG1052 3688374 3689348 + [CHR] Lactate dehydrogenase and related dehydrogenases 1864 yiaF CDS NA 3689398 3690228 - NA 1865 cspA CDS COG1278 3691113 3691325 + [K] Cold shock proteins 1866 cds-NP_709334.1 CDS COG2801 3691766 3692617 - [L] Transposase and inactivated derivatives cds-NP_709335.1 CDS COG2963 3692614 3693282 - [L] Transposase and inactivated derivatives 1867 insB_74 CDS COG1662 3693357 3693860 + [L] Transposase and inactivated derivatives, IS1 family 1868 yhjA CDS COG1858 3693919 3695316 + [P] Cytochrome c peroxidase 1869 gadA CDS COG0076 3695527 3696927 + [E] Glutamate decarboxylase and related PLP-dependent proteins 1870 yhiX CDS COG2207 3697297 3698121 + [K] AraC-type DNA-binding domain-containing proteins yhiW CDS COG2207 3698489 3699217 + [K] AraC-type DNA-binding domain-containing proteins 1871 insA_62 CDS COG3677 3703235 3703510 + [L] Transposase and inactivated derivatives insB_75 CDS COG1662 3703537 3703932 + [L] Transposase and inactivated derivatives, IS1 family 1872 glyS CDS COG0751 3703990 3706059 - [J] Glycyl-tRNA synthetase, beta subunit glyQ CDS COG0752 3706069 3706980 - [J] Glycyl-tRNA synthetase, alpha subunit 1873 cds-NP_709347.1 CDS COG5633 3707075 3707374 - [R] Predicted periplasmic lipoprotein 1874 yiaH CDS COG3274 3707549 3708544 + [S] Uncharacterized protein conserved in bacteria 1875 yiaA CDS COG4682 3708586 3709023 - [S] Predicted membrane protein yiaB CDS COG4682 3709069 3709410 - [S] Predicted membrane protein 1876 xylB CDS COG1070 3709579 3711033 - [G] Sugar (pentulose and hexulose) kinases 1877 xylF CDS COG4213 3712793 3713785 + [G] ABC-type xylose transport system, periplasmic component xylG CDS COG1129 3713863 3715404 + [G] ABC-type sugar transport system, ATPase component xylH CDS COG4214 3715382 3716563 + [G] ABC-type xylose transport system, permease component 1878 bax CDS COG2992 3717927 3718751 - [R] Uncharacterized FlgJ-related protein 1879 malS CDS COG0366 3719071 3721101 + [G] Glycosidases 1880 avtA CDS COG3977 3721279 3722532 + [E] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase 1881 yiaI CDS COG1142 3722683 3723156 - [C] Fe-S-cluster-containing hydrogenase components 2 1882 yiaJ CDS COG1414 3723258 3724106 - [K] Transcriptional regulator 1883 yiaK CDS COG2055 3724306 3725304 + [C] Malate/L-lactate dehydrogenases 1884 insA_63 CDS COG3677 3725519 3725794 + [L] Transposase and inactivated derivatives insB_76 CDS COG1662 3725821 3726216 + [L] Transposase and inactivated derivatives, IS1 family 1885 cds-NP_709363.1 CDS COG1593 3726550 3727842 + [G] TRAP-type C4-dicarboxylate transport system, large permease insA_64 CDS COG3677 3727876 3728151 + [L] Transposase and inactivated derivatives insB_77 CDS COG1662 3728178 3728573 + [L] Transposase and inactivated derivatives, IS1 family 1886 cds-YP_008439290.1 CDS NA 3728838 3729050 + NA 1887 aldB CDS COG1012 3729269 3730897 - [C] NAD-dependent aldehyde dehydrogenases yiaY CDS COG1454 3730972 3732123 - [C] Alcohol dehydrogenase, class IV 1888 selB CDS COG3276 3732313 3734157 - [J] Selenocysteine-specific translation elongation factor selA CDS COG1921 3734154 3735545 - [E] Selenocysteine synthase [seryl-tRNASer selenium transferase] 1889 yibF CDS ROG5032 3735643 3736251 - NA 1890 yibH CDS COG1566 3736322 3737407 - [V] Multidrug resistance efflux pump yibI CDS ROG2279 3737410 3737772 - NA 1891 mtlA CDS COG2213 3738309 3740222 + [G] Phosphotransferase system, mannitol-specific IIBC component mtlD CDS COG0246 3740317 3741465 + [G] Mannitol-1-phosphate/altronate dehydrogenases mtlR CDS COG3722 3741465 3742052 + [K] Transcriptional regulator 1892 cds-YP_008439291.1 CDS NA 3742064 3742273 - NA 1893 yibL CDS ROG8523 3742557 3742919 + NA 1894 insB_78 CDS COG1662 3743038 3743433 - [L] Transposase and inactivated derivatives, IS1 family insA_65 CDS COG3677 3743460 3743735 - [L] Transposase and inactivated derivatives 1895 cds-NP_709379.1 CDS NA 3744374 3744922 + NA cds-NP_709380.1 CDS COG5295 3744966 3746114 + [UW] Autotransporter adhesin 1896 cds-NP_709381.1 CDS COG5295 3746656 3749628 + [UW] Autotransporter adhesin 1897 lldP CDS COG1620 3749996 3751651 + [C] L-lactate permease lldR CDS COG2186 3751651 3752427 + [K] Transcriptional regulators lldD CDS COG1304 3752424 3753614 + [C] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy yibK CDS COG0219 3753810 3754283 + [J] Predicted rRNA methylase (SpoU class) 1898 cysE CDS COG1045 3754336 3755157 - [E] Serine acetyltransferase gpsA CDS COG0240 3755237 3756256 - [C] Glycerol-3-phosphate dehydrogenase secB CDS COG1952 3756256 3756723 - [U] Preprotein translocase subunit SecB grxC CDS COG0695 3756786 3757037 - [O] Glutaredoxin and related proteins yibN CDS COG0607 3757179 3757610 - [P] Rhodanese-related sulfurtransferase 1899 yibO CDS COG0696 3757855 3759399 + [G] Phosphoglyceromutase yibP CDS COG4942 3759433 3760692 + [D] Membrane-bound metallopeptidase yibQ CDS COG2861 3760822 3761655 + [S] Uncharacterized protein conserved in bacteria 1900 insB_79 CDS COG1662 3761864 3762259 - [L] Transposase and inactivated derivatives, IS1 family insA_66 CDS COG3677 3762286 3762561 - [L] Transposase and inactivated derivatives 1901 tdh CDS COG1063 3762791 3763816 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases kbl CDS COG0156 3763826 3765022 - [H] 7-keto-8-aminopelargonate synthetase and related enzymes 1902 htrL CDS NA 3765297 3766154 - NA 1903 rfaD CDS COG0451 3766458 3767390 + [MG] Nucleoside-diphosphate-sugar epimerases rfaF CDS COG0859 3767400 3768446 + [M] ADP-heptose:LPS heptosyltransferase rfaC CDS COG0859 3768480 3769442 + [M] ADP-heptose:LPS heptosyltransferase waaI CDS COG3307 3769439 3770647 + [M] Lipid A core - O-antigen ligase 1904 waaD CDS COG0438 3770683 3771825 - [M] Glycosyltransferase waaJ CDS COG1442 3771834 3772847 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases waaY CDS ROG3683 3772872 3773579 - NA waaL CDS COG1442 3773605 3774612 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases waaP CDS ROG1796 3774655 3775461 - NA waaG CDS COG0438 3775445 3776569 - [M] Glycosyltransferase waaQ CDS COG0859 3776566 3777624 - [M] ADP-heptose:LPS heptosyltransferase 1905 insB_80 CDS COG1662 3777982 3778377 - [L] Transposase and inactivated derivatives, IS1 family insA_67 CDS COG3677 3778404 3778679 - [L] Transposase and inactivated derivatives 1906 kdtA CDS COG1519 3778853 3780130 + [M] 3-deoxy-D-manno-octulosonic-acid transferase coaD CDS COG0669 3780138 3780617 + [H] Phosphopantetheine adenylyltransferase 1907 mutM CDS COG0266 3780656 3781465 - [L] Formamidopyrimidine-DNA glycosylase rpmG CDS COG0267 3781563 3781730 - [J] Ribosomal protein L33 rpmB CDS COG0227 3781751 3781987 - [J] Ribosomal protein L28 radC CDS COG2003 3782204 3782872 - [L] DNA repair proteins 1908 dfp CDS COG0452 3782972 3784264 + [H] Phosphopantothenoylcysteine synthetase/decarboxylase dut CDS COG0756 3784242 3784700 + [F] dUTPase ttk CDS COG1309 3784765 3785403 + [K] Transcriptional regulator 1909 pyrE CDS COG0461 3785440 3786081 - [F] Orotate phosphoribosyltransferase rph CDS COG0689 3786147 3786863 - [J] RNase PH 1910 yicC CDS COG1561 3786990 3787853 + [S] Uncharacterized stress-induced protein 1911 dinD CDS ROG0424 3788074 3788898 + NA 1912 yicG CDS COG2860 3789135 3789806 + [S] Predicted membrane protein 1913 ligB CDS COG0272 3789803 3791485 - [L] NAD-dependent DNA ligase (contains BRCT domain cds-NP_709427.1 CDS NA 3791346 3791609 - NA 1914 gmk CDS COG0194 3791743 3792366 + [F] Guanylate kinase rpoZ CDS COG1758 3792421 3792696 + [K] DNA-directed RNA polymerase, subunit K/omega spoT CDS COG0317 3792715 3794823 + [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases spoU CDS COG0566 3794830 3795519 + [J] rRNA methylases recG CDS COG1200 3795525 3797606 + [LK] RecG-like helicase 1915 gltS CDS COG0786 3797640 3798845 - [E] Na+/glutamate symporter 1916 yicE CDS COG2233 3799125 3800516 + [F] Xanthine/uracil permeases 1917 yicH CDS NA 3800637 3802346 + NA 1918 yicI CDS COG1501 3802399 3804717 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases 1919 rna-SF4518 tRNA NA 3806403 3806493 + NA 1920 cds-NP_709437.1 CDS COG0582 3806769 3807980 + [L] Integrase 1921 shiA CDS COG4235 3808392 3809435 + [O] Cytochrome c biogenesis factor 1922 shiB CDS NA 3809950 3810411 + NA 1923 cds-NP_709442.1 CDS COG2963 3811260 3811559 - [L] Transposase and inactivated derivatives 1924 cds-NP_709445.1 CDS COG2963 3813226 3813552 - [L] Transposase and inactivated derivatives 1925 cds-NP_709446.1 CDS NA 3814222 3814494 - NA cds-NP_709447.1 CDS COG2801 3814555 3815460 - [L] Transposase and inactivated derivatives cds-NP_709448.3 CDS COG2963 3815418 3815828 - [L] Transposase and inactivated derivatives 1926 cds-NP_709449.1 CDS NA 3816150 3816344 + NA 1927 insB_81 CDS COG1662 3818021 3818524 - [L] Transposase and inactivated derivatives, IS1 family 1928 shiE CDS ROG0068 3818599 3819570 + NA 1929 imm CDS NA 3819520 3820713 - NA 1930 iucA CDS COG4264 3820792 3822573 + [Q] Siderophore synthetase component iucB CDS NA 3822574 3823521 + NA iucC CDS COG4264 3823521 3825263 + [Q] Siderophore synthetase component iucD CDS COG3486 3825260 3826597 + [Q] Lysine/ornithine N-monooxygenase iutA CDS COG1629 3826603 3828798 + [P] Outer membrane receptor proteins, mostly Fe 1931 cds-NP_709459.1 CDS NA 3829719 3830477 + NA 1932 cds-NP_709460.1 CDS COG2801 3830448 3831353 - [L] Transposase and inactivated derivatives cds-NP_709461.3 CDS COG2963 3831311 3831721 - [L] Transposase and inactivated derivatives 1933 lpfC CDS COG3188 3831822 3834344 + [NU] P pilus assembly protein, porin PapC 1934 insB_82 CDS COG1662 3834502 3834897 - [L] Transposase and inactivated derivatives, IS1 family insA_68 CDS COG3677 3834924 3835199 - [L] Transposase and inactivated derivatives 1935 cds-NP_709465.1 CDS COG3539 3835510 3836205 + [NU] P pilus assembly protein, pilin FimA 1936 pstS CDS COG0226 3836453 3837493 + [P] ABC-type phosphate transport system, periplasmic component pstC CDS COG0573 3837640 3838539 + [P] ABC-type phosphate transport system, permease component pstA CDS COG0581 3838539 3839429 + [P] ABC-type phosphate transport system, permease component pstB CDS COG1117 3839521 3840294 + [P] ABC-type phosphate transport system, ATPase component phoU CDS COG0704 3840309 3841034 + [P] Phosphate uptake regulator 1937 bglG CDS COG3711 3841321 3842142 + [K] Transcriptional antiterminator bglF CDS COG2190 3842276 3844153 + [G] Phosphotransferase system IIA components 1938 insA_69 CDS COG3677 3845255 3845530 + [L] Transposase and inactivated derivatives insB_83 CDS COG1662 3845557 3845952 + [L] Transposase and inactivated derivatives, IS1 family 1939 yieC CDS COG4580 3846467 3848044 + [G] Maltoporin (phage lambda and maltose receptor) yieL CDS COG2382 3848071 3849246 + [P] Enterochelin esterase and related enzymes yieK CDS COG0363 3849248 3849970 + [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 1940 cds-NP_709479.1 CDS COG3436 3851559 3851906 - [L] Transposase and inactivated derivatives cds-NP_709480.1 CDS COG2963 3851903 3852577 - [L] Transposase and inactivated derivatives 1941 yieI CDS NA 3852745 3853218 - NA 1942 yieH CDS COG0637 3853285 3853941 - [R] Predicted phosphatase/phosphohexomutase 1943 yieG CDS COG2252 3854106 3855443 + [R] Permeases 1944 yieF CDS COG0431 3855497 3856063 - [R] Predicted flavoprotein yieE CDS COG2091 3856085 3856834 - [H] Phosphopantetheinyl transferase 1945 cds-NP_709486.1 CDS COG2963 3857369 3857671 + [L] Transposase and inactivated derivatives cds-NP_709487.1 CDS COG2801 3857707 3858525 + [L] Transposase and inactivated derivatives 1946 yidY CDS NA 3859192 3860367 - NA 1947 tnaB CDS COG0814 3860499 3861746 - [E] Amino acid permeases tnaA CDS COG3033 3861837 3863252 - [E] Tryptophanase 1948 tnaL CDS NA 3863473 3863547 - NA 1949 insA_70 CDS COG3677 3863654 3863929 + [L] Transposase and inactivated derivatives insB_84 CDS COG1662 3863956 3864351 + [L] Transposase and inactivated derivatives, IS1 family 1950 trmE CDS COG0486 3864566 3865930 - [R] Predicted GTPase yidC CDS COG0706 3866036 3867682 - [U] Preprotein translocase subunit YidC rnpA CDS COG0594 3867906 3868265 - [J] RNase P protein component rpmH CDS ROG3844 3868282 3868422 - NA 1951 dnaN CDS COG0592 3870435 3871535 + [L] DNA polymerase sliding clamp subunit (PCNA recF CDS COG1195 3871535 3872608 + [L] Recombinational DNA repair ATPase (RecF pathway) gyrB CDS COG0187 3872637 3875051 + [L] Type IIA topoisomerase (DNA gyrase/topo II, 1952 yidB CDS COG3753 3875291 3875689 + [S] Uncharacterized protein conserved in bacteria 1953 yidA CDS COG0561 3875803 3876615 + [R] Predicted hydrolases of the HAD superfamily 1954 cds-NP_709504.1 CDS NA 3876661 3877317 - NA 1955 yidW CDS COG2186 3877595 3878284 + [K] Transcriptional regulators dgoK CDS COG3734 3878281 3879159 + [G] 2-keto-3-deoxy-galactonokinase 1956 dgoT CDS COG2271 3880980 3882317 + [G] Sugar phosphate permease 1957 yidS CDS COG0644 3882278 3883378 - [C] Dehydrogenases (flavoproteins) 1958 yidR CDS COG1506 3883443 3884717 + [E] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 1959 yidQ CDS COG5645 3884719 3885126 - [R] Predicted periplasmic lipoprotein 1960 ibpA CDS COG0071 3885356 3885769 + [O] Molecular chaperone (small heat shock protein) ibpB CDS COG0071 3885881 3886309 + [O] Molecular chaperone (small heat shock protein) 1961 cds-YP_008439292.1 CDS NA 3886314 3886475 - NA 1962 yidE CDS COG2985 3886505 3888166 + [R] Predicted permease 1963 yidP CDS COG2188 3888205 3888879 - [K] Transcriptional regulators 1964 glvB CDS COG1263 3889174 3890790 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 1965 yidL CDS COG2207 3891601 3892494 - [K] AraC-type DNA-binding domain-containing proteins 1966 yidK CDS COG4146 3892661 3894376 + [R] Predicted symporter 1967 yidI CDS COG2610 3895900 3896313 - [GE] H+/gluconate symporter and related permeases 1968 yidH CDS COG2149 3896422 3896769 + [S] Predicted membrane protein yidG CDS NA 3896759 3897121 + NA yidF CDS COG0641 3897118 3897615 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 1969 emrD CDS COG0477 3897623 3898675 - [GEPR] Permeases of the major facilitator superfamily 1970 ilvB CDS COG0028 3898736 3900334 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvN CDS COG0440 3900338 3900628 + [E] Acetolactate synthase, small (regulatory) subunit uhpA CDS COG2197 3900703 3901293 + [TK] Response regulator containing a CheY-like receiver uhpB CDS COG3851 3901293 3902795 + [T] Signal transduction histidine kinase, glucose-6-phosphate specific uhpC CDS COG2271 3902805 3904124 + [G] Sugar phosphate permease uhpT CDS COG2271 3904262 3905653 + [G] Sugar phosphate permease 1971 yicP CDS COG1001 3905699 3907465 - [F] Adenine deaminase 1972 yicO CDS COG2252 3907562 3908974 + [R] Permeases yicN CDS NA 3909000 3909479 + NA yicM CDS COG2814 3909525 3910880 + [G] Arabinose efflux permease 1973 cds-NP_709533.1 CDS NA 3910921 3911214 - NA 1974 cds-NP_709534.1 CDS COG2963 3911469 3911771 + [L] Transposase and inactivated derivatives cds-NP_709535.1 CDS COG2801 3911807 3912625 + [L] Transposase and inactivated derivatives 1975 cds-NP_709537.1 CDS COG3468 3913710 3914699 - [MU] Type V secretory pathway, adhesin AidA 1976 cds-NP_709538.3 CDS COG2963 3914756 3915166 + [L] Transposase and inactivated derivatives cds-NP_709539.1 CDS COG2801 3915124 3916029 + [L] Transposase and inactivated derivatives 1977 lpfA CDS COG3539 3916795 3917367 - [NU] P pilus assembly protein, pilin FimA 1978 cds-NP_709541.1 CDS COG3385 3917659 3919005 - [L] FOG: Transposase and inactivated derivatives glmS CDS COG0449 3919108 3920937 - [M] Glucosamine 6-phosphate synthetase, contains amidotransferase and glmU CDS COG1207 3921099 3922469 - [M] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch atpC CDS COG0355 3922820 3923233 - [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial atpD CDS COG0055 3923260 3924642 - [C] F0F1-type ATP synthase, beta subunit atpG CDS COG0224 3924669 3925532 - [C] F0F1-type ATP synthase, gamma subunit atpA CDS COG0056 3925583 3927124 - [C] F0F1-type ATP synthase, alpha subunit atpH CDS COG0712 3927137 3927670 - [C] F0F1-type ATP synthase, delta subunit (mitochondrial atpF CDS COG0711 3927685 3928155 - [C] F0F1-type ATP synthase, subunit b atpE CDS COG0636 3928217 3928456 - [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, atpB CDS COG0356 3928503 3929318 - [C] F0F1-type ATP synthase, subunit a atpI CDS COG3312 3929327 3929719 - [C] F0F1-type ATP synthase, subunit I 1979 gidB CDS COG0357 3930324 3930947 - [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial gidA CDS COG0445 3931011 3932900 - [D] NAD/FAD-utilizing enzyme apparently involved in cell 1980 mioC CDS COG0716 3933279 3933722 - [C] Flavodoxins 1981 asnC_2 CDS COG1522 3933812 3934270 - [K] Transcriptional regulators 1982 asnA CDS COG2502 3934422 3935414 + [E] Asparagine synthetase A 1983 yieM CDS COG2425 3935419 3936870 - [R] Uncharacterized protein containing a von Willebrand yieN CDS NA 3936864 3938384 - NA 1984 cds-NP_709560.1 CDS COG3385 3938516 3939862 + [L] FOG: Transposase and inactivated derivatives 1985 trkD CDS COG3158 3940020 3941888 + [P] K+ transporter 1986 rbsD CDS COG1869 3942055 3942474 + [G] ABC-type ribose transport system, auxiliary component 1987 insA_71 CDS COG3677 3942889 3943164 + [L] Transposase and inactivated derivatives insB_85 CDS COG1662 3943191 3943586 + [L] Transposase and inactivated derivatives, IS1 family 1988 rbsC CDS COG1172 3944768 3945733 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 1989 rbsK CDS COG0524 3946759 3947703 + [G] Sugar kinases, ribokinase family rbsR CDS COG1609 3947716 3948699 + [K] Transcriptional regulators 1990 yieO CDS ROG2472 3948665 3950068 - NA yieP CDS COG2186 3950115 3950807 - [K] Transcriptional regulators 1991 rrsC rRNA NA 3951290 3952831 + NA rna-SF4564 tRNA NA 3952917 3952992 + NA rrlC rRNA NA 3953186 3956089 + NA rrfC rRNA NA 3956184 3956302 + NA rna-SF4523 tRNA NA 3956355 3956431 + NA rna-SF4524 tRNA NA 3956440 3956515 + NA 1992 yifA CDS COG0583 3956611 3957450 - [K] Transcriptional regulator 1993 yifE CDS COG3085 3957569 3957907 + [S] Uncharacterized protein conserved in bacteria 1994 ilvL CDS NA 3959763 3959861 + NA 1995 ilvG CDS COG0028 3960000 3961646 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvM CDS COG3978 3961646 3961906 + [S] Acetolactate synthase (isozyme II), small (regulatory) ilvE CDS COG0115 3961926 3962855 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ilvD CDS COG0129 3962920 3964770 + [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase ilvA CDS COG1171 3964773 3966317 + [E] Threonine dehydratase 1996 ilvY CDS COG0583 3966314 3967204 - [K] Transcriptional regulator 1997 ilvC CDS COG0059 3967354 3968829 + [EH] Ketol-acid reductoisomerase 1998 ppiC CDS COG0760 3968875 3969156 - [O] Parvulin-like peptidyl-prolyl isomerase 1999 rep CDS COG0210 3969243 3971264 + [L] Superfamily I DNA and RNA helicases 2000 gppA CDS COG0248 3971311 3972795 - [FP] Exopolyphosphatase rhlB CDS COG0513 3972929 3974194 - [LKJ] Superfamily II DNA and RNA helicases 2001 trxA CDS COG0526 3974271 3974654 + [OC] Thiol-disulfide isomerase and thioredoxins 2002 rhoL CDS NA 3974795 3974896 + NA 2003 rho CDS COG1158 3974981 3976240 + [K] Transcription termination factor cds-NP_709587.1 CDS NA 3976250 3976468 + NA rfe CDS NA 3976480 3977583 + NA wzzE CDS COG3765 3977595 3978641 + [M] Chain length determinant protein wecB CDS COG0381 3978655 3979827 + [M] UDP-N-acetylglucosamine 2-epimerase wecC CDS COG0677 3979824 3981086 + [M] UDP-N-acetyl-D-mannosaminuronate dehydrogenase rffG CDS COG1088 3981086 3982153 + [M] dTDP-D-glucose 4,6-dehydratase rffH CDS COG1209 3982172 3983053 + [M] dTDP-glucose pyrophosphorylase 2004 wecD CDS COG0454 3983160 3983705 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases wecE CDS COG0399 3983710 3984840 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved wzxE CDS COG2244 3984842 3986092 + [R] Membrane protein involved in the export yifM CDS ROG4451 3986089 3987168 + NA wecF CDS NA 3987165 3988517 + NA wecG CDS COG1922 3988520 3989260 + [M] Teichoic acid biosynthesis proteins 2005 rna-SF4525 tRNA NA 3990938 3991014 + NA rna-SF4526 tRNA NA 3991073 3991148 + NA rna-SF4527 tRNA NA 3991169 3991255 + NA rna-SF4528 tRNA NA 3991298 3991374 + NA 2006 aslB CDS COG0641 3991521 3992756 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 2007 cds-NP_709602.1 CDS COG2801 3992926 3993831 - [L] Transposase and inactivated derivatives cds-NP_709603.3 CDS COG2963 3993789 3994199 - [L] Transposase and inactivated derivatives 2008 hemY CDS COG3071 3995016 3996212 - [H] Uncharacterized enzyme of heme biosynthesis hemX CDS COG2959 3996215 3997432 - [H] Uncharacterized enzyme of heme biosynthesis hemD CDS COG1587 3997454 3998194 - [H] Uroporphyrinogen-III synthase hemC CDS COG0181 3998191 3999132 - [H] Porphobilinogen deaminase 2009 cyaA CDS COG3072 3999519 4002065 + [F] Adenylate cyclase 2010 cyaY CDS COG1965 4002105 4002425 - [P] Protein implicated in iron transport, frataxin 2011 insA_72 CDS COG3677 4002954 4003229 + [L] Transposase and inactivated derivatives insB_86 CDS COG1662 4003256 4003651 + [L] Transposase and inactivated derivatives, IS1 family 2012 cds-NP_709612.1 CDS NA 4003586 4004563 - NA 2013 yifL CDS COG5567 4006227 4006430 + [N] Predicted small periplasmic lipoprotein dapF CDS COG0253 4006464 4007291 + [E] Diaminopimelate epimerase yigA CDS COG3159 4007288 4007995 + [S] Uncharacterized protein conserved in bacteria xerC CDS COG4973 4007992 4008888 + [L] Site-specific recombinase XerC yigB CDS COG1011 4008888 4009604 + [R] Predicted hydrolase (HAD superfamily) uvrD CDS COG0210 4009688 4011850 + [L] Superfamily I DNA and RNA helicases 2014 cds-NP_709621.1 CDS COG3385 4012504 4013850 + [L] FOG: Transposase and inactivated derivatives 2015 corA CDS COG0598 4014569 4015519 + [P] Mg2+ and Co2+ transporters 2016 yigF CDS ROG4207 4015560 4015940 - NA yigG CDS NA 4015954 4016370 - NA rarD CDS COG2962 4016429 4017319 - [R] Predicted permeases yigI CDS COG2050 4017371 4017856 - [Q] Uncharacterized protein, possibly involved in aromatic 2017 pldA CDS COG2829 4018003 4018872 + [M] Outer membrane phospholipase A 2018 recQ CDS COG0514 4018999 4020834 + [L] Superfamily II DNA helicase 2019 yigJ CDS COG1280 4020898 4021518 + [E] Putative threonine efflux protein 2020 yigK CDS COG1280 4021580 4022200 - [E] Putative threonine efflux protein 2021 pldB CDS COG2267 4022311 4023333 + [I] Lysophospholipase yigL CDS COG0561 4023341 4024141 + [R] Predicted hydrolases of the HAD superfamily yigM CDS COG0697 4024217 4025116 + [GER] Permeases of the drug/metabolite transporter (DMT) 2022 metR CDS COG0583 4025004 4025957 - [K] Transcriptional regulator 2023 metE CDS COG0620 4026193 4028454 + [E] Methionine synthase II (cobalamin-independent) 2024 cds-NP_709636.1 CDS COG0412 4028493 4029374 - [Q] Dienelactone hydrolase and related enzymes 2025 udp CDS COG2820 4029570 4030331 + [F] Uridine phosphorylase 2026 yigN CDS COG1322 4030487 4031899 + [S] Uncharacterized protein conserved in bacteria 2027 ubiE CDS COG2226 4031994 4032749 + [H] Methylase involved in ubiquinone/menaquinone biosynthesis yigP CDS COG3165 4032763 4033368 + [S] Uncharacterized protein conserved in bacteria ubiB CDS COG0661 4033365 4035005 + [R] Predicted unusual protein kinase tatA CDS COG1826 4035042 4035353 + [U] Sec-independent protein secretion pathway components cds-NP_709643.1 CDS COG1826 4035357 4035872 + [U] Sec-independent protein secretion pathway components yigU CDS COG0805 4035875 4036651 + [U] Sec-independent protein secretion pathway component TatC yigW CDS COG0084 4036693 4037475 + [L] Mg-dependent DNase 2028 rfaH CDS COG0250 4037472 4037960 - [K] Transcription antiterminator 2029 yigC CDS COG0043 4038127 4039620 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases fre CDS COG0543 4039666 4040367 + [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 2030 fadA CDS COG0183 4040559 4041722 - [I] Acetyl-CoA acetyltransferase fadB CDS COG1250 4041732 4043921 - [I] 3-hydroxyacyl-CoA dehydrogenase 2031 pepQ CDS COG0006 4044111 4045442 + [E] Xaa-Pro aminopeptidase yigZ CDS COG1739 4045442 4046056 + [S] Uncharacterized conserved protein trkH CDS COG0168 4046095 4047546 + [P] Trk-type K+ transport systems, membrane components hemG CDS COG4635 4047558 4048103 + [CH] Flavodoxin 2032 rrsA rRNA NA 4048481 4050022 + NA rna-SF4530 tRNA NA 4050108 4050183 + NA rrlA rRNA NA 4050377 4053280 + NA rrfA rRNA NA 4053375 4053493 + NA 2033 mobB CDS COG1763 4053593 4054120 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein mobA CDS COG0746 4054102 4054686 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein A 2034 yihD CDS COG3084 4054756 4055025 + [S] Uncharacterized protein conserved in bacteria yihE CDS COG2334 4055102 4056088 + [R] Putative homoserine kinase type II (protein dsbA CDS COG1651 4056105 4056731 + [O] Protein-disulfide isomerase 2035 yihF CDS COG5339 4056844 4058316 + [S] Uncharacterized protein conserved in bacteria 2036 yihG CDS COG0204 4058357 4059289 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 2037 cds-YP_008439293.1 CDS NA 4059409 4059651 - NA 2038 polA CDS COG0749 4059653 4062439 + [L] DNA polymerase I - 3'-5' exonuclease 2039 yihA CDS COG0218 4062821 4063417 - [R] Predicted GTPase 2040 yihI CDS COG3078 4064035 4064544 + [S] Uncharacterized protein conserved in bacteria 2041 hemN CDS COG0635 4064733 4066106 + [H] Coproporphyrinogen III oxidase and related Fe-S 2042 glnG CDS COG2204 4066557 4067966 - [T] Response regulator containing CheY-like receiver, AAA-type glnL CDS COG3852 4067978 4069027 - [T] Signal transduction histidine kinase, nitrogen specific glnA CDS COG0174 4069200 4070609 - [E] Glutamine synthetase 2043 yihK CDS COG1217 4070982 4072805 + [T] Predicted membrane GTPase involved in stress 2044 yihL CDS COG2188 4073022 4073732 + [K] Transcriptional regulators yihM CDS ROG6879 4073740 4074720 + NA 2045 yihN CDS ROG5427 4074822 4075880 + NA insA_73 CDS COG3677 4075909 4076184 + [L] Transposase and inactivated derivatives insB_87 CDS COG1662 4076211 4076606 + [L] Transposase and inactivated derivatives, IS1 family 2046 cds-NP_709675.1 CDS NA 4076600 4076986 - NA yihO CDS COG2211 4077018 4078421 - [G] Na+/melibiose symporter and related transporters 2047 yihQ CDS COG1501 4079884 4081920 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases yihR CDS COG2017 4082119 4083021 - [G] Galactose mutarotase and related enzymes yihS CDS COG2942 4083159 4084400 - [G] N-acyl-D-glucosamine 2-epimerase yihT CDS COG3684 4084417 4085295 - [G] Tagatose-1,6-bisphosphate aldolase yihU CDS COG2084 4085319 4086215 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 2048 yihV CDS COG0524 4086383 4087279 + [G] Sugar kinases, ribokinase family yihW CDS COG1349 4087313 4088098 + [KG] Transcriptional regulators of sugar metabolism 2049 yihX CDS COG1011 4088197 4088796 + [R] Predicted hydrolase (HAD superfamily) rbn CDS COG1295 4088790 4089662 + [S] Predicted membrane protein yihZ CDS COG1490 4089659 4090096 + [J] D-Tyr-tRNAtyr deacylase yiiD CDS COG0454 4090093 4091082 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2050 insB_88 CDS COG1662 4091624 4092019 - [L] Transposase and inactivated derivatives, IS1 family insA_74 CDS COG3677 4092046 4092321 - [L] Transposase and inactivated derivatives 2051 yiiE CDS ROG5008 4094673 4094918 + NA yiiF CDS ROG5008 4095136 4095378 + NA 2052 fdhE CDS COG3058 4095708 4096637 - [O] Uncharacterized protein involved in formate dehydrogenase fdoI CDS COG2864 4096634 4097269 - [C] Cytochrome b subunit of formate dehydrogenase fdoH CDS COG0437 4097266 4098168 - [C] Fe-S-cluster-containing hydrogenase components 1 fdoG CDS COG0243 4098181 4101231 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 2053 fdhD CDS COG1526 4101425 4102258 + [C] Uncharacterized protein required for formate dehydrogenase 2054 insB_89 CDS COG1662 4102330 4102725 - [L] Transposase and inactivated derivatives, IS1 family insA_75 CDS COG3677 4102752 4103027 - [L] Transposase and inactivated derivatives 2055 frvX CDS COG1363 4103711 4104781 - [G] Cellulase M and related proteins frvB CDS COG1299 4104771 4106222 - [G] Phosphotransferase system, fructose-specific IIC component frvA CDS COG1762 4106233 4106679 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2056 yiiL CDS COG3254 4106980 4107294 - [S] Uncharacterized conserved protein 2057 rhaA CDS COG4806 4108370 4109629 - [G] L-rhamnose isomerase rhaB CDS COG1070 4109626 4111095 - [G] Sugar (pentulose and hexulose) kinases 2058 rhaS CDS COG2207 4111383 4112219 + [K] AraC-type DNA-binding domain-containing proteins rhaR CDS COG2207 4112203 4113141 + [K] AraC-type DNA-binding domain-containing proteins 2059 sodA CDS COG0605 4114457 4115077 + [P] Superoxide dismutase 2060 kdgT CDS ROG0711 4115337 4116320 + NA 2061 cds-NP_709714.1 CDS COG2801 4116350 4117255 - [L] Transposase and inactivated derivatives cds-NP_709715.3 CDS COG2963 4117213 4117623 - [L] Transposase and inactivated derivatives 2062 yiiM CDS COG2258 4117805 4118479 + [S] Uncharacterized protein conserved in bacteria 2063 cpxA CDS COG2205 4118585 4119958 - [T] Osmosensitive K+ channel histidine kinase cpxR CDS COG0745 4119955 4120653 - [TK] Response regulators consisting of a CheY-like 2064 cds-NP_709719.5 CDS COG3678 4120800 4121303 + [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2065 fieF CDS COG0053 4121451 4122353 + [P] Predicted Co/Zn/Cd cation transporters 2066 pfkA CDS COG0205 4122552 4123496 + [G] 6-phosphofructokinase 2067 sbp CDS COG1613 4123816 4124805 + [P] ABC-type sulfate transport system, periplasmic component cdh CDS COG2134 4124912 4125667 + [I] CDP-diacylglycerol pyrophosphatase 2068 tpiA CDS COG0149 4125722 4126489 - [G] Triosephosphate isomerase 2069 yiiQ CDS NA 4126597 4127196 - NA 2070 yiiS CDS COG3691 4127949 4128248 + [S] Uncharacterized protein conserved in bacteria yiiT CDS COG0589 4128275 4128703 + [T] Universal stress protein UspA and related 2071 fpr CDS COG1018 4128708 4129454 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 2072 glpX CDS COG1494 4129551 4130561 - [G] Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins glpK CDS COG0554 4130791 4132149 - [C] Glycerol kinase 2073 yiiU CDS COG3074 4133592 4133837 + [S] Uncharacterized protein conserved in bacteria 2074 menG CDS COG0684 4133922 4134407 - [H] Demethylmenaquinone methyltransferase menA CDS COG1575 4134500 4135426 - [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2075 hslU CDS COG1220 4135493 4136824 - [O] ATP-dependent protease HslVU (ClpYQ), ATPase subunit hslV CDS COG5405 4136834 4137364 - [O] ATP-dependent protease HslVU (ClpYQ), peptidase subunit ftsN CDS COG3087 4137457 4138416 - [D] Cell division protein 2076 cytR CDS COG1609 4138508 4139533 - [K] Transcriptional regulators priA CDS COG1198 4139689 4141887 - [L] Primosomal protein N' (replication factor Y) 2077 rpmE CDS COG0254 4142090 4142302 + [J] Ribosomal protein L31 2078 yiiX CDS ROG3369 4142363 4142971 - NA 2079 metJ CDS COG3060 4143155 4143472 - [KE] Transcriptional regulator of met regulon 2080 metB CDS COG0626 4143749 4144909 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases metL CDS COG0527 4144912 4147344 + [E] Aspartokinases metF CDS COG0685 4147693 4148583 + [E] 5,10-methylenetetrahydrofolate reductase 2081 katG CDS COG0376 4148912 4151092 + [P] Catalase (peroxidase I) 2082 cds-NP_709747.1 CDS COG0697 4151153 4152091 + [GER] Permeases of the drug/metabolite transporter (DMT) 2083 frwC CDS COG1299 4157596 4158675 + [G] Phosphotransferase system, fructose-specific IIC component frwB CDS COG1445 4158690 4159010 + [G] Phosphotransferase system fructose-specific component IIB pflD CDS COG1882 4159061 4161358 + [C] Pyruvate-formate lyase pflC CDS COG1180 4161324 4162202 + [O] Pyruvate-formate lyase-activating enzyme frwD CDS COG1445 4162204 4162545 + [G] Phosphotransferase system fructose-specific component IIB 2084 yijO CDS COG2207 4162532 4163383 - [K] AraC-type DNA-binding domain-containing proteins 2085 yijP CDS COG2194 4163532 4165265 - [R] Predicted membrane-associated, metal-dependent hydrolase 2086 ppc CDS COG2352 4165448 4168099 - [C] Phosphoenolpyruvate carboxylase 2087 argE CDS COG0624 4168451 4169602 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 2088 argC CDS COG0002 4169756 4170760 + [E] Acetylglutamate semialdehyde dehydrogenase argB CDS COG0548 4170771 4171544 + [E] Acetylglutamate kinase argH CDS COG0165 4171605 4172978 + [E] Argininosuccinate lyase 2089 cds-NP_709761.1 CDS COG3385 4173162 4174508 + [L] FOG: Transposase and inactivated derivatives 2090 cds-NP_709762.1 CDS COG4948 4174916 4176130 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of 2091 insA_76 CDS COG3677 4176618 4176893 + [L] Transposase and inactivated derivatives insB_90 CDS COG1662 4176920 4177315 + [L] Transposase and inactivated derivatives, IS1 family 2092 oxyR CDS COG0583 4178511 4179428 + [K] Transcriptional regulator 2093 udhA CDS COG1249 4179411 4180745 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 2094 yijC CDS COG1309 4181078 4181782 + [K] Transcriptional regulator yijD CDS NA 4181782 4182141 + NA 2095 trmA CDS COG2265 4182181 4183281 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 2096 btuB CDS COG4206 4183650 4185494 + [H] Outer membrane cobalamin receptor protein murI CDS COG0796 4185508 4186296 + [M] Glutamate racemase 2097 rrsB rRNA NA 4186670 4188211 + NA rna-SF4534 tRNA NA 4188297 4188372 + NA rrlB rRNA NA 4188566 4191469 + NA rrfB rRNA NA 4191564 4191682 + NA 2098 murB CDS COG0812 4191809 4192837 + [M] UDP-N-acetylmuramate dehydrogenase birA CDS COG0340 4192834 4193799 + [H] Biotin-(acetyl-CoA carboxylase) ligase 2099 coaA CDS COG1072 4193828 4194754 - [H] Panthothenate kinase 2100 rna-SF4537 tRNA NA 4195140 4195215 + NA rna-SF4538 tRNA NA 4195224 4195308 + NA rna-SF4539 tRNA NA 4195425 4195499 + NA rna-SF4540 tRNA NA 4195506 4195581 + NA 2101 tuf_2 CDS COG0050 4195696 4196880 + [J] GTPases - translation elongation factors secE CDS COG0690 4197110 4197493 + [U] Preprotein translocase subunit SecE nusG CDS COG0250 4197495 4198040 + [K] Transcription antiterminator rplK CDS COG0080 4198199 4198627 + [J] Ribosomal protein L11 rplA CDS COG0081 4198665 4199336 + [J] Ribosomal protein L1 rplJ CDS COG0244 4199749 4200246 + [J] Ribosomal protein L10 rplL CDS COG0222 4200313 4200678 + [J] Ribosomal protein L7/L12 rpoB CDS COG0085 4200998 4205026 + [K] DNA-directed RNA polymerase, beta subunit/140 kD rpoC CDS COG0086 4205103 4209326 + [K] DNA-directed RNA polymerase, beta' subunit/160 kD 2102 thiH CDS COG1060 4209568 4210701 - [HR] Thiamine biosynthesis enzyme ThiH and related thiG CDS COG2022 4210698 4211543 - [H] Uncharacterized enzyme of thiazole biosynthesis thiF CDS COG0476 4211654 4212409 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and thiE CDS COG0352 4212402 4213037 - [H] Thiamine monophosphate synthase thiC CDS COG0422 4213037 4214932 - [H] Thiamine biosynthesis protein ThiC 2103 yjaE CDS COG3160 4215166 4215642 - [K] Regulator of sigma D 2104 nudC CDS COG2816 4215737 4216510 + [L] NTP pyrophosphohydrolases containing a Zn-finger, probably hemE CDS COG0407 4216550 4217614 + [H] Uroporphyrinogen-III decarboxylase 2105 nfi CDS COG1515 4217771 4218442 + [L] Deoxyinosine 3'endonuclease (endonuclease V) yjaG CDS COG3068 4218485 4219075 + [S] Uncharacterized protein conserved in bacteria 2106 hupA CDS COG0776 4219262 4219534 + [L] Bacterial nucleoid DNA-binding protein yjaH CDS COG3042 4219547 4220242 + [R] Putative hemolysin 2107 yjaI CDS COG3678 4220244 4220810 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2108 hydH CDS COG0642 4220907 4222283 + [T] Signal transduction histidine kinase hydG CDS COG2204 4222280 4223605 + [T] Response regulator containing CheY-like receiver, AAA-type 2109 purD CDS COG0151 4223602 4224891 - [F] Phosphoribosylamine-glycine ligase purH CDS COG0138 4224903 4226492 - [F] AICAR transformylase/IMP cyclohydrolase PurH (only IMP 2110 rrsE rRNA NA 4227108 4228649 + NA rna-SF4542 tRNA NA 4228735 4228810 + NA rrlE rRNA NA 4229004 4231907 + NA rrfE rRNA NA 4232002 4232120 + NA 2111 aceA CDS COG2224 4234662 4235966 + [C] Isocitrate lyase 2112 iclR CDS COG1414 4240357 4241220 - [K] Transcriptional regulator 2113 metH CDS COG1410 4241381 4245064 + [E] Methionine synthase I, cobalamin-binding domain 2114 yjbB CDS COG1283 4245284 4246915 + [P] Na+/phosphate symporter 2115 pepE CDS COG3340 4247006 4247695 - [E] Peptidase E 2116 sorE CDS COG1063 4248077 4249306 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases sorM CDS COG3716 4249358 4250146 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID sorA CDS COG3715 4250157 4250897 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC sorB CDS COG3444 4251020 4251514 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB sorF CDS COG2893 4251514 4251921 - [G] Phosphotransferase system, mannose/fructose-specific component IIA sorD CDS COG1028 4251931 4252737 - [IQR] Dehydrogenases with different specificities (related to 2117 sorC CDS COG2390 4252807 4253754 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 2118 yjbC CDS COG1187 4254102 4254974 + [J] 16S rRNA uridine-516 pseudouridylate synthase and 2119 cds-NP_709814.1 CDS COG2801 4255250 4256155 - [L] Transposase and inactivated derivatives cds-NP_709815.3 CDS COG2963 4256113 4256523 - [L] Transposase and inactivated derivatives 2120 yjdH CDS COG3290 4256893 4258524 + [T] Signal transduction histidine kinase regulating citrate/malate yjdG CDS COG4565 4258521 4259240 + [KT] Response regulator of citrate/malate metabolism 2121 dcuB CDS COG2704 4259811 4261151 + [R] Anaerobic C4-dicarboxylate transporter fumB CDS COG1951 4261229 4262875 + [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class 2122 yjdF CDS COG3647 4262998 4263627 + [S] Predicted membrane protein 2123 melB CDS COG2211 4263766 4265175 - [G] Na+/melibiose symporter and related transporters melA CDS COG1486 4265290 4266645 - [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 2124 melR CDS COG2207 4266928 4267836 + [K] AraC-type DNA-binding domain-containing proteins 2125 adiA CDS COG1982 4268035 4270302 + [E] Arginine/lysine/ornithine decarboxylases 2126 adiY CDS COG2207 4270627 4271388 + [K] AraC-type DNA-binding domain-containing proteins 2127 yjdE CDS COG0531 4271525 4272862 + [E] Amino acid transporters 2128 yjdB CDS COG2194 4272936 4274609 + [R] Predicted membrane-associated, metal-dependent hydrolase basR CDS COG0745 4274606 4275274 + [TK] Response regulators consisting of a CheY-like basS CDS COG0642 4275275 4276375 + [T] Signal transduction histidine kinase 2129 proP CDS COG0477 4276552 4278054 - [GEPR] Permeases of the major facilitator superfamily 2130 yjcZ CDS NA 4278318 4279163 - NA yjdA CDS COG0699 4279193 4281421 - [R] Predicted GTPases (dynamin-related) 2131 phnA CDS COG2824 4281824 4282159 + [P] Uncharacterized Zn-ribbon-containing protein involved in phosphonate phnB CDS COG2764 4282317 4282760 + [S] Uncharacterized protein conserved in bacteria 2132 phnC CDS COG3638 4282893 4283681 + [P] ABC-type phosphate/phosphonate transport system, ATPase component phnD CDS COG3221 4283706 4284722 + [P] ABC-type phosphate/phosphonate transport system, periplasmic component 2133 insB_91 CDS COG1662 4284995 4285390 - [L] Transposase and inactivated derivatives, IS1 family insA_77 CDS COG3677 4285417 4285692 - [L] Transposase and inactivated derivatives 2134 soxS CDS COG2207 4287490 4287813 - [K] AraC-type DNA-binding domain-containing proteins 2135 soxR CDS COG0789 4287899 4288363 + [K] Predicted transcriptional regulators 2136 yjcD CDS COG2252 4289069 4290418 + [R] Permeases 2137 yjcE CDS COG0025 4290569 4292218 + [P] NhaP-type Na+/H+ and K+/H+ antiporters 2138 yjcF CDS COG1357 4292372 4293664 - [S] Uncharacterized low-complexity proteins 2139 actP CDS COG4147 4293842 4295491 - [R] Predicted symporter yjcH CDS COG3162 4295488 4295802 - [S] Predicted membrane protein 2140 nrfA CDS COG3303 4298353 4299789 + [P] Formate-dependent nitrite reductase, periplasmic cytochrome c552 nrfB CDS ROG7294 4299834 4300400 + NA nrfC CDS COG0437 4300397 4301068 + [C] Fe-S-cluster-containing hydrogenase components 1 nrfD CDS COG3301 4301065 4302021 + [P] Formate-dependent nitrite reductase, membrane component nrfE CDS COG1138 4302101 4303759 + [O] Cytochrome c biogenesis factor nrfF CDS COG3088 4303752 4304135 + [O] Uncharacterized protein involved in biosynthesis of nrfG CDS COG4235 4304132 4304728 + [O] Cytochrome c biogenesis factor 2141 gltP CDS COG1301 4305070 4306383 + [C] Na+/H+-dicarboxylate symporters 2142 yjcO CDS COG0790 4306461 4307129 - [R] FOG: TPR repeat, SEL1 subfamily 2143 yjcP CDS COG1538 4309589 4311055 - [MU] Outer membrane protein yjcQ CDS COG1289 4311052 4312953 - [S] Predicted membrane protein yjcR CDS COG1566 4313094 4314125 - [V] Multidrug resistance efflux pump cds-NP_709858.1 CDS NA 4314091 4314411 - NA 2144 insB_92 CDS COG1662 4314486 4314989 + [L] Transposase and inactivated derivatives, IS1 family 2145 ssb CDS COG0629 4315118 4315654 - [L] Single-stranded DNA-binding protein 2146 uvrA CDS COG0178 4315908 4318730 + [L] Excinuclease ATPase subunit 2147 yjbR CDS COG2315 4318765 4319121 - [S] Uncharacterized protein conserved in bacteria yjbQ CDS COG0432 4319125 4319541 - [S] Uncharacterized conserved protein 2148 aphA CDS COG3700 4319652 4320365 - [R] Acid phosphatase (class B) 2149 cds-NP_709865.1 CDS NA 4320728 4321135 + NA 2150 tyrB CDS COG1448 4321474 4322667 - [E] Aspartate/tyrosine/aromatic aminotransferase 2151 alr CDS COG0787 4322920 4323999 - [M] Alanine racemase dnaB CDS COG0305 4324052 4325467 - [L] Replicative DNA helicase 2152 qor CDS COG0604 4325550 4326533 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 2153 yjbO CDS NA 4326699 4326941 - NA 2154 yjbN CDS COG0042 4327075 4328094 - [J] tRNA-dihydrouridine synthase 2155 yjbM CDS NA 4328475 4329182 - NA yjbL CDS NA 4329206 4329460 - NA 2156 yjbK CDS COG0735 4329718 4330293 + [P] Fe2+/Zn2+ uptake regulation proteins 2157 yjbJ CDS COG3237 4330335 4330544 - [S] Uncharacterized protein conserved in bacteria 2158 dinF CDS COG0534 4330660 4332039 - [V] Na+-driven multidrug efflux pump lexA CDS COG1974 4332058 4332666 - [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 2159 dgkA CDS COG0818 4332776 4333144 - [M] Diacylglycerol kinase 2160 plsB CDS COG2937 4333255 4335738 + [I] Glycerol-3-phosphate O-acyltransferase 2161 ubiA CDS COG0382 4335893 4336765 - [H] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases ubiC CDS COG3161 4336778 4337275 - [H] 4-hydroxybenzoate synthetase (chorismate lyase) 2162 malM CDS ROG8131 4339307 4340227 - NA 2163 lamB CDS COG4580 4340379 4341716 - [G] Maltoporin (phage lambda and maltose receptor) malK CDS COG3839 4341791 4342906 - [G] ABC-type sugar transport systems, ATPase components 2164 malE CDS COG2182 4343271 4344461 + [G] Maltose-binding periplasmic proteins/domains malF CDS COG1175 4344615 4346159 + [G] ABC-type sugar transport systems, permease components malG CDS COG3833 4346174 4347064 + [G] ABC-type maltose transport systems, permease component 2165 xylE CDS COG0477 4347435 4348910 + [GEPR] Permeases of the major facilitator superfamily 2166 yjbA CDS COG3223 4348954 4349364 - [S] Predicted membrane protein 2167 cds-YP_008439295.1 CDS NA 4349634 4349912 + NA 2168 yjbH CDS ROG0647 4349959 4352055 - NA yjbG CDS ROG0647 4352055 4352792 - NA yjbF CDS ROG4342 4352789 4353457 - NA 2169 yjbE CDS COG5455 4353541 4353783 - [S] Predicted integral membrane protein 2170 pgi CDS COG0166 4354246 4355895 - [G] Glucose-6-phosphate isomerase 2171 lysC CDS COG0527 4356420 4357769 + [E] Aspartokinases 2172 cds-NP_709896.1 CDS COG3436 4357935 4359536 - [L] Transposase and inactivated derivatives 2173 cds-NP_709898.1 CDS COG2963 4359881 4360555 - [L] Transposase and inactivated derivatives 2174 cds-NP_709899.3 CDS COG2963 4360670 4361080 + [L] Transposase and inactivated derivatives cds-NP_709900.1 CDS COG2801 4361038 4361943 + [L] Transposase and inactivated derivatives 2175 yjiI CDS COG1859 4362143 4362829 - [J] RNA:NAD 2'-phosphotransferase 2176 yjiH CDS COG3314 4362965 4363660 + [S] Uncharacterized protein conserved in bacteria yjiG CDS COG0700 4363657 4364118 + [S] Uncharacterized membrane protein iadA CDS COG0044 4364131 4365303 + [F] Dihydroorotase and related cyclic amidohydrolases 2177 yjiE CDS COG0583 4365368 4366279 + [K] Transcriptional regulator 2178 iraD CDS COG3518 4366272 4366673 - [S] Uncharacterized protein conserved in bacteria 2179 insB_93 CDS COG1662 4366950 4367345 - [L] Transposase and inactivated derivatives, IS1 family insA_78 CDS COG3677 4367372 4367647 - [L] Transposase and inactivated derivatives 2180 yjiC CDS NA 4368114 4368944 + NA 2181 uxuR CDS COG2186 4369085 4369858 - [K] Transcriptional regulators uxuB CDS COG0246 4370073 4371533 - [G] Mannitol-1-phosphate/altronate dehydrogenases uxuA CDS COG1312 4371614 4372798 - [G] D-mannonate dehydratase 2182 gntP CDS COG2610 4373138 4374481 + [GE] H+/gluconate symporter and related permeases 2183 fimH CDS COG3539 4374732 4375634 - [NU] P pilus assembly protein, pilin FimA fimG CDS COG3539 4375654 4376157 - [NU] P pilus assembly protein, pilin FimA fimF CDS COG3539 4376170 4376700 - [NU] P pilus assembly protein, pilin FimA 2184 insB_94 CDS COG1662 4378774 4379169 - [L] Transposase and inactivated derivatives, IS1 family insA_79 CDS COG3677 4379196 4379471 - [L] Transposase and inactivated derivatives 2185 fimC CDS COG3121 4380189 4380914 - [NU] P pilus assembly protein, chaperone PapD fimI CDS COG3539 4380951 4381589 - [NU] P pilus assembly protein, pilin FimA fimA CDS COG3539 4381555 4382103 - [NU] P pilus assembly protein, pilin FimA 2186 fimE CDS COG4974 4382584 4383180 - [L] Site-specific recombinase XerD 2187 fimB CDS COG4974 4383775 4384260 - [L] Site-specific recombinase XerD 2188 yjhA CDS NA 4385705 4386430 + NA yjhT CDS COG3055 4386342 4387556 + [S] Uncharacterized protein conserved in bacteria 2189 yjhS CDS ROG0841 4387621 4388601 + NA 2190 insB_95 CDS COG1662 4389070 4389465 - [L] Transposase and inactivated derivatives, IS1 family insA_80 CDS COG3677 4389492 4389767 - [L] Transposase and inactivated derivatives 2191 cds-NP_709929.2 CDS COG1349 4389862 4390557 + [KG] Transcriptional regulators of sugar metabolism 2192 cds-NP_709930.1 CDS COG2963 4391027 4391311 + [L] Transposase and inactivated derivatives cds-NP_709931.1 CDS COG2801 4391368 4392180 + [L] Transposase and inactivated derivatives 2193 cds-NP_709932.1 CDS NA 4392500 4392823 - NA 2194 insB_96 CDS COG1662 4392898 4393401 + [L] Transposase and inactivated derivatives, IS1 family 2195 cds-NP_709934.1 CDS COG2963 4393558 4393896 + [L] Transposase and inactivated derivatives cds-NP_709935.1 CDS COG2801 4393923 4394762 + [L] Transposase and inactivated derivatives 2196 cds-NP_709936.2 CDS COG0582 4394737 4395948 - [L] Integrase 2197 rna-SF4545 tRNA NA 4396147 4396231 - NA 2198 yjgB CDS COG1064 4396385 4397446 + [R] Zn-dependent alcohol dehydrogenases 2199 yjgR CDS COG0433 4397527 4399077 + [R] Predicted ATPase 2200 yjgQ CDS COG0795 4399196 4400278 - [R] Predicted permeases yjgP CDS COG0795 4400278 4401378 - [R] Predicted permeases 2201 pepA CDS COG0260 4401645 4403156 + [E] Leucyl aminopeptidase holC CDS COG2927 4403290 4403733 + [L] DNA polymerase III, chi subunit valS CDS COG0525 4403733 4406588 + [J] Valyl-tRNA synthetase 2202 yjgN CDS COG4269 4406642 4407838 - [S] Predicted membrane protein 2203 cds-NP_709945.1 CDS COG0454 4408031 4408534 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2204 yjgD CDS COG3076 4408580 4408996 - [S] Uncharacterized protein conserved in bacteria 2205 argI CDS COG0078 4409158 4410171 + [E] Ornithine carbamoyltransferase 2206 insA_81 CDS COG3677 4410243 4410518 + [L] Transposase and inactivated derivatives insB_97 CDS COG1662 4410545 4410940 + [L] Transposase and inactivated derivatives, IS1 family 2207 yjgK CDS COG2731 4411802 4412254 - [G] Beta-galactosidase, beta subunit 2208 yjgJ CDS COG1309 4412399 4412992 - [K] Transcriptional regulator 2209 yjgI CDS COG1028 4413063 4413776 + [IQR] Dehydrogenases with different specificities (related to yjgH CDS COG0251 4413908 4414303 + [J] Putative translation initiation inhibitor, yjgF family 2210 pyrL CDS NA 4414584 4414718 + NA pyrB CDS COG0540 4414722 4415657 + [F] Aspartate carbamoyltransferase, catalytic chain pyrI CDS COG1781 4415670 4416131 + [F] Aspartate carbamoyltransferase, regulatory subunit yjgF CDS COG0251 4416165 4416590 + [J] Putative translation initiation inhibitor, yjgF family 2211 mgtA CDS COG0474 4416796 4419492 - [P] Cation transport ATPase 2212 treR CDS COG1609 4419871 4420818 + [K] Transcriptional regulators treB CDS COG1263 4420940 4422358 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific treC CDS COG0366 4422408 4424063 + [G] Glycosidases 2213 nrdD CDS COG1328 4424457 4426595 + [F] Oxygen-sensitive ribonucleoside-triphosphate reductase nrdG CDS COG0602 4426753 4427217 + [O] Organic radical activating enzymes 2214 cybC CDS COG3783 4427300 4427644 - [C] Soluble cytochrome b562 2215 pmbA CDS COG0312 4427827 4429179 - [R] Predicted Zn-dependent proteases and their inactivated 2216 yjgA CDS COG3028 4429273 4429824 + [S] Uncharacterized protein conserved in bacteria 2217 yjfG CDS COG0773 4429907 4431280 - [M] UDP-N-acetylmuramate-alanine ligase 2218 fbp CDS COG0158 4431456 4432454 + [G] Fructose-1,6-bisphosphatase 2219 cds-NP_709970.1 CDS COG3385 4432494 4433840 - [L] FOG: Transposase and inactivated derivatives 2220 ytfT CDS COG4158 4434908 4435933 - [R] Predicted ABC-type sugar transport system, permease ytfR CDS COG1129 4435944 4437446 - [G] ABC-type sugar transport system, ATPase component 2221 ppa CDS COG0221 4438852 4439382 + [C] Inorganic pyrophosphatase 2222 ytfP CDS COG2105 4439762 4440103 - [S] Uncharacterized conserved protein ytfN CDS COG2911 4440106 4443885 - [S] Uncharacterized protein conserved in bacteria ytfM CDS COG0729 4443882 4445615 - [M] Outer membrane protein 2223 msrA CDS COG0225 4445821 4446459 + [O] Peptide methionine sulfoxide reductase 2224 ytfL CDS COG1253 4446782 4448125 + [R] Hemolysins and related proteins containing CBS 2225 cds-YP_008439296.1 CDS ROG6034 4448187 4448459 - NA 2226 ytfJ CDS COG3054 4448718 4449272 + [R] Predicted transcriptional regulator 2227 ytfI CDS NA 4449335 4450273 - NA 2228 cysQ CDS COG1218 4450485 4451225 - [P] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 2229 cpdB CDS COG0737 4451415 4453358 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 2230 ytfH CDS COG1733 4453484 4453954 - [K] Predicted transcriptional regulators 2231 ytfG CDS COG0702 4453953 4454813 + [MG] Predicted nucleoside-diphosphate-sugar epimerases 2232 ytfF CDS COG0697 4454922 4455887 + [GER] Permeases of the drug/metabolite transporter (DMT) 2233 ytfE CDS COG2846 4455995 4456657 + [D] Regulator of cell morphogenesis and NO 2234 cycA CDS COG1113 4456702 4458114 - [E] Gamma-aminobutyrate permease and related permeases 2235 cds-NP_709990.3 CDS COG0545 4458422 4459093 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 2236 ytfB CDS COG3061 4459225 4459806 + [M] Cell envelope opacity-associated protein A 2237 ytfA CDS COG1309 4459790 4460437 - [K] Transcriptional regulator 2238 fabG_2 CDS COG1028 4460649 4461440 + [IQR] Dehydrogenases with different specificities (related to cds-NP_709994.1 CDS COG1082 4461450 4462334 + [G] Sugar phosphate isomerases/epimerases 2239 insB_98 CDS COG1662 4462269 4462772 - [L] Transposase and inactivated derivatives, IS1 family 2240 cds-NP_709996.1 CDS COG2801 4462847 4463842 + [L] Transposase and inactivated derivatives 2241 cds-NP_709997.1 CDS COG0531 4463883 4464935 - [E] Amino acid transporters 2242 insA_82 CDS COG3677 4465110 4465385 + [L] Transposase and inactivated derivatives insB_99 CDS COG1662 4465412 4465807 + [L] Transposase and inactivated derivatives, IS1 family 2243 rna-SF4546 tRNA NA 4466170 4466245 - NA 2244 yjdC CDS ROG3002 4466352 4466927 - NA dipZ CDS COG4232 4466964 4468661 - [OC] Thiol:disulfide interchange protein cutA CDS COG1324 4468637 4468975 - [P] Uncharacterized protein involved in tolerance to 2245 dcuA CDS COG2704 4469091 4470392 - [R] Anaerobic C4-dicarboxylate transporter aspA CDS COG1027 4470510 4471991 - [E] Aspartate ammonia-lyase 2246 cds-NP_710005.5 CDS COG3030 4472283 4472759 + [R] Protein affecting phage T7 exclusion by 2247 yjeH CDS COG0531 4472775 4474031 - [E] Amino acid transporters 2248 groES CDS COG0234 4474307 4474600 + [O] Co-chaperonin GroES (HSP10) groEL CDS COG0459 4474644 4476290 + [O] Chaperonin GroEL (HSP60 family) 2249 yjeI CDS ROG5059 4476395 4476781 + NA 2250 yjeJ CDS NA 4476984 4477853 - NA 2251 insA_83 CDS COG3677 4478039 4478314 + [L] Transposase and inactivated derivatives insB_100 CDS COG1662 4478341 4478736 + [L] Transposase and inactivated derivatives, IS1 family 2252 yjeK CDS COG1509 4479015 4480043 - [E] Lysine 2,3-aminomutase 2253 efp CDS COG0231 4480085 4480651 + [J] Translation elongation factor P (EF-P)/translation initiation ecnA CDS COG5510 4480703 4480828 + [S] Predicted small secreted protein ecnB CDS COG5510 4480939 4481085 + [S] Predicted small secreted protein sugE CDS COG2076 4481111 4481578 + [P] Membrane transporters of cations and cationic 2254 blc CDS COG3040 4481575 4482108 - [M] Bacterial lipocalin 2255 ampC CDS COG1680 4482197 4483330 - [V] Beta-lactamase class C and other penicillin 2256 frdD CDS COG3080 4483393 4483752 - [C] Fumarate reductase subunit D frdC CDS COG3029 4483763 4484158 - [C] Fumarate reductase subunit C frdB CDS COG0479 4484169 4484903 - [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit frdA CDS COG1053 4484896 4486704 - [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2257 yjeA CDS COG2269 4487029 4488006 + [J] Truncated, possibly inactive, lysyl-tRNA synthetase (class 2258 insB_101 CDS COG1662 4488407 4488802 - [L] Transposase and inactivated derivatives, IS1 family insA_84 CDS COG3677 4488829 4489104 - [L] Transposase and inactivated derivatives 2259 yjeP CDS COG3264 4490645 4493956 - [M] Small-conductance mechanosensitive channel psd CDS COG0688 4493978 4494946 - [I] Phosphatidylserine decarboxylase 2260 yjeQ CDS COG1162 4495043 4496128 - [R] Predicted GTPases 2261 yjeR CDS COG1949 4496121 4496735 + [A] Oligoribonuclease (3'->5' exoribonuclease) 2262 rna-SF4547 tRNA NA 4496946 4497021 + NA rna-SF4548 tRNA NA 4497179 4497254 + NA rna-SF4549 tRNA NA 4497290 4497365 + NA rna-SF4550 tRNA NA 4497401 4497476 + NA 2263 yjeS CDS COG1600 4497746 4498885 - [C] Uncharacterized Fe-S protein 2264 yjeF CDS COG0063 4498884 4500431 + [G] Predicted sugar kinase yjeE CDS COG0802 4500403 4500864 + [R] Predicted ATPase or kinase amiB CDS COG0860 4500883 4502220 + [M] N-acetylmuramoyl-L-alanine amidase mutL CDS COG0323 4502230 4504077 + [L] DNA mismatch repair enzyme (predicted ATPase) miaA CDS COG0324 4504070 4505020 + [J] tRNA delta(2)-isopentenylpyrophosphate transferase hfq CDS COG1923 4505106 4505414 + [R] Uncharacterized host factor I protein hflX CDS COG2262 4505490 4506770 + [R] GTPases hflK CDS COG0330 4506856 4508115 + [O] Membrane protease subunits, stomatin/prohibitin homologs hflC CDS COG0330 4508118 4509122 + [O] Membrane protease subunits, stomatin/prohibitin homologs 2265 yjeT CDS COG3242 4509204 4509401 + [S] Uncharacterized protein conserved in bacteria 2266 purA CDS COG0104 4509505 4510803 + [F] Adenylosuccinate synthase 2267 yjeB CDS COG1959 4511008 4511433 + [K] Predicted transcriptional regulator vacB CDS COG0557 4511430 4513913 + [K] Exoribonuclease R yjfH CDS COG0566 4514093 4514824 + [J] rRNA methylases 2268 insA_85 CDS COG3677 4514925 4515200 + [L] Transposase and inactivated derivatives insB_102 CDS COG1662 4515227 4515622 + [L] Transposase and inactivated derivatives, IS1 family 2269 yjfM CDS COG5463 4515888 4516526 + [S] Predicted integral membrane protein yjfC CDS COG0754 4516529 4517692 + [E] Glutathionylspermidine synthase 2270 cds-NP_710050.1 CDS COG1960 4517758 4519140 + [I] Acyl-CoA dehydrogenases 2271 insB_103 CDS COG1662 4519075 4519470 - [L] Transposase and inactivated derivatives, IS1 family insA_86 CDS COG3677 4519497 4519772 - [L] Transposase and inactivated derivatives 2272 yjfN CDS NA 4520295 4520597 - NA 2273 yjfO CDS ROG1801 4520719 4521147 - NA 2274 yjfP CDS COG1073 4521230 4521979 + [R] Hydrolases of the alpha/beta superfamily 2275 yjfQ CDS COG1349 4521976 4522731 - [KG] Transcriptional regulators of sugar metabolism yjfR CDS COG2220 4522839 4523909 - [R] Predicted Zn-dependent hydrolases of the beta-lactamase 2276 sgaT CDS COG3037 4524201 4525655 + [S] Uncharacterized protein conserved in bacteria sgaB CDS COG3414 4525671 4525976 + [G] Phosphotransferase system, galactitol-specific IIB component ptxA CDS COG1762 4525986 4526450 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) ulaD CDS COG0269 4526464 4527114 + [G] 3-hexulose-6-phosphate synthase and related proteins sgaU CDS COG3623 4527124 4527978 + [G] Putative L-xylulose-5-phosphate 3-epimerase sgaE CDS COG0235 4527978 4528664 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 2277 cds-YP_008439297.1 CDS NA 4528793 4529137 - NA 2278 rpsF CDS COG0360 4529395 4529790 + [J] Ribosomal protein S6 cds-YP_008439298.1 CDS COG2965 4529797 4530111 + [L] Primosomal replication protein N rpsR CDS COG0238 4530116 4530343 + [J] Ribosomal protein S18 rplI CDS COG0359 4530385 4530834 + [J] Ribosomal protein L9 2279 cds-NP_710067.2 CDS COG2963 4531532 4531810 + [L] Transposase and inactivated derivatives cds-NP_710068.1 CDS COG2801 4531867 4532448 + [L] Transposase and inactivated derivatives 2280 cds-NP_710069.1 CDS COG2801 4532489 4533307 - [L] Transposase and inactivated derivatives cds-NP_710070.1 CDS COG2963 4533343 4533645 - [L] Transposase and inactivated derivatives 2281 cds-NP_710071.1 CDS COG3586 4533710 4534030 + [S] Uncharacterized conserved protein 2282 cds-NP_710072.1 CDS COG2336 4534077 4534418 - [T] Growth regulator 2283 cds-NP_710073.1 CDS COG0732 4534639 4536300 - [V] Restriction endonuclease S subunits cds-NP_710074.1 CDS COG0286 4536300 4537805 - [V] Type I restriction-modification system methyltransferase subunit cds-NP_710075.1 CDS COG4096 4537836 4540268 - [V] Type I site-specific restriction-modification system, R 2284 insA_87 CDS COG3677 4540565 4540840 + [L] Transposase and inactivated derivatives insB_104 CDS COG1662 4540867 4541262 + [L] Transposase and inactivated derivatives, IS1 family 2285 cds-NP_710078.1 CDS COG1620 4541197 4542099 - [C] L-lactate permease yjiA CDS COG0523 4542108 4542962 - [R] Putative GTPases (G3E family) yjiX CDS COG2879 4543075 4543278 - [S] Uncharacterized small protein yjiY CDS COG1966 4543328 4545493 - [T] Carbon starvation protein, predicted membrane protein 2286 hpaC CDS COG1853 4545871 4546383 - [R] Conserved protein/domain typically associated with flavoprotein 2287 cds-NP_710085.2 CDS COG1234 4548212 4548979 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily 2288 hpaA CDS COG2207 4549150 4550040 - [K] AraC-type DNA-binding domain-containing proteins hpaX CDS COG2223 4550050 4551405 - [P] Nitrate/nitrite transporter hpaI CDS COG3836 4551427 4552230 - [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase hpaH CDS COG3971 4552241 4553044 - [Q] 2-keto-4-pentenoate hydratase hpaF CDS COG3232 4553112 4553492 - [E] 5-carboxymethyl-2-hydroxymuconate isomerase hpaD CDS COG3384 4553502 4554353 - [S] Uncharacterized conserved protein hpaE CDS COG1012 4554355 4555821 - [C] NAD-dependent aldehyde dehydrogenases hpaG CDS COG0179 4555818 4557107 - [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 2289 hpcR CDS COG1846 4557379 4557825 + [K] Transcriptional regulators tsr CDS COG0840 4557944 4559608 + [NT] Methyl-accepting chemotaxis protein 2290 yjiZ CDS COG2271 4559657 4561018 - [G] Sugar phosphate permease 2291 yjjM CDS COG1802 4561233 4562039 - [K] Transcriptional regulators 2292 mdoB CDS COG1368 4563446 4565698 - [M] Phosphoglycerol transferase and related proteins, alkaline 2293 yjjA CDS ROG6913 4565991 4566488 - NA dnaC CDS COG1484 4566534 4567271 - [L] DNA replication protein dnaT CDS COG5529 4567274 4567813 - [R] Pyocin large subunit 2294 yjjB CDS COG3610 4567920 4568408 - [S] Uncharacterized conserved protein yjjP CDS COG2966 4568384 4569217 - [S] Uncharacterized conserved protein 2295 insA_88 CDS COG3677 4569778 4570053 + [L] Transposase and inactivated derivatives insB_105 CDS COG1662 4570080 4570475 + [L] Transposase and inactivated derivatives, IS1 family yjjQ CDS NA 4570477 4571061 + NA bglJ CDS COG2771 4571019 4571696 + [K] DNA-binding HTH domain-containing proteins 2296 fhuF CDS COG4114 4571734 4572522 - [R] Uncharacterized Fe-S protein 2297 cds-NP_710109.1 CDS NA 4572552 4572899 + NA 2298 rna-SF4551 tRNA NA 4572938 4573024 - NA rna-SF4552 tRNA NA 4573060 4573148 - NA rna-SF4553 tRNA NA 4573177 4573263 - NA 2299 rsmC CDS COG2813 4573540 4574571 - [J] 16S RNA G1207 methylase RsmC 2300 holD CDS COG3050 4574674 4575087 + [L] DNA polymerase III, psi subunit rimI CDS COG0456 4575056 4575502 + [R] Acetyltransferases yjjG CDS COG1011 4575517 4576194 + [R] Predicted hydrolase (HAD superfamily) 2301 prfC CDS COG4108 4576285 4577874 + [J] Peptide chain release factor RF-3 2302 osmY CDS COG2823 4578267 4578872 + [R] Predicted periplasmic or secreted lipoprotein 2303 cds-NP_710116.1 CDS COG5487 4578959 4579150 + [S] Small integral membrane protein 2304 yjjU CDS COG4667 4579272 4580345 + [R] Predicted esterase of the alpha-beta hydrolase 2305 yjjV CDS COG0084 4580486 4581124 + [L] Mg-dependent DNase 2306 yjjW CDS COG1180 4581338 4582201 - [O] Pyruvate-formate lyase-activating enzyme yjjI CDS ROG2003 4582173 4583714 - NA 2307 deoC CDS COG0274 4583972 4584751 + [F] Deoxyribose-phosphate aldolase deoA CDS COG0213 4584878 4586200 + [F] Thymidine phosphorylase deoB CDS COG1015 4586252 4587475 + [G] Phosphopentomutase deoD CDS COG0813 4587532 4588251 + [F] Purine-nucleoside phosphorylase 2308 cds-NP_710125.1 CDS COG2932 4588412 4588675 - [K] Predicted transcriptional regulator 2309 smp CDS COG3726 4589750 4590394 - [R] Uncharacterized membrane protein affecting hemolysin expression 2310 serB CDS COG0560 4590500 4591468 + [E] Phosphoserine phosphatase sms CDS COG1066 4591517 4592899 + [O] Predicted ATP-dependent serine protease nadR CDS COG3172 4592899 4594152 + [H] Predicted ATPase/kinase involved in NAD metabolism 2311 yjjK CDS COG0488 4594460 4596127 - [R] ATPase components of ABC transporters with 2312 slt CDS COG0741 4596311 4598275 + [M] Soluble lytic murein transglycosylase and related 2313 trpR CDS COG2973 4598365 4598691 + [K] Trp operon repressor 2314 gpmB CDS COG0406 4599348 4599995 + [G] Fructose-2,6-bisphosphatase 2315 rob CDS COG2207 4599992 4600861 - [K] AraC-type DNA-binding domain-containing proteins 2316 creA CDS COG3045 4601072 4601545 + [S] Uncharacterized protein conserved in bacteria creB CDS COG0745 4601558 4602247 + [TK] Response regulators consisting of a CheY-like creC CDS COG2205 4602247 4603671 + [T] Osmosensitive K+ channel histidine kinase creD CDS COG4452 4603729 4605081 + [V] Inner membrane protein involved in colicin 2317 arcA CDS COG0745 4605140 4605856 - [TK] Response regulators consisting of a CheY-like 2318 lasT CDS NA 4606492 4607178 + NA 2319 cds-NP_858134.1 CDS NA 191 493 - NA 2320 cds-NP_858135.1 CDS COG4644 485 949 + [L] Transposase and inactivated derivatives, TnpA family 2321 ospB CDS NA 1176 2042 + NA 2322 phoN2/apy CDS COG0671 2371 3111 + [I] Membrane-associated phospholipid phosphatase 2323 ospC4 CDS NA 3471 4745 - NA 2324 cds-NP_858139.2 CDS COG3436 5264 5665 - [L] Transposase and inactivated derivatives cds-NP_858140.1 CDS COG2801 5745 6095 - [L] Transposase and inactivated derivatives cds-NP_858141.1 CDS COG2801 6107 6925 - [L] Transposase and inactivated derivatives 2325 ospD2 CDS NA 7435 9144 - NA 2326 ospF CDS NA 9576 10295 - NA 2327 cds-NP_858144.1 CDS COG3464 10420 10794 - [L] Transposase and inactivated derivatives cds-NP_858145.2 CDS COG3464 10620 10997 - [L] Transposase and inactivated derivatives 2328 cds-NP_858146.1 CDS COG1662 11015 11218 + [L] Transposase and inactivated derivatives, IS1 family 2329 cds-NP_858147.1 CDS NA 11327 11905 - NA 2330 cds-NP_858148.1 CDS ROG0048 12871 13227 - NA cds-NP_858149.2 CDS COG1545 13227 13412 - [R] Predicted nucleic-acid-binding protein containing a Zn-ribbon 2331 cds-NP_858150.1 CDS COG3385 13870 15213 - [L] FOG: Transposase and inactivated derivatives 2332 cds-NP_858151.1 CDS COG2963 15326 15661 + [L] Transposase and inactivated derivatives cds-NP_858152.1 CDS COG3436 15661 16008 + [L] Transposase and inactivated derivatives cds-NP_858153.1 CDS COG3436 16028 17335 + [L] Transposase and inactivated derivatives 2333 cds-NP_858154.1 CDS COG3328 18104 18310 + [L] Transposase and inactivated derivatives 2334 ospD1 CDS COG0666 18898 19575 + [R] FOG: Ankyrin repeat 2335 cds-NP_858156.1 CDS NA 20087 20401 + NA 2336 ipgB2 CDS NA 20683 21249 + NA 2337 cds-NP_858158.1 CDS COG2801 21746 22330 + [L] Transposase and inactivated derivatives 2338 cds-NP_858159.1 CDS COG4584 23117 23899 + [L] Transposase and inactivated derivatives 2339 cds-NP_858161.2 CDS ROG0762 23820 25043 - NA 2340 cds-NP_858160.2 CDS COG4584 25018 25449 + [L] Transposase and inactivated derivatives cds-NP_858162.1 CDS COG1484 25446 26228 + [L] DNA replication protein cds-NP_858163.1 CDS COG1662 26244 26633 + [L] Transposase and inactivated derivatives, IS1 family 2341 parA CDS COG1192 26955 28154 + [D] ATPases involved in chromosome partitioning parB CDS ROG7067 28154 29134 + NA 2342 cds-NP_858167.2 CDS NA 29339 29521 - NA 2343 cds-NP_858166.2 CDS COG3547 29516 29875 + [L] Transposase and inactivated derivatives 2344 cds-NP_858170.1 CDS NA 31156 31551 + NA cds-NP_858171.1 CDS NA 31392 31811 + NA 2345 cds-NP_858172.1 CDS COG2801 32084 32752 - [L] Transposase and inactivated derivatives cds-NP_858173.1 CDS COG2963 32967 33293 - [L] Transposase and inactivated derivatives cds-NP_858174.1 CDS COG2801 33299 33706 - [L] Transposase and inactivated derivatives 2346 cds-NP_858175.1 CDS NA 33762 33950 + NA cds-NP_858176.1 CDS ROG0048 33960 35159 + NA 2347 cds-NP_858177.1 CDS COG2963 35565 36086 - [L] Transposase and inactivated derivatives 2348 cds-NP_858178.1 CDS COG1484 36124 36507 + [L] DNA replication protein 2349 virF CDS COG2207 36449 37237 - [K] AraC-type DNA-binding domain-containing proteins 2350 cds-NP_858180.1 CDS COG2801 37780 38067 + [L] Transposase and inactivated derivatives 2351 ospE2 CDS ROG7670 38249 38515 + NA 2352 cds-NP_858183.2 CDS NA 38612 38824 - NA 2353 insA_89 CDS COG3677 38753 38980 + [L] Transposase and inactivated derivatives insB_106 CDS COG1662 39007 39402 + [L] Transposase and inactivated derivatives, IS1 family 2354 ipaH2.5 CDS COG4886 41197 42888 + [S] Leucine-rich repeat (LRR) protein cds-NP_858188.1 CDS COG2963 42940 43266 + [L] Transposase and inactivated derivatives cds-NP_858189.1 CDS COG2801 43481 44149 + [L] Transposase and inactivated derivatives 2355 cds-NP_858190.1 CDS COG2801 44189 44377 - [L] Transposase and inactivated derivatives cds-NP_858191.1 CDS COG2963 44413 44715 - [L] Transposase and inactivated derivatives cds-NP_858192.1 CDS COG0454 44783 45265 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases cds-NP_858193.2 CDS COG4453 45256 45558 - [S] Uncharacterized protein conserved in bacteria 2356 cds-YP_145811.1 CDS NA 45830 46102 + NA cds-NP_858194.1 CDS ROG0048 46083 47291 + NA 2357 cds-NP_858195.1 CDS COG3293 47361 47591 + [L] Transposase and inactivated derivatives 2358 ospC2 CDS NA 47740 49194 - NA 2359 cds-NP_858197.1 CDS NA 49511 49708 - NA 2360 insB_107 CDS COG1662 49783 50241 + [L] Transposase and inactivated derivatives, IS1 family cds-NP_858199.1 CDS COG2963 50267 50593 + [L] Transposase and inactivated derivatives cds-NP_858200.1 CDS COG2801 50808 51476 + [L] Transposase and inactivated derivatives cds-NP_858201.1 CDS COG3436 51442 51930 + [L] Transposase and inactivated derivatives cds-NP_858202.1 CDS COG1484 51950 52576 + [L] DNA replication protein 2361 sepA CDS COG3468 52745 56839 - [MU] Type V secretory pathway, adhesin AidA 2362 cds-NP_858204.1 CDS NA 57241 57429 + NA cds-NP_858205.1 CDS ROG0048 57439 58638 + NA 2363 cds-NP_858206.1 CDS COG3293 58935 59264 + [L] Transposase and inactivated derivatives cds-NP_858207.1 CDS COG3293 59270 59659 + [L] Transposase and inactivated derivatives cds-NP_858208.1 CDS COG3335 59774 60805 + [L] Transposase and inactivated derivatives 2364 cds-NP_858209.1 CDS COG3677 60987 61271 + [L] Transposase and inactivated derivatives cds-NP_858210.1 CDS COG1662 61397 61579 + [L] Transposase and inactivated derivatives, IS1 family 2365 ipaH7.8 CDS COG4886 62214 63911 + [S] Leucine-rich repeat (LRR) protein ipaH4.5 CDS COG4886 64339 66063 + [S] Leucine-rich repeat (LRR) protein cds-NP_858213.1 CDS COG2963 66115 66441 + [L] Transposase and inactivated derivatives cds-NP_858214.1 CDS COG2801 66656 67369 + [L] Transposase and inactivated derivatives 2366 ipgH CDS COG2271 68288 69691 + [G] Sugar phosphate permease cds-NP_858216.1 CDS COG3023 69660 69950 + [V] Negative regulator of beta-lactamase expression 2367 cds-NP_858217.1 CDS ROG0762 70195 71403 + NA 2368 cds-NP_858218.1 CDS COG1484 71382 71573 - [L] DNA replication protein cds-NP_858219.1 CDS COG3436 71614 72117 - [L] Transposase and inactivated derivatives cds-NP_858220.1 CDS COG2801 72090 72881 - [L] Transposase and inactivated derivatives cds-NP_858221.1 CDS COG2963 73096 73422 - [L] Transposase and inactivated derivatives 2369 cds-NP_858222.1 CDS COG1484 73674 74336 + [L] DNA replication protein 2370 cds-NP_858223.1 CDS NA 74709 75071 + NA 2371 cds-NP_858297.1 CDS ROG0048 74712 74978 - NA 2372 cds-NP_858224.1 CDS ROG0762 75050 76258 - NA 2373 cds-NP_858225.1 CDS ROG0048 76328 77257 - NA 2374 ospD3 CDS NA 77913 79610 - NA 2375 ospC1 CDS COG0666 79939 81351 - [R] FOG: Ankyrin repeat 2376 cds-NP_858228.1 CDS COG3436 81806 82105 - [L] Transposase and inactivated derivatives cds-NP_858230.2 CDS NA 82115 82504 - NA 2377 cds-NP_858229.2 CDS NA 82466 82654 + NA 2378 cds-NP_858231.1 CDS COG3293 82691 83080 - [L] Transposase and inactivated derivatives cds-NP_858232.1 CDS COG3293 83086 83625 - [L] Transposase and inactivated derivatives cds-NP_858233.1 CDS COG2207 83645 84118 - [K] AraC-type DNA-binding domain-containing proteins 2379 cds-NP_858234.1 CDS COG3547 84369 85565 + [L] Transposase and inactivated derivatives 2380 cds-NP_858235.1 CDS NA 85560 85979 - NA 2381 cds-NP_858238.1 CDS COG2801 87010 87915 - [L] Transposase and inactivated derivatives cds-NP_858239.1 CDS COG2963 87873 88283 - [L] Transposase and inactivated derivatives cds-NP_858240.1 CDS COG2801 88353 89171 - [L] Transposase and inactivated derivatives cds-NP_858241.1 CDS COG2963 89207 89509 - [L] Transposase and inactivated derivatives 2382 cds-NP_858242.1 CDS COG0454 90030 90515 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases cds-NP_858243.2 CDS COG4453 90503 90787 - [S] Uncharacterized protein conserved in bacteria 2383 cds-NP_858244.1 CDS NA 91689 91853 + NA 2384 cds-NP_858245.1 CDS COG3436 92107 93708 - [L] Transposase and inactivated derivatives cds-NP_858246.1 CDS COG3436 93705 94055 - [L] Transposase and inactivated derivatives cds-NP_858247.1 CDS COG2963 94052 94726 - [L] Transposase and inactivated derivatives 2385 ospC3 CDS ROG7410 95295 96749 + NA 2386 cds-NP_858249.1 CDS COG2963 97087 97389 + [L] Transposase and inactivated derivatives cds-NP_858250.1 CDS COG2801 97417 98151 + [L] Transposase and inactivated derivatives cds-NP_858251.1 CDS COG2801 98573 98995 + [L] Transposase and inactivated derivatives 2387 cds-NP_858252.2 CDS ROG0068 99455 100231 + NA 2388 cds-NP_858253.1 CDS COG3547 100321 101517 - [L] Transposase and inactivated derivatives 2389 cds-NP_858254.1 CDS COG4584 101709 102713 - [L] Transposase and inactivated derivatives 2390 ipaJ CDS NA 104066 104845 + NA 2391 virB CDS NA 105792 106721 - NA 2392 acp CDS COG0236 106938 107174 - [IQ] Acyl carrier protein ipaA CDS NA 107178 109079 - NA ipaD CDS NA 109088 110086 - NA ipaC CDS NA 110137 111228 - NA ipaB CDS ROG6900 111248 112990 - NA ipgC CDS ROG7263 112996 113463 - NA ipgB1 CDS ROG2614 113520 114146 - NA ipgA CDS NA 114162 114551 - NA icsB CDS NA 114564 116048 - NA 2393 ipgD CDS NA 116362 117978 + NA ipgE CDS NA 117988 118350 + NA ipgF CDS COG0741 118350 118808 + [M] Soluble lytic murein transglycosylase and related mxiG CDS NA 118817 119932 + NA mxiH CDS ROG1382 119940 120191 + NA mxiI CDS NA 120204 120497 + NA mxiJ CDS COG4669 120503 121228 + [U] Type III secretory pathway, lipoprotein EscJ mxiK CDS COG5609 121225 121752 + [S] Uncharacterized conserved protein mxiN CDS ROG2594 121694 122389 + NA mxiL CDS NA 122382 122789 + NA mxiM CDS NA 122773 123201 + NA 2394 mxiE CDS COG2207 123331 123963 + [K] AraC-type DNA-binding domain-containing proteins mxiD CDS COG1450 123950 125650 + [NU] Type II secretory pathway, component PulD mxiC CDS ROG3853 125669 126736 + NA mxiA CDS COG4789 126749 128809 + [U] Type III secretory pathway, component EscV spa15 CDS NA 128822 129223 + NA spa47 CDS COG1157 129227 130519 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase 2395 spa13 CDS NA 130612 130950 + NA spa32 CDS ROG2387 130937 131815 + NA 2396 spa33 CDS COG1886 131944 132690 + [NU] Flagellar motor switch/type III secretory pathway spaP CDS COG4790 132695 133345 + [U] Type III secretory pathway, component EscR spa9 CDS COG4794 133360 133620 + [U] Type III secretory pathway, component EscS spa29 CDS COG4791 133620 134390 + [U] Type III secretory pathway, component EscT spa40 CDS COG4792 134397 135425 + [U] Type III secretory pathway, component EscU 2397 cds-NP_858290.1 CDS COG2801 136257 136982 - [L] Transposase and inactivated derivatives cds-NP_858291.1 CDS COG2963 137018 137320 - [L] Transposase and inactivated derivatives 2398 cds-NP_858292.1 CDS COG2801 137406 137594 + [L] Transposase and inactivated derivatives cds-NP_858293.1 CDS NA 137606 137770 + NA cds-NP_858294.1 CDS NA 137785 137973 + NA 2399 cds-NP_858295.1 CDS NA 137953 138309 - NA 2400 cds-NP_858298.1 CDS COG2801 139297 139590 - [L] Transposase and inactivated derivatives cds-NP_858299.1 CDS COG2963 139651 139866 - [L] Transposase and inactivated derivatives cds-NP_858300.2 CDS NA 139920 140324 - NA 2401 cds-NP_858301.1 CDS NA 140876 141592 - NA 2402 cds-NP_858303.2 CDS COG3464 142609 142983 - [L] Transposase and inactivated derivatives 2403 cds-NP_858302.2 CDS NA 142682 143110 + NA cds-NP_858304.1 CDS COG2963 143116 143442 + [L] Transposase and inactivated derivatives cds-NP_858305.1 CDS COG2801 143657 144064 + [L] Transposase and inactivated derivatives cds-NP_858306.1 CDS COG2801 144033 144326 + [L] Transposase and inactivated derivatives 2404 cds-NP_858307.1 CDS COG3464 144329 144559 - [L] Transposase and inactivated derivatives 2405 cds-NP_858308.1 CDS ROG0048 144804 145160 - NA cds-NP_858309.1 CDS NA 145160 145582 - NA 2406 cds-NP_858310.2 CDS COG3344 146245 146484 - [L] Retron-type reverse transcriptase 2407 cds-NP_858311.1 CDS COG2801 146631 146873 - [L] Transposase and inactivated derivatives cds-NP_858312.1 CDS COG2801 146846 147409 - [L] Transposase and inactivated derivatives cds-NP_858313.2 CDS COG2963 147516 147734 - [L] Transposase and inactivated derivatives 2408 virA CDS NA 147913 149115 - NA 2409 icsA/virG CDS COG3468 149644 152952 + [MU] Type V secretory pathway, adhesin AidA 2410 cds-NP_858316.1 CDS COG2963 153587 153913 + [L] Transposase and inactivated derivatives cds-NP_858317.1 CDS COG2801 154128 154796 + [L] Transposase and inactivated derivatives 2411 ushA_2 CDS COG0737 155137 156789 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases cds-NP_858319.1 CDS NA 156758 156943 + NA 2412 cds-NP_858320.1 CDS COG3344 157296 157622 - [L] Retron-type reverse transcriptase cds-NP_858321.1 CDS COG3344 157675 158478 - [L] Retron-type reverse transcriptase cds-NP_858322.1 CDS COG2801 158491 158691 - [L] Transposase and inactivated derivatives 2413 phoN1 CDS COG0671 159087 159836 + [I] Membrane-associated phospholipid phosphatase 2414 cds-NP_858324.1 CDS COG3293 160006 160395 - [L] Transposase and inactivated derivatives cds-NP_858325.1 CDS COG3293 160401 160850 - [L] Transposase and inactivated derivatives cds-NP_858326.2 CDS COG3077 160896 161276 - [L] DNA-damage-inducible protein J 2415 stbB CDS NA 161459 161854 - NA stbA CDS ROG6717 161854 162813 - NA 2416 yccB CDS NA 163184 164155 + NA cds-NP_858330.2 CDS NA 164152 164463 + NA 2417 ycdA CDS COG0863 164527 165210 + [L] DNA modification methylase yceA_2 CDS NA 165211 165432 + NA cds-NP_858333.2 CDS NA 165429 165629 + NA cds-NP_858334.1 CDS NA 165663 165878 + NA ycfA CDS NA 165923 166693 + NA 2418 cds-NP_858336.1 CDS COG3547 167032 167685 - [L] Transposase and inactivated derivatives cds-NP_858337.1 CDS COG3436 167760 169361 - [L] Transposase and inactivated derivatives cds-NP_858338.1 CDS COG3436 169358 169708 - [L] Transposase and inactivated derivatives cds-NP_858339.1 CDS COG2963 169705 170379 - [L] Transposase and inactivated derivatives cds-NP_858340.1 CDS COG2801 170327 171064 - [L] Transposase and inactivated derivatives cds-NP_858341.2 CDS COG2963 171135 171500 - [L] Transposase and inactivated derivatives 2419 cds-NP_858342.1 CDS NA 171972 172610 - NA 2420 cds-NP_858343.1 CDS COG3677 172967 173239 - [L] Transposase and inactivated derivatives 2421 cds-NP_858344.1 CDS COG2963 173438 174112 + [L] Transposase and inactivated derivatives cds-NP_858345.1 CDS COG3436 174109 174456 + [L] Transposase and inactivated derivatives cds-NP_858346.1 CDS COG3436 174476 176077 + [L] Transposase and inactivated derivatives 2422 cds-NP_858347.1 CDS COG1484 176266 176499 + [L] DNA replication protein 2423 cds-NP_858348.1 CDS COG3023 176551 176841 - [V] Negative regulator of beta-lactamase expression cds-NP_858349.1 CDS COG2271 176810 177061 - [G] Sugar phosphate permease 2424 cds-NP_858350.1 CDS ROG8364 177513 177797 + NA cds-NP_858351.1 CDS COG3668 177797 178072 + [R] Plasmid stabilization system protein cds-NP_858352.1 CDS NA 178125 178304 + NA 2425 insB_108 CDS COG1662 178298 178801 - [L] Transposase and inactivated derivatives, IS1 family 2426 cds-NP_858354.1 CDS NA 178876 179178 + NA 2427 cds-NP_858355.1 CDS COG3436 179387 179605 + [L] Transposase and inactivated derivatives cds-NP_858356.1 CDS COG3436 179624 180004 + [L] Transposase and inactivated derivatives 2428 ccdA CDS COG5302 180540 180758 + [R] Post-segregation antitoxin (ccd killing mechanism protein) ccdB CDS ROG0946 180760 181065 + NA 2429 ipaH9.8 CDS COG4886 181458 183095 + [S] Leucine-rich repeat (LRR) protein 2430 ospG CDS ROG1388 183824 184414 + NA 2431 mob9 CDS NA 184482 184661 - NA 2432 cds-NP_858364.1 CDS COG2963 186424 186753 + [L] Transposase and inactivated derivatives cds-NP_858365.1 CDS COG2801 186968 187636 + [L] Transposase and inactivated derivatives cds-NP_858366.1 CDS COG2801 188108 188326 + [L] Transposase and inactivated derivatives 2433 cds-NP_858367.1 CDS ROG4525 188314 191226 - NA 2434 shf CDS COG0726 191709 192551 + [G] Predicted xylanase/chitin deacetylase rfbU CDS COG0438 192554 193642 + [M] Glycosyltransferase virK CDS COG2990 193647 194597 + [S] Uncharacterized protein conserved in bacteria msbB2 CDS COG1560 194662 195606 + [M] Lauroyl/myristoyl acyltransferase 2435 cds-NP_858372.1 CDS COG3335 195760 196716 - [L] Transposase and inactivated derivatives 2436 cds-NP_858375.1 CDS COG2963 197582 197884 - [L] Transposase and inactivated derivatives 2437 traD CDS NA 197923 198108 + NA 2438 mvpA CDS COG1487 198117 198515 - [R] Predicted nucleic acid-binding protein, contains PIN mvpT CDS COG4456 198515 198742 - [S] Virulence-associated protein and related proteins 2439 cds-NP_858380.1 CDS ROG5733 198803 199195 + NA cds-NP_858381.1 CDS ROG5733 199216 200580 + NA cds-NP_858382.1 CDS ROG0206 200577 204077 + NA traX CDS ROG1688 204097 204843 + NA finO CDS NA 204898 205458 + NA 2440 yigA_2 CDS NA 205589 205801 + NA 2441 yigB_2 CDS COG1525 205985 206287 + [L] Micrococcal nuclease (thermonuclease) homologs 2442 cds-NP_858387.1 CDS COG2801 206328 207146 - [L] Transposase and inactivated derivatives cds-NP_858388.1 CDS COG2963 207182 207484 - [L] Transposase and inactivated derivatives 2443 cds-NP_858389.1 CDS COG1525 207606 207773 + [L] Micrococcal nuclease (thermonuclease) homologs 2444 yihA_2 CDS ROG4125 208067 208657 + NA 2445 repB CDS COG1058 208897 209157 + [R] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis 2446 tap_2 CDS NA 209381 209455 + NA repA CDS NA 209448 210305 + NA 2447 cds-NP_858394.1 CDS NA 211006 211197 + NA 2448 cds-NP_858395.1 CDS ROG0048 211427 212623 - NA cds-NP_858396.1 CDS NA 212633 212821 - NA 2449 cds-NP_858397.1 CDS ROG5298 212967 213134 + NA 2450 ipaH1.4 CDS COG4886 213152 214879 - [S] Leucine-rich repeat (LRR) protein 2451 ospE1 CDS NA 215268 215534 - NA 2452 cds-NP_858399.2 CDS NA 216182 216334 - NA 2453 cds-NP_858400.1 CDS COG2963 216373 216756 + [L] Transposase and inactivated derivatives cds-NP_858401.1 CDS COG2963 216790 217128 + [L] Transposase and inactivated derivatives cds-NP_858402.1 CDS COG2801 217155 217994 + [L] Transposase and inactivated derivatives 2454 cds-NP_858403.1 CDS COG2801 218767 218919 + [L] Transposase and inactivated derivatives 2455 icsP/sopA CDS COG4571 220300 221247 + [M] Outer membrane protease 2456 cds-NP_858405.1 CDS NA 221216 221383 - NA