Genome Browsers

UCSC Browser

I choose a 60 kDa ATPase subunit of a protein named Katanin. Katanin is a microtubule-severing AAA protein (ATPases Associated with diverse cellular Activities). It is named after the Japanese sword, katana. This subunit encoded by a gene KATNA1, and ATP and the presence of microtubules for activation.
Short name of a gene: KATNA1
Full name of a gene: katanin catalytic subunit A1
Strand: - (reverse)
Chromosome: 6
Map: 6q25.1
Gene coordinates: 149,594,873 - 149,649,018
Number of products: 3
First product - coding exons: 10, AA: 491
Second product - coding exons: 7, AA: 311
Third product - coding exons: 10, AA: 491

KATNA1 surroundings

Ensembl

Alignment

	    1	    2
	  0.00	  1.02		homo_sapiens_1-54278 1
		  0.00		pan_troglodytes_1-54278 2
Here we can see the distance matrix. It means that on every 100 nucleotides there is about 1.02 mutation, and it must be 1083 different mutations between this species. A total amount of SNP, according to the Ensembl database, is 353737. It means that KATNA1 gene is quite conserved between chimpanzee and humans, but it could differ between other species.


© Gumerov Ruslan, 2017