RID: 0CPTFWWZ013 Job Title:RNA-directed RNA polymerase nsP4 (chain Program: BLASTP Query: RNA-directed RNA polymerase nsP4 (chain from polyprotein POLN_MIDDV (P03318, Polyprotein nsP1234, Middelburg virus) ID: lcl|Query_8378267(amino acid) Length: 610 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 1278 1278 100% 0.0 100.00 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 996 996 100% 0.0 76.62 2432 P08411.2 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 993 993 100% 0.0 77.00 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 987 987 100% 0.0 76.27 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 986 986 100% 0.0 76.10 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 983 983 100% 0.0 76.67 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 982 982 100% 0.0 75.65 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 982 982 100% 0.0 76.67 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 981 981 100% 0.0 76.67 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 978 978 100% 0.0 75.33 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 977 977 100% 0.0 76.35 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 968 968 100% 0.0 75.86 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 932 932 100% 0.0 73.37 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 932 932 100% 0.0 73.53 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 911 911 100% 0.0 72.06 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 910 910 100% 0.0 72.30 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 900 900 100% 0.0 70.16 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 897 897 100% 0.0 72.46 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 891 891 100% 0.0 71.48 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 889 889 100% 0.0 71.64 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 873 873 100% 0.0 70.84 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 871 871 100% 0.0 70.68 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 868 868 100% 0.0 70.35 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 868 868 100% 0.0 69.85 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 866 866 100% 0.0 69.85 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 666 666 99% 0.0 54.49 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 659 659 99% 0.0 54.28 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 71.6 71.6 70% 6e-13 24.27 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 71.2 71.2 49% 8e-13 26.47 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 70.1 70.1 70% 2e-12 24.05 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 69.7 69.7 64% 2e-12 23.44 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 69.7 69.7 64% 2e-12 23.44 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 69.7 69.7 64% 2e-12 23.44 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 69.7 69.7 64% 2e-12 23.56 1616 Q98745.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 69.3 69.3 64% 2e-12 23.75 1616 Q9YQ08.1 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 68.9 68.9 78% 4e-12 20.97 1672 Q84687.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 68.9 68.9 64% 4e-12 22.75 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 68.6 68.6 64% 4e-12 23.75 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 68.6 68.6 64% 4e-12 23.75 1616 P30738.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 67.8 67.8 64% 8e-12 23.75 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 67.8 67.8 64% 9e-12 23.25 1616 Q9YKD6.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Olive latent... NA 650489 65.1 65.1 71% 5e-11 22.89 787 Q83944.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Grapevine le... NA 651354 64.7 64.7 68% 9e-11 23.72 2772 O71189.3 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 64.3 64.3 70% 9e-11 22.99 1707 P05080.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 64.3 64.3 70% 1e-10 22.99 1707 Q9J942.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 63.5 63.5 71% 2e-10 23.58 1612 P89657.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Tomato asper... NA 12315 62.8 62.8 67% 2e-10 22.72 828 P29035.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 62.8 62.8 71% 3e-10 23.58 1612 P29098.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 61.6 61.6 29% 5e-10 28.65 822 P03594.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 62.0 62.0 44% 5e-10 24.82 2512 Q1KZ59.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Pelargonium ... NA 650488 60.8 60.8 69% 8e-10 23.45 687 Q9DUT2.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 60.8 60.8 45% 1e-09 24.29 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 57.8 57.8 70% 1e-08 22.85 1612 Q84133.2 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 57.4 57.4 49% 1e-08 26.62 3094 Q08534.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 56.2 56.2 70% 3e-08 22.94 1612 P89659.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 55.5 55.5 27% 5e-08 26.79 808 P20179.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117114 54.7 54.7 58% 7e-08 25.40 858 Q66117.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Alfamovirus AMV NA 12321 54.3 54.3 38% 1e-07 23.43 790 P03593.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 53.1 53.1 32% 3e-07 28.16 1609 P18339.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12307 52.8 52.8 58% 3e-07 24.86 857 P16490.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117115 52.4 52.4 58% 4e-07 24.86 858 Q86783.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117124 52.4 52.4 58% 4e-07 24.86 857 O40977.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12312 52.0 52.0 58% 5e-07 24.59 857 Q83265.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117116 51.6 51.6 58% 7e-07 24.59 857 Q96711.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 51.2 51.2 68% 1e-06 21.85 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 50.8 50.8 52% 1e-06 23.85 1629 P89202.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117122 50.4 50.4 58% 2e-06 24.32 857 Q66145.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117113 49.7 49.7 58% 2e-06 24.59 857 Q83262.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 117119 48.9 48.9 58% 4e-06 24.32 857 Q66136.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Peanut stunt... NA 12314 48.9 48.9 59% 5e-06 23.64 834 P28727.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 509627 48.1 48.1 23% 1e-05 27.59 1707 Q9IVZ9.1 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 47.0 47.0 59% 2e-05 21.15 1694 Q05983.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=2a pol;... Tobacco stre... NA 12318 45.8 45.8 42% 4e-05 22.88 800 P89678.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686946 45.4 45.4 30% 6e-05 24.87 1896 Q9DRA1.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Broad bean m... NA 12301 45.1 45.1 29% 7e-05 27.12 810 P27462.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Lettuce infe... NA 651355 44.7 44.7 28% 1e-04 24.57 2379 Q83045.2 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 43.9 43.9 42% 2e-04 24.18 1885 P54891.1 RecName: Full=RNA replication protein; AltName: Full=ORF 1... Chrysanthemu... NA 12165 42.0 42.0 24% 3e-04 29.05 260 P37987.1 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 42.7 42.7 68% 5e-04 21.88 1828 Q89249.1 RecName: Full=RNA replication polyprotein; AltName: Full=223 k... Blueberry sc... NA 31722 42.4 42.4 31% 5e-04 24.87 1967 Q65652.1 RecName: Full=RNA replication protein; AltName: Full=152 kDa... Potato virus... NA 12170 42.0 42.0 23% 5e-04 29.08 353 P22657.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 509615 42.0 42.0 23% 7e-04 27.40 1708 Q9YLR1.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 512345 42.0 42.0 23% 8e-04 27.40 1708 Q6J8G2.1 Alignments: >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:1278 bits(3306), Expect:0.0, Method:Compositional matrix adjust., Identities:610/610(100%), Positives:610/610(100%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 505 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA Sbjct 506 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 565 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF Sbjct 566 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 625 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK Sbjct 626 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 685 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF Sbjct 686 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 745 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR Sbjct 746 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 805 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE Sbjct 806 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 865 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK Sbjct 866 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 925 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG Sbjct 926 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 985 Query 601 PVIDLYGGPK 610 PVIDLYGGPK Sbjct 986 PVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2429 Score:996 bits(2574), Expect:0.0, Method:Compositional matrix adjust., Identities:472/616(77%), Positives:537/616(87%), Gaps:11/616(1%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQ L + V EE+++ PK D E+E+LLLL+MQM P+EAN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV------TPTTDCRYVTHKHPKPMYSTSVAFYL 114 KSRYQSRKVENMKA V+DRL GA+L+ PT RY P+P+YS +V Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRY-----PRPVYSPTVIERF 1933 Query 115 SSAKTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKK 174 SS A+AACNE+LSRNYPTV SYQITDEYDAYLDMVDGS+SCLDRA FCP+KLR +PK Sbjct 1934 SSPDVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKH 1993 Query 175 HSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNN 234 H+YH+ +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK+YAC+ Sbjct 1994 HAYHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSG 2053 Query 235 DYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVK 294 +YW+E+A++PIR+TTENIT+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVK Sbjct 2054 EYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVK 2113 Query 295 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDA 354 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDA Sbjct 2114 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDA 2173 Query 355 IISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTH 414 II+ HF PGD VLETDIASFDKSQDDSLA TGLM+LEDLGVDQ LL+LIEA+FGEI+S H Sbjct 2174 IIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCH 2233 Query 415 LPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKS 474 LPTGTRFKFGAMMKSGMFLTLF+NT+LN+TIASRVLE+RLT+S CAAFIGDDNIVHGV S Sbjct 2234 LPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVIS 2293 Query 475 DKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKP 534 DKL+AERCA+W+NMEVKIIDAVM E+PPYFCGGFIVFD VT T CRV+DPLKRLFKLGKP Sbjct 2294 DKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKP 2353 Query 535 LPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHN 594 L AEDKQDEDRRRAL+DE +W R G+ A+LE A+ SRYEVEG ++++ A+ TL+R+ Sbjct 2354 LTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKA 2413 Query 595 FRHLRGPVIDLYGGPK 610 F+ LRGPVI LYGGP+ Sbjct 2414 FKKLRGPVIHLYGGPR 2429 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:993 bits(2568), Expect:0.0, Method:Compositional matrix adjust., Identities:472/613(77%), Positives:534/613(87%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEE-RVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQ+SVRQ L C VHEE R + P D+ +E+LL +MQMAPTEA Sbjct 539 YIFSSDTGPGHLQQKSVRQHALP-CEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEA 597 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD--CRYVTHKHPKPMYSTSVAFYLSSA 117 NKSRYQSRKVENMKA +IDRL GA+ ++T ++ YV+ K+P+P+YS SV L + Sbjct 598 NKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVS-KYPRPVYSPSVEDSLQNP 656 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AVAACN FL NYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+Y Sbjct 657 EVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAY 716 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H+ ++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKK+ACN +YW Sbjct 717 HQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYW 776 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EF PIR+TTENIT+YVTRLKGPKAAALFAKT++L PLQEVPMDRFVVDMKRDVKVTP Sbjct 777 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 836 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 837 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIA 896 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPT Sbjct 897 AHFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPT 956 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+ IA RVL E+LTNS CAAFIGDDNIVHGV+SD L Sbjct 957 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL 1016 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D+VTG+ CRVADPLKRLFKLGKPLPA Sbjct 1017 MAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPA 1076 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D QDEDRRRAL DE RW RVG++++LE A++SRYEV G N++ A+ TL+++ NF+ Sbjct 1077 GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKK 1136 Query 598 LRGPVIDLYGGPK 610 LRGP++ LYGGPK Sbjct 1137 LRGPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:987 bits(2551), Expect:0.0, Method:Compositional matrix adjust., Identities:466/611(76%), Positives:527/611(86%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQ L + EER + P D+ +E+LL +MQMAPTEAN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAKT 119 KSRYQSRKVENMKA +IDRL GA+ ++ ++ K+P+P+YS SV L S + Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 120 AVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHR 179 AVAACN FL NYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+YH+ Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 180 AEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDE 239 ++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW E Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 F PIR+TTENIT+YVTRLKGPKAAALFAKT++L PLQEVPMDRFVVDMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ H Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGT 419 F+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIE +FGEITS HLPTGT Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 420 RFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLA 479 RFKFGAMMKSGMFLTLF+NT+LN+ IA RVL E+LTNS CAAFIGDDNIVHGV+SD L+A Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 480 ERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 ERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D VTG+ CRVADPLKRLFKLGKPLPA D Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 540 KQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLR 599 QDEDRRRAL DE RW RVG++++LE A++SRYEV G N++ A+ TL+++ NF+ LR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 600 GPVIDLYGGPK 610 GP++ LYGGPK Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:986 bits(2550), Expect:0.0, Method:Compositional matrix adjust., Identities:465/611(76%), Positives:533/611(87%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSD GPGHLQQ+SVRQ L + + V EE+V+ PK D+ KE+ LLL++QM T+AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTH-KHPKPMYSTSVAFYLSSAKT 119 +SRYQSRKVENMKA +IDRL G+ +V+ D H ++ KP YS V LSSA Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 120 AVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHR 179 AVA CNEFL+RNYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 180 AEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDE 239 +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV+NVECF+KYACNN+YW+E Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 FA+KPIR+TTEN+T+YVT+LKG KAAALFAKT++L PLQEVPMDRF++DMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIISEH Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGT 419 F+PGD VLETDIASFDKSQDDSLA TGLM+LEDLGVD LL+LIEA+FG+ITS HLPTGT Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 420 RFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLA 479 RFKFGAMMKSGMFLTLF+NT+LN+TIASRVLE RLTNS CAAFIGDDN+VHGV SDKL+A Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 480 ERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 +RCA W+NMEVKIIDAVMC +PPYFCGGF+V+D VT T CR+ADPLKRLFKLGKPLPA+D Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 540 KQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLR 599 QDEDRRRAL DE ++W+R G+ +++E A+ SRY +EG N++ A++T + + NF LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 600 GPVIDLYGGPK 610 GPVI LYGGPK Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:983 bits(2540), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:529/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP +T+ P P+YS S+ LS+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITY--PAPVYSPSINIKLSNP 2020 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2021 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2080 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2081 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2140 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2141 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2200 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2201 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2260 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2261 THFKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2320 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2321 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2380 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2381 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2440 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2441 GDEQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKK 2500 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2501 LRGPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:982 bits(2539), Expect:0.0, Method:Compositional matrix adjust., Identities:463/612(76%), Positives:531/612(86%), Gaps:3/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHE-ERVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQRSVRQ L C HE ER++ P D EKE++L +MQMAPTEA Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELP-CETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEA 1915 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAK 118 NKSRYQSRKVENMKA +++RL GAKL++ TD T K+P+P+YS SV LS+ + Sbjct 1916 NKSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPE 1975 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVAACN FL NYPTV +YQITDEYDAYLD+VDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1976 VAVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYH 2035 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 + +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKKYAC +YW Sbjct 2036 QPQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQ 2095 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EF PIR+TTENIT+YV +LKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2096 EFKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2155 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 2156 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAA 2215 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPTG Sbjct 2216 HFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTG 2275 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLF+NT+LN+ IA RVL ++L++S CAAFIGDDNIVHGV+SD L+ Sbjct 2276 TRFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLM 2335 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D V GT CRVADPLKRLFKLGKPLPA+ Sbjct 2336 AERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPAD 2395 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE +W+R+G++ +L+ A++SRY+V G+ N+ A++TLS+N +FR + Sbjct 2396 DNQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKI 2455 Query 599 RGPVIDLYGGPK 610 RGP+I LYGGPK Sbjct 2456 RGPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:982 bits(2539), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:530/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP +T+ P P+YS S++ L++ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITY--PAPVYSPSISIKLNNP 2020 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2021 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2080 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2081 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2140 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2141 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2200 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS Sbjct 2201 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 2260 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2261 THFKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2320 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2321 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2380 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2381 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2440 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2441 GDEQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKK 2500 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2501 LRGPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:981 bits(2537), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:529/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP VT+ P P+YS S+ L++ Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTY--PAPIYSPSINIKLTNP 2021 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2022 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2081 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2082 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2141 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2142 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2201 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2202 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2261 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2262 THFKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2321 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2322 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2381 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2382 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2441 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2442 GDEQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKK 2501 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2502 LRGPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:978 bits(2528), Expect:0.0, Method:Compositional matrix adjust., Identities:461/612(75%), Positives:530/612(86%), Gaps:3/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHE-ERVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQ+SVRQ L C HE ER++ P D EKE++L +MQMAPTEA Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELP-CETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEA 1915 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAK 118 NKSRYQSRKVENMKA +++RL GAKL++ TD T K+P+P+YS SV LS + Sbjct 1916 NKSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPE 1975 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVAACN FL NYPTV +YQITDEYDAYLD+VDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1976 VAVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYH 2035 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 + +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKKYAC +YW Sbjct 2036 QPQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQ 2095 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EF PIR+TTENIT+YV +LKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2096 EFKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2155 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 2156 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAA 2215 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPTG Sbjct 2216 HFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTG 2275 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLF+NT+LN+ IA RVL ++L++S CAAFIGDDNIVHGV+SD L+ Sbjct 2276 TRFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLM 2335 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D V GT CRVADPLKRLFKLGKPLPA+ Sbjct 2336 AERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPAD 2395 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE +W+R+G++ +L+ A++SRY+V G+ N+ A++TLS++ +FR + Sbjct 2396 DNQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKI 2455 Query 599 RGPVIDLYGGPK 610 RGP+I LYGGPK Sbjct 2456 RGPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:977 bits(2525), Expect:0.0, Method:Compositional matrix adjust., Identities:468/613(76%), Positives:528/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSVRQT L E+V EE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA ++ RL GG KL++ TP T+ P P+YS + LS+ Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTY--PAPVYSPPINIRLSNP 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 ++AVAACNEFL+RNYPTV SYQITDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 1982 ESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVKVTP Sbjct 2102 KEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVD PLL+LIEA+FGEI+S HLPT Sbjct 2222 AHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLE+RLT S CAAFIGDDNI+HGV SD+L Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDEL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ ++ PYFCGGFI++D V GT CRVADPLKRLFKLGKPL A Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAA 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QD+DRRRALADE RW R G+ +LE A++SRYEV+GI V+ ++ T + + NF Sbjct 2402 GDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:968 bits(2503), Expect:0.0, Method:Compositional matrix adjust., Identities:465/613(76%), Positives:527/613(85%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQ+ L E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP T+ P P+YS + LS+ Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTY--PAPVYSPPINVRLSNP 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 ++AVAACNEFL+RNYPTV+SYQITDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+H+Y Sbjct 1982 ESAVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 +EFA PIR+TTEN+T+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVKVTP Sbjct 2102 EEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGD VLETDIASFDKSQDDSLA T LMLLEDLGVD LL+LIEA+FGEI+S HLPT Sbjct 2222 AHFKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLE+RLT S CAAFIGDDNI+HGV SD+L Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDEL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ ++ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAA 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI V+ ++ T + + NF Sbjct 2402 GDEQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:932 bits(2410), Expect:0.0, Method:Compositional matrix adjust., Identities:449/612(73%), Positives:511/612(83%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFS+DTGPGHLQ++SV Q +L + E ER+ AP D KE L L+ QM PTEAN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVEN KA +RLL G +L+ + T +C +T+ PKP+YS+SV S + Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITY--PKPLYSSSVPANYSDPQ 2021 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVA CN +L NYPTV SYQITDEYDAYLDMVDG+ +CLD A FCP+KLRS+PKKH Y Sbjct 2022 FAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYR 2081 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+KYACN++YW+ Sbjct 2082 APNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWE 2141 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EFA+KPIR+TTE +T+YV RLKGPKAAALFAKTY+L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2142 EFARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPG 2201 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+E Sbjct 2202 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAE 2261 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDD++A TGLM+LEDLGVDQPLL+LIE +FGEI+STHLPTG Sbjct 2262 HFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTG 2321 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IASRVLEERL S+CAAFIGDDNI+HGV SDK + Sbjct 2322 TRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEM 2381 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA W+NMEVKIIDAV+ ERPPYFCGGFI+ D VT T CRVADPLKRLFKLGKPLPA+ Sbjct 2382 AERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPAD 2441 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D+QDEDRRRAL DE + W RVGI L A+ +RYEV+ I V+ AL T +++ F+ + Sbjct 2442 DEQDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAI 2501 Query 599 RGPVIDLYGGPK 610 RG + LYGGPK Sbjct 2502 RGEIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:932 bits(2408), Expect:0.0, Method:Compositional matrix adjust., Identities:450/612(74%), Positives:511/612(83%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFS+DTGPGHLQ +SV Q +L + E ER++AP D KE L L+ QM PTEAN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVEN KA +RLL G +L+ + T +C +T+ PKP YS+SVA S K Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITY--PKPSYSSSVAANYSDPK 2023 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVA CN +L NYPTV SYQITDEYDAYLDMVDG+ +CLD A FCP+KLRS+PK+H Y Sbjct 2024 FAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYR 2083 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+KYACN++YW+ Sbjct 2084 APNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWE 2143 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EFA+KPIR+TTE +T+YV RLKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2144 EFARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2203 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+E Sbjct 2204 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAE 2263 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDD++A TGLM+LEDLGVDQPLL+LIE +FGEI+STHLPTG Sbjct 2264 HFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTG 2323 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IASRVLEERL SKCAAFIGDDNI+HGV SDK + Sbjct 2324 TRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEM 2383 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA W+NMEVKIIDAV+ ERPPYFCGGFI+ D VT T CRVADPLKRLFKLGKPLPA+ Sbjct 2384 AERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPAD 2443 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D+QDEDRRRAL DE + W RVGI L A+ +RYEV+ I V+ AL T +++ F+ + Sbjct 2444 DEQDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAI 2503 Query 599 RGPVIDLYGGPK 610 RG + LYGGPK Sbjct 2504 RGEIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:911 bits(2354), Expect:0.0, Method:Compositional matrix adjust., Identities:441/612(72%), Positives:504/612(82%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSV Q A+C+ E E++ APK DK KE +L + QM P+EAN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVENMKAE++ RLL G ++ +C +T+ P P+YSTS LSSAK Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTEHPVECYRITY--PVPIYSTSDLRGLSSAK 1919 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 TAV ACN FL N+P+VTSY+ITDEYDAYLDMVDGSESCLDR++F PS+LRSFPK HSY Sbjct 1920 TAVRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYL 1979 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 +I SAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT DSAV NVE F+KYAC D WD Sbjct 1980 DPQINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWD 2039 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 E+ PI +TTEN+T+YV +LKGPKAAALFAKT++L PL +VPMD+F VDMKRDVKVTPG Sbjct 2040 EYRDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPG 2099 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLN L PN+HTLFDMSAEDFDAII+E Sbjct 2100 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAE 2159 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDDS+A T LM+LEDLGVDQ L+ LIEA+FGEI STHLPTG Sbjct 2160 HFKHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTG 2219 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IA RVLE++L S AFIGDDNI+HG+ SDKL+ Sbjct 2220 TRFKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLM 2279 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 A+RCA WMNMEVKI+D+++ RPPYFCGGFIV D VTGT CRVADPLKRLFKLGKPLP + Sbjct 2280 ADRCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLD 2339 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE + W+RVG++ + A+ RY V V+ ALTTLS+N +FR++ Sbjct 2340 DGQDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNI 2399 Query 599 RGPVIDLYGGPK 610 RG I LYGGPK Sbjct 2400 RGKPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:910 bits(2351), Expect:0.0, Method:Compositional matrix adjust., Identities:441/610(72%), Positives:497/610(81%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SV Q + + E E++ AP D +KE +L + QM+PT AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRYQSRKVENMKA RLL G K++VTP + + +PKPMYS SV S + A Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 2009 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 VA CN F NYPTV SYQITDEYDAYLDMV+GS SCLD A FCP+KLRSFPK HSY Sbjct 2010 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 2069 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKKYACN DYW+EF Sbjct 2070 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 2129 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 +KPIR+TTE +TSYV RLKGP+AAALFAKT+ L PLQEVPMDRFV+DMKRDVKVTPGTK Sbjct 2130 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 2189 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+ +F Sbjct 2190 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 2249 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 VLETDI SFDKSQDDSLA T LM+LEDLGVD L++LIE +FGEITS HLPT T Sbjct 2250 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 2309 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL +SKCAAFIGDDNI+HGV SDK++A+ Sbjct 2310 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 2369 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA WMNMEVKIIDAV+ + PYFCGGFI+ DQVT T CRV+DPLKRLFKLGKPLP +D+ Sbjct 2370 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 2429 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 QD DRRRAL DE + W RVGIQ +L A+ SRYEV+ ++ V+ AL T SR+ F+ LRG Sbjct 2430 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 2489 Query 601 PVIDLYGGPK 610 LYGGPK Sbjct 2490 SPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:900 bits(2325), Expect:0.0, Method:Compositional matrix adjust., Identities:428/610(70%), Positives:504/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+SVRQ +L + + + E+ +AP+ D E+E++L ++Q+ +E N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD---CRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RL+ G +++ + C V +P P+YS++V +SA Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRV--NYPVPIYSSTVINRFTSA 1977 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AV CN + NYPTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRS+PKKHSY Sbjct 1978 EVAVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSY 2037 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 + EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNV+CFKKYACN++YW Sbjct 2038 LQPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYW 2097 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D F PIRLTTEN+T YVT+LKGPKAAALFA T++LKPLQE+PMD+FV+D+KRDVKVTP Sbjct 2098 DTFRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTP 2157 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2158 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2217 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF GD VLETDIASFDKS+DD++A + LM+LEDLGVDQPLL+LIEA+FG ITS HLPT Sbjct 2218 EHFHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPT 2277 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAA IGDDNIVHGV SD L Sbjct 2278 GTRFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTL 2337 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFI+ DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2338 MAERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPV 2397 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYE+ +IT+L+TL+ + NF+ Sbjct 2398 DDTQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKS 2457 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2458 IRGSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:897 bits(2318), Expect:0.0, Method:Compositional matrix adjust., Identities:442/610(72%), Positives:506/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTT---DCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RLL G +++ + +C V +P P+YST+ + SSA Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKV--NYPVPIYSTTRSNRFSSA 1984 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 AV CN L N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 1985 DVAVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2044 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 R EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2045 LRPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2104 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D F PIRLTTEN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2105 DTFKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2164 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2165 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2224 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL+LIEA+FG ITS HLPT Sbjct 2225 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPT 2284 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLTNS CAAFIGDDNIV GVKSD L Sbjct 2285 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDAL 2344 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDA + + PYFCGGFIV DQVTGT CRVADPLKRLFKLGKPLP Sbjct 2345 MAERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPL 2404 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYEV I VITALTTL+ NF++ Sbjct 2405 DDDQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKY 2464 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2465 IRGNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:891 bits(2303), Expect:0.0, Method:Compositional matrix adjust., Identities:436/610(71%), Positives:505/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT---TDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RLL G +++ +C + +P P+YST+ + SSA Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKI--NYPVPVYSTTRSNRFSSA 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 AV CN + N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 1982 DVAVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 + EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2042 LKPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 + F PIRLTTEN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2102 ETFKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL+LIEA+FG ITS HLPT Sbjct 2222 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLTNS CAAFIGDDNIV GVKSD L Sbjct 2282 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDAL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFIV DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2342 MAERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPL 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRY+V I VITAL+TL+ NF+H Sbjct 2402 DDDQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKH 2461 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2462 IRGNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:889 bits(2298), Expect:0.0, Method:Compositional matrix adjust., Identities:437/610(72%), Positives:505/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT---TDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA ++RLL G +++ +C VT+ P PMYS++ + SSA Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTY--PAPMYSSTASNSFSSA 2004 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AV CN L N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 2005 EVAVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2064 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 R EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2065 LRPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2124 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D + PIRLT EN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2125 DFYKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2184 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2185 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2244 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL LIEA+FG ITS HLPT Sbjct 2245 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPT 2304 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLT S CAAFIGDDNIV GV SD L Sbjct 2305 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDAL 2364 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFIV DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2365 MAERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPL 2424 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYEV + +ITALTTL+ + NF+H Sbjct 2425 DDDQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKH 2484 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2485 IRGHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:873 bits(2256), Expect:0.0, Method:Compositional matrix adjust., Identities:430/607(71%), Positives:497/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSRKVENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2187 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A+D+ Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2426 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 PVIDLYG 607 I LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:871 bits(2251), Expect:0.0, Method:Compositional matrix adjust., Identities:429/607(71%), Positives:496/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 1998 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 1999 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2058 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2059 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2118 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2119 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2178 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2179 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2238 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2239 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2298 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2299 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2358 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A+D+ Sbjct 2359 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2418 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI +L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2419 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2478 Query 601 PVIDLYG 607 I LYG Sbjct 2479 APITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:868 bits(2244), Expect:0.0, Method:Compositional matrix adjust., Identities:427/607(70%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATA LCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2187 HTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2426 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI +L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 PVIDLYG 607 I LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:868 bits(2243), Expect:0.0, Method:Compositional matrix adjust., Identities:424/607(70%), Positives:495/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D KE +L ++Q+ PT+AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS SV SS K A Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2012 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKH+Y Sbjct 2013 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2072 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ + Sbjct 2073 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2132 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAAL+AKT++L LQ++PMDRF++D+KRDVKVTPGTK Sbjct 2133 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2192 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2193 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2252 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2253 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2312 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 F+FGAMMKSGMFLTLFVNT++NM IASRVL ERLTNS CAAFIGDDNIV GVKSDKL+A+ Sbjct 2313 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2372 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2373 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2432 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G +I A+TTL+ + +F +LRG Sbjct 2433 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLRG 2492 Query 601 PVIDLYG 607 I LYG Sbjct 2493 APISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:866 bits(2238), Expect:0.0, Method:Compositional matrix adjust., Identities:424/607(70%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D KE +L ++Q+ PT+AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS SV SS K A Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2010 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKH+Y Sbjct 2011 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2070 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ + Sbjct 2071 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2130 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAAL+AKT++L LQ++PMDRF++D+KRDVKVTPGTK Sbjct 2131 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2190 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2191 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2250 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2251 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2310 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 F+FGAMMKSGMFLTLFVNT++NM IASRVL ERLTNS CAAFIGDDNIV GVKSDKL+A+ Sbjct 2311 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2370 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2371 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2430 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G +I A+TTL+ + +F LRG Sbjct 2431 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 2490 Query 601 PVIDLYG 607 I LYG Sbjct 2491 APIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:666 bits(1719), Expect:0.0, Method:Compositional matrix adjust., Identities:334/613(54%), Positives:424/613(69%), Gaps:12/613(1%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLL-----LQMQMA 55 YIFSSD G HL Q + + + + P D LL L QM Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTS-----VLPSNDHGTPDLLAEMKKRLAYQMR 2039 Query 56 PTEANKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLS 115 PT+ NKSRY S KV NMK +++ L GA ++ + PKP YS + Sbjct 2040 PTQKNKSRYLSAKVHNMKHKIVQCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFE 2099 Query 116 SAKTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKH 175 S TA+ A N F+ NYPT++S+ +TD+YDAYLDMVDG LD F P+K+RS PKK Sbjct 2100 SVNTAIVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKKS 2159 Query 176 SYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYAC-NN 234 Y++ I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FKK+AC + Sbjct 2160 KYNQPLIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKDT 2219 Query 235 DYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKP-LQEVPMDRFVVDMKRDV 293 D W EFA+KP+RL+ I YV L+G KA + ++ P L EV MDRF +DMKRDV Sbjct 2220 DLWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRDV 2279 Query 294 KVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFD 353 KVTPGTKH EERPKVQVIQAA+P+ATAYLC IHRELVRRL AVL P++H LFDMS+EDFD Sbjct 2280 KVTPGTKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFD 2339 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 AI+ + GD VLETDI+SFDKSQD ++A T LMLLEDLGV++ LL LIEASFG+ITS Sbjct 2340 AIVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITSV 2399 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVK 473 HLPTGTRF+FG+MMKSG+FLTLFVNT+LN+TIA+RVL E+L +++CAAFIGDDN++ GV Sbjct 2400 HLPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVV 2459 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGK 533 SD ++ RCA+W+NMEVKI++ + +R PYFCGGF++ D VTGT RV+DP+KRL K+GK Sbjct 2460 SDDMMVARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGK 2519 Query 534 PLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYH 593 P + + D DR RAL +E + W RVGIQ L+ A +RY V + A+ TL+++ Sbjct 2520 PALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLR 2579 Query 594 NFRHLRGPVIDLY 606 ++ RG + LY Sbjct 2580 SYLGARGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:659 bits(1700), Expect:0.0, Method:Compositional matrix adjust., Identities:330/608(54%), Positives:418/608(68%), Gaps:2/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSD G HL Q + + + + D E L QM PT+ N Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRLAYQMRPTQKN 2052 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRY S KV NMK +++ L GA ++ + PKP YS + S TA Sbjct 2053 KSRYLSAKVHNMKHKIVRCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2112 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 + A N F+ NYPT++S+ ITD+YDAYLDMVDG LD F P+K+RS PKK Y++ Sbjct 2113 IVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSEYNQP 2172 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYAC-NNDYWDE 239 I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FK +AC + D W E Sbjct 2173 LIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTDLWTE 2232 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKP-LQEVPMDRFVVDMKRDVKVTPG 298 FA+KP+RL+ I YV L+G KA + ++ + P L EV MDRF +DMKRDVKVTPG Sbjct 2233 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVKVTPG 2292 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKH EERPKVQ IQAA+P+ATAYLC IHRELVRRL AVL P++H LFDMS+EDFDAI+ Sbjct 2293 TKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2352 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 + GD VLETDI+SFDKSQD ++A T LMLL DLGV++ LL LIEASFG+ITS HLPTG Sbjct 2353 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAHLPTG 2412 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRF+FG+MMKSG+FLTLFVNT+LN+TIA+RVL E+L +++CAAFIGDDN++ GV SD ++ Sbjct 2413 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2472 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 RCA+W+NMEVKI+D + PYFCGGF++ D VTGT RV+DP+KRL K+GKP + Sbjct 2473 VARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2532 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 + D DR RAL +E + W RVGIQ L+ A +RY V + A+ TL+++ ++ Sbjct 2533 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2592 Query 599 RGPVIDLY 606 RG + LY Sbjct 2593 RGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1148 to 1568 Score:71.6 bits(174), Expect:6e-13, Method:Compositional matrix adjust., Identities:108/445(24%), Positives:177/445(39%), Gaps:39/445(8%) Query 140 ITDEYDAY-LDMVDGSESCLD-RAAFCPSKLRSFPKKHS-YHRAEIRSAVPSPFQNTLQN 196 I +E+DA +++ D S + D R F SK PK+ + + +IR+A P L Sbjct 1148 ILNEFDAVTMNLRDISLNVKDCRIDF--SKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLE 1205 Query 197 VLAAATKRNCNVTQMR-ELPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITS- 254 L A KRN N + + D+A VE F WD + K T E + Sbjct 1206 NLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF---------WDSYVDKEFSGTNEMTMTR 1256 Query 255 -YVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQA 313 +R + ++ + D + +D + +K K +E P +Q I Sbjct 1257 ESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVY 1316 Query 314 AEPLATAYLCGIHRELVRRLNAVLLPNV-HTLFDMSAEDFDAIISEHFRPGDA-----VL 367 A + EL R +LL + + F A I + F D+ +L Sbjct 1317 HSKKINAIFGPMFSELTR----MLLERIDSSKFLFYTRKTPAQIEDFFSDLDSTQAMEIL 1372 Query 368 ETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMM 427 E DI+ +DKSQ++ + E LG+D+ L E+ + + T G + Sbjct 1373 ELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTTLKDYTAGVKTCLWYQR 1432 Query 428 KSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVH---GVKSDKLLAERCAA 484 KSG T NT++ S ++ + AAF GDD++++ G+ + A Sbjct 1433 KSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGDDSLIYIPKGLDLPDIQAGANLM 1490 Query 485 WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDED 544 W N E K+ ++ YFCG +++ DPLK + KLG + E+ Sbjct 1491 W-NFEAKLFR----KKYGYFCGRYVIHHDRGAIV--YYDPLKLISKLGCKHIRDVVHLEE 1543 Query 545 RRRALADEAQRWNRVGIQADLEAAM 569 R +L D A N + L+ A+ Sbjct 1544 LRESLCDVASNLNNCAYFSQLDEAV 1568 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1293 to 1584 Score:71.2 bits(173), Expect:8e-13, Method:Compositional matrix adjust., Identities:81/306(26%), Positives:132/306(43%), Gaps:22/306(7%) Query 272 YDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVR 331 YD L + R ++ + K+ + E P +Q I A I EL R Sbjct 1293 YDFVDLPAIDQYRHIIKSQPKQKLDLSIQ--SEYPSLQTIVYHSKKINALFGPIFSELTR 1350 Query 332 RLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-----VLETDIASFDKSQDDSLAYTG 386 ++ + + + + F + I E F DA VLE D++ +DKSQ++ Sbjct 1351 QMLSAIDTSRYLFFTRKTPE---QIEEFFSDLDAHQPMEVLELDVSKYDKSQNEFHCAVE 1407 Query 387 LMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTI 445 + + LG+D+ L E+ + + T G + KSG T NT ++ + Sbjct 1408 YEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACM 1467 Query 446 ASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL-LAERCAAWM-NMEVKIIDAVMCERPPY 503 AS + E++ AAF GDD++V+ K +L + CA M N E K+ Y Sbjct 1468 ASMLPMEKVIK---AAFCGDDSLVYLPKGCELPNIQSCANLMWNFEAKLFKKTY----GY 1520 Query 504 FCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQA 563 FCG +++ G V DPLK + KLG + + E+ R +LAD ++ N A Sbjct 1521 FCGRYVIHHD-RGAIVYV-DPLKIISKLGAKHITDKEHLEEFRISLADVSKSLNNCAYYA 1578 Query 564 DLEAAM 569 L+ A+ Sbjct 1579 QLDEAV 1584 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 1144 to 1564 Score:70.1 bits(170), Expect:2e-12, Method:Compositional matrix adjust., Identities:108/449(24%), Positives:178/449(39%), Gaps:47/449(10%) Query 140 ITDEYDAY-LDMVDGSESCLD-RAAFCPSKLRSFPKKHS-YHRAEIRSAVPSPFQNTLQN 196 I +E+DA +++ D S + D R F SK PK+ + + ++R+A P L Sbjct 1144 ILNEFDAVTMNLRDISLNVKDCRIDF--SKSVQVPKERPVFMKPKLRTAAEMPRTAGLLE 1201 Query 197 VLAAATKRNCNVTQMR-ELPTLDSAVFNVECFKKYACNNDYWDEFAQKP------IRLTT 249 L A KRN N + + D+A VE F WD + K + +T Sbjct 1202 NLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF---------WDAYVVKEFSGTDGMAMTR 1252 Query 250 ENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQ 309 E+ + ++++ + L D + +D + +K K +E P +Q Sbjct 1253 ESFSRWLSKQESSTVGQL----ADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQ 1308 Query 310 VIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTL-FDMSAEDFDAIISEHFRPGDA--- 365 I A + EL R +LL + T F I E F D+ Sbjct 1309 TIVYHSKKINAIFGPMFSELTR----MLLETIDTSKFLFYTRKTPTQIEEFFSDLDSSQA 1364 Query 366 --VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKF 423 +LE DI+ +DKSQ++ + E LG+D L E+ + T G + Sbjct 1365 MEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLKDYTAGIKTCL 1424 Query 424 GAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVH---GVKSDKLLAE 480 KSG T NT++ S ++ + AAF GDD++++ G+ + A Sbjct 1425 WYQRKSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGDDSLIYIPKGLDLPDIQAG 1482 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 W N E K+ ++ YFCG +++ DPLK + KLG ++ Sbjct 1483 ANLTW-NFEAKLFR----KKYGYFCGRYVIHHDRGAIV--YYDPLKLISKLGCKHIRDEV 1535 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAM 569 E+ RR+L D N + L+ A+ Sbjct 1536 HLEELRRSLCDVTSNLNNCAYFSQLDEAV 1564 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 1200 to 1580 Score:69.7 bits(169), Expect:2e-12, Method:Compositional matrix adjust., Identities:94/401(23%), Positives:158/401(39%), Gaps:32/401(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S V ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N + + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 E P +Q I A + EL R+L + + F EDF Sbjct 1312 DLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE D++ +DKSQ++ + LG++ L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMT-IASRVLEERLTNSKCAAFIGDDNIVH-- 470 G + KSG T NT++ + +AS + E+L AF GDD++++ Sbjct 1430 DYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLLYFP 1486 Query 471 -GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 G + + W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMN 570 KLG + E+ RR+L D A+ N L+ A+ Sbjct 1540 KLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVG 1580 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 1200 to 1580 Score:69.7 bits(169), Expect:2e-12, Method:Compositional matrix adjust., Identities:94/401(23%), Positives:158/401(39%), Gaps:32/401(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S V ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N + + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 E P +Q I A + EL R+L + + F EDF Sbjct 1312 DLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE D++ +DKSQ++ + LG++ L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMT-IASRVLEERLTNSKCAAFIGDDNIVH-- 470 G + KSG T NT++ + +AS + E+L AF GDD++++ Sbjct 1430 DYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLLYFP 1486 Query 471 -GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 G + + W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMN 570 KLG + E+ RR+L D A+ N L+ A+ Sbjct 1540 KLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVG 1580 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 1200 to 1580 Score:69.7 bits(169), Expect:2e-12, Method:Compositional matrix adjust., Identities:94/401(23%), Positives:158/401(39%), Gaps:32/401(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S V ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N + + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 E P +Q I A + EL R+L + + F EDF Sbjct 1312 DLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE D++ +DKSQ++ + LG++ L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMT-IASRVLEERLTNSKCAAFIGDDNIVH-- 470 G + KSG T NT++ + +AS + E+L AF GDD++++ Sbjct 1430 DYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLLYFP 1486 Query 471 -GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 G + + W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMN 570 KLG + E+ RR+L D A+ N L+ A+ Sbjct 1540 KLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVG 1580 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 1200 to 1579 Score:69.7 bits(169), Expect:2e-12, Method:Compositional matrix adjust., Identities:94/399(24%), Positives:157/399(39%), Gaps:30/399(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNVSLFSRESLNRWLEKQERVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 T E P +Q I A + EL R+L + + F EDF Sbjct 1312 DTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE DI+ +DKSQ++ + LG + L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLRMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKL--LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFK 530 K + + N E K+ ++ YFCG +I+ C DPLK + K Sbjct 1487 KGCEFPDIQHSVNLMWNFEAKLFK----KQYGYFCGRYIIHHD--RGCIVYYDPLKLISK 1540 Query 531 LGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 LG + + E+ RR+L D A N L+ A+ Sbjct 1541 LGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 1200 to 1579 Score:69.3 bits(168), Expect:2e-12, Method:Compositional matrix adjust., Identities:95/400(24%), Positives:161/400(40%), Gaps:32/400(8%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFD----MSAEDFD 353 T E P +Q I +A + EL R+L + + F EDF Sbjct 1312 DTSIQTEYPALQTIVYHSKKISAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE DI+ +DKSQ++ + LG + L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKLLAERCAA---WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 K + + +A W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 KLG + + E+ RR+L D A N L+ A+ Sbjct 1540 KLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 1170 to 1647 Score:68.9 bits(167), Expect:4e-12, Method:Compositional matrix adjust., Identities:104/496(21%), Positives:198/496(39%), Gaps:36/496(7%) Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSK-LRSFPKKHSYHR 179 + + R +P ++ + +D Y E + P+K +R F +K + Sbjct 1170 LVTIQDLYDRTFPGNST--LDSSFDGYTVASSDLELEISNCKIAPNKSIRGFQEKICFS- 1226 Query 180 AEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDE 239 ++R+A+P Q + + A KRN +++E + + K ++C + D Sbjct 1227 PKLRTAMPEKRQGSFAESILALRKRNMACPRLQE-SVNEHQIIEDTIAKAFSCY--FTDS 1283 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 F + +T E+ + + + A D + L ++ + + +K DVK Sbjct 1284 FVDQSPLITDESALRWWEKQSTTAKNQMLA---DWRTLDQIDVCTYNFMIKNDVKPKLDL 1340 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 E +Q + E + + +E+ R+ + L PNV M++E+ +E+ Sbjct 1341 TPQSEYAALQTVVYPEKIVNGLFGPVIKEINERVLSALKPNVFVNTRMTSEELSR-TAEY 1399 Query 360 FRPGD--AVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 PGD V+E D + +DKS+ + L E G++ + L E S + Sbjct 1400 LYPGDEFEVVEIDFSKYDKSKTSLHIRMVIKLYEQFGLNGYMKYLWEKSQTQTVVKDRNY 1459 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 G KSG T NT +M L + + + F GDD+++ K + Sbjct 1460 GVEAYILYQQKSGNCDTYGSNTYSSMFALLDCLP--MEKAVYSIFGGDDSLILFPKGTII 1517 Query 478 --LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG-KP 534 R A+ N + K M R P FCG F++ V G DP+K + KLG K Sbjct 1518 NDPCGRLASLWNFDCK----SMKFRVPAFCGKFLI--PVGGRYRFEPDPMKLITKLGNKT 1571 Query 535 LPAEDKQDEDRRR-----------ALADEAQRWNRVGIQADLEAAMNSRYEVEGI-RNVI 582 + E K + R+ ++ D + ++ + L A+ RY+ + + + Sbjct 1572 IAIEGKTKAEVRKNGSKLLSEIYVSICDNYKNYDDARVLDALAYALVDRYKPDICPKAAL 1631 Query 583 TALTTLSRNYHNFRHL 598 +L+ +++ +F L Sbjct 1632 YSLSKFLKSFESFTEL 1647 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 1200 to 1580 Score:68.9 bits(167), Expect:4e-12, Method:Compositional matrix adjust., Identities:91/400(23%), Positives:158/400(39%), Gaps:30/400(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNVSLFCRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 T E P +Q I A + EL R++ + + F EDF Sbjct 1312 DTSIQSEYPALQTIVYHSKKINAIFGPLFSELTRQMLESIDSSKFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D +LE DI+ +DKSQ++ + LG++ L E+ + + T Sbjct 1372 GDLDSHV-PMD-ILELDISKYDKSQNEFHCAVEYEIWRRLGLEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKL--LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFK 530 K + + N E K+ ++ YFCG +++ C DPLK + K Sbjct 1487 KGCEFPDIQHTANLMWNFEAKLFR----KQYGYFCGRYVIHHD--RGCIVYYDPLKLISK 1540 Query 531 LGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMN 570 LG + E+ RR+L D A N L+ A++ Sbjct 1541 LGAKHIKDWDHLEEFRRSLCDVANSLNNCAYYTQLDDAVS 1580 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 1200 to 1579 Score:68.6 bits(166), Expect:4e-12, Method:Compositional matrix adjust., Identities:95/400(24%), Positives:160/400(40%), Gaps:32/400(8%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 T E P +Q I A + EL R+L + + F EDF Sbjct 1312 DTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE DI+ +DKSQ++ + LG + L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKLLAERCAA---WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 K + + +A W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 KLG + + E+ RR+L D A N L+ A+ Sbjct 1540 KLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 1200 to 1579 Score:68.6 bits(166), Expect:4e-12, Method:Compositional matrix adjust., Identities:95/400(24%), Positives:160/400(40%), Gaps:32/400(8%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFD----MSAEDFD 353 T E P +Q I A + EL R+L + + F EDF Sbjct 1312 DTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE DI+ +DKSQ++ + LG + L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKLLAERCAA---WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 K + + +A W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 KLG + + E+ RR+L D A N L+ A+ Sbjct 1540 KLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 1200 to 1579 Score:67.8 bits(164), Expect:8e-12, Method:Compositional matrix adjust., Identities:95/400(24%), Positives:159/400(39%), Gaps:32/400(8%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S + ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N++ + + R + + D + +D++ K K Sbjct 1252 LKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMYKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFD----MSAEDFD 353 T E P +Q I A + EL R+L + + F EDF Sbjct 1312 DTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE DI+ +DKSQ++ + LG + L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGV 472 G + KSG T NT ++ +AS + E++ AF GDD++++ Sbjct 1430 DYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIK---GAFCGDDSLLYFP 1486 Query 473 KSDKLLAERCAA---WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 K + + +A W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 KLG + + E+ RR+L D A N L+ A+ Sbjct 1540 KLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV 1579 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 1200 to 1579 Score:67.8 bits(164), Expect:9e-12, Method:Compositional matrix adjust., Identities:93/400(23%), Positives:158/400(39%), Gaps:32/400(8%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A P Q L L A KRN N ++ S V ++E + ++D + Sbjct 1200 VRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDK-FFDSYL 1251 Query 242 QKPIRLTTENITSY----VTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 K R +N + + + R + + D + +D++ +K K Sbjct 1252 LKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKL 1311 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSA----EDFD 353 E P +Q I A + EL R+L + + F EDF Sbjct 1312 DLSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQIEDFF 1371 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 + H P D VLE D++ +DKSQ++ + LG++ L E+ + + T Sbjct 1372 GDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHRKTTLK 1429 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMT-IASRVLEERLTNSKCAAFIGDDNIVH-- 470 G + KSG T NT++ + +AS + E+L AF GDD++++ Sbjct 1430 DYTAGIKTCLWYQRKSGDVTTFIGNTVIIASCLASMLPMEKLIK---GAFCGDDSLLYFP 1486 Query 471 -GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 G + + W N E K+ ++ YFCG +++ C DPLK + Sbjct 1487 KGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHHD--RGCIVYYDPLKLIS 1539 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAM 569 KLG + E+ RR+L + A+ N L+ A+ Sbjct 1540 KLGAKHIKDWDHLEEFRRSLCNVAESLNNCAYYTQLDDAV 1579 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Olive latent virus 2 isolate Italy] Sequence ID: Q83944.1 Length: 787 Range 1: 331 to 741 Score:65.1 bits(157), Expect:5e-11, Method:Compositional matrix adjust., Identities:106/463(23%), Positives:180/463(38%), Gaps:81/463(17%) Query 171 FPKKHSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT-LDSAVFNVECFKK 229 F +K + + IR+ + P T + +L A +KRN QM E+P + F+ Sbjct 331 FRRKPDFAVSSIRTGLEMPRIATKKEMLMAFSKRNVGAPQMVEVPQEIHVKRLADRFFRT 390 Query 230 Y-------ACNNDYWDEFAQKPIR--LTTEN-----ITSYVTRLKGPKAAALFAKTYDLK 275 + + YWD+F + R + EN ++SY+ LK Sbjct 391 FLKEGGWDKGDGHYWDDFFHRKGRKVFSLENCYDDPLSSYLVMLKS-------------- 436 Query 276 PLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNA 335 +F +D+ V+ P T E+ E + +L + R R + Sbjct 437 ------AGKFSLDLNFPVRSVPQTITYHEK------WVTEVFSPMFLQVMARFFSRLQDW 484 Query 336 VLLPNVHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGV 395 V++P DF + G + E D++ FDKSQ L + LG Sbjct 485 VVVPA------GPMADFSRVWPSF--EGKCLTEIDLSKFDKSQGKLLHDVQREIFLRLGF 536 Query 396 DQPLLELIEASFGEITSTHLP---TGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEE 452 P+ F E S++L G F ++G T F NT++ M + + V E Sbjct 537 -PPIWCDWWFKFHE--SSYLNDKNLGIAFSVDYQRRTGNTATYFGNTLVTMIMMAEVYEL 593 Query 453 RLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAW---MNMEVKIIDAVMCERPP--YFCGG 507 + C F GDDN++ +D+ L R + + NME K++ RP Y C Sbjct 594 D-SLPFCGLFSGDDNLI---VTDRPLEGRVSLFPNMFNMEAKVM------RPGQNYMCSK 643 Query 508 FIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEA 567 ++ V G V DP K L K G P E +D + D + R ++ + Sbjct 644 YLC--TVDGRVTPVPDPFKLLKKAGASCPLE--HLDDFYESFLDYTKYLVRDEVRTLIPR 699 Query 568 AMNSRYEVE------GIRNVITALTTLSRNYHNFRHLRGPVID 604 M RY+V + +++ + ++ + +F++ R P+ D Sbjct 700 LMAHRYQVSMDEAGVALDQIMSWRKSKTQFFKHFQY-RKPIKD 741 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71189.3 Length: 2772 Range 1: 2318 to 2729 Score:64.7 bits(156), Expect:9e-11, Method:Compositional matrix adjust., Identities:102/430(24%), Positives:172/430(40%), Gaps:31/430(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNV-ECFKKYACNNDYWDEF 240 IRS+V P +NTL+ L RN N + + DS + E F + N E Sbjct 2318 IRSSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEV 2377 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKV----T 296 + + T ++ ++ + + P A + + + + +K DVK T Sbjct 2378 TESHLSSNTMLLSDWLDK-RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNT 2436 Query 297 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII 356 P +K+ Q I + TA I V RL V+ M + A + Sbjct 2437 PLSKYVTG----QNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAAL 2492 Query 357 SEHFRPGDA----VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITS 412 + GD E DI+ +DKSQ + ++L LGVD+ +L GE S Sbjct 2493 RNNL--GDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFC--GEYDS 2548 Query 413 THLPTGTR---FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIV 469 + T T+ G+ +SG T N+++ T+ S VL R + GDD+++ Sbjct 2549 V-VRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVL--RGLDYSYIVVSGDDSLI 2605 Query 470 HGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 + + + +VKI + + PYFC F+V QV + V DPLK Sbjct 2606 FSRQPLDIDTSVLSDNFGFDVKIFN----QAAPYFCSKFLV--QVEDSLFFVPDPLKLFV 2659 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEG-IRNVITALTTL 588 K G ++ + ++ D ++ +NR + +L + +Y+ G + + L L Sbjct 2660 KFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKYKHSGWTYSALCVLHVL 2719 Query 589 SRNYHNFRHL 598 S N+ F L Sbjct 2720 SANFSQFCRL 2729 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 1261 to 1675 Score:64.3 bits(155), Expect:9e-11, Method:Compositional matrix adjust., Identities:100/435(23%), Positives:179/435(41%), Gaps:27/435(6%) Query 171 FPKKHSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKY 230 F +K ++ + IR+A+P + T L A KRN ++E + + V E KK Sbjct 1261 FAEKETFLKPVIRTAMPDKRKTTQLESLLALQKRNQAAPDLQE--NVHATVLIEETMKKL 1318 Query 231 ACNNDYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTY-DLKPLQEVPMDRFVVDM 289 + PI + + R ++ A+ AK D++ L E+ ++ + Sbjct 1319 KSVVYDVGKIRADPIVNRAQ-----MERWWRNQSTAVQAKVVADVRELHEIDYSSYMYMI 1373 Query 290 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFD--M 347 K DVK E +Q + E L + I +E+ R + P H +F+ M Sbjct 1374 KSDVKPKTDLTPQFEYSALQTVVYHEKLINSLFGPIFKEINERKLDAMQP--HFVFNTRM 1431 Query 348 SAEDF-DAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEAS 406 ++ D D + + +E D++ FDKS + L + G+D+ L E S Sbjct 1432 TSSDLNDRVKFLNTEAAYDFVEIDMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVS 1491 Query 407 FGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDD 466 + T + G KSG T N+ + T+ + + E L + + GDD Sbjct 1492 HTQTTVRDIQNGMMAHIWYQQKSGDADTYNANS--DRTLCALLSELPLEKAVMVTYGGDD 1549 Query 467 NIVHGVKSDKLL--AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCR-VAD 523 +++ + + + + A N E KI + P FCG F++ T +C V D Sbjct 1550 SLIAFPRGTQFVDPCPKLATKWNFECKIFKYDV----PMFCGKFLL---KTSSCYEFVPD 1602 Query 524 PLKRLFKLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVIT 583 P+K L KLGK + + + +L D + + + L +++ RY +G + + Sbjct 1603 PVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKG--DSVH 1660 Query 584 ALTTLSRNYHNFRHL 598 AL L ++ +F L Sbjct 1661 ALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 1261 to 1675 Score:64.3 bits(155), Expect:1e-10, Method:Compositional matrix adjust., Identities:100/435(23%), Positives:179/435(41%), Gaps:27/435(6%) Query 171 FPKKHSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKY 230 F +K ++ + IR+A+P + T L A KRN ++E + + V E KK Sbjct 1261 FAEKETFLKPVIRTAMPDKRKTTQLESLLALQKRNQAAPDLQE--NVHATVLIEETMKKL 1318 Query 231 ACNNDYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTY-DLKPLQEVPMDRFVVDM 289 + PI + + R ++ A+ AK D++ L E+ ++ + Sbjct 1319 KSVVYDVGKIRADPIVNRAQ-----MERWWRNQSTAVQAKVVADVRELHEIDYSSYMFMI 1373 Query 290 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFD--M 347 K DVK E +Q + E L + I +E+ R + P H +F+ M Sbjct 1374 KSDVKPKTDLTPQFEYSALQTVVYHEKLINSLFGPIFKEINERKLDAMQP--HFVFNTRM 1431 Query 348 SAEDF-DAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEAS 406 ++ D D + + +E D++ FDKS + L + G+D+ L E S Sbjct 1432 TSSDLNDRVKFLNTEAAYDFVEIDMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVS 1491 Query 407 FGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDD 466 + T + G KSG T N+ + T+ + + E L + + GDD Sbjct 1492 HTQTTVRDIQNGMMAHIWYQQKSGDADTYNANS--DRTLCALLSELPLEKAVMVTYGGDD 1549 Query 467 NIVHGVKSDKLL--AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCR-VAD 523 +++ + + + + A N E KI + P FCG F++ T +C V D Sbjct 1550 SLIAFPRGTQFVDPCPKLATKWNFECKIFKYDV----PMFCGKFLL---KTSSCYEFVPD 1602 Query 524 PLKRLFKLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVIT 583 P+K L KLGK + + + +L D + + + L +++ RY +G + + Sbjct 1603 PVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKG--DSVH 1660 Query 584 ALTTLSRNYHNFRHL 598 AL L ++ +F L Sbjct 1661 ALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 1158 to 1580 Score:63.5 bits(153), Expect:2e-10, Method:Compositional matrix adjust., Identities:104/441(24%), Positives:171/441(38%), Gaps:28/441(6%) Query 140 ITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKK-HSYHRAEIRSAVPSPFQNTLQNVL 198 I +EYDA + + + SK P++ + + IR+A P + L L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENL 1217 Query 199 AAATKRNCNVTQMRELPTL-DSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITSYVT 257 A KRN N ++ + + D+A V+ F + Y + +KP + + S + Sbjct 1218 VAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYLIKEKKKPKNIPLLSRAS-LE 1271 Query 258 RLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPL 317 R + + + D + +D++ +K+ K E P +Q I Sbjct 1272 RWIEKQEKSTIGQLADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKK 1331 Query 318 ATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-----VLETDIA 372 A + EL R+L + + F I E F D+ +LE DI+ Sbjct 1332 INALFGPVFSELTRQLLETI---DSSRFMFYTRKTPTQIEEFFSDLDSNVPMDILELDIS 1388 Query 373 SFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMF 432 +DKSQ++ + + LG+D L E+ + + T G + KSG Sbjct 1389 KYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDV 1448 Query 433 LTLFVNTMLNMTIASRVLE-ERLTNSKCAAFIGDDNIVHGVKSDKL--LAERCAAWMNME 489 T NT++ S +L ERL AF GDD+I++ K + + N E Sbjct 1449 TTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQQGANLLWNFE 1505 Query 490 VKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRAL 549 K+ +R YFCG +I+ C DPLK + KLG + E+ R +L Sbjct 1506 AKLFR----KRYGYFCGRYIIHHD--RGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSL 1559 Query 550 ADEAQRWNRVGIQADLEAAMN 570 D A N L+ A+ Sbjct 1560 CDVAGSLNNCAYYTHLDDAVG 1580 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Tomato aspermy virus] Sequence ID: P29035.1 Length: 828 Range 1: 355 to 749 Score:62.8 bits(151), Expect:2e-10, Method:Compositional matrix adjust., Identities:97/427(23%), Positives:163/427(38%), Gaps:53/427(12%) Query 193 TLQNVLAAATKRNCNVTQMRELPTLDSAVFNV-ECFKKYACNNDYWDEFAQKPIRLTTEN 251 T + VL A KRN +V ++ L +V ECF N D +L + N Sbjct 355 TTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLSFMNGD----------KLCSSN 404 Query 252 ITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP---- 306 + V+ + +YD P +F M K DVK + +RP Sbjct 405 FINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTDTLNIDRPLPAT 464 Query 307 ----KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRP 362 + Q+ PL TA R L +R V+LP V + + +DF + Sbjct 465 ITFHRKQLTSQFSPLFTALFQRFQRCLTKR---VILP-VGKISSLEIKDFSVL------- 513 Query 363 GDAVLETDIASFDKSQDDSLAYTGLMLLEDLG----VDQPLLELIEASFGEITSTHLPTG 418 LE D++ FDKSQ + +L LG + + + S+ + G Sbjct 514 NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKR----AG 569 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 ++G T F NT++ M++ + + + F GDD++ +K+ Sbjct 570 VSMPISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDK--LIFSGDDSLGFSIKAPVGD 627 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGK---PL 535 + NME K+++ + PY C F++ D G V DPL+ + +LG PL Sbjct 628 PSLFTSLFNMEAKVMEPSV----PYICSKFLLTDDF-GNTFSVPDPLREIQRLGSKKIPL 682 Query 536 PAEDKQDEDRRRALADEAQRWNRVG----IQADLEAAMNSRYEVEGIRNVITALTTLSRN 591 +D+ + D + N + Q L M R + I V+ A + N Sbjct 683 DEDDRSLHAHFMSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTAN 742 Query 592 YHNFRHL 598 ++ ++ L Sbjct 743 FNAYKEL 749 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 1158 to 1580 Score:62.8 bits(151), Expect:3e-10, Method:Compositional matrix adjust., Identities:104/441(24%), Positives:170/441(38%), Gaps:28/441(6%) Query 140 ITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKK-HSYHRAEIRSAVPSPFQNTLQNVL 198 I +EYDA + + + SK P++ + + IR+A P + L L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENL 1217 Query 199 AAATKRNCNVTQMRELPTL-DSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITSYVT 257 A KRN N ++ + + D+A V+ F + Y + +KP + + S + Sbjct 1218 VAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYLIKEKKKPKNIPLLSRAS-LE 1271 Query 258 RLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPL 317 R + + + D + +D++ +K+ K E P +Q I Sbjct 1272 RWIEKQEKSTIGQLADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKK 1331 Query 318 ATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-----VLETDIA 372 A + EL R+L + + F I E F D+ +LE DI+ Sbjct 1332 INALFGPVFSELTRQLLETI---DSSRFMFYTRKTPTQIEEFFSDLDSNVPMDILELDIS 1388 Query 373 SFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMF 432 +DKSQ++ + + LG+D L E+ + + T G + KSG Sbjct 1389 KYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDV 1448 Query 433 LTLFVNTMLNMTIASRVLE-ERLTNSKCAAFIGDDNIVHGVKSDKL--LAERCAAWMNME 489 T NT++ S +L ERL AF GDD+I++ K + + N E Sbjct 1449 TTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQQGANLLWNFE 1505 Query 490 VKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRAL 549 K+ +R YFCG +I+ C DPLK + KLG + E+ R +L Sbjct 1506 AKLFR----KRYGYFCGRYIIHHD--RGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSL 1559 Query 550 ADEAQRWNRVGIQADLEAAMN 570 D A N L A+ Sbjct 1560 CDVAGSLNNCAYYTHLNDAVG 1580 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 462 to 629 Score:61.6 bits(148), Expect:5e-10, Method:Compositional matrix adjust., Identities:51/178(29%), Positives:84/178(47%), Gaps:13/178(7%) Query 367 LETDIASFDKSQDD-SLAYTGLMLLEDLGVDQPLLELIEASFGE--ITSTHLPTGTRFKF 423 LE D++ FDKSQ + L + +LL LG PL + ++ H G F Sbjct 462 LEADLSKFDKSQGELHLEFQREILLA-LGFPAPLTNWWSDFHRDSYLSDPHAKVGMSVSF 520 Query 424 GAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCA 483 ++G T F NT++ M + + + L++ CA F GDD+++ L + Sbjct 521 --QRRTGDAFTYFGNTLVTMAMIAYASD--LSDCDCAIFSGDDSLIISKVKPVLDTDMFT 576 Query 484 AWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQ 541 + NME+K++D + PY C F+V ++ G V DPL+ + +L K D+Q Sbjct 577 SLFNMEIKVMDPSV----PYVCSKFLVETEM-GNLVSVPDPLREIQRLAKRKILRDEQ 629 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 2204 to 2470 Score:62.0 bits(149), Expect:5e-10, Method:Compositional matrix adjust., Identities:68/274(25%), Positives:115/274(41%), Gaps:14/274(5%) Query 309 QVIQAAEPLATAYLCGIHRELVRRLNAVLL--PNVHTLFDMSAEDFDAIISEHF----RP 362 QV+ A C I R + + ++L N+ DM + F +++E + Sbjct 2204 QVVLHQTKDINAVFCVIWRGIKTVVQSMLRHHNNIFMFADMDPDSFADLLTEKVSTKVQE 2263 Query 363 GDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFK 422 LE DI +DKSQD + LL GV + L+ + S E +G +FK Sbjct 2264 TFDSLEIDIKKYDKSQDLKVLLLECKLLRYFGVSEELVIIWFKSHVESIVKDRRSGLKFK 2323 Query 423 FGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSD-KLLAER 481 +SG T NT+ + + +R + R K A F GDD+++ G K D + ++ Sbjct 2324 VQVQRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQN 2381 Query 482 CAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQ 541 + N++VK + +FC F++ V + DP+K +L + Sbjct 2382 FSDLFNLDVKFFPNF---KYYHFCSKFLI--AVEDRWYFIPDPVKLCIRLARLDLVNWGH 2436 Query 542 DEDRRRALADEAQRWNRVGIQADLEAAMNSRYEV 575 E+ R +L D + + I +L A+ RY V Sbjct 2437 IEEYRISLKDTTKYYCDDSIVRELSKAVCDRYPV 2470 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT2.1 Length: 687 Range 1: 258 to 660 Score:60.8 bits(146), Expect:8e-10, Method:Compositional matrix adjust., Identities:106/452(23%), Positives:183/452(40%), Gaps:79/452(17%) Query 177 YHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK----YAC 232 Y++ E+ + S T + L A KRN +V ++ + ++D + KK Y C Sbjct 258 YYQPELFAGASSRRIGTQKEALVAIRKRNADVPELAD--SVDVERLSESVAKKFLSSYVC 315 Query 233 NNDYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRD 292 + KP+ E + +Y + G K +F L+E + R+ +K D Sbjct 316 D--------LKPVVGVMEKMRAYHQKW-GDKIDPMFL-------LKEHNLQRYEHMIKTD 359 Query 293 VKVTPG-TKHTEERPKVQVIQAAEPLATAY---LCGIHRELVRRLNA-VLLPN--VHTLF 345 VK T + H E + + + + + E + L+ V++P+ + T+ Sbjct 360 VKPTVAHSMHVERAIPATITFHGKSICAGFSPSFTALFDEFQKSLDERVVIPSGPISTI- 418 Query 346 DMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLE-------DLGVDQP 398 DFD I ++++ LE D++ FDKSQ GL+ LE +G+ Sbjct 419 ---EMDFD-IRNKYY------LEVDLSKFDKSQ-------GLLHLEFQRKILCKIGLPAH 461 Query 399 LLELIEASFGEITSTHLPTG-TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNS 457 L F + P F ++G T F NT++ M + S + R Sbjct 462 LANWW-CDFHYKSFISDPRAKVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEK 520 Query 458 KCAAFIGDDNIVHGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGT 517 F GDD++ ++ + NME KI+D + PY C F+V D++ G Sbjct 521 --MLFAGDDSLAISSSPIVGCSDYFVSLFNMEAKIMDPGV----PYICSKFLVSDEL-GR 573 Query 518 CCRVADPLKRLFKLGKPLPAEDKQD---------EDRRRALADEAQRWNRVGIQADLEAA 568 C DP++ +LGK + D D +DR + + ++ IQ L+ Sbjct 574 CFSAPDPIREFQRLGKKKISADNDDALFEQYVGFKDRMSHM----RNFSEYEIQQ-LKIF 628 Query 569 MNSRYEVEG--IRNVITALTTLSRNYHNFRHL 598 N +Y+ G I + + A S N+ NF+ L Sbjct 629 FNLKYKQSGEVIEDYMGACMFYSDNFKNFKTL 660 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 1329 to 1597 Score:60.8 bits(146), Expect:1e-09, Method:Compositional matrix adjust., Identities:68/280(24%), Positives:110/280(39%), Gaps:18/280(6%) Query 282 MDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNV 341 D ++ +KR K T E P +Q I + A + + L + +++ + Sbjct 1329 FDTYMHMIKRQPKSRLDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSK 1388 Query 342 HTLFDMSA-EDFDAIISEHFRPGD-AVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPL 399 + ED S+ D +LE D++ +DKSQ D + + E LG+D L Sbjct 1389 FFFYTRKKPEDLQEFFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDIL 1448 Query 400 LELIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKC 459 + G + KSG T NT I + + L KC Sbjct 1449 AWMWSMGHKRTILQDFQAGIKTLIYYQRKSGDVTTFIGNTF----IIAACVASMLPLDKC 1504 Query 460 --AAFIGDDNIVH---GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQV 514 A+F GDD++++ G++ + A W N E K+ ++ YFCG +I+ Sbjct 1505 FKASFCGDDSLIYLPKGLEYPDIQATANLVW-NFEAKLFR----KKYGYFCGKYII--HH 1557 Query 515 TGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQ 554 C DPLK + KLG + E+ R +L D A Sbjct 1558 ANGCIVYPDPLKLISKLGNKSLVGYEHVEEFRISLLDVAH 1597 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 1153 to 1573 Score:57.8 bits(138), Expect:1e-08, Method:Compositional matrix adjust., Identities:101/442(23%), Positives:172/442(38%), Gaps:33/442(7%) Query 140 ITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHS-YHRAEIRSAVPSPFQNTLQNVL 198 I +EYDA + + + SK S P++ + R+A P L L Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFSKSVSVPRQQQEFFTPAHRTAAERPRSAGLLENL 1212 Query 199 AAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITSYVT- 257 A KRN N + + + ++E + N +WD + L+ N+T + Sbjct 1213 VAMIKRNFNSPDL-------TGILDIEDTAELVVNK-FWDAYIID--ELSGGNVTPMTSD 1262 Query 258 ---RLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAA 314 R + + + D + +D++ +K K G +E +Q I Sbjct 1263 AFHRWMAKQEKSTIGQLADFDFVDLPAIDQYKHMIKAQPKQKLGLSPQDEYAALQTIVYH 1322 Query 315 EPLATAYLCGIHRELVRRLNAVLLPNVHTLFD-MSAEDFDAIISE--HFRPGDAVLETDI 371 A + EL R+L + + + + E +A S+ P + VLE DI Sbjct 1323 SKQINAIFGPLFSELTRQLLERIDSSKFLFYTRKTPEQIEAFFSDLDSTVPME-VLELDI 1381 Query 372 ASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGM 431 + +DKSQ++ ++ E LG++ L E+ + + + G + KSG Sbjct 1382 SKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGD 1441 Query 432 FLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAA---WMN 487 T NT ++ +AS + +++ AAF GDD+I++ K L + A W N Sbjct 1442 VTTFIGNTVIIAACLASMIPMDKVIK---AAFCGDDSILYIPKGLDLPDIQSGANLMW-N 1497 Query 488 MEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRR 547 E K+ +R YFCG +I+ DPLK + KLG E+ R Sbjct 1498 FEAKLYR----KRYGYFCGRYIIHHDRGAIV--YYDPLKLISKLGCKHIKSLDHLEEFRI 1551 Query 548 ALADEAQRWNRVGIQADLEAAM 569 +L D + N L A+ Sbjct 1552 SLCDVSSSLNNCAYFGQLNDAI 1573 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2697 to 2986 Score:57.4 bits(137), Expect:1e-08, Method:Compositional matrix adjust., Identities:82/308(27%), Positives:126/308(40%), Gaps:26/308(8%) Query 245 IRLTTENITSYVTRLKGPKAAALFAKTYDL-KPLQ-EVPMDRFVVDMKRDVKVTPGTKHT 302 I +T + + +++++ + + AL + DL KPL E + F + +KRD KV + Sbjct 2697 IAITEKGVRTWMSKREPSQLRAL---SSDLQKPLNLEEEITTFKLMVKRDAKVKLDSSCL 2753 Query 303 EERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRP 362 + P Q I A E R+ N+ +M+ +I E Sbjct 2754 VKHPPAQNIMFHRKAVNAIFSPCFDEFKNRVITCTNSNIVFFTEMTNSTLASIAKEMLGS 2813 Query 363 GDA--VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITS--THLPTG 418 V E D + FDKSQD + L G D+ LL++ GE TS T L Sbjct 2814 EHVYNVGEIDFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQ--GEYTSNATTLDGQ 2871 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFI-GDDNIVHGVKSDKL 477 F KSG T N++ + I S TN A F+ GDD+++ + Sbjct 2872 LSFSVDNQRKSGASNTWIGNSIETLGILSMFY---YTNRFKALFVSGDDSLIFSESPIRN 2928 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTG-TCCRVADPLKRLFKLGKPLP 536 A+ + E K + + PYFC F V +TG V DP K L KLG Sbjct 2929 SADAMCTELGFETKFLTPSV----PYFCSKFFV---MTGHDVFFVPDPYKLLVKLGA--- 2978 Query 537 AEDKQDED 544 ++D+ D++ Sbjct 2979 SKDEVDDE 2986 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 1153 to 1573 Score:56.2 bits(134), Expect:3e-08, Method:Compositional matrix adjust., Identities:103/449(23%), Positives:176/449(39%), Gaps:47/449(10%) Query 140 ITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHS-YHRAEIRSAVPSPFQNTLQNVL 198 I +EYDA + + + SK S P++ + IR+A P L L Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSRGLLENL 1212 Query 199 AAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITSYVT- 257 A KRN N + + + ++E + N +WD + L+ N+T + Sbjct 1213 VAMIKRNFNSPDL-------TGILDIEDTAELVVNK-FWDAYIID--ELSGGNVTPMTSD 1262 Query 258 ---RLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKH----TEERPKVQV 310 R + + + D + +D++ K +K P K +E +Q Sbjct 1263 AFHRWMAKQEKSTIGQLADFDFVDLPAIDQY----KHMIKAQPKQKLDLSPQDEYAALQT 1318 Query 311 IQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA----- 365 I A + EL R+L + + + + I E F D+ Sbjct 1319 IVYHSKQINAIFGPLFSELTRQLLERIDSSKFLFYTRKTPE---QIEEFFSDLDSTVPME 1375 Query 366 VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGA 425 VLE DI+ +DKSQ++ ++ E LG++ L E+ + + + G + Sbjct 1376 VLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWY 1435 Query 426 MMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAA 484 KSG T NT ++ +AS + +++ AAF GDD++++ K L + A Sbjct 1436 QRKSGDVTTFIGNTVIIAACLASMIPMDKVIK---AAFCGDDSMLYIPKGLDLPDIQSGA 1492 Query 485 ---WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG-KPLPAEDK 540 W N E K+ +R YFCG +I+ DP+K + KLG K + + D Sbjct 1493 NLMW-NFEAKLYR----KRYGYFCGRYIIHHDRGAIV--YYDPVKLISKLGCKHIKSLDH 1545 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAM 569 E+ R +L D + N L A+ Sbjct 1546 L-EEFRISLCDVSASLNNCAYYGQLNDAI 1573 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 473 to 632 Score:55.5 bits(132), Expect:5e-08, Method:Compositional matrix adjust., Identities:45/168(27%), Positives:75/168(44%), Gaps:9/168(5%) Query 367 LETDIASFDKSQDD-SLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGA 425 LE D++ FDKSQ + L + +LL LG PL E + G Sbjct 473 LEADLSKFDKSQGELHLEFQREILLS-LGFPAPLTNWWCDFHRESMLSDPHAGVNMPVSF 531 Query 426 MMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAW 485 ++G T F NT++ M + + + + CA F GDD+++ L A + Sbjct 532 QRRTGDAFTYFGNTLVTMAMMAYCCD--MNTVDCAIFSGDDSLLICKSKPHLDANVFQSL 589 Query 486 MNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGK 533 NME+K++D + PY C F++ ++ V DP++ + +L K Sbjct 590 FNMEIKVMDPSL----PYVCSKFLLETEM-NNLVSVPDPMREIQRLAK 632 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66117.1 Length: 858 Range 1: 349 to 683 Score:54.7 bits(130), Expect:7e-08, Method:Compositional matrix adjust., Identities:95/374(25%), Positives:141/374(37%), Gaps:62/374(16%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + LP L AV F Y N L Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLPRLSKAVAE-RFFIAYINGNS-----------LA 396 Query 249 TENITSYVTR----LKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTE 303 T N + V+ ++ K++ L +YD P +F M K DVK Sbjct 397 TSNFVNVVSNFHDYMEKWKSSGL---SYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNI 453 Query 304 ERP--------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAI 355 +RP K + PL TA R L R V+LP V + + FD Sbjct 454 DRPVPATITYHKKGITSQFSPLFTALFERFQRCLRER---VILP-VGKISSLEMSGFDV- 508 Query 356 ISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITST 413 LE D++ FDKSQ + +L LG P+ + F I Sbjct 509 ------KNKYCLEIDLSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDR 562 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIV 469 G F ++G T F NT++ M + + E+L F GDD++ Sbjct 563 RAGVGMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FPGDDSLG 614 Query 470 HGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 V + NME K+++ + PY C F++ D+ G V DPL+ + Sbjct 615 FSVLPPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQ 669 Query 530 KLG-KPLPAEDKQD 542 +LG K +P D + Sbjct 670 RLGTKKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Alfamovirus AMV] Sequence ID: P03593.2 Length: 790 Range 1: 479 to 702 Score:54.3 bits(129), Expect:1e-07, Method:Compositional matrix adjust., Identities:56/239(23%), Positives:99/239(41%), Gaps:20/239(8%) Query 310 VIQAAEPLATAYLCGIHRELVRRLNAVLLPN--VHTLFDMSAEDFDAIISEHFRPGDAVL 367 ++ ++ P+ +L R ++ + + +P+ H LF + AE FDA S HF+ Sbjct 479 IVMSSSPI---FLAAAARLMLILRDKITIPSGKFHQLFSIDAEAFDA--SFHFK------ 527 Query 368 ETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMM 427 E D + FDKSQ++ L+ LG+ L L + + + G F Sbjct 528 EIDFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNAHRKSRISDSKNGVFFNVDFQR 587 Query 428 KSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAWMN 487 ++G LT NT++ + V + N K GDD+++ V+ R ++ Sbjct 588 RTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLIGTVEE----LPRDQEFLF 643 Query 488 MEVKIIDAVMCERPPYFCGGFIVFDQVTG---TCCRVADPLKRLFKLGKPLPAEDKQDE 543 + ++A P+ C F++ T + +PLK L +LG D DE Sbjct 644 TTLFNLEAKFPHNQPFICSKFLITMPTTSGGKVVLPIPNPLKLLIRLGSKKVNADIFDE 702 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 1361 to 1557 Score:53.1 bits(126), Expect:3e-07, Method:Compositional matrix adjust., Identities:58/206(28%), Positives:91/206(44%), Gaps:17/206(8%) Query 356 ISEHFRPGDA-----VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEI 410 I E F D+ VLE DI+ +DKSQ++ + + LG+++ L E+ + + Sbjct 1361 IQEFFSDLDSHVPMDVLELDISKYDKSQNEFHCAVEYEIWKRLGLNEFLAEVWKQGHRKT 1420 Query 411 TSTHLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTIASRVLEERLTNSKCAAFIGDDNIV 469 T G + KSG T NT ++ + S + E++ AF GDD+++ Sbjct 1421 TLKDYIAGIKTCLWYQRKSGDVTTFIGNTVIIAACLGSMLPMEKVIK---GAFCGDDSVL 1477 Query 470 HGVKS-DKLLAERCAAWM-NMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKR 527 + K D + CA M N E K+ +R YFCG +I+ DPLK Sbjct 1478 YFPKGLDFPDIQSCANLMWNFEAKLYR----KRYGYFCGRYIIHHDKGAIV--YYDPLKL 1531 Query 528 LFKLGKPLPAEDKQDEDRRRALADEA 553 + KLG + E+ R +L D A Sbjct 1532 ISKLGAKHIKDYDHLEELRVSLCDVA 1557 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain FNY)] Sequence ID: P16490.1 Length: 857 Range 1: 349 to 683 Score:52.8 bits(125), Expect:3e-07, Method:Compositional matrix adjust., Identities:92/370(25%), Positives:139/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + ++H Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G LT F NT++ M + + E+L F GDD++ + Sbjct 567 GMPISF--QRRTGDALTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain K)] Sequence ID: Q86783.1 Length: 858 Range 1: 349 to 683 Score:52.4 bits(124), Expect:4e-07, Method:Compositional matrix adjust., Identities:92/370(25%), Positives:138/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + ++H Sbjct 458 PATITYHKKGITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ V Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSVL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain NT9)] Sequence ID: O40977.1 Length: 857 Range 1: 349 to 683 Score:52.4 bits(124), Expect:4e-07, Method:Compositional matrix adjust., Identities:92/370(25%), Positives:138/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + ++H Sbjct 458 PATITYHKKGITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ V Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSVL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Y)] Sequence ID: Q83265.1 Length: 857 Range 1: 349 to 683 Score:52.0 bits(123), Expect:5e-07, Method:Compositional matrix adjust., Identities:91/370(25%), Positives:138/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + ++H Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ + Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Kor)] Sequence ID: Q96711.1 Length: 857 Range 1: 349 to 683 Score:51.6 bits(122), Expect:7e-07, Method:Compositional matrix adjust., Identities:91/370(25%), Positives:138/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + ++H Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKNKH 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ + Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLFNMEAKVMEPAV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1388 to 1788 Score:51.2 bits(121), Expect:1e-06, Method:Compositional matrix adjust., Identities:92/421(22%), Positives:169/421(40%), Gaps:27/421(6%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRE-LPTLDSAVFNVECFKKYACNNDYWDEF 240 +R+A+P Q+ L L A KRN +++E + + +E KK ++DE Sbjct 1388 LRTAMPEKRQSGLAEGLLALNKRNMAAPKLQESVNEFEVIESTIEKAKKV-----FFDES 1442 Query 241 AQKPIRLTT-ENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 +L T E + + + A D++ L E+ + + +K DVK Sbjct 1443 RIDNSKLETFEGAARWWVKQSCTAQKQMLA---DVRTLSEIDVTSYNFMIKGDVKPKLDL 1499 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFD-AIISE 358 E +Q + + + A I +E+ R+ L P+V M++++ D A+ Sbjct 1500 SPQSEYSALQTVVYPDKIVNALFGPIMKEINERIRVALKPHVIYNTRMTSDELDPAVEFL 1559 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 R +E D + FDKS+ + L + G+D+ + L E S + T G Sbjct 1560 DVREDHESVEIDFSKFDKSKTSLHIRVVIELYKLFGLDEMIAYLWEKSQCQTTIKDRVNG 1619 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 + +SG T NT S + L + F GDD+++ K ++ Sbjct 1620 IIAQILYQQESGNCDTYGSNTW--SAALSLLESLPLEKATFMIFGGDDSLIFFPKG--MV 1675 Query 479 AE----RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKP 534 E R A+ N + K+ + + FCG F++ +V DP K L KLG+ Sbjct 1676 IEDPCRRLASMWNFDCKLFNF----KNNSFCGKFLI--KVGEKYKFAPDPYKLLTKLGRK 1729 Query 535 LPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHN 594 + ++ D + ++ + L A+ RY++ +V+ L L + ++ Sbjct 1730 DIKNSDLLSEIFTSIGDNYKSYDDYRVLEALNVAVMERYKLRC--DVMFGLLALKKYINS 1787 Query 595 F 595 F Sbjct 1788 F 1788 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1314 to 1629 Score:50.8 bits(120), Expect:1e-06, Method:Compositional matrix adjust., Identities:78/327(24%), Positives:128/327(39%), Gaps:18/327(5%) Query 283 DRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVH 342 D++ +KR K E P +Q I A I L RL +V+ P Sbjct 1314 DQYRHMIKRTPKAKLDLSIQSEYPALQTIVYHSKHVNAVFGPIFSCLTERLLSVVDPLRF 1373 Query 343 TLFDMSA-EDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLE 401 F + D + + +LE DI+ +DKSQ+ + + E LG+D+ + + Sbjct 1374 KFFTRTTPADLEFFFRDMVVGDMEILELDISKYDKSQNKFHFEVEMRIWEMLGIDKYIEK 1433 Query 402 LIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAA 461 + E + G + KSG T NT++ +L + A Sbjct 1434 VWENGHRKTHLRDYTAGIKTVIEYQRKSGDVTTFIGNTIIIAACLCSILP--MEKVFKAG 1491 Query 462 FIGDDNIVH---GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTC 518 F GDD+I++ + + + W N E K+ + YFCG + + + G Sbjct 1492 FCGDDSIIYLPRNLLYPDIQSVSNNMW-NFEAKLFKKLH----GYFCGRYXLRN---GRY 1543 Query 519 CR-VADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQRW-NRVGIQADLEAAMNSRY-EV 575 R + DPLK + KLG + E+ R ++ D A + N G LE+A+ + + Sbjct 1544 LRLLPDPLKIITKLGCKAIKDWDHLEEFRISMFDMACEYKNCFGFDV-LESAVKESFPKA 1602 Query 576 EGIRNVITALTTLSRNYHNFRHLRGPV 602 EG A+ N + FR L V Sbjct 1603 EGCNVAFCAIYKFLSNKYLFRTLFSDV 1629 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain MB-8)] Sequence ID: Q66145.1 Length: 857 Range 1: 349 to 683 Score:50.4 bits(119), Expect:2e-06, Method:Compositional matrix adjust., Identities:90/370(24%), Positives:135/370(36%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPI 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFDV----- 508 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 509 --KNKYCLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ + Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDSSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83262.1 Length: 857 Range 1: 349 to 683 Score:49.7 bits(117), Expect:2e-06, Method:Compositional matrix adjust., Identities:91/370(25%), Positives:138/370(37%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD + S++ Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFD-VKSKY 512 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 513 ------CLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ + Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSLL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDPSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain B)] Sequence ID: Q66136.1 Length: 857 Range 1: 349 to 683 Score:48.9 bits(115), Expect:4e-06, Method:Compositional matrix adjust., Identities:90/370(24%), Positives:134/370(36%), Gaps:54/370(14%) Query 192 NTLQNVLAAATKRNCNVTQMRE---LPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ + L L AV F Y N A Sbjct 349 GTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAE-RFFISYINGN----SLASSNFVNV 403 Query 249 TENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDM-KRDVKVTPGTKHTEERP- 306 N Y+ + K +YD P +F M K DVK +RP Sbjct 404 VSNFHDYMEKWKSS------GLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPV 457 Query 307 -------KVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 K + PL TA R L R ++LP V + + FD Sbjct 458 PATITYHKKSITSQFSPLFTALFERFQRCLRER---IILP-VGKISSLEMAGFDV----- 508 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELI--EASFGEITSTHLPT 417 LE D++ FDKSQ + +L LG P+ + F I Sbjct 509 --KNKYCLEIDLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGV 566 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLE----ERLTNSKCAAFIGDDNIVHGVK 473 G F ++G T F NT++ M + + E+L F GDD++ Sbjct 567 GMPISF--QRRTGDAFTYFGNTIVTMAEFAWCYDTDQFEKLL------FSGDDSLGFSQL 618 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG- 532 + + NME K+++ + PY C F++ D+ G V DPL+ + +LG Sbjct 619 PPVGDSSKFTTLYNMEAKVMEPSV----PYICSKFLLSDEF-GNTFSVPDPLREVQRLGT 673 Query 533 KPLPAEDKQD 542 K +P D + Sbjct 674 KKIPYSDNDE 683 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Peanut stunt virus (strain J)] Sequence ID: P28727.1 Length: 834 Range 1: 336 to 675 Score:48.9 bits(115), Expect:5e-06, Method:Compositional matrix adjust., Identities:87/368(24%), Positives:144/368(39%), Gaps:39/368(10%) Query 192 NTLQNVLAAATKRNCNVTQMR---ELPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLT 248 T + VL A KRN +V ++ +L + AV FK+ N + AQ Sbjct 336 GTTKEVLTAIKKRNADVPELSGSVDLTRISKAV--ARRFKESYFNTN---ALAQSNFLNV 390 Query 249 TENITSYVTRLKGPKAAALFAKTYD-LKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPK 307 N +Y+ + A+ L TYD L L + + +K DVK +RP Sbjct 391 VGNFHAYMQKWA---ASGL---TYDDLPDLHAENLQLYEHMVKSDVKPVVADTLNVDRPV 444 Query 308 VQVIQAAEPLATAYLCGIHRELVRRL-----NAVLLPNVHTLFDMSAEDFDAIISEHFRP 362 I T+ + L R V++P V + + ++F +++++H Sbjct 445 PATITFHAKGITSQFSPLFISLFERFQRCLRGRVVVP-VGKISSLEMDNF-SVLNKH--- 499 Query 363 GDAVLETDIASFDKSQDDSLAYTGLMLLEDLG--VDQPLLELIEASFGEITSTHLPTGTR 420 LE D++ FDKSQ + +L LG VD + I G Sbjct 500 ---CLEIDLSKFDKSQGELHLMIQEEILNLLGCPVDISKWWCDFHRYSYIKDKR--AGVS 554 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 ++G T F NT++ M + S + + F GDD++ + + ++ Sbjct 555 MPISFQRRTGDAFTYFGNTLVTMALFSWCYDTDQFDR--MLFSGDDSLAFSLNPIEGKSD 612 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 + NME K +D PY C F++ D++ G V DPL+ L +LG + Sbjct 613 WFTSLFNMEAKNMDPPT----PYICSKFLLTDEL-GNTFSVPDPLRELQRLGTKKIPDGG 667 Query 541 QDEDRRRA 548 DE +A Sbjct 668 LDESYLKA 675 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative protease; AltName: Full=Putative papain-like cysteine protease; Short=PCP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus Ct1] Sequence ID: Q9IVZ9.1 Length: 1707 Range 1: 1433 to 1569 Score:48.1 bits(113), Expect:1e-05, Method:Compositional matrix adjust., Identities:40/145(28%), Positives:67/145(46%), Gaps:10/145(6%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTG 386 R + + + A L PNV + + ED + PG V E D + FD +Q++ Sbjct 1433 RAIEKEILAALAPNV--FYGDAYEDTVLAAAVAGAPGCKVFENDFSEFDSTQNNFSLGLE 1490 Query 387 LMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMK--SGMFLTLFVNTMLNMT 444 +++E+ G+ Q ++ L + + S + + K SG TL NT+ NM Sbjct 1491 CIIMEECGMPQWMIRL----YHLVRSAWILQAPKESLRGFWKKHSGEPGTLLWNTVWNMA 1546 Query 445 IASRVLEERLTNSKCAAFIGDDNIV 469 + + E R + K AAF GDD++V Sbjct 1547 VIAHCYEFR--DLKVAAFKGDDSVV 1569 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 1279 to 1628 Score:47.0 bits(110), Expect:2e-05, Method:Compositional matrix adjust., Identities:77/364(21%), Positives:134/364(36%), Gaps:18/364(4%) Query 195 QNVLAAATKRNCNVTQMRELPTLDS-AVFNVECFKKYACNNDYWDEFAQKPIRLTTENIT 253 + V A KRN NV ++ L++ A VE F + + + + + + + E I Sbjct 1279 RQVGLAIEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSAEQIQ 1338 Query 254 SYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQA 313 +Y + K D + P+ ++ +KRDVK E K I Sbjct 1339 TYQNKTGN--------KVTDPVCVALSPIQKYKHMIKRDVKFNLTDGAQSEYTKAATITY 1390 Query 314 AEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF-RPGDAVLETDIA 372 +P T I + RL A ++ + + + H + E D + Sbjct 1391 HQPEITQVATAIFGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSENNTFTEIDFS 1450 Query 373 SFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMF 432 FDKSQ + ++L G D + L + + G FK ++G Sbjct 1451 KFDKSQGEIHQLIQDLILIKFGCDPEFVALWSTAHRSSSIFDQNVGIGFKTDFQRRTGDA 1510 Query 433 LTLFVNTMLNMTIASRVLEERLTNSKCAAFI-GDDNIVHGVKSDKLLAERCAAWMNMEVK 491 T N+++ + + V+ + + GDD+++ ++ E NM K Sbjct 1511 FTFLGNSLVTAAMLAFVISDPDREKIRYMLVGGDDSLICSYGPIQVPLEPLGDIFNMSCK 1570 Query 492 IIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLG-KPLPAEDKQDEDRRRALA 550 ++ PYF +++ C V DP K L KLG K +P + R LA Sbjct 1571 LVQPAC----PYFASRYLIRRGDEILC--VPDPYKLLVKLGRKDVPDNQASLCEIRTGLA 1624 Query 551 DEAQ 554 D A+ Sbjct 1625 DSAK 1628 >RecName: Full=RNA-directed RNA polymerase 2a; Short=2a pol; AltName: Full=2a polymerase [Tobacco streak virus (strain WC)] Sequence ID: P89678.1 Length: 800 Range 1: 372 to 626 Score:45.8 bits(107), Expect:4e-05, Method:Compositional matrix adjust., Identities:62/271(23%), Positives:105/271(38%), Gaps:30/271(11%) Query 276 PLQEVPMDRFVVDMKRDVKVTPGTKHTEERP--------KVQVIQAAEPLATAYLCGIHR 327 P+ V +D+++ +K +K ERP K V+ P +LC + R Sbjct 372 PVPLVALDKYMHMIKTTLKPVEEDNLHIERPIPATITYHKKGVVMMTSPY---FLCAMVR 428 Query 328 ELVRRLNAVLLPN--VHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYT 385 L + ++P H +F M+ E S+ F+ E D + FDKSQ Sbjct 429 LLYVLKSKFVVPTGKYHQIFQMNPELLKH--SKEFK------EIDFSKFDKSQGRLHHDV 480 Query 386 GLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTI 445 L LG+ + + S + G F ++G T NT++ +++ Sbjct 481 QFRLFLALGIPEHFVTTWFNSHEKSYIRDRDCGIGFSVDYQRRTGDACTYLGNTLVTLSV 540 Query 446 ASRVLEERLTNSKCAAFIGDDNIVHGVKS-DKLLAERCAAWMNMEVKIIDAVMCERPPYF 504 S V + N A GDD+++ ++ + + C + N E K P+ Sbjct 541 LSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCVSLFNFETK-----FPHNQPFI 595 Query 505 CGGFIVF---DQVTGTCCRVADPLKRLFKLG 532 C F++ D + V +PLK L KLG Sbjct 596 CSKFLLVVECDDGSEEVLAVPNPLKLLQKLG 626 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Botrytis virus F NZL/Howitt] Sequence ID: Q9DRA1.1 Length: 1896 Range 1: 1631 to 1801 Score:45.4 bits(106), Expect:6e-05, Method:Compositional matrix adjust., Identities:47/189(25%), Positives:78/189(41%), Gaps:23/189(12%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTG 386 R + RR+ A+L P+V+ + EDF+ ++ H+ + D ++D SQD + Sbjct 1631 RYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFE 1690 Query 387 LMLLEDLGVDQPLLELIEASF---GEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNM 443 +L+ L D P L++IEA ITS P M SG T NT+ N+ Sbjct 1691 TLLMRRL--DFP-LDIIEAYVEMKASITSHFGP------LAIMRFSGEVWTYLFNTLGNI 1741 Query 444 TIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAWMNM--EVKIIDAVMCERP 501 E S + GDD ++ + + W + + +++ + Sbjct 1742 AFTYAKYE---VPSVAQVYGGDDKSINSPITVR------TGWSQLVGKFNLVEKPVVGYE 1792 Query 502 PYFCGGFIV 510 P FCG IV Sbjct 1793 PTFCGWRIV 1801 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Broad bean mottle virus] Sequence ID: P27462.1 Length: 810 Range 1: 473 to 640 Score:45.1 bits(105), Expect:7e-05, Method:Compositional matrix adjust., Identities:48/177(27%), Positives:78/177(44%), Gaps:11/177(6%) Query 367 LETDIASFDKSQDD-SLAYTGLMLLEDLGVDQPLLELIEASFGEITSTH-LPTGTRFKFG 424 LE D++ FDKSQ + L + L+L+ +LG PL I S L G Sbjct 473 LEADLSKFDKSQGELHLEFQRLILI-NLGFPVPLTNWWCDFHRSILSRWTLRPGVSIPLL 531 Query 425 AMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAA 484 + G F L+ + N +A ++ ++ A F GDD++V + + Sbjct 532 SKTNRGCFHLLWEHFSDNAMMAYCF---DMSTAELAMFSGDDSLVICGSKPEFDPGVFQS 588 Query 485 WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQ 541 NMEVK++D + PY C F++ + G V DP++ + +L K +D Q Sbjct 589 LFNMEVKVMDPSL----PYICSKFLLESEF-GDVFSVPDPMREIQRLQKRKIPKDVQ 640 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83045.2 Length: 2379 Range 1: 2141 to 2305 Score:44.7 bits(104), Expect:1e-04, Method:Compositional matrix adjust., Identities:43/175(25%), Positives:68/175(38%), Gaps:12/175(6%) Query 367 LETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAM 426 LE D + FDKSQ M+ + G L + G + G Sbjct 2141 LEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYFCRAKATCGVDLELGTQ 2200 Query 427 MKSGMFLTLFVNTM--LNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAA 484 ++G T NT+ L M ++S +++ GDD+++ K + Sbjct 2201 RRTGSPNTWLSNTLVTLGMMLSSYDIDD----IDLLLVSGDDSLIFSRKHLPNKTQEINK 2256 Query 485 WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 ME K I+ + PYFC FIV ++ G + DP++ KL P+ ED Sbjct 2257 NFGMEAKYIE----KSSPYFCSKFIV--ELNGKLKVIPDPIRFFEKLSIPIRQED 2305 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 1553 to 1797 Score:43.9 bits(102), Expect:2e-04, Method:Compositional matrix adjust., Identities:66/273(24%), Positives:112/273(41%), Gaps:42/273(15%) Query 281 PMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELV------RRLN 334 P+D+ + MK + + TE + A + LA C H+ LV R Sbjct 1553 PLDKIFLFMKSQLCTKFEKRFTEAK-------AGQTLA----CFPHKILVEFSPWCRYTE 1601 Query 335 AVLLPN------VHTLFDMSA-EDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGL 387 VL N +H + S EDF ++ F G +E+D +FD SQD ++ + Sbjct 1602 KVLTANLPDNYYIHQRKNFSELEDF----AKRFSNGSMCVESDYTAFDVSQDHTILAFEV 1657 Query 388 MLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMK-SGMFLTLFVNTMLNMTIA 446 LL+ G D +L+ S+ ++ T G R A+M+ +G F T NT+ NM Sbjct 1658 ELLKHFGWDDKVLQ----SYIKMKCT---LGCRLGGFAIMRFTGEFSTFLFNTLANMVFT 1710 Query 447 SRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCG 506 E + + F GDD + E + ++++ K+ + P FCG Sbjct 1711 FCRYE--VPDGTPICFAGDDMCALRNLREIDTHECILSKLSLKAKVNRT----KVPMFCG 1764 Query 507 GFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 + FD + C + + L+ + G+ + D Sbjct 1765 WRLCFDGLIKEPCLIYERLQVAIENGRLMDVID 1797 >RecName: Full=RNA replication protein; AltName: Full=ORF 1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Chrysanthemum virus B] Sequence ID: P37987.1 Length: 260 Range 1: 44 to 178 Score:42.0 bits(97), Expect:3e-04, Method:Compositional matrix adjust., Identities:43/148(29%), Positives:66/148(44%), Gaps:14/148(9%) Query 368 ETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRF-KFGAM 426 E+D +FD SQD + L L+E LG+ + L+E + +F HL G++ F M Sbjct 44 ESDYEAFDASQDQYIVAFELALMEYLGLPRDLIE--DYAF---IKCHL--GSKLGNFAIM 96 Query 427 MKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAWM 486 SG T NTM NM L + +S+ F GDD S++L ++ Sbjct 97 RFSGEASTFLFNTMANMLFT--FLRYNIKDSEHICFAGDDMCA----SERLCIKKEHEGF 150 Query 487 NMEVKIIDAVMCERPPYFCGGFIVFDQV 514 ++K+ V P FCG + D + Sbjct 151 LNKLKLKAKVFFVDKPTFCGWHLCPDGI 178 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 1404 to 1805 Score:42.7 bits(99), Expect:5e-04, Method:Compositional matrix adjust., Identities:93/425(22%), Positives:162/425(38%), Gaps:33/425(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEFA 241 +R+A+P QN + A KRN P L AV E ++ N + F Sbjct 1404 LRTAMPPKRQNLPVEAMLALKKRNMAA------PKLQEAVNEFEVIERTV--NRAKEIFF 1455 Query 242 QKPIRLTTENITSYVTRLKGPKAAALFAKTY---DLKPLQEVPMDRFVVDMKRDVKVTPG 298 + + +++ + L+ K + AK + + L E+ + + +K D K Sbjct 1456 DTSL-IDDSEVSTRESNLRWWKRQSTTAKAQLKKETRLLHELDLCYYNYCIKGDEKPKMD 1514 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 E +Q + + + A +E+ R+ L P+V M+AE+ + + E Sbjct 1515 RSPQHEYGALQTVVFPDKIVNALFGPAMKEINERIRLALKPHVVYNSRMNAEELNRTV-E 1573 Query 359 HFRPGD--AVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLP 416 P + E D + FDKS+ + L + G++ L E S + Sbjct 1574 FLDPEEDFNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLNDLFALLWEKSQCQTKIRDFV 1633 Query 417 TGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEER-LTNSKCAAFIGDDNIV----HG 471 G KSG T NT + A +LE L +K F GDD+++ H Sbjct 1634 NGITAYLLYQQKSGNCDTYGSNT---WSAALALLESMPLEKAKFMIFGGDDSLILFPKHL 1690 Query 472 VKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKL 531 D R A+ N + K+ D + FCG F++ +V DP+K + KL Sbjct 1691 TIEDP--CRRLASLWNFDCKLFDF----KHNMFCGKFLL--KVGDRFKFAPDPMKLITKL 1742 Query 532 GKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRN 591 G+ + + + ++ D + + I L A+ RY + AL L + Sbjct 1743 GRKDIVDGRLLSEIFVSVGDNYRSYRDYRILEQLTYALRERYRT--TEDPTAALVALKKY 1800 Query 592 YHNFR 596 +F+ Sbjct 1801 IFDFK 1805 >RecName: Full=RNA replication polyprotein; AltName: Full=223 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Blueberry scorch virus] Sequence ID: Q65652.1 Length: 1967 Range 1: 1712 to 1886 Score:42.4 bits(98), Expect:5e-04, Method:Compositional matrix adjust., Identities:47/189(25%), Positives:78/189(41%), Gaps:15/189(7%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTG 386 R + ++LN VL + E+ + + E G E+D +FD SQD + Sbjct 1712 RYIEKKLNEVLPSKYYIHSGKGLEELNRWVIEGRFEG-VCTESDYEAFDASQDHYIVAFE 1770 Query 387 LMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRF-KFGAMMKSGMFLTLFVNTMLNMTI 445 + L+ LG+ L+E + THL G++ F M SG T NTM NM Sbjct 1771 ICLMRYLGLPNDLIEDY-----KFIKTHL--GSKLGNFAIMRFSGEASTFLFNTMANMLF 1823 Query 446 ASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFC 505 L+ L ++ F GDD +G + + + ++ K+ + + P FC Sbjct 1824 T--FLQYDLKGNERICFAGDDMCANGRLHVSSKHKNFMSKLKLKAKVSNTM----NPTFC 1877 Query 506 GGFIVFDQV 514 G + D + Sbjct 1878 GWNLSSDGI 1886 >RecName: Full=RNA replication protein; AltName: Full=152 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus S (strain Peruvian)] Sequence ID: P22657.1 Length: 353 Range 1: 101 to 231 Score:42.0 bits(97), Expect:5e-04, Method:Compositional matrix adjust., Identities:41/141(29%), Positives:59/141(41%), Gaps:11/141(7%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTG 386 R + ++LN VL + E+ + + E G E+D +FD SQD + Sbjct 101 RYIEKKLNEVLPATFYIHSGKGLEELNKWVIESKFEG-VCTESDYEAFDASQDQYIVAFE 159 Query 387 LMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRF-KFGAMMKSGMFLTLFVNTMLNMTI 445 L L+ LG+ L+E + THL G++ F M SG T NTM NM Sbjct 160 LALMRYLGLPNDLIEDY-----KYIKTHL--GSKLGNFAIMRFSGEASTFLFNTMANMLF 212 Query 446 ASRVLEERLTNSKCAAFIGDD 466 L +L + F GDD Sbjct 213 T--FLRYKLKGDERICFAGDD 231 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative protease; AltName: Full=Putative papain-like cysteine protease; Short=PCP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus US2] Sequence ID: Q9YLR1.1 Length: 1708 Range 1: 1434 to 1570 Score:42.0 bits(97), Expect:7e-04, Method:Compositional matrix adjust., Identities:40/146(27%), Positives:66/146(45%), Gaps:12/146(8%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-VLETDIASFDKSQDDSLAYT 385 R + + + A+L PN+ F A +S G V E D + FD +Q++ Sbjct 1434 RAIEKEILALLPPNIFYGDAYEESVFAAAVSGA---GSCMVFENDFSEFDSTQNNFSLGL 1490 Query 386 GLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMK--SGMFLTLFVNTMLNM 443 +++E+ G+ Q L+ L + + S + + K SG TL NT+ NM Sbjct 1491 ECVVMEECGMPQWLIRL----YHLVRSAWILQAPKESLKGFWKKHSGEPGTLLWNTVWNM 1546 Query 444 TIASRVLEERLTNSKCAAFIGDDNIV 469 I + E R + + AAF GDD++V Sbjct 1547 AIIAHCYEFR--DFRVAAFKGDDSVV 1570 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative protease; AltName: Full=Putative papain-like cysteine protease; Short=PCP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus swine/g3/United States/swUS1] Sequence ID: Q6J8G2.1 Length: 1708 Range 1: 1434 to 1570 Score:42.0 bits(97), Expect:8e-04, Method:Compositional matrix adjust., Identities:40/146(27%), Positives:66/146(45%), Gaps:12/146(8%) Query 327 RELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-VLETDIASFDKSQDDSLAYT 385 R + + + A+L PN+ F A +S G V E D + FD +Q++ Sbjct 1434 RAIEKEILALLPPNIFYGDAYEESVFAAAVSGA---GSCMVFENDFSEFDSTQNNFSLGL 1490 Query 386 GLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMK--SGMFLTLFVNTMLNM 443 +++E+ G+ Q L+ L + + S + + K SG TL NT+ NM Sbjct 1491 ECVVMEECGMPQWLIRL----YHLVRSAWILQAPKESLKGFWKKHSGEPGTLLWNTVWNM 1546 Query 444 TIASRVLEERLTNSKCAAFIGDDNIV 469 I + E R + + AAF GDD++V Sbjct 1547 AIIAHCYEFR--DFRVAAFKGDDSVV 1570