BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: bact.fasta 31,544 sequences; 10,064,135 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value tr|B2VHU5|B2VHU5_ERWT9 ATP-dependent Clp protease ATP-binding s... 809 0.0 sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding sub... 805 0.0 tr|B2VHU8|B2VHU8_ERWT9 ATP-dependent Clp protease ATP-binding s... 803 0.0 sp|B4EU54|CLPX_PROMH ATP-dependent Clp protease ATP-binding sub... 769 0.0 sp|B5FBZ9|CLPX_VIBFM ATP-dependent Clp protease ATP-binding sub... 706 0.0 sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding sub... 654 0.0 sp|Q2K9U6|CLPX_RHIEC ATP-dependent Clp protease ATP-binding sub... 598 0.0 sp|Q3J1G7|CLPX_RHOS4 ATP-dependent Clp protease ATP-binding sub... 568 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding sub... 557 0.0 sp|B4F171|HSLU_PROMH ATP-dependent protease ATPase subunit HslU... 96.7 9e-22 sp|Q3J6B1|HSLU_RHOS4 ATP-dependent protease ATPase subunit HslU... 95.9 1e-21 sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU... 95.9 2e-21 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU... 95.1 2e-21 sp|B5FBL8|HSLU_VIBFM ATP-dependent protease ATPase subunit HslU... 94.4 5e-21 sp|Q2KE54|HSLU_RHIEC ATP-dependent protease ATPase subunit HslU... 93.6 8e-21 sp|B2VES3|HSLU_ERWT9 ATP-dependent protease ATPase subunit HslU... 91.7 4e-20 tr|B4F2B3|B4F2B3_PROMH ATP-dependent zinc metalloprotease FtsH ... 46.6 2e-05 tr|B2VGT3|B2VGT3_ERWT9 ATP-dependent zinc metalloprotease FtsH ... 46.2 2e-05 tr|Q74RB9|Q74RB9_YERPE Putative magnesium chelatase family prot... 46.2 2e-05 tr|B2VI68|B2VI68_ERWT9 Probable magnesium-chelatase OS=Erwinia ... 45.8 3e-05 tr|Q0WBE7|Q0WBE7_YERPE Cell division protein OS=Yersinia pestis... 45.8 3e-05 tr|B5FA73|B5FA73_VIBFM ATP-dependent zinc metalloprotease FtsH ... 45.4 4e-05 tr|Q2K4M2|Q2K4M2_RHIEC ATP-dependent zinc metalloprotease FtsH ... 45.4 4e-05 tr|Q8KKT3|Q8KKT3_RHIEC Probable ATPase (ATP-binding) protein OS... 44.3 7e-05 tr|Q3J045|Q3J045_RHOS4 ATP-dependent zinc metalloprotease FtsH ... 43.5 2e-04 tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH ... 43.5 2e-04 sp|Q9JUB0|RUVB_NEIMA Holliday junction ATP-dependent DNA helica... 42.7 2e-04 > tr|B2VHU5|B2VHU5_ERWT9 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=clpX PE=3 SV=1 Length=424 Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/424 (92%), Positives = 414/424 (98%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE+APHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEIAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE+AKKVL+VAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAET+ARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKV+S RV++GSGIGFGA+VK KS+KA+EGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL ELSEEALIQIL+EPKNALTKQYQALFNLEGV+LEFR+EAL AIA Sbjct 301 IPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAIAN 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVEAALL+TMYDLPS++DVEKVVIDESVI G+S+PLLIYGKP+ Q Sbjct 361 KAMLRKTGARGLRSIVEAALLNTMYDLPSVDDVEKVVIDESVIAGESEPLLIYGKPDVQH 420 Query 421 ASGE 424 SGE Sbjct 421 VSGE 424 > sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 > tr|B2VHU8|B2VHU8_ERWT9 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=clpX PE=3 SV=1 Length=424 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/424 (92%), Positives = 412/424 (97%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECVDLCNDIIREEIKE+APHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVDLCNDIIREEIKEIAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE+AKKVL+VAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAET+ARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKV+S RV++GSGIGFGA+VK KS+KA+EGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL ELSEEALIQIL+EPKNALTKQYQALFNLEGV+LEFR+EAL AIA Sbjct 301 IPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAIAN 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVEAALL+TMYDLPS++DVEKVVIDESVI G+S P LIY K + QQ Sbjct 361 KAMLRKTGARGLRSIVEAALLNTMYDLPSVDDVEKVVIDESVIAGESDPQLIYRKADTQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 > sp|B4EU54|CLPX_PROMH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Proteus mirabilis (strain HI4320) GN=clpX PE=3 SV=1 Length=423 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/424 (89%), Positives = 403/424 (95%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKD SGKLLYCSFCGKSQHEV+KLIAGPSVYICDECVDLC DIIREEIKE+APH E Sbjct 1 MTDKRKDSSGKLLYCSFCGKSQHEVKKLIAGPSVYICDECVDLCVDIIREEIKELAPHHE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS LPTPHEIR HLDDYVIGQE AKKVLAVAVYNHYKRLRNGD ++GVELGKSNILLIGP Sbjct 61 RSELPTPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKADGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKI+RKS+NPSITRDVSGEGVQQALLKL+EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKV++ R+ T SGIGFGA VK++++KASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQNEKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL EL+E+ALIQIL+EPKNALTKQYQALF LEGVDLEFR +AL AIAK Sbjct 301 IPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM+RKTGARGLRSIVEAALLDTMYDLPS E+ EKVVIDE+VI+G+S+PL+IY +PE Q Sbjct 361 KAMSRKTGARGLRSIVEAALLDTMYDLPSFENAEKVVIDENVINGKSEPLIIYSQPE-NQ 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 > sp|B5FBZ9|CLPX_VIBFM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio fischeri (strain MJ11) GN=clpX PE=3 SV=1 Length=428 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/428 (81%), Positives = 382/428 (89%), Gaps = 4/428 (1%) Query 1 MTDKRKD-GSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAP 57 MTDKRKD SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECVDLCNDIIREE+K+ ++P Sbjct 1 MTDKRKDENSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVDLCNDIIREELKDNTLSP 60 Query 58 HRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNIL 116 LPTP IR HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDT+ +GVELGKSNIL Sbjct 61 KESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNIL 120 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD KA Sbjct 121 LIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDPAKA 180 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 +RGIVYIDEIDKISRKS+NPSITRDVSGEGVQQALLKLIEGT+A+VPPQGGRKHPQQEFL Sbjct 181 ERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFL 240 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 QVDTSKILFICGGAFAGLDKVI RV TG+GIGFGA V++K ++A+ G+L Q+EPEDL+ Sbjct 241 QVDTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNEATIGDLFKQIEPEDLV 300 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLPV TL EL EEAL+QIL +PKNALTKQY ALF+LEG +LEFR++AL Sbjct 301 KFGLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALK 360 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 AIAKKAM RKTGARGLRSI+EA LL+TMY+LPS E V KVVIDESVI+G+S+PLLI+ Sbjct 361 AIAKKAMDRKTGARGLRSILEAVLLETMYELPSKEGVSKVVIDESVINGESEPLLIFENT 420 Query 417 EAQQASGE 424 E + S E Sbjct 421 ETKAISAE 428 > sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=clpX PE=3 SV=1 Length=426 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/418 (77%), Positives = 358/418 (86%), Gaps = 2/418 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EIR LD YVIGQE+AKKVLAVAVYNHYKRL D + +ELGKSNIL+IG Sbjct 61 SGHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL++VI +R G GIGF A V+++ GE +VEPEDL+KFG Sbjct 241 TRNILFICGGAFAGLERVIQNRSARG-GIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL+EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL A+A Sbjct 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 +KA+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG S+PL+IY E Sbjct 360 RKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMIYENSE 417 > sp|Q2K9U6|CLPX_RHIEC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1 Length=425 Score = 598 bits (1543), Expect = 0.0, Method: Compositional matrix adjust. Identities = 294/415 (71%), Positives = 349/415 (84%), Gaps = 3/415 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSRDGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 71 DIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATVKA+ D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVKAQDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA+KA+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM++LP++E V +VVI E V+ G ++PL IY + ++A+ Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYIYADRQEEKANA 423 > sp|Q3J1G7|CLPX_RHOS4 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=clpX PE=3 SV=1 Length=421 Score = 568 bits (1463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/413 (70%), Positives = 338/413 (82%), Gaps = 4/413 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M + S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + Sbjct 1 MANNTGSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSTG-LKS 59 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 +PTP EI LDDYVIGQ AK+VL+VAV+NHYKRL N + +EL KSNILLIGP Sbjct 60 ADGVPTPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRL-NHSSKTDIELSKSNILLIGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TG GKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++ QRGI Sbjct 119 TGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERVQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKI+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA VK D GEL ++EPEDL KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGAEVK-DPDARGVGELFKELEPEDLPKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEF+GRLPV+ATL +L E AL+ IL EPKNAL KQYQ LF +EGV L F +AL AIAK Sbjct 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 +A+ RKTGARGLRSI+E LLDTM++LP +E VE+VV++E ++ +KPLLIY Sbjct 357 RAIKRKTGARGLRSIMEDILLDTMFELPGLEGVEEVVVNEEAVNSGAKPLLIY 409 > sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 > sp|B4F171|HSLU_PROMH ATP-dependent protease ATPase subunit HslU OS=Proteus mirabilis (strain HI4320) GN=hslU PE=3 SV=1 Length=446 Score = 96.7 bits (239), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ D + E+ NIL+IGPTG GK Sbjct 5 TPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQ-LDEALRHEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 94.0 bits (232), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 101/228 (44%), Gaps = 59/228 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDE+DKI ++ S DVS EGVQ+ LL L+EG + KH Sbjct 251 QHGIVFIDEVDKICKRGGQSS-GPDVSREGVQRDLLPLVEGCTVST------KHGM---- 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 300 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ E +IL EP +LTKQYQAL EGV + F + + Sbjct 321 ---LIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYQALMATEGVSINFSQDGIR 377 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 IA+ A GAR L +++E + + YD S E ++ID Sbjct 378 KIAESAWRVNETTENIGARRLHTVLERLMEEISYD-ASERQGETILID 424 > sp|Q3J6B1|HSLU_RHOS4 ATP-dependent protease ATPase subunit HslU OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hslU PE=3 SV=1 Length=433 Score = 95.9 bits (237), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 48/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +AVA+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 T ++ LARL PF +AT TE GYVG DV++II+ L+ Sbjct 64 TEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLV 104 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 104/233 (45%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK+ +SD DVS EGVQ+ LL LIEGT + ++ Sbjct 239 QNGIVFIDEIDKVCARSDMRGA--DVSREGVQRDLLPLIEGTTVST-----------KYG 285 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 286 PVKTDHILFIASGAF--------H----------------------------IAKPSDLL 309 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE ++IL E NALT QY+AL E V + F ++ + Sbjct 310 -----PELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTEDGIA 364 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A A GAR L +++E + + P E+V +D + ++ Sbjct 365 ALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSG-EEVTVDAAYVE 416 > sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hslU PE=3 SV=1 Length=447 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/169 (37%), Positives = 92/169 (54%), Gaps = 21/169 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRA-EVTPKNILMIGPTGVGK 62 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T +A LARL + PF +AT TE GYVG DVE+II+ D+ A ++ E Sbjct 63 TEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIR--------DLADAAVKMLREQE 114 Query 186 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 I K+ +++ D + E + ALL AA P G P +E Sbjct 115 IQKVKYRAE------DAAEERILDALLP------AARPAMGFGDEPARE 151 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/238 (31%), Positives = 104/238 (44%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI+++++ DVS EGVQ+ LL LIEG + Sbjct 249 QHGIVFIDEIDKIAKRANAGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 295 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DL+ Sbjct 296 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLV 319 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS +IL EP +LT+QY+ L EG+ +EF ++ + Sbjct 320 -----PELQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL S + ++ID ++ Sbjct 375 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSH 432 > sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 > sp|B5FBL8|HSLU_VIBFM ATP-dependent protease ATPase subunit HslU OS=Vibrio fischeri (strain MJ11) GN=hslU PE=3 SV=1 Length=444 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELR-TEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE+II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDL 103 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/242 (31%), Positives = 112/242 (46%), Gaps = 62/242 (26%) Query 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222 ++L ++ ++V+ GIV+IDEIDKI + S++ S DVS EGVQ+ LL L+EG+ + Sbjct 238 EELKEQAIFNVE--NHGIVFIDEIDKICKGSNSHS--GDVSREGVQRDLLPLVEGSTVST 293 Query 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 282 KH V T +LFI GAF Sbjct 294 ------KHGM-----VKTDHMLFITSGAFQ------------------------------ 312 Query 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342 +P DLI PE GRLP+ L L+ +IL EP +LT+QY AL Sbjct 313 ------MAKPSDLI-----PELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLA 361 Query 343 LEGVDLEFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVV 397 E V +EF ++ + IA+ A GAR L +++E + + YD S ++ E ++ Sbjct 362 TENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYD-ASEKNGESLI 420 Query 398 ID 399 +D Sbjct 421 VD 422 > sp|Q2KE54|HSLU_RHIEC ATP-dependent protease ATPase subunit HslU OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hslU PE=3 SV=1 Length=435 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + D S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRYIIGQHDAKRAVAIALRNRWRR-QQLDPSLRDEVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 64 TEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 101/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 243 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF V SD Sbjct 290 KTDHILFIASGAFH---------------------VSKPSD------------------- 309 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 L+PE GRLP+ L L++E +IL E + +L +QY+AL E ++L+F D+A+DA+ Sbjct 310 -LLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETENLNLDFTDDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A A+ GAR L++++E L D Y+ P Sbjct 369 ADVAVHLNSSVENIGARRLQTVMERVLDDISYNAP 403 > sp|B2VES3|HSLU_ERWT9 ATP-dependent protease ATPase subunit HslU OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hslU PE=3 SV=1 Length=443 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQ-LDEELRHEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 90.5 bits (223), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 96/215 (45%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK+ ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKVCKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVASPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL N EGV++ F + + Sbjct 318 ---LIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNTEGVNITFTPDGIS 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA A A GAR L +++E + + YD Sbjct 375 KIAAAAWQVNETAENIGARRLHTVLERLMEEISYD 409 > tr|B4F2B3|B4F2B3_PROMH ATP-dependent zinc metalloprotease FtsH OS=Proteus mirabilis (strain HI4320) GN=ftsH PE=3 SV=1 Length=646 Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (36%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > tr|B2VGT3|B2VGT3_ERWT9 ATP-dependent zinc metalloprotease FtsH OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hflB PE=3 SV=1 Length=644 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > tr|Q74RB9|Q74RB9_YERPE Putative magnesium chelatase family protein OS=Yersinia pestis GN=YP_3146 PE=4 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 > tr|B2VI68|B2VI68_ERWT9 Probable magnesium-chelatase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ETA_01830 PE=4 SV=1 Length=506 Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 81/199 (41%), Gaps = 48/199 (24%) Query 17 FCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDD 76 +QH+V + G S+ I +++C +++E K A H E P N Sbjct 138 LSADNQHDVSLISQGESL-IAMHLLEVC-AFLQDEAKLEAAHGEPQECPPASGDLNE--- 192 Query 77 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 136 VIGQ+QAK+ L +A G N+L IGP G+GKT+LA L L+ Sbjct 193 -VIGQQQAKRALEIAAA-----------------GGHNLLFIGPPGTGKTMLASRLNGLM 234 Query 137 DVPFTMADATTLTEAGYV-----GEDVENIIQKLLQKCDY-----------------DVQ 174 ++D L A GE N Q+ + + ++ Sbjct 235 P---PLSDREALESASVASLVNSGELQRNWRQRPYRAPHHSASLYALVGGGSLPKPGEIS 291 Query 175 KAQRGIVYIDEIDKISRKS 193 A GI+++DE+ + R++ Sbjct 292 LAHNGILFLDELPEFERRA 310 > tr|Q0WBE7|Q0WBE7_YERPE Cell division protein OS=Yersinia pestis GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > tr|B5FA73|B5FA73_VIBFM ATP-dependent zinc metalloprotease FtsH OS=Vibrio fischeri (strain MJ11) GN=ftsH PE=3 SV=1 Length=657 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (50%), Gaps = 16/137 (12%) Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELG---KSNI 115 + ++ + T +I+ DD V G ++AK+ + V Y R + S +LG + + Sbjct 137 KSKAKMMTEEQIKTTFDD-VAGCDEAKEDVKELV--DYLR----EPSRFQKLGGKIPTGV 189 Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTL+A+ +A VPF + E +VG + Q +K Sbjct 190 LLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 243 Query 176 AQRGIVYIDEIDKISRK 192 + I++IDEID + R+ Sbjct 244 SSPCIIFIDEIDAVGRQ 260 > tr|Q2K4M2|Q2K4M2_RHIEC ATP-dependent zinc metalloprotease FtsH OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ftsH PE=3 SV=1 Length=643 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 > tr|Q8KKT3|Q8KKT3_RHIEC Probable ATPase (ATP-binding) protein OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_PD00006 PE=4 SV=2 Length=334 Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 11/96 (11%) Query 105 SNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP-FTMADATTLTEAGYVGEDVENIIQ 163 S+G++ + ILL+GP G+GKT+ A LA L +P FT+ +T+ ++GE + Sbjct 116 SHGLQ-PRRKILLVGPPGAGKTMTASALAGELHLPLFTILLDGLITK--FMGETASKL-- 170 Query 164 KLLQKCDYDVQKAQRGIVYIDEIDKI-SRKSDNPSI 198 + +D A RG+ DE D I +R+ D + Sbjct 171 ----RLVFDAMTATRGVYLFDEFDAIGARRGDRQDV 202 > tr|Q3J045|Q3J045_RHOS4 ATP-dependent zinc metalloprotease FtsH OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ftsH PE=3 SV=1 Length=633 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/138 (32%), Positives = 60/138 (43%), Gaps = 20/138 (14%) Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVY-----NHYKRLRNGDTSNGVELGKS 113 + R+ L T + R DD V G ++AK+ L V + RL G G Sbjct 138 KSRAKLLTEKQGRVTFDD-VAGIDEAKEELEEIVEFLRNPQKFSRL-GGKIPKGA----- 190 Query 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173 LL+GP G+GKTLLA +A VPF + E +VG + Q Sbjct 191 --LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----A 242 Query 174 QKAQRGIVYIDEIDKISR 191 +K IV+IDEID + R Sbjct 243 KKNAPCIVFIDEIDAVGR 260 > tr|Q9HV48|Q9HV48_PSEAE ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ftsH PE=3 SV=1 Length=639 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 190 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFDQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 244 KHAPCIIFIDEIDAVGR 260 > sp|Q9JUB0|RUVB_NEIMA Holliday junction ATP-dependent DNA helicase RuvB OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=ruvB PE=3 SV=1 Length=343 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 54/118 (46%), Gaps = 27/118 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 LDDY IGQ +AK+ LA+ + KR D ++LL GP G GKT LA +A Sbjct 37 LDDY-IGQHKAKEQLAIFIQAAKKRGEALD----------HVLLFGPPGLGKTTLAHIIA 85 Query 134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD-YDVQKAQRGIVYIDEIDKIS 190 + L V L AG + LL D +DV ++IDEI ++S Sbjct 86 KELGVNLRQTSGPVLERAGDLA--------ALLTNLDPHDV-------LFIDEIHRLS 128 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2238754140 Database: bact.fasta Posted date: Mar 13, 2016 2:26 PM Number of letters in database: 10,064,135 Number of sequences in database: 31,544 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40